Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480018356.01.T01 | XP_003604394.1 | 96.098 | 205 | 8 | 0 | 35 | 239 | 1 | 205 | 1.12E-137 | 395 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480018356.01.T01 | O04012 | 54.808 | 208 | 90 | 4 | 35 | 238 | 1 | 208 | 2.53E-65 | 204 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480018356.01.T01 | G7JGZ8 | 96.098 | 205 | 8 | 0 | 35 | 239 | 1 | 205 | 5.33e-138 | 395 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0280010894.01 | MsG0480018356.01 | 0.817921 | 2.566570e-52 | 1.894062e-49 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480018356.01.T01 | MTR_4g010340 | 96.098 | 205 | 8 | 0 | 35 | 239 | 1 | 205 | 1.35e-141 | 395 |
MsG0480018356.01.T01 | MTR_8g020760 | 71.090 | 211 | 57 | 2 | 33 | 239 | 1 | 211 | 1.25e-100 | 291 |
MsG0480018356.01.T01 | MTR_8g020763 | 75.275 | 182 | 43 | 2 | 60 | 239 | 9 | 190 | 1.95e-92 | 270 |
MsG0480018356.01.T01 | MTR_2g019780 | 65.116 | 215 | 64 | 5 | 33 | 239 | 1 | 212 | 1.67e-86 | 256 |
MsG0480018356.01.T01 | MTR_8g020630 | 60.952 | 210 | 78 | 3 | 33 | 239 | 1 | 209 | 5.13e-86 | 254 |
MsG0480018356.01.T01 | MTR_3g073170 | 64.319 | 213 | 67 | 4 | 33 | 239 | 1 | 210 | 4.38e-84 | 249 |
MsG0480018356.01.T01 | MTR_8g020650 | 63.636 | 187 | 67 | 1 | 54 | 239 | 23 | 209 | 1.28e-83 | 248 |
MsG0480018356.01.T01 | MTR_8g020670 | 61.275 | 204 | 76 | 2 | 39 | 239 | 6 | 209 | 1.79e-83 | 248 |
MsG0480018356.01.T01 | MTR_2g044040 | 58.095 | 210 | 84 | 3 | 33 | 239 | 1 | 209 | 1.03e-80 | 241 |
MsG0480018356.01.T01 | MTR_2g045100 | 60.000 | 210 | 80 | 3 | 33 | 239 | 1 | 209 | 1.58e-80 | 240 |
MsG0480018356.01.T01 | MTR_8g020770 | 57.746 | 213 | 83 | 4 | 33 | 239 | 1 | 212 | 1.26e-78 | 236 |
MsG0480018356.01.T01 | MTR_2g036120 | 56.938 | 209 | 86 | 3 | 33 | 238 | 1 | 208 | 5.27e-76 | 229 |
MsG0480018356.01.T01 | MTR_8g020750 | 57.547 | 212 | 85 | 4 | 33 | 239 | 1 | 212 | 5.16e-75 | 226 |
MsG0480018356.01.T01 | MTR_3g019710 | 54.286 | 210 | 94 | 2 | 31 | 239 | 1 | 209 | 1.00e-74 | 226 |
MsG0480018356.01.T01 | MTR_0284s0010 | 55.714 | 210 | 89 | 3 | 33 | 239 | 1 | 209 | 1.77e-74 | 225 |
MsG0480018356.01.T01 | MTR_7g011340 | 58.421 | 190 | 78 | 1 | 51 | 239 | 20 | 209 | 1.75e-73 | 223 |
MsG0480018356.01.T01 | MTR_3g019650 | 52.857 | 210 | 96 | 2 | 31 | 239 | 1 | 208 | 1.27e-71 | 218 |
