AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018353.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018353.01.T02 MTR_4g010270 82.955 88 12 1 16 103 40 124 1.06e-30 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 35 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGGATGACTCTATTCTTT+TGG 0.183042 4:-3695325 MsG0480018353.01.T01:exon
ATCTGAGTCATTCATCATTT+TGG 0.183435 4:-3698041 None:intergenic
TGAATTATTATCTATAAGTT+AGG 0.263435 4:-3695216 MsG0480018353.01.T01:three_prime_UTR
GTTCCATTTCGAGGCATTTC+AGG 0.268459 4:+3698010 None:intergenic
CTAAACTTTGATCCCTTGTT+TGG 0.274078 4:+3695275 None:intergenic
TTTGGGCTTCTGCATGGGAT+GGG 0.355396 4:-3695307 MsG0480018353.01.T01:three_prime_UTR
TCATGTGGTGGTGGAGGAGT+TGG 0.357995 4:+3697846 None:intergenic
GAATTATTATCTATAAGTTA+GGG 0.374032 4:-3695215 MsG0480018353.01.T01:three_prime_UTR
GGGTCGGGGTCATGTGGTGG+TGG 0.376787 4:+3697837 None:intergenic
TCGGGGTCATGTGGTGGTGG+AGG 0.378966 4:+3697840 None:intergenic
GGTGGGTCGGGGTCATGTGG+TGG 0.428338 4:+3697834 None:intergenic
GGTGGTGGGTCGGGGTCATG+TGG 0.433818 4:+3697831 None:intergenic
CAACCTGAAATGCCTCGAAA+TGG 0.440314 4:-3698013 MsG0480018353.01.T01:exon
GCGAAGACGACGGAGGGAAG+TGG 0.447082 4:+3697884 None:intergenic
AAGGAGAAGGAGAGAGAGTG+TGG 0.452127 4:+3697957 None:intergenic
GGGCTTCTGCATGGGATGGG+AGG 0.455888 4:-3695304 MsG0480018353.01.T01:three_prime_UTR
GATTTACAAGTTCCATTTCG+AGG 0.468059 4:+3698001 None:intergenic
AATGAATCAACTGAACTTCA+AGG 0.468879 4:-3697804 MsG0480018353.01.T01:intron
AGAGAGAGAAGTGAAGAAGA+AGG 0.495318 4:+3697938 None:intergenic
GCGGCAGCGAAGACGACGGA+GGG 0.517868 4:+3697878 None:intergenic
ACATGACCCCGACCCACCAC+CGG 0.520766 4:-3697829 MsG0480018353.01.T01:CDS
AGAAGTGAAGAAGAAGGAGA+AGG 0.546622 4:+3697944 None:intergenic
CGCGGCAGCGAAGACGACGG+AGG 0.567872 4:+3697877 None:intergenic
TGGTGGAGGAGTTGGTGATG+CGG 0.568003 4:+3697854 None:intergenic
GTGGAAGAGATGAAGAATCG+TGG 0.578305 4:+3697976 None:intergenic
AAGACGACGGAGGGAAGTGG+AGG 0.580183 4:+3697887 None:intergenic
GGGACAAAATTATAAAGCAA+AGG 0.583264 4:-3695193 MsG0480018353.01.T01:three_prime_UTR
ATTATTATCTATAAGTTAGG+GGG 0.585809 4:-3695213 MsG0480018353.01.T01:three_prime_UTR
TGGGAGGAATAGACCAAACA+AGG 0.609905 4:-3695288 MsG0480018353.01.T01:three_prime_UTR
