AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018115.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018115.01.T01 MTR_6g004840 91.139 79 7 0 2 80 1531 1609 4.65e-41 147
MsG0480018115.01.T01 MTR_3g115250 96.970 66 2 0 101 166 389 454 1.10e-38 140
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018115.01.T01 AT5G40480 54.430 79 36 0 2 80 1504 1582 1.15e-23 97.4

Find 33 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATTGAATGATAAAGTTTC+TGG 0.155807 4:+375108 MsG0480018115.01.T01:intron
CCTATTAACTTGAGCATAAA+AGG 0.238684 4:+374299 MsG0480018115.01.T01:CDS
GATGAAGTAGATGGGTTTCC+AGG 0.319944 4:+377088 MsG0480018115.01.T01:CDS
GGACAGTGGTTTACAACTAA+TGG 0.325219 4:+375129 MsG0480018115.01.T01:CDS
ATATCAGTAGATCCGTTAAC+TGG 0.351760 4:+375159 MsG0480018115.01.T01:CDS
TTCACCTCAGCTGTGTTGGC+TGG 0.396321 4:+375448 MsG0480018115.01.T01:CDS
TTTGACCGACTCAATGTTGA+AGG 0.398912 4:+373795 None:intergenic
CCATCATCCTCAGGCTGAAA+AGG 0.439214 4:+375472 MsG0480018115.01.T01:CDS
GGACTTCCGATGTTTAGAAC+TGG 0.439740 4:-374278 None:intergenic
ATCCTTCACCTCAGCTGTGT+TGG 0.455877 4:+375444 MsG0480018115.01.T01:CDS
ACTCAATGTTGAAGGCAATT+CGG 0.475002 4:+373803 None:intergenic
TACTCATTTCCCTCTTGACC+TGG 0.477883 4:-377106 None:intergenic
TTGGCTGGACCATCATCCTC+AGG 0.499441 4:+375463 MsG0480018115.01.T01:CDS
TGGTGTTGGATGAAGTAGAT+GGG 0.505680 4:+377080 MsG0480018115.01.T01:CDS
TGTTGAAGGCAATTCGGCAC+TGG 0.511452 4:+373809 MsG0480018115.01.T01:CDS
CAATGAAGATGATGATGGTA+TGG 0.528365 4:+377060 MsG0480018115.01.T01:CDS
AGCCAACACAGCTGAGGTGA+AGG 0.531386 4:-375446 None:intergenic
ATGGTGTTGGATGAAGTAGA+TGG 0.532968 4:+377079 MsG0480018115.01.T01:CDS
AGATGATGATGGTATGGTGT+TGG 0.539111 4:+377066 MsG0480018115.01.T01:CDS
TATTTAGATCACGATGGCGA+TGG 0.561928 4:+377127 MsG0480018115.01.T01:CDS
TGACAATGATTCAGTGATGA+TGG 0.580300 4:+377186 MsG0480018115.01.T01:CDS
TGACTCTGATGACGAGGAGT+CGG 0.581992 4:+377030 MsG0480018115.01.T01:CDS
AGATGGGTTTCCAGGTCAAG+AGG 0.591240 4:+377096 MsG0480018115.01.T01:CDS
CAAAATCCAGTTCTAAACAT+CGG 0.600381 4:+374272 MsG0480018115.01.T01:CDS
ATGATAAAGTTTCTGGACAG+TGG 0.603871 4:+375115 MsG0480018115.01.T01:CDS
GATGGAGCTTCACTAAGACT+TGG 0.614741 4:+377145 MsG0480018115.01.T01:CDS
TGGAGTAGCAAAACAGCCCA+AGG 0.625231 4:+375179 MsG0480018115.01.T01:CDS
GATGGGTTTCCAGGTCAAGA+GGG 0.631294 4:+377097 MsG0480018115.01.T01:CDS
ACAAAAGTCAGACTACGTGC+TGG 0.638583 4:+373867 MsG0480018115.01.T01:CDS
TGTGACAATGAAGATGATGA+TGG 0.653424 4:+377055 MsG0480018115.01.T01:CDS
TGGTCCAGCCAACACAGCTG+AGG 0.671308 4:-375452 None:intergenic
AATGAGTATTTAGATCACGA+TGG 0.713624 4:+377121 MsG0480018115.01.T01:CDS
