AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018429.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018429.01.T01 MTR_4g011610 91.431 1062 37 2 1 1008 1 1062 0.0 1989
MsG0480018429.01.T01 MTR_3g464360 91.000 100 9 0 909 1008 12 111 1.25e-55 188
MsG0480018429.01.T01 MTR_2g013640 31.111 405 258 6 559 957 522 911 8.26e-48 185
MsG0480018429.01.T01 MTR_2g079300 31.316 380 233 12 581 957 531 885 3.21e-44 174
MsG0480018429.01.T01 MTR_2g079310 29.288 379 232 10 581 957 561 905 6.62e-37 150
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018429.01.T01 AT1G52780 51.210 1033 408 20 43 1004 52 1059 0.0 991
MsG0480018429.01.T01 AT4G21700 27.366 391 256 8 578 957 556 929 1.31e-38 156

Find 222 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATTATTCTTGCAATTT+TGG 0.024448 4:+4774870 MsG0480018429.01.T01:CDS
ACATTAAGTTTCCAATGATT+TGG 0.235911 4:-4774660 None:intergenic
CATTAAGTTTCCAATGATTT+GGG 0.246581 4:-4774659 None:intergenic
TGTTAATGGGGATTGGATTC+AGG 0.259264 4:+4772120 MsG0480018429.01.T01:CDS
ATGTTATCTTTATACGGATA+TGG 0.259788 4:-4772754 None:intergenic
TTCTCATTCGTTGCCGGATT+GGG 0.262464 4:+4774585 MsG0480018429.01.T01:CDS
GACCCATGTTTGGGCGTTAT+TGG 0.269185 4:+4773612 MsG0480018429.01.T01:CDS
CCATTATGCCATTTGATGAT+AGG 0.272141 4:+4772158 MsG0480018429.01.T01:CDS
CTGAGTCAGGTTCTGACATT+TGG 0.278689 4:+4774925 MsG0480018429.01.T01:CDS
AATGTCTCATCTTCAAGTTT+AGG 0.280996 4:-4773470 None:intergenic
ATGTCTCATCTTCAAGTTTA+GGG 0.282863 4:-4773469 None:intergenic
CCTATCATCAAATGGCATAA+TGG 0.283131 4:-4772158 None:intergenic
ATCACCATGAAACCATTAAT+AGG 0.290262 4:-4772292 None:intergenic
TGCTGCATTGTATCGATTCT+CGG 0.293597 4:-4773064 None:intergenic
AAGAAGTCGATCCCTATTAA+TGG 0.293623 4:+4772280 MsG0480018429.01.T01:CDS
CTCTCCGTTGGACCCATGTT+TGG 0.294322 4:+4773602 MsG0480018429.01.T01:CDS
ATGGACAATGTGTATGATAA+TGG 0.298181 4:+4772340 MsG0480018429.01.T01:CDS
AGAATTTATCAACCCAAGTT+TGG 0.303306 4:+4774807 MsG0480018429.01.T01:CDS
CGTTGCTTTCTGTATATGAT+TGG 0.303722 4:-4774034 None:intergenic
CAGTTTGGTACAACAGATAA+AGG 0.305831 4:-4772850 None:intergenic
CGTTATTGGTATGCTCAAAA+TGG 0.312147 4:+4773626 MsG0480018429.01.T01:CDS
GGTCTATATTCAACAAAGAT+TGG 0.313885 4:+4774891 MsG0480018429.01.T01:CDS
TTTGAAACTGAACTAGTTCC+AGG 0.314766 4:+4775000 MsG0480018429.01.T01:CDS
TCCTCAGAAAAGTATGGATT+TGG 0.324481 4:-4774781 None:intergenic
GTTGGAAAGATGTATCTTAT+TGG 0.326800 4:+4773806 MsG0480018429.01.T01:CDS
CAGCTTTCGATTCCCTTTCA+AGG 0.327207 4:+4772397 MsG0480018429.01.T01:CDS
TCACAGTGTAATCAATGATA+TGG 0.328329 4:-4774321 None:intergenic
TCTGTCATGTTATCTTTATA+CGG 0.329695 4:-4772760 None:intergenic
TTTGATTATGGTGGTGTTGT+TGG 0.336917 4:+4772076 MsG0480018429.01.T01:CDS
CTATCATCAAATGGCATAAT+GGG 0.338103 4:-4772157 None:intergenic
TCTGCAGCATTTGCATGATA+TGG 0.339777 4:-4773674 None:intergenic
GCGTGGTAGTCCGATGAAAT+TGG 0.339940 4:+4772216 MsG0480018429.01.T01:CDS
CTTTATCTGTTGTACCAAAC+TGG 0.343089 4:+4772851 MsG0480018429.01.T01:CDS
TGACGTTCACTTTGACGAAT+AGG 0.344532 4:+4772593 MsG0480018429.01.T01:CDS
TCTGATTTGAGGTTTGATTA+TGG 0.346892 4:+4772064 MsG0480018429.01.T01:CDS
GAGAGGGTGTTGTGTTTGCT+AGG 0.362217 4:+4772451 MsG0480018429.01.T01:CDS
AGAGAATTCTCATTCGTTGC+CGG 0.363213 4:+4774579 MsG0480018429.01.T01:CDS
GATGATTTCTGCAGTAGATT+AGG 0.363294 4:+4772889 MsG0480018429.01.T01:CDS
CTCAGGAAGCTGTATTTCAT+TGG 0.365594 4:+4774703 MsG0480018429.01.T01:CDS
TCTCCGTTGGACCCATGTTT+GGG 0.372502 4:+4773603 MsG0480018429.01.T01:CDS
TCTGAGTCCTCAGAAAAGTA+TGG 0.372548 4:-4774787 None:intergenic
GATCCCTATTAATGGTTTCA+TGG 0.380725 4:+4772288 MsG0480018429.01.T01:CDS
TATCTGCTGCATCTGATTTG+AGG 0.382376 4:+4772053 MsG0480018429.01.T01:CDS
GTGCTAGGTGTTCAATCTCT+TGG 0.386982 4:+4774193 MsG0480018429.01.T01:CDS
TGTATATGATTGGAAAAGTC+TGG 0.387820 4:-4774024 None:intergenic
GCCGGATTGGGCGAAGGAAT+TGG 0.389094 4:+4774597 MsG0480018429.01.T01:CDS
TTGACGAATAGGATGATAAC+TGG 0.391322 4:+4772604 MsG0480018429.01.T01:CDS
CGCTTGCTACCGAAGGGATC+TGG 0.391624 4:+4773112 MsG0480018429.01.T01:CDS
CGATCCTATGCCTCGTGTGC+AGG 0.394872 4:+4773550 MsG0480018429.01.T01:CDS
TTCTTGTTTCCCCAAATCAT+TGG 0.395299 4:+4774649 MsG0480018429.01.T01:CDS
CTCCCATGGATTCGCAGGAT+TGG 0.396520 4:-4772500 None:intergenic
TCGTATGATGTGTCGTCATC+TGG 0.403840 4:+4774274 MsG0480018429.01.T01:CDS
GTCTATATTCAACAAAGATT+GGG 0.403870 4:+4774892 MsG0480018429.01.T01:CDS
CAAAGAAAACAAAGAGCTAT+AGG 0.407973 4:-4771902 None:intergenic
ATTCTCATTCGTTGCCGGAT+TGG 0.408016 4:+4774584 MsG0480018429.01.T01:CDS
CAGAGCTATGATCTTGAGTC+TGG 0.408744 4:+4773866 MsG0480018429.01.T01:CDS