CGGCGCGGCAGCGAAGACGA+CGG 0.614388 4:+3697874 None:intergenic
AAGAGAGCGGTTGAAATGAA+CGG 0.620497 4:+3697913 None:intergenic
AATTATTATCTATAAGTTAG+GGG 0.638939 4:-3695214 MsG0480018353.01.T01:three_prime_UTR
GAAGTGGAGGAAGAAGAGAG+CGG 0.663486 4:+3697900 None:intergenic
GAGGAGTTGGTGATGCGGCG+CGG 0.681777 4:+3697859 None:intergenic
GGGAGGAATAGACCAAACAA+GGG 0.717910 4:-3695287 MsG0480018353.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAATTAAGATAAAGTTAA+AGG - Chr4:3695916-3695935 MsG0480018353.01.T01:intron 15.0%
!! AATTATTATCTATAAGTTAG+GGG - Chr4:3697947-3697966 MsG0480018353.01.T01:CDS 15.0%
!! GAATTATTATCTATAAGTTA+GGG - Chr4:3697946-3697965 MsG0480018353.01.T01:CDS 15.0%
!! TGAATTATTATCTATAAGTT+AGG - Chr4:3697945-3697964 MsG0480018353.01.T01:CDS 15.0%
!! TTAACTTTATCTTAATTCTT+CGG + Chr4:3695916-3695935 None:intergenic 15.0%
!!! AATATAATTTGACTTTCTTT+TGG - Chr4:3695550-3695569 MsG0480018353.01.T01:intron 15.0%
!!! TATGATATTTTTCTAAATCA+GGG - Chr4:3697589-3697608 MsG0480018353.01.T01:intron 15.0%
!!! TTATCACTTTCTTTTTTATT+CGG - Chr4:3697459-3697478 MsG0480018353.01.T01:intron 15.0%
!!! TTATGATATTTTTCTAAATC+AGG - Chr4:3697588-3697607 MsG0480018353.01.T01:intron 15.0%
!! AAAAGAAAGTGATAATTCAA+AGG + Chr4:3697454-3697473 None:intergenic 20.0%
!! AAAGGACTAATATCAAAATA+AGG + Chr4:3697436-3697455 None:intergenic 20.0%
!! AAGGACTAATATCAAAATAA+GGG + Chr4:3697435-3697454 None:intergenic 20.0%
!! AATTAAGATAAAGTTAAAGG+TGG - Chr4:3695919-3695938 MsG0480018353.01.T01:intron 20.0%
!! AGTTAACTTTACAATTAAAG+AGG + Chr4:3697527-3697546 None:intergenic 20.0%
!! ATCTTGCAAAATACAAAATA+AGG + Chr4:3696707-3696726 None:intergenic 20.0%
!! ATTAAAGTGAAAACAAACAA+TGG + Chr4:3696307-3696326 None:intergenic 20.0%
!! ATTATTATCTATAAGTTAGG+GGG - Chr4:3697948-3697967 MsG0480018353.01.T01:CDS 20.0%
!! CCATTTATTAGTTATCAAAA+TGG - Chr4:3695874-3695893 MsG0480018353.01.T01:intron 20.0%
!! GAATTATTATGATGTTATGT+TGG - Chr4:3696167-3696186 MsG0480018353.01.T01:intron 20.0%
!! GTTAACTTTACAATTAAAGA+GGG + Chr4:3697526-3697545 None:intergenic 20.0%
!! TTTAATTGTAAAGTTAACTG+AGG - Chr4:3697528-3697547 MsG0480018353.01.T01:intron 20.0%
!!! AAACATTTTCCATTTATGTT+TGG + Chr4:3696547-3696566 None:intergenic 20.0%
!!! AACTTTTAAAACTTATTCTC+GGG + Chr4:3696780-3696799 None:intergenic 20.0%