TGTTGATGACTCTGATGACG+AGG 0.734881 4:+377024 MsG0480018115.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGTTTAAATATGTATATT+TGG - Chr4:376571-376590 None:intergenic 10.0%
!! TTGTTTAAATATGTATATTT+GGG - Chr4:376570-376589 None:intergenic 10.0%
!! AACTATGTATTGTTATATAA+TGG - Chr4:376903-376922 None:intergenic 15.0%
!! ACTATGTATTGTTATATAAT+GGG - Chr4:376902-376921 None:intergenic 15.0%
!! ATAAAAGTCAAAAGATTTAA+AGG - Chr4:375043-375062 None:intergenic 15.0%
!! ATACATTTCAATAAACTATA+CGG - Chr4:374846-374865 None:intergenic 15.0%
!! ATTTAGCAAATCATTTATAA+AGG + Chr4:375309-375328 MsG0480018115.01.T01:intron 15.0%
!! TTTAGCAAATCATTTATAAA+GGG + Chr4:375310-375329 MsG0480018115.01.T01:intron 15.0%
!!! TTTTTAACAACCATTTATTT+GGG + Chr4:375816-375835 MsG0480018115.01.T01:intron 15.0%
!!! TTTTTTAACAACCATTTATT+TGG + Chr4:375815-375834 MsG0480018115.01.T01:intron 15.0%
!! ATAGAATGTATGATTCATAT+GGG - Chr4:374941-374960 None:intergenic 20.0%
!! CAAAAGTAGAAATAAAATCT+TGG + Chr4:376759-376778 MsG0480018115.01.T01:intron 20.0%
!! TATCACAATATTAATAGTCA+CGG - Chr4:375612-375631 None:intergenic 20.0%
!! TTTAAATATGTATATTTGGG+AGG - Chr4:376567-376586 None:intergenic 20.0%
!!! AAGAGTATTGAAAACAATAA+GGG + Chr4:376257-376276 MsG0480018115.01.T01:intron 20.0%
!!! CAAGATTTTATTTCTACTTT+TGG - Chr4:376761-376780 None:intergenic 20.0%
!!! GCATTTTCCTTATATAATAT+AGG - Chr4:376706-376725 None:intergenic 20.0%
!!! TAAGAGTATTGAAAACAATA+AGG + Chr4:376256-376275 MsG0480018115.01.T01:intron 20.0%
!!! TTTATACTTTTTCTCTAAGA+CGG + Chr4:375058-375077 MsG0480018115.01.T01:intron 20.0%
! AAATAAAAGAACAATACGAG+TGG - Chr4:375589-375608 None:intergenic 25.0%
! AAATATAGGTTCATAACATG+TGG - Chr4:373968-373987 None:intergenic 25.0%
! AAGAAAAATGTATCTGTTTG+TGG + Chr4:374398-374417 MsG0480018115.01.T01:intron 25.0%
! AATCAAAACGAAAATGTTGT+CGG + Chr4:375631-375650 MsG0480018115.01.T01:intron 25.0%
! AATTACAGTCATTGGAATTA+TGG - Chr4:374080-374099 None:intergenic 25.0%
! ACAAGTTAAGAAGCTAAAAA+AGG - Chr4:376854-376873 None:intergenic 25.0%
! AGAAATAATTGGCAGTTATA+TGG - Chr4:374153-374172 None:intergenic 25.0%
! AGCAAAAAAAGATAAGAAAG+AGG - Chr4:376358-376377 None:intergenic 25.0%
! ATAATGTTAATTAGCACCTT+GGG - Chr4:375198-375217 None:intergenic 25.0%
! ATATATAGTGATGCCTTAAA+TGG - Chr4:376927-376946 None:intergenic 25.0%
! ATGTTTCAGTAGAATCAAAT+AGG - Chr4:374213-374232 None:intergenic 25.0%
! CAATACATAGTTTCCATTTA+AGG + Chr4:376911-376930 MsG0480018115.01.T01:intron 25.0%
! CACATAATAATTACAGTCAT+TGG - Chr4:374088-374107 None:intergenic 25.0%
! CCTATATTTCAATGACAATA+AGG + Chr4:373979-373998 MsG0480018115.01.T01:intron 25.0%