MsG0480018356.01.T01 | MTR_3g019680 | 52.857 | 210 | 96 | 2 | 31 | 239 | 1 | 208 | 4.41e-71 | 216 |
MsG0480018356.01.T01 | MTR_5g031460 | 52.381 | 210 | 96 | 3 | 33 | 239 | 1 | 209 | 4.58e-69 | 211 |
MsG0480018356.01.T01 | MTR_8g020610 | 52.913 | 206 | 90 | 5 | 39 | 239 | 4 | 207 | 9.21e-66 | 202 |
MsG0480018356.01.T01 | MTR_8g020590 | 50.481 | 208 | 100 | 3 | 35 | 239 | 1 | 208 | 1.62e-63 | 197 |
MsG0480018356.01.T01 | MTR_2g041550 | 48.571 | 210 | 105 | 3 | 33 | 239 | 1 | 210 | 4.74e-61 | 191 |
MsG0480018356.01.T01 | MTR_2g041570 | 47.143 | 210 | 108 | 3 | 33 | 239 | 1 | 210 | 2.74e-59 | 186 |
MsG0480018356.01.T01 | MTR_2g041580 | 47.143 | 210 | 108 | 3 | 33 | 239 | 1 | 210 | 9.14e-59 | 185 |
MsG0480018356.01.T01 | MTR_3g019810 | 50.000 | 204 | 92 | 4 | 32 | 232 | 106 | 302 | 1.26e-55 | 180 |
MsG0480018356.01.T01 | MTR_4g027415 | 57.724 | 123 | 51 | 1 | 51 | 172 | 20 | 142 | 1.44e-40 | 136 |
MsG0480018356.01.T01 | MTR_1g085140 | 40.816 | 196 | 107 | 5 | 47 | 235 | 22 | 215 | 4.07e-34 | 122 |
MsG0480018356.01.T01 | MTR_1g079490 | 35.681 | 213 | 120 | 5 | 40 | 235 | 5 | 217 | 6.35e-32 | 116 |
MsG0480018356.01.T01 | MTR_6g005330 | 37.500 | 216 | 118 | 6 | 36 | 235 | 1 | 215 | 7.32e-32 | 116 |
MsG0480018356.01.T01 | MTR_6g005360 | 40.805 | 174 | 96 | 4 | 68 | 235 | 43 | 215 | 2.44e-31 | 115 |
MsG0480018356.01.T01 | MTR_1g060120 | 32.500 | 200 | 126 | 3 | 46 | 236 | 23 | 222 | 2.96e-31 | 115 |
MsG0480018356.01.T01 | MTR_1g085500 | 36.667 | 210 | 117 | 7 | 38 | 234 | 7 | 213 | 3.49e-31 | 114 |
MsG0480018356.01.T01 | MTR_6g005310 | 40.805 | 174 | 96 | 4 | 68 | 235 | 43 | 215 | 4.72e-31 | 114 |
MsG0480018356.01.T01 | MTR_7g111240 | 39.037 | 187 | 109 | 4 | 54 | 235 | 25 | 211 | 7.30e-31 | 114 |
MsG0480018356.01.T01 | MTR_7g111240 | 39.572 | 187 | 105 | 5 | 54 | 235 | 25 | 208 | 9.94e-31 | 113 |
MsG0480018356.01.T01 | MTR_6g005340 | 40.230 | 174 | 97 | 4 | 68 | 235 | 43 | 215 | 3.00e-30 | 112 |
MsG0480018356.01.T01 | MTR_2g031270 | 37.566 | 189 | 108 | 5 | 54 | 235 | 28 | 213 | 3.95e-30 | 112 |
MsG0480018356.01.T01 | MTR_2g072560 | 52.586 | 116 | 51 | 3 | 33 | 145 | 1 | 115 | 7.91e-30 | 108 |
MsG0480018356.01.T01 | MTR_3g019610 | 54.286 | 105 | 47 | 1 | 31 | 135 | 1 | 104 | 2.62e-29 | 106 |
MsG0480018356.01.T01 | MTR_1g112200 | 33.503 | 197 | 125 | 3 | 41 | 235 | 15 | 207 | 4.10e-29 | 109 |