!!! AATGAACTCTTAGTTTTTTA+AGG - Chr4:3696426-3696445 MsG0480018353.01.T01:intron 20.0%
!!! AGTTTTTTAAGGATATGTTT+GGG - Chr4:3696437-3696456 MsG0480018353.01.T01:intron 20.0%
!!! CCATTTTGATAACTAATAAA+TGG + Chr4:3695877-3695896 None:intergenic 20.0%
!!! GAACTTTTAAAACTTATTCT+CGG + Chr4:3696781-3696800 None:intergenic 20.0%
!!! TAGAATGTAGATTTTATTGA+AGG - Chr4:3696740-3696759 MsG0480018353.01.T01:intron 20.0%
!!! TAGTTTTTTAAGGATATGTT+TGG - Chr4:3696436-3696455 MsG0480018353.01.T01:intron 20.0%
!!! TCTATCTTGAAATTTTGATA+AGG + Chr4:3697791-3697810 None:intergenic 20.0%
!!! TTATTTTTGTACCTTTTCTA+AGG - Chr4:3696217-3696236 MsG0480018353.01.T01:intron 20.0%
! AAGGATACTCTAATTCATTA+TGG - Chr4:3696882-3696901 MsG0480018353.01.T01:intron 25.0%
! AATAATTATCAAGGACATTG+TGG + Chr4:3697399-3697418 None:intergenic 25.0%
! ACAAGAATTAGAATAGTTTG+TGG - Chr4:3695524-3695543 MsG0480018353.01.T01:intron 25.0%
! ATGAATATTAGTGTTTCGAA+AGG - Chr4:3695769-3695788 MsG0480018353.01.T01:intron 25.0%
! ATTCGTAACGGTTAAATAAA+AGG - Chr4:3695742-3695761 MsG0480018353.01.T01:intron 25.0%
! CAAGAAAAAAACGAAAGAAT+AGG - Chr4:3696802-3696821 MsG0480018353.01.T01:intron 25.0%
! GTTCTACTCAATAATTATCA+AGG + Chr4:3697408-3697427 None:intergenic 25.0%
! TATTACATTTCGATAGTTCA+GGG + Chr4:3697486-3697505 None:intergenic 25.0%
! TCAAGTGTAAATCTTCAATT+TGG + Chr4:3697647-3697666 None:intergenic 25.0%
! TGAAACTGTTAACAGATATA+GGG - Chr4:3696261-3696280 MsG0480018353.01.T01:intron 25.0%
! TTATTACATTTCGATAGTTC+AGG + Chr4:3697487-3697506 None:intergenic 25.0%
! TTCAAAATTATTCCATTCCA+TGG + Chr4:3696150-3696169 None:intergenic 25.0%
! TTCGTAACGGTTAAATAAAA+GGG - Chr4:3695743-3695762 MsG0480018353.01.T01:intron 25.0%
!! AATTAAAGAGGGAATAGTTT+TGG + Chr4:3697515-3697534 None:intergenic 25.0%
!! AGAAAATAACAAGCATTGTA+TGG + Chr4:3696839-3696858 None:intergenic 25.0%
!! TGCTATTTAGTAGAAAGTAT+TGG - Chr4:3696032-3696051 MsG0480018353.01.T01:intron 25.0%
!! TGTTGATCTTTTATTCTTGT+TGG - Chr4:3697286-3697305 MsG0480018353.01.T01:intron 25.0%
!! TTTCAAGTGATATTTATGTG+TGG + Chr4:3695623-3695642 None:intergenic 25.0%
!! TTTTCCATTTATGTTTGGAT+TGG + Chr4:3696542-3696561 None:intergenic 25.0%
!!! ATTTTAGTTGAAACGATCTT+TGG - Chr4:3696987-3697006 MsG0480018353.01.T01:intron 25.0%
!!! ATTTTCTGAGAATAAGTCTT+TGG - Chr4:3696852-3696871 MsG0480018353.01.T01:intron 25.0%