TGCTTTGGATAAAATATGTT+GGG 0.412355 4:-4772725 None:intergenic
AGCACAACAAGAGATATATA+TGG 0.417099 4:-4774175 None:intergenic
AGTCTTAGCGGGAAAGGTTA+TGG 0.422438 4:+4773740 MsG0480018429.01.T01:CDS
TGATAGGAATGATAATTTGC+CGG 0.423421 4:+4772174 MsG0480018429.01.T01:CDS
TCACCATGAAACCATTAATA+GGG 0.423859 4:-4772291 None:intergenic
TGTTCTGAGATTCTTCTGAC+TGG 0.423964 4:-4774536 None:intergenic
CGGATATGGATCACATGCTT+TGG 0.424010 4:-4772740 None:intergenic
GCAGCTGGTCATAGTAATAC+TGG 0.424134 4:+4773000 MsG0480018429.01.T01:CDS
TATCTCTAGTAACTTCTTCA+AGG 0.428854 4:-4772825 None:intergenic
GTACCATTGCATCTCCAGTT+TGG 0.430538 4:-4772865 None:intergenic
TCCAATTCCTTCGCCCAATC+CGG 0.432668 4:-4774598 None:intergenic
AGCTTTCGATTCCCTTTCAA+GGG 0.443359 4:+4772398 MsG0480018429.01.T01:CDS
TGTGTCGTCATCTGGTACTT+TGG 0.443665 4:+4774282 MsG0480018429.01.T01:CDS
TCTATAGAAATTGTGGCAGT+GGG 0.443741 4:-4773953 None:intergenic
TATTAATGGTTTCATGGTGA+TGG 0.445587 4:+4772294 MsG0480018429.01.T01:CDS
GATAGGAATGATAATTTGCC+GGG 0.447716 4:+4772175 MsG0480018429.01.T01:CDS
TCATTGGAATCACTGTAGTA+AGG 0.450441 4:+4774719 MsG0480018429.01.T01:CDS
TGAGTCAGGTTCTGACATTT+GGG 0.456909 4:+4774926 MsG0480018429.01.T01:CDS
GCAGGATTGGTTTCTCGAGT+TGG 0.458113 4:-4772487 None:intergenic
AAACACCGCAGACACCTTAG+TGG 0.458415 4:-4773025 None:intergenic
ACCTTCGCCTTACATATCAT+TGG 0.459323 4:+4774478 MsG0480018429.01.T01:CDS
AGATGTTAAACTTTATATGC+AGG 0.459891 4:+4772960 MsG0480018429.01.T01:CDS
AAGTGAGATCTTCTGAAAGA+AGG 0.467184 4:-4773508 None:intergenic
TTCTATAGAAATTGTGGCAG+TGG 0.467695 4:-4773954 None:intergenic
CCATCTGAATATCAACTCTC+GGG 0.470434 4:-4773574 None:intergenic
AGGAAATGTATAGATTTGAT+AGG 0.473479 4:+4771966 MsG0480018429.01.T01:CDS
GAAAAGTATGGATTTGGAAC+CGG 0.474078 4:-4774775 None:intergenic
TTCGTCAAAGTGAACGTCAA+TGG 0.474218 4:-4772589 None:intergenic
TATATATCTCTTGTTGTGCT+AGG 0.475305 4:+4774178 MsG0480018429.01.T01:CDS
AAACCAATCCTGCGAATCCA+TGG 0.477479 4:+4772497 MsG0480018429.01.T01:CDS
GCAAGAATAATTGCAGTCAC+AGG 0.479032 4:-4774862 None:intergenic
TGGACAATGTGTATGATAAT+GGG 0.483582 4:+4772341 MsG0480018429.01.T01:CDS
GGTGGTGTTGTTGGTATGAA+AGG 0.484254 4:+4772085 MsG0480018429.01.T01:CDS
ATCCACTCCCATGGATTCGC+AGG 0.485065 4:-4772505 None:intergenic
GGGCTATGACAAGCTGAGTC+AGG 0.485375 4:+4774912 MsG0480018429.01.T01:CDS
TCCATCTGAATATCAACTCT+CGG 0.486650 4:-4773575 None:intergenic
CCGAGTTGTCGTCGGAGGAT+AGG 0.488030 4:-4773918 None:intergenic
TATGTAACCAATGATATGTA+AGG 0.489763 4:-4774485 None:intergenic
AGTGAGATCTTCTGAAAGAA+GGG 0.489835 4:-4773507 None:intergenic
ATGCTTTGGATAAAATATGT+TGG 0.494155 4:-4772726 None:intergenic
TTATCATTCCTATCATCAAA+TGG 0.494662 4:-4772166 None:intergenic
ATATGATTACATTCGAGCTC+CGG 0.496273 4:+4774756 MsG0480018429.01.T01:CDS
CGAAGAGAAACGGTGGGGAG+AGG 0.499132 4:+4772434 MsG0480018429.01.T01:CDS
TTCAGTGTAAACCCCTTGAA+AGG 0.505751 4:-4772410 None:intergenic
TGCACACGAGGCATAGGATC+GGG 0.506191 4:-4773548 None:intergenic
CAGATGTTGATCATGCTCAT+AGG 0.506286 4:+4772254 MsG0480018429.01.T01:CDS
TTCTGACATAGGTACATCAC+TGG 0.506920 4:-4772536 None:intergenic
CGAATGTAATCATATATATG+AGG 0.510676 4:-4774748 None:intergenic
TTGACTTTCTATAGAAATTG+TGG 0.511349 4:-4773960 None:intergenic
GGGGCCTGCACACGAGGCAT+AGG 0.512168 4:-4773554 None:intergenic
ATTAATGGTTTCATGGTGAT+GGG 0.514498 4:+4772295 MsG0480018429.01.T01:CDS
TGGAACTAGTTCAGTTTCAA+AGG 0.517458 4:-4774998 None:intergenic
ATTTGATCATCTTCTGACAT+AGG 0.518471 4:-4772547 None:intergenic
TACAATGCAGCAAAGAGATC+CGG 0.519908 4:+4773075 MsG0480018429.01.T01:CDS
TTCGTTGCCGGATTGGGCGA+AGG 0.523327 4:+4774591 MsG0480018429.01.T01:CDS
CTTTCACAAAGAGGCGTCGA+AGG 0.524754 4:+4774067 MsG0480018429.01.T01:CDS
CCTATCCTCCGACGACAACT+CGG 0.526050 4:+4773918 MsG0480018429.01.T01:CDS
ACTCTCGGGGCCTGCACACG+AGG 0.528489 4:-4773560 None:intergenic
GGGGATTGGATTCAGGAGGA+TGG 0.529222 4:+4772127 MsG0480018429.01.T01:CDS
TCAAATCTATACATTTCCTC+AGG 0.529340 4:-4771962 None:intergenic
GCTTCCTGAGTGGTTTGCAA+TGG 0.530424 4:-4774690 None:intergenic
CTTCGACGCCTCTTTGTGAA+AGG 0.532061 4:-4774066 None:intergenic
CTATGATCTTGAGTCTGGAA+TGG 0.532139 4:+4773871 MsG0480018429.01.T01:CDS
AGAAGATTTCCAGATCCCTT+CGG 0.533850 4:-4773121 None:intergenic
AACCTTTCATATCTAAAAGT+AGG 0.534142 4:-4774964 None:intergenic
GGTTCACATATCATCGCAGT+TGG 0.534330 4:+4772675 MsG0480018429.01.T01:CDS
GAACTAGTTCCAGGTATCAA+TGG 0.535117 4:+4775009 MsG0480018429.01.T01:CDS
TTAACACTTACATTGGCAGT+TGG 0.535291 4:+4774103 MsG0480018429.01.T01:CDS
GTTATCTGTGAGCAAGCAGC+TGG 0.535933 4:+4772985 MsG0480018429.01.T01:CDS
TCAAGGATTTCACAAAACCT+TGG 0.536209 4:-4772808 None:intergenic