MsG0480018356.01.T01 | MTR_2g030855 | 39.011 | 182 | 100 | 5 | 54 | 230 | 27 | 202 | 1.92e-28 | 107 |
MsG0480018356.01.T01 | MTR_1g023770 | 38.596 | 171 | 98 | 4 | 72 | 235 | 39 | 209 | 2.43e-28 | 107 |
MsG0480018356.01.T01 | MTR_4g017040 | 35.616 | 219 | 120 | 7 | 33 | 234 | 1 | 215 | 1.77e-26 | 102 |
MsG0480018356.01.T01 | MTR_5g046410 | 35.160 | 219 | 118 | 7 | 36 | 234 | 1 | 215 | 3.29e-26 | 102 |
MsG0480018356.01.T01 | MTR_5g046430 | 35.160 | 219 | 118 | 7 | 36 | 234 | 1 | 215 | 3.29e-26 | 102 |
MsG0480018356.01.T01 | MTR_4g017030 | 35.160 | 219 | 118 | 7 | 36 | 234 | 1 | 215 | 3.29e-26 | 102 |
MsG0480018356.01.T01 | MTR_4g017050 | 35.160 | 219 | 118 | 7 | 36 | 234 | 1 | 215 | 3.29e-26 | 102 |
MsG0480018356.01.T01 | MTR_2g019250 | 35.160 | 219 | 118 | 7 | 36 | 234 | 1 | 215 | 1.02e-25 | 100 |
MsG0480018356.01.T01 | MTR_8g007300 | 35.088 | 171 | 98 | 5 | 39 | 198 | 11 | 179 | 3.01e-25 | 99.4 |
MsG0480018356.01.T01 | MTR_6g005380 | 38.764 | 178 | 93 | 5 | 36 | 198 | 1 | 177 | 9.23e-25 | 97.8 |
MsG0480018356.01.T01 | MTR_3g096330 | 33.684 | 190 | 110 | 5 | 25 | 198 | 541 | 730 | 9.68e-25 | 102 |
MsG0480018356.01.T01 | MTR_2g030895 | 36.628 | 172 | 101 | 5 | 72 | 235 | 7 | 178 | 1.06e-24 | 96.7 |
MsG0480018356.01.T01 | MTR_5g036570 | 33.690 | 187 | 110 | 5 | 55 | 237 | 33 | 209 | 7.58e-24 | 95.5 |
MsG0480018356.01.T01 | MTR_2g030865 | 36.628 | 172 | 101 | 5 | 72 | 235 | 7 | 178 | 4.23e-23 | 92.4 |
MsG0480018356.01.T01 | MTR_6g005350 | 32.558 | 215 | 129 | 6 | 36 | 235 | 1 | 214 | 4.78e-21 | 88.2 |
MsG0480018356.01.T01 | MTR_2g086630 | 34.444 | 180 | 109 | 5 | 64 | 236 | 28 | 205 | 1.52e-20 | 86.7 |
MsG0480018356.01.T01 | MTR_2g086620 | 32.857 | 210 | 122 | 7 | 34 | 236 | 8 | 205 | 4.55e-20 | 85.1 |
MsG0480018356.01.T01 | MTR_2g031300 | 45.283 | 106 | 53 | 3 | 72 | 172 | 7 | 112 | 5.69e-20 | 83.6 |
MsG0480018356.01.T01 | MTR_2g086640 | 30.698 | 215 | 132 | 7 | 28 | 236 | 1 | 204 | 1.09e-19 | 84.3 |
MsG0480018356.01.T01 | MTR_2g096110 | 38.816 | 152 | 68 | 6 | 77 | 224 | 8 | 138 | 9.74e-19 | 80.1 |
MsG0480018356.01.T01 | MTR_4g052770 | 36.585 | 164 | 98 | 4 | 78 | 235 | 42 | 205 | 4.97e-18 | 79.7 |
MsG0480018356.01.T01 | MTR_4g052780 | 36.585 | 164 | 98 | 4 | 78 | 235 | 42 | 205 | 9.51e-18 | 79.0 |