!!! GATTTTCAAGTAATGATTCA+TGG - Chr4:3695847-3695866 MsG0480018353.01.T01:intron 25.0%
!!! GCTAGTTAGATTTTTTGAAA+TGG + Chr4:3696502-3696521 None:intergenic 25.0%
AAACAGATTCACACAACATA+AGG + Chr4:3695500-3695519 None:intergenic 30.0%
AACAGATTCACACAACATAA+GGG + Chr4:3695499-3695518 None:intergenic 30.0%
AATGAATCAACTGAACTTCA+AGG - Chr4:3695357-3695376 MsG0480018353.01.T01:CDS 30.0%
ATAAAGTTAAAGGTGGAGTT+TGG - Chr4:3695926-3695945 MsG0480018353.01.T01:intron 30.0%
ATACACAGTTTCTATCTGTT+AGG - Chr4:3697675-3697694 MsG0480018353.01.T01:intron 30.0%
CAAATAGGAGAGAGAATAAT+AGG - Chr4:3697614-3697633 MsG0480018353.01.T01:intron 30.0%
CTATTATTCTCTCTCCTATT+TGG + Chr4:3697616-3697635 None:intergenic 30.0%
CTGAAACTGTTAACAGATAT+AGG - Chr4:3696260-3696279 MsG0480018353.01.T01:intron 30.0%
GATGATTTGAAAATAGCGTA+AGG - Chr4:3697560-3697579 MsG0480018353.01.T01:intron 30.0%
GGGACAAAATTATAAAGCAA+AGG - Chr4:3697968-3697987 MsG0480018353.01.T01:CDS 30.0%
TATCACTTGAAACTTCTACT+AGG - Chr4:3695631-3695650 MsG0480018353.01.T01:intron 30.0%
TGAAAACAAACAATGGAAAC+AGG + Chr4:3696300-3696319 None:intergenic 30.0%
TGGTTGAATTGAACTTCAAA+GGG - Chr4:3695570-3695589 MsG0480018353.01.T01:intron 30.0%
TGTTTCCAAATCCTTAGAAA+AGG + Chr4:3696231-3696250 None:intergenic 30.0%
TTGGAAAATAGCGTCTATAA+CGG - Chr4:3696051-3696070 MsG0480018353.01.T01:intron 30.0%
TTGGTTGAATTGAACTTCAA+AGG - Chr4:3695569-3695588 MsG0480018353.01.T01:intron 30.0%
TTTGACAAATCGTGTTTGTT+TGG - Chr4:3696004-3696023 MsG0480018353.01.T01:intron 30.0%
! ATAAGTCTTTGGCTCATAAA+AGG - Chr4:3696863-3696882 MsG0480018353.01.T01:intron 30.0%
! GACAAGATCTTTTTCTTTTG+AGG - Chr4:3697748-3697767 MsG0480018353.01.T01:intron 30.0%
! GTGGTATTGAATAAAAACGA+AGG + Chr4:3697380-3697399 None:intergenic 30.0%
!! AGTTCAGTTGATTCATTTTC+CGG + Chr4:3695354-3695373 None:intergenic 30.0%
!! TTGTACCTTTTCTAAGGATT+TGG - Chr4:3696223-3696242 MsG0480018353.01.T01:intron 30.0%
!! TTTCTAGTTTCTACTACCTT+GGG + Chr4:3695674-3695693 None:intergenic 30.0%
!! TTTTAAGGATATGTTTGGGT+TGG - Chr4:3696441-3696460 MsG0480018353.01.T01:intron 30.0%
!! TTTTCTAAGGATTTGGAAAC+AGG - Chr4:3696230-3696249 MsG0480018353.01.T01:intron 30.0%
!!! CTATGAGCTTTTGTTTTGAA+AGG - Chr4:3695796-3695815 MsG0480018353.01.T01:intron 30.0%
!!! TTGTTTTGAAAGGATGACAT+CGG - Chr4:3695806-3695825 MsG0480018353.01.T01:intron 30.0%