GAGGCGTCGAAGGGATTCTC+CGG 0.537519 4:+4774077 MsG0480018429.01.T01:CDS
GAAGAGAAACGGTGGGGAGA+GGG 0.542951 4:+4772435 MsG0480018429.01.T01:CDS
CTGCACAACTGAGTCTTAGC+GGG 0.543307 4:+4773729 MsG0480018429.01.T01:CDS
AGAAGATGATCAAATTCTGT+TGG 0.543445 4:+4772555 MsG0480018429.01.T01:CDS
ATACCAATAACGCCCAAACA+TGG 0.543940 4:-4773615 None:intergenic
TGACGACACATCATACGATT+CGG 0.544582 4:-4774269 None:intergenic
TACACTGAATCGAAGAGAAA+CGG 0.545248 4:+4772424 MsG0480018429.01.T01:CDS
CCAATGTAAGTGTTAAGATC+CGG 0.545290 4:-4774096 None:intergenic
CTAAAAGACACCAATTTCAT+CGG 0.545620 4:-4772226 None:intergenic
CAACTGAGTCTTAGCGGGAA+AGG 0.545727 4:+4773734 MsG0480018429.01.T01:CDS
GGTCTTTATGATCCACATGT+TGG 0.547923 4:+4773788 MsG0480018429.01.T01:CDS
AGAGGGTGTTGTGTTTGCTA+GGG 0.548506 4:+4772452 MsG0480018429.01.T01:CDS
TAATGGGGATTGGATTCAGG+AGG 0.548631 4:+4772123 MsG0480018429.01.T01:CDS
ATCCTGCGAATCCATGGGAG+TGG 0.550077 4:+4772503 MsG0480018429.01.T01:CDS
TTCTAGTGGACAGCTTTGCA+TGG 0.553041 4:+4773140 MsG0480018429.01.T01:CDS
TCACCACCACCATTGATACC+TGG 0.554146 4:-4775018 None:intergenic
TCAGTGTAAACCCCTTGAAA+GGG 0.558492 4:-4772409 None:intergenic
CTGCACACGAGGCATAGGAT+CGG 0.559547 4:-4773549 None:intergenic
TAGTAATACTGGTTCCACTA+AGG 0.561520 4:+4773011 MsG0480018429.01.T01:CDS
TTCAGAAAGTGTGGAAGTCG+CGG 0.562895 4:+4774386 MsG0480018429.01.T01:CDS
ATGAAGTAAAGAAACAATGT+GGG 0.563422 4:+4772023 MsG0480018429.01.T01:CDS
GATGAAGTAAAGAAACAATG+TGG 0.563950 4:+4772022 MsG0480018429.01.T01:CDS
AACATGTCGCTTGCTACCGA+AGG 0.566843 4:+4773105 MsG0480018429.01.T01:CDS
ATCGAAAGCTGAGAATGTCC+AGG 0.567028 4:-4772385 None:intergenic
GATTTGAGGTTTGATTATGG+TGG 0.567973 4:+4772067 MsG0480018429.01.T01:CDS
ATGTCATTAGTGTCTACAAA+GGG 0.571463 4:+4772785 MsG0480018429.01.T01:CDS
AGTATTTAGAATTCGAATCA+CGG 0.572603 4:-4772645 None:intergenic
TAGCAACGATTTCTTAATGA+CGG 0.574040 4:-4773441 None:intergenic
AAATAATTCCAGAGTTCTGT+AGG 0.576696 4:-4773332 None:intergenic
CCGGATCTTAACACTTACAT+TGG 0.577654 4:+4774096 MsG0480018429.01.T01:CDS
GGACCGACGATGATACTCTT+CGG 0.579727 4:+4773984 MsG0480018429.01.T01:CDS
GTTCACATATCATCGCAGTT+GGG 0.580342 4:+4772676 MsG0480018429.01.T01:CDS
AGATACATCTTTCCAACATG+TGG 0.583538 4:-4773800 None:intergenic
ACCAATGATATGTAAGGCGA+AGG 0.583751 4:-4774479 None:intergenic
GAATTCTAAATACTTTGATG+TGG 0.584233 4:+4772654 MsG0480018429.01.T01:CDS
AAATCCATTGCAAACCACTC+AGG 0.587604 4:+4774686 MsG0480018429.01.T01:CDS
ATTAAGTTTCCAATGATTTG+GGG 0.587727 4:-4774658 None:intergenic
TGGAATGGACTGTTTAATTG+AGG 0.588014 4:+4773886 MsG0480018429.01.T01:CDS
GACACAATGCGGCTCAGAAG+AGG 0.589472 4:-4774428 None:intergenic
TCTGCACAACTGAGTCTTAG+CGG 0.591180 4:+4773728 MsG0480018429.01.T01:CDS
CAAGAATAATTGCAGTCACA+GGG 0.591579 4:-4774861 None:intergenic
TTGGGAGTCAAATGTGAACT+TGG 0.593665 4:-4772707 None:intergenic
AAGGAATTGGAAGAATATGC+AGG 0.599727 4:+4774610 MsG0480018429.01.T01:CDS
AACCAATCCTGCGAATCCAT+GGG 0.599738 4:+4772498 MsG0480018429.01.T01:CDS
TTGTGTTACCTACAGAACTC+TGG 0.602229 4:+4773324 MsG0480018429.01.T01:CDS
GTTCCAGGTATCAATGGTGG+TGG 0.602321 4:+4775015 MsG0480018429.01.T01:CDS
GTGATGGGAATTACTAGAGA+TGG 0.602736 4:+4772310 MsG0480018429.01.T01:CDS
AGCTAGTTCACAGTTTCCTG+AGG 0.605725 4:+4771946 MsG0480018429.01.T01:CDS
AATAATTGCAGTCACAGGGA+TGG 0.608164 4:-4774857 None:intergenic
ACGCCCAAACATGGGTCCAA+CGG 0.608166 4:-4773606 None:intergenic
TTAGTGTCTACAAAGGGCCA+AGG 0.608427 4:+4772791 MsG0480018429.01.T01:CDS
AGCCACCGAGTTGTCGTCGG+AGG 0.608910 4:-4773923 None:intergenic
CAGATGGAGATACTCTCCGT+TGG 0.609299 4:+4773590 MsG0480018429.01.T01:CDS
TTTCACAAAGAGGCGTCGAA+GGG 0.611149 4:+4774068 MsG0480018429.01.T01:CDS
TACCAATAACGCCCAAACAT+GGG 0.611853 4:-4773614 None:intergenic
GGGATCTGGAAATCTTCTAG+TGG 0.613176 4:+4773126 MsG0480018429.01.T01:CDS
ATTTGATAGGAAATCTCATG+TGG 0.615496 4:+4771979 MsG0480018429.01.T01:CDS
AATGTCATTAGTGTCTACAA+AGG 0.615661 4:+4772784 MsG0480018429.01.T01:CDS
CCCGAGAGTTGATATTCAGA+TGG 0.617966 4:+4773574 MsG0480018429.01.T01:CDS
GGTGTCTGCGGTGTTTAGAG+CGG 0.617999 4:+4773032 MsG0480018429.01.T01:CDS
GCTTTCGATTCCCTTTCAAG+GGG 0.625094 4:+4772399 MsG0480018429.01.T01:CDS
CAATTTCTATAGAAAGTCAA+AGG 0.629956 4:+4773963 MsG0480018429.01.T01:CDS
GCATTGTATCGATTCTCGGA+TGG 0.634359 4:-4773060 None:intergenic
TGGTTCCACTAAGGTGTCTG+CGG 0.636979 4:+4773020 MsG0480018429.01.T01:CDS
CTGAATCGAAGAGAAACGGT+GGG 0.638224 4:+4772428 MsG0480018429.01.T01:CDS
AATGGACTGTTTAATTGAGG+TGG 0.638598 4:+4773889 MsG0480018429.01.T01:CDS
GCTTCTGCATCTGTGACTAG+AGG 0.640746 4:-4774226 None:intergenic
AAGCGACATGTTGTTGACAC+CGG 0.646984 4:-4773094 None:intergenic