! CCTTATTGTCATTGAAATAT+AGG - Chr4:373982-374001 None:intergenic 25.0%
! GATAGAATGTATGATTCATA+TGG - Chr4:374942-374961 None:intergenic 25.0%
! TACAAAAAAAAAACTGCAAG+AGG - Chr4:375967-375986 None:intergenic 25.0%
! TATAATGTTAATTAGCACCT+TGG - Chr4:375199-375218 None:intergenic 25.0%
! TTTCAAATTATTAGCTGTGT+CGG - Chr4:376122-376141 None:intergenic 25.0%
! TTTCAATAAACTATACGGTT+AGG - Chr4:374841-374860 None:intergenic 25.0%
!! CGAAATTGATTTATGAAAGA+CGG + Chr4:374573-374592 MsG0480018115.01.T01:intron 25.0%
!! GAAATTGATTTATGAAAGAC+GGG + Chr4:374574-374593 MsG0480018115.01.T01:intron 25.0%
!!! ATTTTTTACTTCGTCTTTGA+TGG + Chr4:375414-375433 MsG0480018115.01.T01:intron 25.0%
!!! GATTATTTTGTTTAACGTTC+TGG - Chr4:376451-376470 None:intergenic 25.0%
!!! TTTCACTTCTGATTGTTTTT+TGG - Chr4:376286-376305 None:intergenic 25.0%
AATGAGTATTTAGATCACGA+TGG + Chr4:377121-377140 MsG0480018115.01.T01:CDS 30.0%
ACCATTTATTTGGGAAACAA+AGG + Chr4:375825-375844 MsG0480018115.01.T01:intron 30.0%
ATGTACTGTATGTTAGACTT+TGG + Chr4:376627-376646 MsG0480018115.01.T01:intron 30.0%
CATTTCACAAGTTTGAATGA+TGG + Chr4:375768-375787 MsG0480018115.01.T01:intron 30.0%
CTTGCACATAAATAAACACA+TGG + Chr4:376470-376489 MsG0480018115.01.T01:intron 30.0%
GGATTGAATGATAAAGTTTC+TGG + Chr4:375108-375127 MsG0480018115.01.T01:intron 30.0%
GGTCAAGCCTATATTATATA+AGG + Chr4:376696-376715 MsG0480018115.01.T01:intron 30.0%
GTAATTTACTGTAAAGTGCA+TGG - Chr4:373910-373929 None:intergenic 30.0%
GTATCTAGTATGGAAATGAT+AGG + Chr4:376970-376989 MsG0480018115.01.T01:intron 30.0%
TAACTTGAGCATAAAAGGTA+TGG + Chr4:374304-374323 MsG0480018115.01.T01:intron 30.0%
TCATTCTATCTTCATGTTTC+AGG + Chr4:375087-375106 MsG0480018115.01.T01:intron 30.0%
TTCAATGTAATTACGAGTGT+CGG + Chr4:376153-376172 MsG0480018115.01.T01:intron 30.0%
TTGACAATCACAAAGTTCAT+TGG - Chr4:375266-375285 None:intergenic 30.0%
TTTAGATAGTCAAGAAGTCA+AGG + Chr4:375872-375891 MsG0480018115.01.T01:intron 30.0%
! ACCTTTGTTTCCCAAATAAA+TGG - Chr4:375829-375848 None:intergenic 30.0%
! CCTATTAACTTGAGCATAAA+AGG + Chr4:374299-374318 MsG0480018115.01.T01:CDS 30.0%
! CCTTTTATGCTCAAGTTAAT+AGG - Chr4:374302-374321 None:intergenic 30.0%
!! AAAGGTATGGTTAGTTTGAA+TGG + Chr4:374317-374336 MsG0480018115.01.T01:intron 30.0%
!! ATAATGGGCAGAGAAATAAT+TGG - Chr4:374164-374183 None:intergenic 30.0%
!! ATATAGAAGCGTCAATTATG+AGG - Chr4:376054-376073 None:intergenic 30.0%
!! ATGTTTAGAACTGGATTTTG+AGG - Chr4:374272-374291 None:intergenic 30.0%
!! CAAAATCCAGTTCTAAACAT+CGG + Chr4:374272-374291 MsG0480018115.01.T01:CDS 30.0%
!! GGTATCTGGTATTTATTTTC+AGG + Chr4:376991-377010 MsG0480018115.01.T01:intron 30.0%