MsG0480018356.01.T01 | MTR_7g029500 | 68.333 | 60 | 15 | 1 | 180 | 239 | 38 | 93 | 7.98e-17 | 73.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480018356.01.T01 | AT1G72610 | 48.558 | 208 | 104 | 3 | 35 | 239 | 1 | 208 | 1.31e-59 | 187 |
MsG0480018356.01.T01 | AT5G20630 | 48.095 | 210 | 105 | 4 | 33 | 238 | 1 | 210 | 1.37e-58 | 185 |
MsG0480018356.01.T01 | AT5G38960 | 39.706 | 204 | 105 | 6 | 46 | 235 | 23 | 222 | 3.00e-35 | 125 |
MsG0480018356.01.T01 | AT3G05950 | 39.171 | 217 | 118 | 6 | 33 | 235 | 5 | 221 | 1.53e-33 | 121 |
MsG0480018356.01.T01 | AT1G09560 | 39.000 | 200 | 117 | 4 | 42 | 236 | 17 | 216 | 3.50e-33 | 120 |
MsG0480018356.01.T01 | AT3G62020 | 38.462 | 208 | 115 | 7 | 41 | 235 | 8 | 215 | 6.53e-33 | 119 |
MsG0480018356.01.T01 | AT3G05930 | 37.981 | 208 | 118 | 5 | 39 | 235 | 8 | 215 | 7.63e-33 | 119 |
MsG0480018356.01.T01 | AT1G02335 | 38.503 | 187 | 110 | 4 | 54 | 235 | 29 | 215 | 2.44e-32 | 117 |
MsG0480018356.01.T01 | AT5G26700 | 38.191 | 199 | 117 | 5 | 40 | 235 | 14 | 209 | 2.54e-32 | 117 |
MsG0480018356.01.T01 | AT5G39190 | 37.143 | 210 | 118 | 6 | 40 | 235 | 10 | 219 | 4.63e-32 | 117 |
MsG0480018356.01.T01 | AT5G39160 | 35.885 | 209 | 118 | 6 | 40 | 235 | 10 | 215 | 6.84e-32 | 116 |
MsG0480018356.01.T01 | AT5G38940 | 38.579 | 197 | 112 | 5 | 48 | 235 | 25 | 221 | 9.59e-32 | 116 |
MsG0480018356.01.T01 | AT5G39160 | 36.667 | 210 | 119 | 6 | 40 | 235 | 10 | 219 | 1.21e-31 | 116 |
MsG0480018356.01.T01 | AT1G18980 | 37.500 | 200 | 118 | 5 | 41 | 235 | 21 | 218 | 1.32e-31 | 115 |
MsG0480018356.01.T01 | AT5G38940 | 38.579 | 197 | 112 | 5 | 48 | 235 | 49 | 245 | 1.66e-31 | 116 |
MsG0480018356.01.T01 | AT3G04200 | 36.744 | 215 | 116 | 7 | 31 | 228 | 4 | 215 | 2.03e-31 | 115 |
MsG0480018356.01.T01 | AT5G38910 | 38.614 | 202 | 107 | 6 | 47 | 235 | 22 | 219 | 7.00e-31 | 114 |
MsG0480018356.01.T01 | AT5G39130 | 35.714 | 210 | 121 | 6 | 40 | 235 | 10 | 219 | 7.70e-31 | 114 |
MsG0480018356.01.T01 | AT3G10080 | 36.310 | 168 | 105 | 2 | 71 | 236 | 53 | 220 | 1.25e-29 | 110 |
MsG0480018356.01.T01 | AT5G39110 | 36.715 | 207 | 116 | 6 | 44 | 235 | 14 | 220 | 1.43e-29 | 110 |
MsG0480018356.01.T01 | AT3G62020 | 38.506 | 174 | 101 | 5 | 68 | 235 | 13 | 186 | 1.74e-29 | 109 |
MsG0480018356.01.T01 | AT3G10080 | 36.310 | 168 | 105 | 2 | 71 | 236 | 124 | 291 | 3.23e-29 | 111 |