TAGGAATGATAATTTGCCGG+GGG 0.649947 4:+4772177 MsG0480018429.01.T01:CDS
ATGAAATACAGCTTCCTGAG+TGG 0.650636 4:-4774700 None:intergenic
ACATGTCGCTTGCTACCGAA+GGG 0.654577 4:+4773106 MsG0480018429.01.T01:CDS
AAATCATTGGAAACTTAATG+TGG 0.654710 4:+4774662 MsG0480018429.01.T01:CDS
GAGAGAATCAAATCGACACA+TGG 0.655302 4:+4772928 MsG0480018429.01.T01:CDS
GAGGATGTCCTTTCACAAAG+AGG 0.659913 4:+4774058 MsG0480018429.01.T01:CDS
TGCTCAAAATGGTTCAACTG+AGG 0.660852 4:+4773637 MsG0480018429.01.T01:CDS
CTAGTTCCAGGTATCAATGG+TGG 0.661988 4:+4775012 MsG0480018429.01.T01:CDS
ACTAGCCACCGAGTTGTCGT+CGG 0.664018 4:-4773926 None:intergenic
CTATAGAAATTGTGGCAGTG+GGG 0.672403 4:-4773952 None:intergenic
ATAGGAATGATAATTTGCCG+GGG 0.674880 4:+4772176 MsG0480018429.01.T01:CDS
TATCGTTGCTGCTAACCCTG+CGG 0.675722 4:+4774359 MsG0480018429.01.T01:CDS
GTACCAAACTGGAGATGCAA+TGG 0.678491 4:+4772862 MsG0480018429.01.T01:CDS
AGAATCAAATCGACACATGG+AGG 0.680478 4:+4772931 MsG0480018429.01.T01:CDS
TCTGACATAGGTACATCACT+GGG 0.684304 4:-4772535 None:intergenic
ACTGAATCGAAGAGAAACGG+TGG 0.685220 4:+4772427 MsG0480018429.01.T01:CDS
TTTGATAGGAAATCTCATGT+GGG 0.686561 4:+4771980 MsG0480018429.01.T01:CDS
GTACTTTGGAGAACAGTGAG+TGG 0.694108 4:+4774296 MsG0480018429.01.T01:CDS
TTATCAGTGGGGACACAATG+CGG 0.694308 4:-4774439 None:intergenic
CATATACAGAAAGCAACGTG+AGG 0.695447 4:+4774039 MsG0480018429.01.T01:CDS
CATCTGAATATCAACTCTCG+GGG 0.698389 4:-4773573 None:intergenic
ATCCTCCGACGACAACTCGG+TGG 0.702400 4:+4773921 MsG0480018429.01.T01:CDS
GAACCGAAGAGTATCATCGT+CGG 0.709476 4:-4773987 None:intergenic
TGAATCGAAGAGAAACGGTG+GGG 0.716303 4:+4772429 MsG0480018429.01.T01:CDS
AGGAATGATAATTTGCCGGG+GGG 0.723634 4:+4772178 MsG0480018429.01.T01:CDS
GCAGAGACGTGCGAGCATCG+TGG 0.727992 4:+4773831 MsG0480018429.01.T01:CDS
AATTTCATCGGACTACCACG+CGG 0.734370 4:-4772214 None:intergenic
GGTTTGTCAGGAGATCCGCG+TGG 0.824979 4:+4772199 MsG0480018429.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTCAAAAATTAATATTGC+TGG + Chr4:4773380-4773399 MsG0480018429.01.T01:CDS 20.0%
!!! AAAACAACATAGCATTATTT+TGG + Chr4:4773245-4773264 MsG0480018429.01.T01:intron 20.0%
!!! AAACAACATAGCATTATTTT+GGG + Chr4:4773246-4773265 MsG0480018429.01.T01:intron 20.0%
!!! AATAATGCTATGTTGTTTTA+TGG - Chr4:4773244-4773263 None:intergenic 20.0%
!!! ATTTTTGAGTAACTGTAATT+CGG - Chr4:4773371-4773390 None:intergenic 20.0%
! AAATCATTGGAAACTTAATG+TGG + Chr4:4774662-4774681 MsG0480018429.01.T01:CDS 25.0%
! AACCTTTCATATCTAAAAGT+AGG - Chr4:4774967-4774986 None:intergenic 25.0%
! ACATTAAGTTTCCAATGATT+TGG - Chr4:4774663-4774682 None:intergenic 25.0%
! AGATGTTAAACTTTATATGC+AGG + Chr4:4772960-4772979 MsG0480018429.01.T01:CDS 25.0%
! AGGAAATGTATAGATTTGAT+AGG + Chr4:4771966-4771985 MsG0480018429.01.T01:CDS 25.0%
! ATGAAGTAAAGAAACAATGT+GGG + Chr4:4772023-4772042 MsG0480018429.01.T01:CDS 25.0%
! ATGTTATCTTTATACGGATA+TGG - Chr4:4772757-4772776 None:intergenic 25.0%
! ATTAAGTTTCCAATGATTTG+GGG - Chr4:4774661-4774680 None:intergenic 25.0%
! CAATTTCTATAGAAAGTCAA+AGG + Chr4:4773963-4773982 MsG0480018429.01.T01:CDS 25.0%
! CATTAAGTTTCCAATGATTT+GGG - Chr4:4774662-4774681 None:intergenic 25.0%
! CGAATGTAATCATATATATG+AGG - Chr4:4774751-4774770 None:intergenic 25.0%
! GAATTCTAAATACTTTGATG+TGG + Chr4:4772654-4772673 MsG0480018429.01.T01:CDS 25.0%
! GTCTATATTCAACAAAGATT+GGG + Chr4:4774892-4774911 MsG0480018429.01.T01:CDS 25.0%
! TATGTAACCAATGATATGTA+AGG - Chr4:4774488-4774507 None:intergenic 25.0%
! TCTGTCATGTTATCTTTATA+CGG - Chr4:4772763-4772782 None:intergenic 25.0%
! TGTGCTTTATGTAAAAAAGT+TGG - Chr4:4774141-4774160 None:intergenic 25.0%
! TTATCATTCCTATCATCAAA+TGG - Chr4:4772169-4772188 None:intergenic 25.0%
! TTCAAATGATAGAGGAAAAA+AGG - Chr4:4773300-4773319 None:intergenic 25.0%
! TTGACTTTCTATAGAAATTG+TGG - Chr4:4773963-4773982 None:intergenic 25.0%
!! AGTATTTAGAATTCGAATCA+CGG - Chr4:4772648-4772667 None:intergenic 25.0%
!! ATGCTTTGGATAAAATATGT+TGG - Chr4:4772729-4772748 None:intergenic 25.0%
!! TACTAGAGATGGTAATTTTA+TGG + Chr4:4772321-4772340 MsG0480018429.01.T01:CDS 25.0%
!! TACTTTTAGATATGAAAGGT+TGG + Chr4:4774966-4774985 MsG0480018429.01.T01:CDS 25.0%
!! TGCAATTATTCTTGCAATTT+TGG + Chr4:4774870-4774889 MsG0480018429.01.T01:CDS 25.0%
!! TGCTTTGGATAAAATATGTT+GGG - Chr4:4772728-4772747 None:intergenic 25.0%
!! TTGGATTTTTACTCGAAATT+TGG + Chr4:4774826-4774845 MsG0480018429.01.T01:CDS 25.0%
!! TTGTTTTCTTTGTCAATTGT+TGG + Chr4:4771913-4771932 MsG0480018429.01.T01:CDS 25.0%
!! TTTTTACATAAAGCACAATG+TGG + Chr4:4774144-4774163 MsG0480018429.01.T01:CDS 25.0%
!!! AAAGGCACTATTGTTATTAA+TGG - Chr4:4773282-4773301 None:intergenic 25.0%