!! TAGGAGTGCAATCATTTTTA+CGG - Chr4:374822-374841 None:intergenic 30.0%
!! TATAGAAGCGTCAATTATGA+GGG - Chr4:376053-376072 None:intergenic 30.0%
!! TATGCGTCTAATTTTGTTGT+AGG - Chr4:375740-375759 None:intergenic 30.0%
!! TGGATTTTGAGGATATACAT+GGG - Chr4:374261-374280 None:intergenic 30.0%
AAAAAATCAGCCAAAACCAC+AGG - Chr4:375401-375420 None:intergenic 35.0%
AAAAGAACAATACGAGTGGA+GGG - Chr4:375585-375604 None:intergenic 35.0%
AAATAGGACAGAGGAAATAC+GGG - Chr4:374197-374216 None:intergenic 35.0%
AACCAAAAGCTTAAGCTGTA+TGG - Chr4:374451-374470 None:intergenic 35.0%
AGAGGCAATAAATTCAGTGT+TGG - Chr4:375903-375922 None:intergenic 35.0%
AGTAGAATCAAATAGGACAG+AGG - Chr4:374206-374225 None:intergenic 35.0%
ATATCAGTAGATCCGTTAAC+TGG + Chr4:375159-375178 MsG0480018115.01.T01:CDS 35.0%
CAAATAGGACAGAGGAAATA+CGG - Chr4:374198-374217 None:intergenic 35.0%
CCTTAGTAGAAGACTAGAAT+TGG - Chr4:376527-376546 None:intergenic 35.0%
CTATTCTTGCTTTGTAAACC+TGG + Chr4:374961-374980 MsG0480018115.01.T01:intron 35.0%
GTATGGAAATGATAGGTATC+TGG + Chr4:376977-376996 MsG0480018115.01.T01:intron 35.0%
GTATGGTGAAAGTAAGCAAA+TGG - Chr4:374434-374453 None:intergenic 35.0%
TAAAAGAACAATACGAGTGG+AGG - Chr4:375586-375605 None:intergenic 35.0%
TACAAATAAGCTACGAAGCA+CGG + Chr4:376073-376092 MsG0480018115.01.T01:intron 35.0%
TATGAAAGACGGGAAACATT+GGG + Chr4:374584-374603 MsG0480018115.01.T01:intron 35.0%
TGAACTAAGTAGTTTCGAAG+CGG + Chr4:374642-374661 MsG0480018115.01.T01:intron 35.0%
TGACAATGATTCAGTGATGA+TGG + Chr4:377186-377205 MsG0480018115.01.T01:CDS 35.0%
TGATTCATATGGGTAGAACA+TGG - Chr4:374931-374950 None:intergenic 35.0%
TGGAACTATATCACAGTATG+CGG + Chr4:375788-375807 MsG0480018115.01.T01:intron 35.0%
TGTGACAATGAAGATGATGA+TGG + Chr4:377055-377074 MsG0480018115.01.T01:CDS 35.0%
TTATGAAAGACGGGAAACAT+TGG + Chr4:374583-374602 MsG0480018115.01.T01:intron 35.0%
! ATGATAAAGTTTCTGGACAG+TGG + Chr4:375115-375134 MsG0480018115.01.T01:CDS 35.0%
! ATGCAAATTTTCAGAAGTCG+AGG - Chr4:374893-374912 None:intergenic 35.0%
! CCAATTCTAGTCTTCTACTA+AGG + Chr4:376524-376543 MsG0480018115.01.T01:intron 35.0%
! CTCTTTTTGCAGATTAGAGT+TGG + Chr4:374233-374252 MsG0480018115.01.T01:intron 35.0%
! TGCTCATGAAGTATCTAGTA+TGG + Chr4:376960-376979 MsG0480018115.01.T01:intron 35.0%
! TGTTTTGCTACTCCAGTTAA+CGG - Chr4:375174-375193 None:intergenic 35.0%
! TTATTACTTGTTGCCAGACA+CGG - Chr4:376421-376440 None:intergenic 35.0%
!! AGGAGTGCAATCATTTTTAC+GGG - Chr4:374821-374840 None:intergenic 35.0%
!! CAATGAAGATGATGATGGTA+TGG + Chr4:377060-377079 MsG0480018115.01.T01:CDS 35.0%