MsG0480018356.01.T01 | AT5G38930 | 36.683 | 199 | 117 | 5 | 46 | 235 | 23 | 221 | 4.23e-29 | 109 |
MsG0480018356.01.T01 | AT4G14630 | 37.073 | 205 | 111 | 6 | 45 | 235 | 22 | 222 | 4.90e-29 | 109 |
MsG0480018356.01.T01 | AT5G39120 | 35.000 | 220 | 127 | 7 | 31 | 235 | 1 | 219 | 6.17e-29 | 108 |
MsG0480018356.01.T01 | AT1G18970 | 35.238 | 210 | 127 | 6 | 33 | 235 | 11 | 218 | 2.96e-28 | 107 |
MsG0480018356.01.T01 | AT3G04150 | 35.000 | 180 | 109 | 4 | 68 | 239 | 46 | 225 | 5.01e-28 | 107 |
MsG0480018356.01.T01 | AT3G04150 | 35.000 | 180 | 109 | 4 | 68 | 239 | 59 | 238 | 5.86e-28 | 107 |
MsG0480018356.01.T01 | AT5G39180 | 37.500 | 176 | 102 | 4 | 68 | 235 | 44 | 219 | 7.36e-28 | 106 |
MsG0480018356.01.T01 | AT5G39150 | 37.500 | 176 | 102 | 4 | 68 | 235 | 44 | 219 | 2.08e-27 | 105 |
MsG0480018356.01.T01 | AT5G39190 | 36.364 | 165 | 98 | 3 | 78 | 235 | 33 | 197 | 1.74e-26 | 102 |
MsG0480018356.01.T01 | AT3G04190 | 35.838 | 173 | 103 | 4 | 72 | 236 | 50 | 222 | 4.40e-26 | 101 |
MsG0480018356.01.T01 | AT5G39160 | 35.758 | 165 | 99 | 3 | 78 | 235 | 33 | 197 | 4.97e-26 | 100 |
MsG0480018356.01.T01 | AT5G61750 | 40.299 | 134 | 77 | 3 | 68 | 198 | 40 | 173 | 6.78e-26 | 100 |
MsG0480018356.01.T01 | AT3G04180 | 36.416 | 173 | 102 | 4 | 72 | 236 | 50 | 222 | 1.14e-25 | 100 |
MsG0480018356.01.T01 | AT1G74820 | 44.361 | 133 | 69 | 4 | 54 | 183 | 41 | 171 | 1.37e-24 | 97.8 |
MsG0480018356.01.T01 | AT1G10460 | 39.716 | 141 | 80 | 5 | 68 | 203 | 41 | 181 | 8.97e-24 | 95.5 |
MsG0480018356.01.T01 | AT3G04170 | 33.962 | 212 | 117 | 8 | 42 | 236 | 14 | 219 | 1.80e-23 | 94.7 |
MsG0480018356.01.T01 | AT5G38910 | 31.818 | 198 | 89 | 5 | 47 | 235 | 22 | 182 | 2.11e-16 | 75.1 |
Find 41 sgRNAs with CRISPR-Local
Find 46 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATACTTGATACTCTATTATT+TGG | 0.194314 | 4:-3748428 | MsG0480018356.01.T01:CDS |
TGATCTTTACAAATTGGATA+TGG | 0.196368 | 4:+3748954 | None:intergenic |
TCATTCTGATCTTTACAAAT+TGG | 0.217632 | 4:+3748948 | None:intergenic |
AAAAGGGTTTATTGTGCTTC+CGG | 0.287277 | 4:+3748763 | None:intergenic |
TAAAGTAGTCTCAGCAATTA+TGG | 0.293334 | 4:+3748388 | None:intergenic |
GGTGTTATTGCAAAATTAAA+AGG | 0.297840 | 4:+3748746 | None:intergenic |
ACAAAATGCAATAGTCCTTC+TGG | 0.309946 | 4:+3748518 | None:intergenic |
AGAGCAGATTTCGGTATAAA+TGG | 0.319908 | 4:-3748671 | MsG0480018356.01.T01:CDS |