AATGTCAAACATGATGGTCA+CGG + Chr4:3696652-3696671 None:intergenic 35.0%
ACCACCAATCCAAACATAAA+TGG - Chr4:3696535-3696554 MsG0480018353.01.T01:intron 35.0%
ACTTCAAAGGGATAAGAGTT+AGG - Chr4:3695582-3695601 MsG0480018353.01.T01:intron 35.0%
CATAAGCGCAAATAATGTTG+TGG + Chr4:3696622-3696641 None:intergenic 35.0%
CTAAACTTTGATCCCTTGTT+TGG + Chr4:3697889-3697908 None:intergenic 35.0%
CTTTATCTTAATTCTTCGGC+AGG + Chr4:3695912-3695931 None:intergenic 35.0%
GACATGCATACTATATGCAT+TGG - Chr4:3697329-3697348 MsG0480018353.01.T01:intron 35.0%
GATCTGCAATTGACAACATT+GGG - Chr4:3696123-3696142 MsG0480018353.01.T01:intron 35.0%
GATTTACAAGTTCCATTTCG+AGG + Chr4:3695163-3695182 None:intergenic 35.0%
GCCTCTATATAACAACACAA+CGG + Chr4:3695959-3695978 None:intergenic 35.0%
GTGTTTATGCTTCTATAGCA+AGG - Chr4:3697708-3697727 MsG0480018353.01.T01:intron 35.0%
TATACTACACCTGACAAGAA+TGG + Chr4:3697181-3697200 None:intergenic 35.0%
TCACTGAATGTCAAACATGA+TGG + Chr4:3696658-3696677 None:intergenic 35.0%
TGACTTTGTCTTAGCTAGTT+TGG + Chr4:3696950-3696969 None:intergenic 35.0%
TGTTGTGGCATTTCTTAAGA+CGG + Chr4:3696607-3696626 None:intergenic 35.0%
TTCTAAATCAGGGACCAAAT+AGG - Chr4:3697599-3697618 MsG0480018353.01.T01:intron 35.0%
! CTGGATGACTCTATTCTTTT+GGG - Chr4:3697837-3697856 MsG0480018353.01.T01:CDS 35.0%
! GACTTTGTCTTAGCTAGTTT+GGG + Chr4:3696949-3696968 None:intergenic 35.0%
! TCCATTTATGTTTGGATTGG+TGG + Chr4:3696539-3696558 None:intergenic 35.0%
! TCCGTTGTGTTGTTATATAG+AGG - Chr4:3695955-3695974 MsG0480018353.01.T01:intron 35.0%
! TCTGGATGACTCTATTCTTT+TGG - Chr4:3697836-3697855 MsG0480018353.01.T01:CDS 35.0%
! TTAAAGGTGGAGTTTGGTTT+AGG - Chr4:3695932-3695951 MsG0480018353.01.T01:intron 35.0%
!! ATCTTTTTCTTTTGAGGAGC+AGG - Chr4:3697754-3697773 MsG0480018353.01.T01:intron 35.0%
!! GTCGTTTGTTTTCACTTTAG+TGG - Chr4:3696371-3696390 MsG0480018353.01.T01:intron 35.0%
!! GTTTCTAGTTTCTACTACCT+TGG + Chr4:3695675-3695694 None:intergenic 35.0%
!!! TCTTCTTTGCTGTTCTTTTC+TGG - Chr4:3697818-3697837 MsG0480018353.01.T01:CDS 35.0%
!!! TGCTACACTGTAGTCTTTTT+TGG - Chr4:3697149-3697168 MsG0480018353.01.T01:intron 35.0%
AAGAGAGCGGTTGAAATGAA+CGG + Chr4:3695251-3695270 None:intergenic 40.0%
AATTGACAACATTGGGTCCA+TGG - Chr4:3696130-3696149 MsG0480018353.01.T01:intron 40.0%