!! CTCTTATTTGCTATGAAGCA+CGG - Chr4:376242-376261 None:intergenic 35.0%
!! CTGGATTTTGAGGATATACA+TGG - Chr4:374262-374281 None:intergenic 35.0%
!! GAAAATGTTGTCGGTTTAGA+CGG + Chr4:375640-375659 MsG0480018115.01.T01:intron 35.0%
!! GTATTTATTTTCAGGCTGCT+TGG + Chr4:376999-377018 MsG0480018115.01.T01:intron 35.0%
!!! AATTGGTGCTAAACTGCTTT+TGG - Chr4:376510-376529 None:intergenic 35.0%
!!! TAGTTCATGACTGGTTTTAG+AGG + Chr4:374475-374494 MsG0480018115.01.T01:intron 35.0%
AACTAAGTAGTTTCGAAGCG+GGG + Chr4:374644-374663 MsG0480018115.01.T01:intron 40.0%
ACAGAGAACTCAACAACACA+AGG + Chr4:375347-375366 MsG0480018115.01.T01:intron 40.0%
ACCTAAACATGGCTGTAAAC+TGG + Chr4:374022-374041 MsG0480018115.01.T01:intron 40.0%
ATATGGGTAGAACATGGCAT+AGG - Chr4:374925-374944 None:intergenic 40.0%
ATGACTAACTCTCTGGATGA+TGG + Chr4:374511-374530 MsG0480018115.01.T01:intron 40.0%
CAGTTATATGGCAAAATGCC+AGG - Chr4:374141-374160 None:intergenic 40.0%
CCTAAACATGGCTGTAAACT+GGG + Chr4:374023-374042 MsG0480018115.01.T01:intron 40.0%
GAACTAAGTAGTTTCGAAGC+GGG + Chr4:374643-374662 MsG0480018115.01.T01:intron 40.0%
GGACAGTGGTTTACAACTAA+TGG + Chr4:375129-375148 MsG0480018115.01.T01:CDS 40.0%
GGAGAAGAAGTAGATGCTAA+AGG - Chr4:375380-375399 None:intergenic 40.0%
GTAAATCTAAGTACGCCTGT+TGG - Chr4:374610-374629 None:intergenic 40.0%
GTTTCTTATCTTGTGCCCTT+GGG - Chr4:376739-376758 None:intergenic 40.0%
TATTTAGATCACGATGGCGA+TGG + Chr4:377127-377146 MsG0480018115.01.T01:CDS 40.0%
TGCTTTGTAAACCTGGAAAG+TGG + Chr4:374968-374987 MsG0480018115.01.T01:intron 40.0%
TGGTTGAGTTAGTTCATGAC+TGG + Chr4:374466-374485 MsG0480018115.01.T01:intron 40.0%
TGTAGTGAACTAGAGAGAGA+AGG + Chr4:374728-374747 MsG0480018115.01.T01:intron 40.0%
TTGTACCCCATATCAATACC+CGG + Chr4:376658-376677 MsG0480018115.01.T01:intron 40.0%
TTTCTTATCTTGTGCCCTTG+GGG - Chr4:376738-376757 None:intergenic 40.0%
! AAAACAGTTAGCCACTTTCC+AGG - Chr4:374982-375001 None:intergenic 40.0%
! AAACATACCTTTTCAGCCTG+AGG - Chr4:375482-375501 None:intergenic 40.0%
! ATGGTGTTGGATGAAGTAGA+TGG + Chr4:377079-377098 MsG0480018115.01.T01:CDS 40.0%
! CACCATACAGCTTAAGCTTT+TGG + Chr4:374446-374465 MsG0480018115.01.T01:intron 40.0%
! CATGCTAACTTGTGCCTTTA+GGG - Chr4:376878-376897 None:intergenic 40.0%
! TACTTCTTCTCCTGTGGTTT+TGG + Chr4:375388-375407 MsG0480018115.01.T01:intron 40.0%
! TCATGCTAACTTGTGCCTTT+AGG - Chr4:376879-376898 None:intergenic 40.0%
! TGGTGTTGGATGAAGTAGAT+GGG + Chr4:377080-377099 MsG0480018115.01.T01:CDS 40.0%
!! AGATGATGATGGTATGGTGT+TGG + Chr4:377066-377085 MsG0480018115.01.T01:CDS 40.0%
!! CTTCTTAACTTGTGCCCTAA+AGG + Chr4:376861-376880 MsG0480018115.01.T01:intron 40.0%