!!! AAGAAGTACTTTTTTATCAG+TGG - Chr4:4774455-4774474 None:intergenic 25.0%
!!! AGAAGTACTTTTTTATCAGT+GGG - Chr4:4774454-4774473 None:intergenic 25.0%
!!! ATAATGGGAATCTTGATTTT+CGG + Chr4:4772356-4772375 MsG0480018429.01.T01:CDS 25.0%
!!! TTCCTACTTTTAGATATGAA+AGG + Chr4:4774962-4774981 MsG0480018429.01.T01:CDS 25.0%
AAATAATTCCAGAGTTCTGT+AGG - Chr4:4773335-4773354 None:intergenic 30.0%
AATGTCATTAGTGTCTACAA+AGG + Chr4:4772784-4772803 MsG0480018429.01.T01:CDS 30.0%
AGAAGATGATCAAATTCTGT+TGG + Chr4:4772555-4772574 MsG0480018429.01.T01:CDS 30.0%
AGAATTTATCAACCCAAGTT+TGG + Chr4:4774807-4774826 MsG0480018429.01.T01:CDS 30.0%
AGCACAACAAGAGATATATA+TGG - Chr4:4774178-4774197 None:intergenic 30.0%
ATCACCATGAAACCATTAAT+AGG - Chr4:4772295-4772314 None:intergenic 30.0%
ATGGACAATGTGTATGATAA+TGG + Chr4:4772340-4772359 MsG0480018429.01.T01:CDS 30.0%
ATGTCATTAGTGTCTACAAA+GGG + Chr4:4772785-4772804 MsG0480018429.01.T01:CDS 30.0%
ATTAATGGTTTCATGGTGAT+GGG + Chr4:4772295-4772314 MsG0480018429.01.T01:CDS 30.0%
ATTTGATAGGAAATCTCATG+TGG + Chr4:4771979-4771998 MsG0480018429.01.T01:CDS 30.0%
ATTTGATCATCTTCTGACAT+AGG - Chr4:4772550-4772569 None:intergenic 30.0%
CAAAGAAAACAAAGAGCTAT+AGG - Chr4:4771905-4771924 None:intergenic 30.0%
CTAAAAGACACCAATTTCAT+CGG - Chr4:4772229-4772248 None:intergenic 30.0%
CTATCATCAAATGGCATAAT+GGG - Chr4:4772160-4772179 None:intergenic 30.0%
GATGAAGTAAAGAAACAATG+TGG + Chr4:4772022-4772041 MsG0480018429.01.T01:CDS 30.0%
GGTCTATATTCAACAAAGAT+TGG + Chr4:4774891-4774910 MsG0480018429.01.T01:CDS 30.0%
GTTGGAAAGATGTATCTTAT+TGG + Chr4:4773806-4773825 MsG0480018429.01.T01:CDS 30.0%
TAGCAACGATTTCTTAATGA+CGG - Chr4:4773444-4773463 None:intergenic 30.0%
TATCTCTAGTAACTTCTTCA+AGG - Chr4:4772828-4772847 None:intergenic 30.0%
TATTAATGGTTTCATGGTGA+TGG + Chr4:4772294-4772313 MsG0480018429.01.T01:CDS 30.0%
TCAAATCTATACATTTCCTC+AGG - Chr4:4771965-4771984 None:intergenic 30.0%
TCACAGTGTAATCAATGATA+TGG - Chr4:4774324-4774343 None:intergenic 30.0%
TCACCATGAAACCATTAATA+GGG - Chr4:4772294-4772313 None:intergenic 30.0%
TCGAGTAAAAATCCAAACTT+GGG - Chr4:4774822-4774841 None:intergenic 30.0%
TGGACAATGTGTATGATAAT+GGG + Chr4:4772341-4772360 MsG0480018429.01.T01:CDS 30.0%
TGTATATGATTGGAAAAGTC+TGG - Chr4:4774027-4774046 None:intergenic 30.0%
TTCGAGTAAAAATCCAAACT+TGG - Chr4:4774823-4774842 None:intergenic 30.0%
TTTGATAGGAAATCTCATGT+GGG + Chr4:4771980-4771999 MsG0480018429.01.T01:CDS 30.0%
! AATGTCTCATCTTCAAGTTT+AGG - Chr4:4773473-4773492 None:intergenic 30.0%
! ATGTCTCATCTTCAAGTTTA+GGG - Chr4:4773472-4773491 None:intergenic 30.0%
! GTGAGCTTTCTTTTGTTAAT+GGG + Chr4:4772107-4772126 MsG0480018429.01.T01:CDS 30.0%
! TATATATCTCTTGTTGTGCT+AGG + Chr4:4774178-4774197 MsG0480018429.01.T01:CDS 30.0%
! TCTGATTTGAGGTTTGATTA+TGG + Chr4:4772064-4772083 MsG0480018429.01.T01:CDS 30.0%
! TGAGCTTTCTTTTGTTAATG+GGG + Chr4:4772108-4772127 MsG0480018429.01.T01:CDS 30.0%
! TGATAGGAATGATAATTTGC+CGG + Chr4:4772174-4772193 MsG0480018429.01.T01:CDS 30.0%
! TTTCTTTTGTTAATGGGGAT+TGG + Chr4:4772113-4772132 MsG0480018429.01.T01:CDS 30.0%
!! GATGAAATTGGTGTCTTTTA+GGG + Chr4:4772228-4772247 MsG0480018429.01.T01:CDS 30.0%
!!! ATGTTGTTTTATGGAGAAAG+TGG - Chr4:4773235-4773254 None:intergenic 30.0%
!!! GAAGTACTTTTTTATCAGTG+GGG - Chr4:4774453-4774472 None:intergenic 30.0%
!!! TAGATTAGGTCCTTTTTTGT+CGG + Chr4:4772903-4772922 MsG0480018429.01.T01:CDS 30.0%
AAGAAGTCGATCCCTATTAA+TGG + Chr4:4772280-4772299 MsG0480018429.01.T01:CDS 35.0%
AAGGAATTGGAAGAATATGC+AGG + Chr4:4774610-4774629 MsG0480018429.01.T01:CDS 35.0%
AAGGGAGTAACTGTAATACT+CGG + Chr4:4773190-4773209 MsG0480018429.01.T01:intron 35.0%
ACAAGCTGTTCAAATGATAG+AGG - Chr4:4773308-4773327 None:intergenic 35.0%
AGATACATCTTTCCAACATG+TGG - Chr4:4773803-4773822 None:intergenic 35.0%
AGTATTACAGTTACTCCCTT+TGG - Chr4:4773190-4773209 None:intergenic 35.0%
ATATGATTACATTCGAGCTC+CGG + Chr4:4774756-4774775 MsG0480018429.01.T01:CDS 35.0%
ATGACGGTTGAAAAAGTGAA+CGG - Chr4:4773428-4773447 None:intergenic 35.0%
ATTCTCTCATCCGACAAAAA+AGG - Chr4:4772916-4772935 None:intergenic 35.0%
CAAGAATAATTGCAGTCACA+GGG - Chr4:4774864-4774883 None:intergenic 35.0%
CAGTTTGGTACAACAGATAA+AGG - Chr4:4772853-4772872 None:intergenic 35.0%
CCAATGTAAGTGTTAAGATC+CGG - Chr4:4774099-4774118 None:intergenic 35.0%
CCTATCATCAAATGGCATAA+TGG - Chr4:4772161-4772180 None:intergenic 35.0%
CGTTATTGGTATGCTCAAAA+TGG + Chr4:4773626-4773645 MsG0480018429.01.T01:CDS 35.0%
CTTTATCTGTTGTACCAAAC+TGG + Chr4:4772851-4772870 MsG0480018429.01.T01:CDS 35.0%
GATCCCTATTAATGGTTTCA+TGG + Chr4:4772288-4772307 MsG0480018429.01.T01:CDS 35.0%