ACTACCTTGGGTGAATATTG+TGG + Chr4:3695662-3695681 None:intergenic 40.0%
AGAAGTGAAGAAGAAGGAGA+AGG + Chr4:3695220-3695239 None:intergenic 40.0%
AGAGAGAGAAGTGAAGAAGA+AGG + Chr4:3695226-3695245 None:intergenic 40.0%
AGTCGCTATTGTTACGCAAT+AGG + Chr4:3697119-3697138 None:intergenic 40.0%
CGATCTGCAATTGACAACAT+TGG - Chr4:3696122-3696141 MsG0480018353.01.T01:intron 40.0%
CTACCTTGGGTGAATATTGT+GGG + Chr4:3695661-3695680 None:intergenic 40.0%
CTATAGCAAGGCGTAACTTT+CGG - Chr4:3697720-3697739 MsG0480018353.01.T01:intron 40.0%
TACCTTGGGTGAATATTGTG+GGG + Chr4:3695660-3695679 None:intergenic 40.0%
TCCATAACGCTATTGCATAG+CGG - Chr4:3695979-3695998 MsG0480018353.01.T01:intron 40.0%
! ATTCTTTTGGGCTTCTGCAT+GGG - Chr4:3697849-3697868 MsG0480018353.01.T01:CDS 40.0%
! CTATCTGTTAGGCTTTAGTG+TGG - Chr4:3697686-3697705 MsG0480018353.01.T01:intron 40.0%
! GACAGTGACTTGATTCGTAA+CGG - Chr4:3695730-3695749 MsG0480018353.01.T01:intron 40.0%
! GTAGCGGAATTTGAACAAAC+TGG - Chr4:3696090-3696109 MsG0480018353.01.T01:intron 40.0%
! TATTCTTTTGGGCTTCTGCA+TGG - Chr4:3697848-3697867 MsG0480018353.01.T01:CDS 40.0%
! TGGATTTTGTGTTCTAGCCT+CGG - Chr4:3697306-3697325 MsG0480018353.01.T01:intron 40.0%
! TTGATTCATTTTCCGGTGGT+GGG + Chr4:3695347-3695366 None:intergenic 40.0%
!! ATGTTTGGGTTGGTGGTATT+GGG - Chr4:3696451-3696470 MsG0480018353.01.T01:intron 40.0%
!! TAAGGATATGTTTGGGTTGG+TGG - Chr4:3696444-3696463 MsG0480018353.01.T01:intron 40.0%
!! TATGTTTGGGTTGGTGGTAT+TGG - Chr4:3696450-3696469 MsG0480018353.01.T01:intron 40.0%
!! TCAGTTGATTCATTTTCCGG+TGG + Chr4:3695351-3695370 None:intergenic 40.0%
ACAACATTGGGTCCATGGAA+TGG - Chr4:3696135-3696154 MsG0480018353.01.T01:intron 45.0%
CAACCTGAAATGCCTCGAAA+TGG - Chr4:3695148-3695167 MsG0480018353.01.T01:three_prime_UTR 45.0%
CATATAGTATGCATGTCCCG+AGG + Chr4:3697326-3697345 None:intergenic 45.0%
GGGAGGAATAGACCAAACAA+GGG - Chr4:3697874-3697893 MsG0480018353.01.T01:CDS 45.0%
GTGGAAGAGATGAAGAATCG+TGG + Chr4:3695188-3695207 None:intergenic 45.0%
TCCGCTATGCAATAGCGTTA+TGG + Chr4:3695983-3696002 None:intergenic 45.0%
TGGACAACACCATTCTTGTC+AGG - Chr4:3697169-3697188 MsG0480018353.01.T01:intron 45.0%
TGGGAGGAATAGACCAAACA+AGG - Chr4:3697873-3697892 MsG0480018353.01.T01:CDS 45.0%
TTGTCAAATAGCAGCTACCG+AGG + Chr4:3697080-3697099 None:intergenic 45.0%