!! GGAGTGCAATCATTTTTACG+GGG - Chr4:374820-374839 None:intergenic 40.0%
!!! ACTGGTTTTAGAGGAGAAAC+AGG + Chr4:374484-374503 MsG0480018115.01.T01:intron 40.0%
!!! CTGGTTTTAGAGGAGAAACA+GGG + Chr4:374485-374504 MsG0480018115.01.T01:intron 40.0%
!!! TCTCTGGATGATGGAGTTTT+TGG + Chr4:374520-374539 MsG0480018115.01.T01:intron 40.0%
!!! TGGTTTTAGAGGAGAAACAG+GGG + Chr4:374486-374505 MsG0480018115.01.T01:intron 40.0%
AACGGAAGCTGAAATGGCAA+AGG - Chr4:376396-376415 None:intergenic 45.0%
AATTTCGTCCACTGCAGCAA+CGG - Chr4:374560-374579 None:intergenic 45.0%
ACAAAAGTCAGACTACGTGC+TGG + Chr4:373867-373886 MsG0480018115.01.T01:CDS 45.0%
ACGGGCGAGAGATACATAAT+GGG - Chr4:374179-374198 None:intergenic 45.0%
AGAGAAGGTAGAGTCACAAG+GGG + Chr4:374743-374762 MsG0480018115.01.T01:intron 45.0%
AGAGAGAAGGTAGAGTCACA+AGG + Chr4:374741-374760 MsG0480018115.01.T01:intron 45.0%
AGCATCTACTTCTTCTCCTG+TGG + Chr4:375382-375401 MsG0480018115.01.T01:intron 45.0%
AGGGGAAATGACTAACTCTC+TGG + Chr4:374504-374523 MsG0480018115.01.T01:intron 45.0%
CAAGAATACAAGCGCATACC+TGG + Chr4:376306-376325 MsG0480018115.01.T01:intron 45.0%
CCCAGTTTACAGCCATGTTT+AGG - Chr4:374026-374045 None:intergenic 45.0%
CTGAAGCTGAAGTTCATACC+TGG + Chr4:374120-374139 MsG0480018115.01.T01:intron 45.0%
CTTGCTGATGCACCTAAACA+TGG + Chr4:374011-374030 MsG0480018115.01.T01:intron 45.0%
GAGAGAAGGTAGAGTCACAA+GGG + Chr4:374742-374761 MsG0480018115.01.T01:intron 45.0%
GATGGAGCTTCACTAAGACT+TGG + Chr4:377145-377164 MsG0480018115.01.T01:CDS 45.0%
GGTTCATAACATGTGGCATG+AGG - Chr4:373961-373980 None:intergenic 45.0%
GGTTTCTTATCTTGTGCCCT+TGG - Chr4:376740-376759 None:intergenic 45.0%
GTAGAACATGGCATAGGTGT+GGG - Chr4:374919-374938 None:intergenic 45.0%
TAAGCTACGAAGCACGGATA+CGG + Chr4:376079-376098 MsG0480018115.01.T01:intron 45.0%
TACGGGCGAGAGATACATAA+TGG - Chr4:374180-374199 None:intergenic 45.0%
TACTCATTTCCCTCTTGACC+TGG - Chr4:377109-377128 None:intergenic 45.0%
TGTACCCCATATCAATACCC+GGG + Chr4:376659-376678 MsG0480018115.01.T01:intron 45.0%
! AAATGCTAACTTGTGCCCCA+AGG + Chr4:376720-376739 MsG0480018115.01.T01:intron 45.0%
! AATGCTAACTTGTGCCCCAA+GGG + Chr4:376721-376740 MsG0480018115.01.T01:intron 45.0%
! GATGAAGTAGATGGGTTTCC+AGG + Chr4:377088-377107 MsG0480018115.01.T01:CDS 45.0%
! GGACTTCCGATGTTTAGAAC+TGG - Chr4:374281-374300 None:intergenic 45.0%
! TTTGCCATTTCAGCTTCCGT+TGG + Chr4:376395-376414 MsG0480018115.01.T01:intron 45.0%
!! ATGATGCCCGGGTATTGATA+TGG - Chr4:376668-376687 None:intergenic 45.0%
!! ATGTTGTCGGTTTAGACGGT+AGG + Chr4:375644-375663 MsG0480018115.01.T01:intron 45.0%
!! TGATGCCCGGGTATTGATAT+GGG - Chr4:376667-376686 None:intergenic 45.0%