GATGATTTCTGCAGTAGATT+AGG + Chr4:4772889-4772908 MsG0480018429.01.T01:CDS 35.0%
TACACTGAATCGAAGAGAAA+CGG + Chr4:4772424-4772443 MsG0480018429.01.T01:CDS 35.0%
TCAAGGATTTCACAAAACCT+TGG - Chr4:4772811-4772830 None:intergenic 35.0%
TCATTGGAATCACTGTAGTA+AGG + Chr4:4774719-4774738 MsG0480018429.01.T01:CDS 35.0%
TCCATCTGAATATCAACTCT+CGG - Chr4:4773578-4773597 None:intergenic 35.0%
TCTATAGAAATTGTGGCAGT+GGG - Chr4:4773956-4773975 None:intergenic 35.0%
TGGAACTAGTTCAGTTTCAA+AGG - Chr4:4775001-4775020 None:intergenic 35.0%
TTAACACTTACATTGGCAGT+TGG + Chr4:4774103-4774122 MsG0480018429.01.T01:CDS 35.0%
TTCTATAGAAATTGTGGCAG+TGG - Chr4:4773957-4773976 None:intergenic 35.0%
TTGACGAATAGGATGATAAC+TGG + Chr4:4772604-4772623 MsG0480018429.01.T01:CDS 35.0%
! AAGTGAGATCTTCTGAAAGA+AGG - Chr4:4773511-4773530 None:intergenic 35.0%
! AGTGAGATCTTCTGAAAGAA+GGG - Chr4:4773510-4773529 None:intergenic 35.0%
! ATAGGAATGATAATTTGCCG+GGG + Chr4:4772176-4772195 MsG0480018429.01.T01:CDS 35.0%
! CCATTATGCCATTTGATGAT+AGG + Chr4:4772158-4772177 MsG0480018429.01.T01:CDS 35.0%
! CGTTGCTTTCTGTATATGAT+TGG - Chr4:4774037-4774056 None:intergenic 35.0%
! GAAAAGTATGGATTTGGAAC+CGG - Chr4:4774778-4774797 None:intergenic 35.0%
! GATAGGAATGATAATTTGCC+GGG + Chr4:4772175-4772194 MsG0480018429.01.T01:CDS 35.0%
! GATTTGAGGTTTGATTATGG+TGG + Chr4:4772067-4772086 MsG0480018429.01.T01:CDS 35.0%
! GGAATCTTGATTTTCGGTTA+TGG + Chr4:4772362-4772381 MsG0480018429.01.T01:CDS 35.0%
! GGTGAGCTTTCTTTTGTTAA+TGG + Chr4:4772106-4772125 MsG0480018429.01.T01:CDS 35.0%
! TCCAAATCCATACTTTTCTG+AGG + Chr4:4774780-4774799 MsG0480018429.01.T01:CDS 35.0%
! TCCTCAGAAAAGTATGGATT+TGG - Chr4:4774784-4774803 None:intergenic 35.0%
! TGTTTTATGGAGAAAGTGGT+AGG - Chr4:4773231-4773250 None:intergenic 35.0%
! TTCTTGTTTCCCCAAATCAT+TGG + Chr4:4774649-4774668 MsG0480018429.01.T01:CDS 35.0%
! TTTGAAACTGAACTAGTTCC+AGG + Chr4:4775000-4775019 MsG0480018429.01.T01:CDS 35.0%
!! AATGGACTGTTTAATTGAGG+TGG + Chr4:4773889-4773908 MsG0480018429.01.T01:CDS 35.0%
!! AGAAGCTCTTTTCAAGAGAA+TGG + Chr4:4774243-4774262 MsG0480018429.01.T01:CDS 35.0%
!! CGATGAAATTGGTGTCTTTT+AGG + Chr4:4772227-4772246 MsG0480018429.01.T01:CDS 35.0%
!! TAGTAATACTGGTTCCACTA+AGG + Chr4:4773011-4773030 MsG0480018429.01.T01:CDS 35.0%
!! TGGAATGGACTGTTTAATTG+AGG + Chr4:4773886-4773905 MsG0480018429.01.T01:CDS 35.0%
!! TTTGATTATGGTGGTGTTGT+TGG + Chr4:4772076-4772095 MsG0480018429.01.T01:CDS 35.0%
!!! ATTCTTCTGACTGGTTTTTG+TGG - Chr4:4774530-4774549 None:intergenic 35.0%
AAATCCATTGCAAACCACTC+AGG + Chr4:4774686-4774705 MsG0480018429.01.T01:CDS 40.0%
AATAATTGCAGTCACAGGGA+TGG - Chr4:4774860-4774879 None:intergenic 40.0%
ACCAATGATATGTAAGGCGA+AGG - Chr4:4774482-4774501 None:intergenic 40.0%
ACCTTCGCCTTACATATCAT+TGG + Chr4:4774478-4774497 MsG0480018429.01.T01:CDS 40.0%
AGAAGATTTCCAGATCCCTT+CGG - Chr4:4773124-4773143 None:intergenic 40.0%
AGAATCAAATCGACACATGG+AGG + Chr4:4772931-4772950 MsG0480018429.01.T01:CDS 40.0%
AGAGAATTCTCATTCGTTGC+CGG + Chr4:4774579-4774598 MsG0480018429.01.T01:CDS 40.0%
AGCTTTCGATTCCCTTTCAA+GGG + Chr4:4772398-4772417 MsG0480018429.01.T01:CDS 40.0%
ATACCAATAACGCCCAAACA+TGG - Chr4:4773618-4773637 None:intergenic 40.0%
ATGAAATACAGCTTCCTGAG+TGG - Chr4:4774703-4774722 None:intergenic 40.0%
CAGATGTTGATCATGCTCAT+AGG + Chr4:4772254-4772273 MsG0480018429.01.T01:CDS 40.0%
CATATACAGAAAGCAACGTG+AGG + Chr4:4774039-4774058 MsG0480018429.01.T01:CDS 40.0%
CATCTGAATATCAACTCTCG+GGG - Chr4:4773576-4773595 None:intergenic 40.0%
CCATCTGAATATCAACTCTC+GGG - Chr4:4773577-4773596 None:intergenic 40.0%
CCGGATCTTAACACTTACAT+TGG + Chr4:4774096-4774115 MsG0480018429.01.T01:CDS 40.0%
CTATAGAAATTGTGGCAGTG+GGG - Chr4:4773955-4773974 None:intergenic 40.0%
CTATGATCTTGAGTCTGGAA+TGG + Chr4:4773871-4773890 MsG0480018429.01.T01:CDS 40.0%
CTCAGGAAGCTGTATTTCAT+TGG + Chr4:4774703-4774722 MsG0480018429.01.T01:CDS 40.0%
GAACTAGTTCCAGGTATCAA+TGG + Chr4:4775009-4775028 MsG0480018429.01.T01:CDS 40.0%
GAGAGAATCAAATCGACACA+TGG + Chr4:4772928-4772947 MsG0480018429.01.T01:CDS 40.0%
GCAAGAATAATTGCAGTCAC+AGG - Chr4:4774865-4774884 None:intergenic 40.0%
GGGGAAACAAGAAAAAGTCT+TGG - Chr4:4774642-4774661 None:intergenic 40.0%
GGTCTTTATGATCCACATGT+TGG + Chr4:4773788-4773807 MsG0480018429.01.T01:CDS 40.0%
GTTCACATATCATCGCAGTT+GGG + Chr4:4772676-4772695 MsG0480018429.01.T01:CDS 40.0%
TACAATGCAGCAAAGAGATC+CGG + Chr4:4773075-4773094 MsG0480018429.01.T01:CDS 40.0%
TACCAATAACGCCCAAACAT+GGG - Chr4:4773617-4773636 None:intergenic 40.0%
TCAGTGTAAACCCCTTGAAA+GGG - Chr4:4772412-4772431 None:intergenic 40.0%