! GGATTTTGTGTTCTAGCCTC+GGG - Chr4:3697307-3697326 MsG0480018353.01.T01:intron 45.0%
! GTTCCATTTCGAGGCATTTC+AGG + Chr4:3695154-3695173 None:intergenic 45.0%
!! GTTGATTCATTTTCCGGTGG+TGG + Chr4:3695348-3695367 None:intergenic 45.0%
AAGGAGAAGGAGAGAGAGTG+TGG + Chr4:3695207-3695226 None:intergenic 50.0%
CGCTAAGCACAGTTGTGTAG+CGG - Chr4:3696074-3696093 MsG0480018353.01.T01:intron 50.0%
CTCCCCACAATATTCACCCA+AGG - Chr4:3695655-3695674 MsG0480018353.01.T01:intron 50.0%
GAAGTGGAGGAAGAAGAGAG+CGG + Chr4:3695264-3695283 None:intergenic 50.0%
TCAAATAGCAGCTACCGAGG+CGG + Chr4:3697077-3697096 None:intergenic 50.0%
TTTGGGCTTCTGCATGGGAT+GGG - Chr4:3697854-3697873 MsG0480018353.01.T01:CDS 50.0%
! TTTTGGGCTTCTGCATGGGA+TGG - Chr4:3697853-3697872 MsG0480018353.01.T01:CDS 50.0%
!! TTTGGGTTGGTGGTATTGGG+TGG - Chr4:3696454-3696473 MsG0480018353.01.T01:intron 50.0%
!!! TTCATTTTCCGGTGGTGGGT+CGG + Chr4:3695343-3695362 None:intergenic 50.0%
!! TCATGTGGTGGTGGAGGAGT+TGG + Chr4:3695318-3695337 None:intergenic 55.0%
!! TGGTGGAGGAGTTGGTGATG+CGG + Chr4:3695310-3695329 None:intergenic 55.0%
!!! TCATTTTCCGGTGGTGGGTC+GGG + Chr4:3695342-3695361 None:intergenic 55.0%
AAGACGACGGAGGGAAGTGG+AGG + Chr4:3695277-3695296 None:intergenic 60.0%
CTACCGAGGCGGTATAGCAC+TGG + Chr4:3697066-3697085 None:intergenic 60.0%
GCTCCAGTGCTATACCGCCT+CGG - Chr4:3697060-3697079 MsG0480018353.01.T01:intron 60.0%
!!! CATTTTCCGGTGGTGGGTCG+GGG + Chr4:3695341-3695360 None:intergenic 60.0%
ACATGACCCCGACCCACCAC+CGG - Chr4:3695332-3695351 MsG0480018353.01.T01:exon 65.0%
GCGAAGACGACGGAGGGAAG+TGG + Chr4:3695280-3695299 None:intergenic 65.0%
GGGCTTCTGCATGGGATGGG+AGG - Chr4:3697857-3697876 MsG0480018353.01.T01:CDS 65.0%
!! GAGGAGTTGGTGATGCGGCG+CGG + Chr4:3695305-3695324 None:intergenic 65.0%
!! TCGGGGTCATGTGGTGGTGG+AGG + Chr4:3695324-3695343 None:intergenic 65.0%
GCGGCAGCGAAGACGACGGA+GGG + Chr4:3695286-3695305 None:intergenic 70.0%
GGGTCGGGGTCATGTGGTGG+TGG + Chr4:3695327-3695346 None:intergenic 70.0%
GGTGGGTCGGGGTCATGTGG+TGG + Chr4:3695330-3695349 None:intergenic 70.0%
!! GGTGGTGGGTCGGGGTCATG+TGG + Chr4:3695333-3695352 None:intergenic 70.0%
CGCGGCAGCGAAGACGACGG+AGG + Chr4:3695287-3695306 None:intergenic 75.0%
CGGCGCGGCAGCGAAGACGA+CGG + Chr4:3695290-3695309 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 3695134 3698049 3695134 ID=MsG0480018353.01;Name=MsG0480018353.01