!! TGTTGATGACTCTGATGACG+AGG + Chr4:377024-377043 MsG0480018115.01.T01:CDS 45.0%
AACATGGCTGTAAACTGGGC+AGG + Chr4:374027-374046 MsG0480018115.01.T01:intron 50.0%
AATACCCGGGCATCATAGCA+AGG + Chr4:376672-376691 MsG0480018115.01.T01:intron 50.0%
AATCAAGTCCGTTGCTGCAG+TGG + Chr4:374549-374568 MsG0480018115.01.T01:intron 50.0%
AGAAAGAGGAAGCTTCCTGC+TGG - Chr4:376344-376363 None:intergenic 50.0%
ATCCTTCACCTCAGCTGTGT+TGG + Chr4:375444-375463 MsG0480018115.01.T01:CDS 50.0%
CCATCATCCTCAGGCTGAAA+AGG + Chr4:375472-375491 MsG0480018115.01.T01:CDS 50.0%
GGTAGAACATGGCATAGGTG+TGG - Chr4:374920-374939 None:intergenic 50.0%
TAGAGTCACAAGGGGATCAC+TGG + Chr4:374751-374770 MsG0480018115.01.T01:intron 50.0%
TATGAAGCACGGACACTCCT+TGG - Chr4:376231-376250 None:intergenic 50.0%
TGCTGGCACTTCAGAATACC+AGG - Chr4:376327-376346 None:intergenic 50.0%
TGGAGTAGCAAAACAGCCCA+AGG + Chr4:375179-375198 MsG0480018115.01.T01:CDS 50.0%
TGTTGAAGGCAATTCGGCAC+TGG + Chr4:373809-373828 MsG0480018115.01.T01:CDS 50.0%
TTGCGTACGCATACTGCAAG+AGG - Chr4:375921-375940 None:intergenic 50.0%
! AGATGGGTTTCCAGGTCAAG+AGG + Chr4:377096-377115 MsG0480018115.01.T01:CDS 50.0%
! CCTTTTCAGCCTGAGGATGA+TGG - Chr4:375475-375494 None:intergenic 50.0%
! GATGGGTTTCCAGGTCAAGA+GGG + Chr4:377097-377116 MsG0480018115.01.T01:CDS 50.0%
! TCCTTGGATTAGGTGTGTCC+CGG - Chr4:376215-376234 None:intergenic 50.0%
! TGACTCTGATGACGAGGAGT+CGG + Chr4:377030-377049 MsG0480018115.01.T01:CDS 50.0%
!! GATGCCCGGGTATTGATATG+GGG - Chr4:376666-376685 None:intergenic 50.0%
!! TGGTATTCTGAAGTGCCAGC+AGG + Chr4:376326-376345 MsG0480018115.01.T01:intron 50.0%
ACATGACACGTGTCCGACAC+CGG + Chr4:376193-376212 MsG0480018115.01.T01:intron 55.0%
ACCGGGACACACCTAATCCA+AGG + Chr4:376211-376230 MsG0480018115.01.T01:intron 55.0%
ACGAAGCACGGATACGGACA+CGG + Chr4:376085-376104 MsG0480018115.01.T01:intron 55.0%
ACGGCCAACGGAAGCTGAAA+TGG - Chr4:376402-376421 None:intergenic 55.0%
ACGGGAAACATTGGGCCAAC+AGG + Chr4:374592-374611 MsG0480018115.01.T01:intron 55.0%
AGCCAACACAGCTGAGGTGA+AGG - Chr4:375449-375468 None:intergenic 55.0%
GATTAGGTGTGTCCCGGTGT+CGG - Chr4:376209-376228 None:intergenic 55.0%
GCACGGACACTCCTTGGATT+AGG - Chr4:376225-376244 None:intergenic 55.0%
GTTTCGAAGCGGGGAGTAAC+AGG + Chr4:374653-374672 MsG0480018115.01.T01:intron 55.0%
TTGGCTGGACCATCATCCTC+AGG + Chr4:375463-375482 MsG0480018115.01.T01:CDS 55.0%
TTGTTGCCAGACACGGCCAA+CGG - Chr4:376414-376433 None:intergenic 55.0%
! ACCTCCTTGCTATGATGCCC+GGG - Chr4:376679-376698 None:intergenic 55.0%
! GACCTCCTTGCTATGATGCC+CGG - Chr4:376680-376699 None:intergenic 55.0%
! TATTAGCTGTGTCGGCGTGC+CGG - Chr4:376114-376133 None:intergenic 55.0%