GGATAGCCTGAAGGGGTGTT+TGG | 0.320221 | 4:+3748842 | None:intergenic |
TTTGTAGTTAACTCTGGTAT+TGG | 0.328442 | 4:-3748500 | MsG0480018356.01.T01:CDS |
TACAAATTGGATATGGGATA+AGG | 0.332999 | 4:+3748961 | None:intergenic |
ATAATGATATTCCAACAATA+TGG | 0.336327 | 4:+3749007 | None:intergenic |
AAAGGGTTTATTGTGCTTCC+GGG | 0.366887 | 4:+3748764 | None:intergenic |
ATATTCCATCACCATATTGT+TGG | 0.376312 | 4:-3749018 | MsG0480018356.01.T01:CDS |
GATCTTTACAAATTGGATAT+GGG | 0.390093 | 4:+3748955 | None:intergenic |
ACAAATTGGATATGGGATAA+GGG | 0.396685 | 4:+3748962 | None:intergenic |
GATAGCCTGAAGGGGTGTTT+GGG | 0.403343 | 4:+3748843 | None:intergenic |
GAATTACTTATCGTTGTTGA+AGG | 0.404833 | 4:-3748617 | MsG0480018356.01.T01:CDS |
CTACTCCCAAACACCCCTTC+AGG | 0.414099 | 4:-3748848 | MsG0480018356.01.T01:CDS |
AAACTGAAGGCTCAGTTTAA+CGG | 0.420980 | 4:-3748344 | MsG0480018356.01.T01:CDS |
ACATAAATCATCAGCATAAG+AGG | 0.443948 | 4:+3748883 | None:intergenic |
ACTAGTTTACCAGGTCTTAA+CGG | 0.448053 | 4:-3748713 | MsG0480018356.01.T01:CDS |
GTATCAAGTATTTGTGTGCT+AGG | 0.456613 | 4:+3748440 | None:intergenic |
TCTGCAGCAAGAGCAGATTT+CGG | 0.459225 | 4:-3748680 | MsG0480018356.01.T01:CDS |
GTGTTCTCTGGCTTTGTACC+CGG | 0.484764 | 4:-3748782 | MsG0480018356.01.T01:CDS |
GTGTTATTGCAAAATTAAAA+GGG | 0.511452 | 4:+3748747 | None:intergenic |
TATCAAGTATTTGTGTGCTA+GGG | 0.524080 | 4:+3748441 | None:intergenic |
TATTCGAAAACTGTTAAACC+TGG | 0.530998 | 4:-3748557 | MsG0480018356.01.T01:CDS |
GTTGAAGGTCAAATTACTGC+CGG | 0.534035 | 4:-3748602 | MsG0480018356.01.T01:CDS |
GACTTGCATGGATAGCCTGA+AGG | 0.536376 | 4:+3748833 | None:intergenic |
GCATTTGTCACTAGTTTACC+AGG | 0.540832 | 4:-3748722 | MsG0480018356.01.T01:CDS |
TTACCAGGTCTTAACGGACT+TGG | 0.542899 | 4:-3748707 | MsG0480018356.01.T01:CDS |
AAGGCTCAGTTTAACGGCAC+TGG | 0.546212 | 4:-3748338 | MsG0480018356.01.T01:CDS |
ACTTGCATGGATAGCCTGAA+GGG | 0.557716 | 4:+3748834 | None:intergenic |
ATATTCCAACAATATGGTGA+TGG | 0.588734 | 4:+3749013 | None:intergenic |
ACATTTGTTTCTGACTTGCA+TGG | 0.591769 | 4:+3748821 | None:intergenic |
GGTAAACTAGTGACAAATGC+AGG | 0.592955 | 4:+3748725 | None:intergenic |
GTTGCATCATGAGTGTGCAC+TGG | 0.602414 | 4:+3748641 | None:intergenic |
GTCACAGATTCTGAAACTGA+AGG | 0.635927 | 4:-3748357 | MsG0480018356.01.T01:CDS |
ATACCAAGTCCGTTAAGACC+TGG | 0.647866 | 4:+3748704 | None:intergenic |