TCTGACATAGGTACATCACT+GGG - Chr4:4772538-4772557 None:intergenic 40.0%
TCTGAGTCCTCAGAAAAGTA+TGG - Chr4:4774790-4774809 None:intergenic 40.0%
TCTGCAGCATTTGCATGATA+TGG - Chr4:4773677-4773696 None:intergenic 40.0%
TGACGACACATCATACGATT+CGG - Chr4:4774272-4774291 None:intergenic 40.0%
TGACGTTCACTTTGACGAAT+AGG + Chr4:4772593-4772612 MsG0480018429.01.T01:CDS 40.0%
TGCTCAAAATGGTTCAACTG+AGG + Chr4:4773637-4773656 MsG0480018429.01.T01:CDS 40.0%
TGTTAATGGGGATTGGATTC+AGG + Chr4:4772120-4772139 MsG0480018429.01.T01:CDS 40.0%
TTCAGTGTAAACCCCTTGAA+AGG - Chr4:4772413-4772432 None:intergenic 40.0%
TTCGTCAAAGTGAACGTCAA+TGG - Chr4:4772592-4772611 None:intergenic 40.0%
TTCTGACATAGGTACATCAC+TGG - Chr4:4772539-4772558 None:intergenic 40.0%
TTGGGAGTCAAATGTGAACT+TGG - Chr4:4772710-4772729 None:intergenic 40.0%
TTGTGTTACCTACAGAACTC+TGG + Chr4:4773324-4773343 MsG0480018429.01.T01:CDS 40.0%
! GTGATGGGAATTACTAGAGA+TGG + Chr4:4772310-4772329 MsG0480018429.01.T01:CDS 40.0%
! TAGGAATGATAATTTGCCGG+GGG + Chr4:4772177-4772196 MsG0480018429.01.T01:CDS 40.0%
! TATCTGCTGCATCTGATTTG+AGG + Chr4:4772053-4772072 MsG0480018429.01.T01:CDS 40.0%
! TGAGTCAGGTTCTGACATTT+GGG + Chr4:4774926-4774945 MsG0480018429.01.T01:CDS 40.0%
!! GATCTCACTTTTCATGTCTC+AGG + Chr4:4773521-4773540 MsG0480018429.01.T01:CDS 40.0%
!! TGCTGCATTGTATCGATTCT+CGG - Chr4:4773067-4773086 None:intergenic 40.0%
!! TGTTCTGAGATTCTTCTGAC+TGG - Chr4:4774539-4774558 None:intergenic 40.0%
!!! TTTTCCGCACTTTTTCTCGA+GGG + Chr4:4773767-4773786 MsG0480018429.01.T01:CDS 40.0%
!!! TTTTTCCGCACTTTTTCTCG+AGG + Chr4:4773766-4773785 MsG0480018429.01.T01:CDS 40.0%
AAACCAATCCTGCGAATCCA+TGG + Chr4:4772497-4772516 MsG0480018429.01.T01:CDS 45.0%
AACCAATCCTGCGAATCCAT+GGG + Chr4:4772498-4772517 MsG0480018429.01.T01:CDS 45.0%
AAGACCCTCGAGAAAAAGTG+CGG - Chr4:4773774-4773793 None:intergenic 45.0%
AAGCGACATGTTGTTGACAC+CGG - Chr4:4773097-4773116 None:intergenic 45.0%
AATTTCATCGGACTACCACG+CGG - Chr4:4772217-4772236 None:intergenic 45.0%
ACTGAATCGAAGAGAAACGG+TGG + Chr4:4772427-4772446 MsG0480018429.01.T01:CDS 45.0%
AGCTAGTTCACAGTTTCCTG+AGG + Chr4:4771946-4771965 MsG0480018429.01.T01:CDS 45.0%
AGTCTTAGCGGGAAAGGTTA+TGG + Chr4:4773740-4773759 MsG0480018429.01.T01:CDS 45.0%
ATCGAAAGCTGAGAATGTCC+AGG - Chr4:4772388-4772407 None:intergenic 45.0%
ATTCTCATTCGTTGCCGGAT+TGG + Chr4:4774584-4774603 MsG0480018429.01.T01:CDS 45.0%
CAGAGCTATGATCTTGAGTC+TGG + Chr4:4773866-4773885 MsG0480018429.01.T01:CDS 45.0%
CAGCTTTCGATTCCCTTTCA+AGG + Chr4:4772397-4772416 MsG0480018429.01.T01:CDS 45.0%
CGGATATGGATCACATGCTT+TGG - Chr4:4772743-4772762 None:intergenic 45.0%
CTAGTTCCAGGTATCAATGG+TGG + Chr4:4775012-4775031 MsG0480018429.01.T01:CDS 45.0%
CTGAATCGAAGAGAAACGGT+GGG + Chr4:4772428-4772447 MsG0480018429.01.T01:CDS 45.0%
GAGGATGTCCTTTCACAAAG+AGG + Chr4:4774058-4774077 MsG0480018429.01.T01:CDS 45.0%
GCAGCTGGTCATAGTAATAC+TGG + Chr4:4773000-4773019 MsG0480018429.01.T01:CDS 45.0%
GCTTTCGATTCCCTTTCAAG+GGG + Chr4:4772399-4772418 MsG0480018429.01.T01:CDS 45.0%
GGGATCTGGAAATCTTCTAG+TGG + Chr4:4773126-4773145 MsG0480018429.01.T01:CDS 45.0%
GGTTCACATATCATCGCAGT+TGG + Chr4:4772675-4772694 MsG0480018429.01.T01:CDS 45.0%
GTACCAAACTGGAGATGCAA+TGG + Chr4:4772862-4772881 MsG0480018429.01.T01:CDS 45.0%
GTACCATTGCATCTCCAGTT+TGG - Chr4:4772868-4772887 None:intergenic 45.0%
GTGCTAGGTGTTCAATCTCT+TGG + Chr4:4774193-4774212 MsG0480018429.01.T01:CDS 45.0%
TAATGGGGATTGGATTCAGG+AGG + Chr4:4772123-4772142 MsG0480018429.01.T01:CDS 45.0%
TCGTATGATGTGTCGTCATC+TGG + Chr4:4774274-4774293 MsG0480018429.01.T01:CDS 45.0%
TCTGCACAACTGAGTCTTAG+CGG + Chr4:4773728-4773747 MsG0480018429.01.T01:CDS 45.0%
TGAATCGAAGAGAAACGGTG+GGG + Chr4:4772429-4772448 MsG0480018429.01.T01:CDS 45.0%
TGTGTCGTCATCTGGTACTT+TGG + Chr4:4774282-4774301 MsG0480018429.01.T01:CDS 45.0%
TTAGTGTCTACAAAGGGCCA+AGG + Chr4:4772791-4772810 MsG0480018429.01.T01:CDS 45.0%
TTATCAGTGGGGACACAATG+CGG - Chr4:4774442-4774461 None:intergenic 45.0%
TTCTCATTCGTTGCCGGATT+GGG + Chr4:4774585-4774604 MsG0480018429.01.T01:CDS 45.0%
TTGGACTTGTCGATGCCAAA+GGG + Chr4:4773172-4773191 MsG0480018429.01.T01:intron 45.0%
! ACACTTTCTGAAAAAGCCGC+AGG - Chr4:4774378-4774397 None:intergenic 45.0%
! AGGAATGATAATTTGCCGGG+GGG + Chr4:4772178-4772197 MsG0480018429.01.T01:CDS 45.0%
! CACTTTCTGAAAAAGCCGCA+GGG - Chr4:4774377-4774396 None:intergenic 45.0%
! CTGAGTCAGGTTCTGACATT+TGG + Chr4:4774925-4774944 MsG0480018429.01.T01:CDS 45.0%
! CTTGATTTTCGGTTATGGCC+TGG + Chr4:4772367-4772386 MsG0480018429.01.T01:CDS 45.0%
! GGATTTTTCATCCACTCCCA+TGG - Chr4:4772517-4772536 None:intergenic 45.0%