! TTCACCTCAGCTGTGTTGGC+TGG + Chr4:375448-375467 MsG0480018115.01.T01:CDS 55.0%
!! TACGAGTGTCGGTGTCGTGT+CGG + Chr4:376164-376183 MsG0480018115.01.T01:intron 55.0%
ACCCGGGCATCATAGCAAGG+AGG + Chr4:376675-376694 MsG0480018115.01.T01:intron 60.0%
ACGGATACGGACACGGACAC+CGG + Chr4:376092-376111 MsG0480018115.01.T01:intron 60.0%
CATGACACGTGTCCGACACC+GGG + Chr4:376194-376213 MsG0480018115.01.T01:intron 60.0%
TGGTCCAGCCAACACAGCTG+AGG - Chr4:375455-375474 None:intergenic 60.0%
!! TGTCGGTGTCGTGTCGGTGT+TGG + Chr4:376170-376189 MsG0480018115.01.T01:intron 60.0%
CAGCTTCCGTTGGCCGTGTC+TGG + Chr4:376405-376424 MsG0480018115.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 373808 377237 373808 ID=MsG0480018115.01;Name=MsG0480018115.01
Chr4 mRNA 373808 377237 373808 ID=MsG0480018115.01.T01;Parent=MsG0480018115.01;Name=MsG0480018115.01.T01;_AED=0.49;_eAED=0.52;_QI=0|1|0.6|1|1|1|5|0|175
Chr4 exon 373808 373888 373808 ID=MsG0480018115.01.T01:exon:325;Parent=MsG0480018115.01.T01
Chr4 exon 374245 374320 374245 ID=MsG0480018115.01.T01:exon:326;Parent=MsG0480018115.01.T01
Chr4 exon 375109 375200 375109 ID=MsG0480018115.01.T01:exon:327;Parent=MsG0480018115.01.T01
Chr4 exon 375440 375493 375440 ID=MsG0480018115.01.T01:exon:328;Parent=MsG0480018115.01.T01
Chr4 exon 377013 377237 377013 ID=MsG0480018115.01.T01:exon:329;Parent=MsG0480018115.01.T01
Chr4 CDS 373808 373888 373808 ID=MsG0480018115.01.T01:cds;Parent=MsG0480018115.01.T01
Chr4 CDS 374245 374320 374245 ID=MsG0480018115.01.T01:cds;Parent=MsG0480018115.01.T01
Chr4 CDS 375109 375200 375109 ID=MsG0480018115.01.T01:cds;Parent=MsG0480018115.01.T01
Chr4 CDS 375440 375493 375440 ID=MsG0480018115.01.T01:cds;Parent=MsG0480018115.01.T01
Chr4 CDS 377013 377237 377013 ID=MsG0480018115.01.T01:cds;Parent=MsG0480018115.01.T01
Gene Sequence

>MsG0480018115.01.T01

ATGTTGAAGGCAATTCGGCACTGGAAAGCTCTTGTGCGTGTAGCAATTAGTGAAGCACAACAAAAGTCAGACTACGTGCTGATTAGAGTTGGTGCCCATGTATATCCTCAAAATCCAGTTCTAAACATCGGAAGTCCTATTAACTTGAGCATAAAAGGATTGAATGATAAAGTTTCTGGACAGTGGTTTACAACTAATGGAAGTTTAATATCAGTAGATCCGTTAACTGGAGTAGCAAAACAGCCCAAGAATCATCCTTCACCTCAGCTGTGTTGGCTGGACCATCATCCTCAGGCTGAAAAGGCTGCTTGGATTGTTGATGACTCTGATGACGAGGAGTCGGACTGTGACAATGAAGATGATGATGGTATGGTGTTGGATGAAGTAGATGGGTTTCCAGGTCAAGAGGGAAATGAGTATTTAGATCACGATGGCGATGGAGCTTCACTAAGACTTGGAGATTCTGAAGATGAAACTGACAATGATTCAGTGATGATGGTGAGCTTGTTAATACTTTTGCAACTCTAA
Protein sequence

>MsG0480018115.01.T01

MLKAIRHWKALVRVAISEAQQKSDYVLIRVGAHVYPQNPVLNIGSPINLSIKGLNDKVSGQWFTTNGSLISVDPLTGVAKQPKNHPSPQLCWLDHHPQAEKAAWIVDDSDDEESDCDNEDDDGMVLDEVDGFPGQEGNEYLDHDGDGASLRLGDSEDETDNDSVMMVSLLILLQL*