CTTGCATGGATAGCCTGAAG+GGG | 0.690334 | 4:+3748835 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATGATATTCCAACAATA+TGG | + | Chr4:3748361-3748380 | None:intergenic | 20.0% |
!! | ATACTTGATACTCTATTATT+TGG | - | Chr4:3748937-3748956 | MsG0480018356.01.T01:CDS | 20.0% |
!!! | GTGTTATTGCAAAATTAAAA+GGG | + | Chr4:3748621-3748640 | None:intergenic | 20.0% |
! | GATCTTTACAAATTGGATAT+GGG | + | Chr4:3748413-3748432 | None:intergenic | 25.0% |
! | TCATTCTGATCTTTACAAAT+TGG | + | Chr4:3748420-3748439 | None:intergenic | 25.0% |
! | TGATCTTTACAAATTGGATA+TGG | + | Chr4:3748414-3748433 | None:intergenic | 25.0% |
!! | TTTTGTTCGTGTAATAAATC+CGG | + | Chr4:3748785-3748804 | None:intergenic | 25.0% |
!!! | GGTGTTATTGCAAAATTAAA+AGG | + | Chr4:3748622-3748641 | None:intergenic | 25.0% |
ACAAATTGGATATGGGATAA+GGG | + | Chr4:3748406-3748425 | None:intergenic | 30.0% | |
ACATAAATCATCAGCATAAG+AGG | + | Chr4:3748485-3748504 | None:intergenic | 30.0% | |
ATATTCCAACAATATGGTGA+TGG | + | Chr4:3748355-3748374 | None:intergenic | 30.0% | |
ATATTCCATCACCATATTGT+TGG | - | Chr4:3748347-3748366 | MsG0480018356.01.T01:CDS | 30.0% | |
GAATTACTTATCGTTGTTGA+AGG | - | Chr4:3748748-3748767 | MsG0480018356.01.T01:CDS | 30.0% | |
TAAAGTAGTCTCAGCAATTA+TGG | + | Chr4:3748980-3748999 | None:intergenic | 30.0% | |
TACAAATTGGATATGGGATA+AGG | + | Chr4:3748407-3748426 | None:intergenic | 30.0% | |
TATCAAGTATTTGTGTGCTA+GGG | + | Chr4:3748927-3748946 | None:intergenic | 30.0% | |
TATTCGAAAACTGTTAAACC+TGG | - | Chr4:3748808-3748827 | MsG0480018356.01.T01:CDS | 30.0% | |
TTTGTAGTTAACTCTGGTAT+TGG | - | Chr4:3748865-3748884 | MsG0480018356.01.T01:CDS | 30.0% | |
! | GATCTTATAGTTTTTCCAGA+AGG | - | Chr4:3748832-3748851 | MsG0480018356.01.T01:CDS | 30.0% |
! | TTGCATTTTGTAGTTAACTC+TGG | - | Chr4:3748859-3748878 | MsG0480018356.01.T01:CDS | 30.0% |
AAAAGGGTTTATTGTGCTTC+CGG | + | Chr4:3748605-3748624 | None:intergenic | 35.0% | |
AAACTGAAGGCTCAGTTTAA+CGG | - | Chr4:3749021-3749040 | MsG0480018356.01.T01:CDS | 35.0% | |
ACAAAATGCAATAGTCCTTC+TGG | + | Chr4:3748850-3748869 | None:intergenic | 35.0% | |
AGAGCAGATTTCGGTATAAA+TGG | - | Chr4:3748694-3748713 | MsG0480018356.01.T01:CDS | 35.0% | |
GGAAAAACTATAAGATCACC+AGG | + | Chr4:3748829-3748848 | None:intergenic | 35.0% | |
GTATCAAGTATTTGTGTGCT+AGG | + | Chr4:3748928-3748947 | None:intergenic | 35.0% | |