Chr4 mRNA 3695134 3698049 3695134 ID=MsG0480018353.01.T01;Parent=MsG0480018353.01;Name=MsG0480018353.01.T01;_AED=0.41;_eAED=0.41;_QI=23|1|1|1|0|0|2|205|96
Chr4 exon 3695134 3695407 3695134 ID=MsG0480018353.01.T01:exon:1481;Parent=MsG0480018353.01.T01
Chr4 exon 3697805 3698049 3697805 ID=MsG0480018353.01.T01:exon:1480;Parent=MsG0480018353.01.T01
Chr4 five_prime_UTR 3698027 3698049 3698027 ID=MsG0480018353.01.T01:five_prime_utr;Parent=MsG0480018353.01.T01
Chr4 CDS 3697805 3698026 3697805 ID=MsG0480018353.01.T01:cds;Parent=MsG0480018353.01.T01
Chr4 CDS 3695339 3695407 3695339 ID=MsG0480018353.01.T01:cds;Parent=MsG0480018353.01.T01
Chr4 three_prime_UTR 3695134 3695338 3695134 ID=MsG0480018353.01.T01:three_prime_utr;Parent=MsG0480018353.01.T01
Chr4 mRNA 3695268 3697982 3695268 ID=MsG0480018353.01.T02;Parent=MsG0480018353.01;Name=MsG0480018353.01.T02;_AED=0.45;_eAED=0.45;_QI=0|0|0|1|0|0|2|0|103
Chr4 exon 3695268 3695413 3695268 ID=MsG0480018353.01.T02:exon:1483;Parent=MsG0480018353.01.T02
Chr4 exon 3697817 3697982 3697817 ID=MsG0480018353.01.T02:exon:1482;Parent=MsG0480018353.01.T02
Chr4 CDS 3697817 3697982 3697817 ID=MsG0480018353.01.T02:cds;Parent=MsG0480018353.01.T02
Chr4 CDS 3695268 3695413 3695268 ID=MsG0480018353.01.T02:cds;Parent=MsG0480018353.01.T02
Gene Sequence

>MsG0480018353.01.T02

CTTCCACACTCTCTCTCCTTCTCCTTCTTCTTCACTTCTCTCTCTAGCCGTTCATTTCAACCGCTCTCTTCTTCCTCCACTTCCCTCCGTCGTCTTCGCTGCCGCGCCGCATCACCAACTCCTCCACCACCACATGACCCCGACCCACCACCGGAAAATGAATCAAGAGCAGGTGTCGCTGCATCCTTATCAAAATTTCAAGATAGAGTACAGATCTTCTTTGCTGTTCTTTTCTGGATGACTCTATTCTTTTGGGCTTCTGCATGGGATGGGAGGAATAGACCAAACAAGGGATCAAAGTTTAGAAAATAA

>MsG0480018353.01.T01

ATGCCTCGAAATGGAACTTGTAAATCTTCCACGATTCTTCATCTCTTCCACACTCTCTCTCCTTCTCCTTCTTCTTCACTTCTCTCTCTAGCCGTTCATTTCAACCGCTCTCTTCTTCCTCCACTTCCCTCCGTCGTCTTCGCTGCCGCGCCGCATCACCAACTCCTCCACCACCACATGACCCCGACCCACCACCGGAAAATGAATCAACTGAACTTCAAGGTGTCGCTGCATCCTTATCAAAATTTCAAGATAGAGTACAGATCTTCTTTGCTGTTCTTTTCTGGATGA
Protein sequence

>MsG0480018353.01.T02

LPHSLSFSFFFTSLSSRSFQPLSSSSTSLRRLRCRAASPTPPPPHDPDPPPENESRAGVAASLSKFQDRVQIFFAVLFWMTLFFWASAWDGRNRPNKGSKFRK*

>MsG0480018353.01.T01

MPRNGTCKSSTILHLFHTLSPSPSSSLLSLAVHFNRSLLPPLPSVVFAAAPHHQLLHHHMTPTHHRKMNQLNFKVSLHPYQNFKIEYRSSLLFFSG*