! | ACTAGTTTACCAGGTCTTAA+CGG | - | Chr4:3748652-3748671 | MsG0480018356.01.T01:CDS | 35.0% |
! | GTGAATGATTTTGTGTTCTC+TGG | - | Chr4:3748571-3748590 | MsG0480018356.01.T01:CDS | 35.0% |
!! | ACATTTGTTTCTGACTTGCA+TGG | + | Chr4:3748547-3748566 | None:intergenic | 35.0% |
AAAGGGTTTATTGTGCTTCC+GGG | + | Chr4:3748604-3748623 | None:intergenic | 40.0% | |
GGTAAACTAGTGACAAATGC+AGG | + | Chr4:3748643-3748662 | None:intergenic | 40.0% | |
GTTGAAGGTCAAATTACTGC+CGG | - | Chr4:3748763-3748782 | MsG0480018356.01.T01:CDS | 40.0% | |
! | GCATTTGTCACTAGTTTACC+AGG | - | Chr4:3748643-3748662 | MsG0480018356.01.T01:CDS | 40.0% |
!! | GTCACAGATTCTGAAACTGA+AGG | - | Chr4:3749008-3749027 | MsG0480018356.01.T01:CDS | 40.0% |
ACTTGCATGGATAGCCTGAA+GGG | + | Chr4:3748534-3748553 | None:intergenic | 45.0% | |
ATACCAAGTCCGTTAAGACC+TGG | + | Chr4:3748664-3748683 | None:intergenic | 45.0% | |
TCTGCAGCAAGAGCAGATTT+CGG | - | Chr4:3748685-3748704 | MsG0480018356.01.T01:CDS | 45.0% | |
!! | TTACCAGGTCTTAACGGACT+TGG | - | Chr4:3748658-3748677 | MsG0480018356.01.T01:CDS | 45.0% |
AAGGCTCAGTTTAACGGCAC+TGG | - | Chr4:3749027-3749046 | MsG0480018356.01.T01:CDS | 50.0% | |
CTTGCATGGATAGCCTGAAG+GGG | + | Chr4:3748533-3748552 | None:intergenic | 50.0% | |
GACTTGCATGGATAGCCTGA+AGG | + | Chr4:3748535-3748554 | None:intergenic | 50.0% | |
GTTGCATCATGAGTGTGCAC+TGG | + | Chr4:3748727-3748746 | None:intergenic | 50.0% | |
!! | GATAGCCTGAAGGGGTGTTT+GGG | + | Chr4:3748525-3748544 | None:intergenic | 50.0% |
!! | GTGTTCTCTGGCTTTGTACC+CGG | - | Chr4:3748583-3748602 | MsG0480018356.01.T01:CDS | 50.0% |
CTACTCCCAAACACCCCTTC+AGG | - | Chr4:3748517-3748536 | MsG0480018356.01.T01:CDS | 55.0% | |
!! | GGATAGCCTGAAGGGGTGTT+TGG | + | Chr4:3748526-3748545 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr4 | gene | 3748334 | 3749053 | 3748334 | ID=MsG0480018356.01;Name=MsG0480018356.01 |
Chr4 | mRNA | 3748334 | 3749053 | 3748334 | ID=MsG0480018356.01.T01;Parent=MsG0480018356.01;Name=MsG0480018356.01.T01;_AED=0.34;_eAED=0.34;_QI=0|-1|0|1|-1|1|1|0|239 |
Chr4 | exon | 3748334 | 3749053 | 3748334 | ID=MsG0480018356.01.T01:exon:1077;Parent=MsG0480018356.01.T01 |
Chr4 | CDS | 3748334 | 3749053 | 3748334 | ID=MsG0480018356.01.T01:cds;Parent=MsG0480018356.01.T01 |
Gene Sequence |
Protein sequence |