! GTACTTTGGAGAACAGTGAG+TGG + Chr4:4774296-4774315 MsG0480018429.01.T01:CDS 45.0%
! TTCAGAAAGTGTGGAAGTCG+CGG + Chr4:4774386-4774405 MsG0480018429.01.T01:CDS 45.0%
! TTCTAGTGGACAGCTTTGCA+TGG + Chr4:4773140-4773159 MsG0480018429.01.T01:CDS 45.0%
!! AGAGGGTGTTGTGTTTGCTA+GGG + Chr4:4772452-4772471 MsG0480018429.01.T01:CDS 45.0%
!! CCCGAGAGTTGATATTCAGA+TGG + Chr4:4773574-4773593 MsG0480018429.01.T01:CDS 45.0%
!! GAACCGAAGAGTATCATCGT+CGG - Chr4:4773990-4774009 None:intergenic 45.0%
!! GCATTGTATCGATTCTCGGA+TGG - Chr4:4773063-4773082 None:intergenic 45.0%
!! GGTGGTGTTGTTGGTATGAA+AGG + Chr4:4772085-4772104 MsG0480018429.01.T01:CDS 45.0%
!! TGAACGGCTCGTTTTTCTCA+AGG - Chr4:4773412-4773431 None:intergenic 45.0%
!! TTTCACAAAGAGGCGTCGAA+GGG + Chr4:4774068-4774087 MsG0480018429.01.T01:CDS 45.0%
!!! TGCGGCTTTTTCAGAAAGTG+TGG + Chr4:4774377-4774396 MsG0480018429.01.T01:CDS 45.0%
AAACACCGCAGACACCTTAG+TGG - Chr4:4773028-4773047 None:intergenic 50.0%
AGTGGACAGCTTTGCATGGT+TGG + Chr4:4773144-4773163 MsG0480018429.01.T01:intron 50.0%
CAACTGAGTCTTAGCGGGAA+AGG + Chr4:4773734-4773753 MsG0480018429.01.T01:CDS 50.0%
CAGATGGAGATACTCTCCGT+TGG + Chr4:4773590-4773609 MsG0480018429.01.T01:CDS 50.0%
CTGCACAACTGAGTCTTAGC+GGG + Chr4:4773729-4773748 MsG0480018429.01.T01:CDS 50.0%
CTTCGACGCCTCTTTGTGAA+AGG - Chr4:4774069-4774088 None:intergenic 50.0%
CTTGGACTTGTCGATGCCAA+AGG + Chr4:4773171-4773190 MsG0480018429.01.T01:intron 50.0%
GACCCATGTTTGGGCGTTAT+TGG + Chr4:4773612-4773631 MsG0480018429.01.T01:CDS 50.0%
GCGTGGTAGTCCGATGAAAT+TGG + Chr4:4772216-4772235 MsG0480018429.01.T01:CDS 50.0%
GCTTCTGCATCTGTGACTAG+AGG - Chr4:4774229-4774248 None:intergenic 50.0%
GGACCGACGATGATACTCTT+CGG + Chr4:4773984-4774003 MsG0480018429.01.T01:CDS 50.0%
GTTATCTGTGAGCAAGCAGC+TGG + Chr4:4772985-4773004 MsG0480018429.01.T01:CDS 50.0%
GTTCCAGGTATCAATGGTGG+TGG + Chr4:4775015-4775034 MsG0480018429.01.T01:CDS 50.0%
TATCGTTGCTGCTAACCCTG+CGG + Chr4:4774359-4774378 MsG0480018429.01.T01:CDS 50.0%
TCACCACCACCATTGATACC+TGG - Chr4:4775021-4775040 None:intergenic 50.0%
TCCAATTCCTTCGCCCAATC+CGG - Chr4:4774601-4774620 None:intergenic 50.0%
TCTCCGTTGGACCCATGTTT+GGG + Chr4:4773603-4773622 MsG0480018429.01.T01:CDS 50.0%
! AACATGTCGCTTGCTACCGA+AGG + Chr4:4773105-4773124 MsG0480018429.01.T01:CDS 50.0%
! ACATGTCGCTTGCTACCGAA+GGG + Chr4:4773106-4773125 MsG0480018429.01.T01:CDS 50.0%
! CTTTGCATGGTTGGTTGCCT+TGG + Chr4:4773153-4773172 MsG0480018429.01.T01:intron 50.0%
! GCTTCCTGAGTGGTTTGCAA+TGG - Chr4:4774693-4774712 None:intergenic 50.0%
! TGGTTCCACTAAGGTGTCTG+CGG + Chr4:4773020-4773039 MsG0480018429.01.T01:CDS 50.0%
!! CTTTCACAAAGAGGCGTCGA+AGG + Chr4:4774067-4774086 MsG0480018429.01.T01:CDS 50.0%
!! CTTTGGCATCGACAAGTCCA+AGG - Chr4:4773173-4773192 None:intergenic 50.0%
!! GAGAGGGTGTTGTGTTTGCT+AGG + Chr4:4772451-4772470 MsG0480018429.01.T01:CDS 50.0%
!! GCAGGATTGGTTTCTCGAGT+TGG - Chr4:4772490-4772509 None:intergenic 50.0%
AATTTGCCGGGGGGTTTGTC+AGG + Chr4:4772187-4772206 MsG0480018429.01.T01:CDS 55.0%
ACGCCCAAACATGGGTCCAA+CGG - Chr4:4773609-4773628 None:intergenic 55.0%
ACTAGCCACCGAGTTGTCGT+CGG - Chr4:4773929-4773948 None:intergenic 55.0%
ATCCACTCCCATGGATTCGC+AGG - Chr4:4772508-4772527 None:intergenic 55.0%
ATCCTGCGAATCCATGGGAG+TGG + Chr4:4772503-4772522 MsG0480018429.01.T01:CDS 55.0%
CCTATCCTCCGACGACAACT+CGG + Chr4:4773918-4773937 MsG0480018429.01.T01:CDS 55.0%
CTCCCATGGATTCGCAGGAT+TGG - Chr4:4772503-4772522 None:intergenic 55.0%
CTCTCCGTTGGACCCATGTT+TGG + Chr4:4773602-4773621 MsG0480018429.01.T01:CDS 55.0%
CTGCACACGAGGCATAGGAT+CGG - Chr4:4773552-4773571 None:intergenic 55.0%
GAAGAGAAACGGTGGGGAGA+GGG + Chr4:4772435-4772454 MsG0480018429.01.T01:CDS 55.0%
GACACAATGCGGCTCAGAAG+AGG - Chr4:4774431-4774450 None:intergenic 55.0%
GGGCTATGACAAGCTGAGTC+AGG + Chr4:4774912-4774931 MsG0480018429.01.T01:CDS 55.0%
GGGGATTGGATTCAGGAGGA+TGG + Chr4:4772127-4772146 MsG0480018429.01.T01:CDS 55.0%
GGTGTCTGCGGTGTTTAGAG+CGG + Chr4:4773032-4773051 MsG0480018429.01.T01:CDS 55.0%
TGCACACGAGGCATAGGATC+GGG - Chr4:4773551-4773570 None:intergenic 55.0%
ATCCTCCGACGACAACTCGG+TGG + Chr4:4773921-4773940 MsG0480018429.01.T01:CDS 60.0%
CCGAGTTGTCGTCGGAGGAT+AGG - Chr4:4773921-4773940 None:intergenic 60.0%
CGAAGAGAAACGGTGGGGAG+AGG + Chr4:4772434-4772453 MsG0480018429.01.T01:CDS 60.0%
CGATCCTATGCCTCGTGTGC+AGG + Chr4:4773550-4773569 MsG0480018429.01.T01:CDS 60.0%
GGATCTCCTGACAAACCCCC+CGG - Chr4:4772196-4772215 None:intergenic 60.0%
GGTTTGTCAGGAGATCCGCG+TGG + Chr4:4772199-4772218 MsG0480018429.01.T01:CDS 60.0%
! CGCTTGCTACCGAAGGGATC+TGG + Chr4:4773112-4773131 MsG0480018429.01.T01:CDS 60.0%
! GCCGGATTGGGCGAAGGAAT+TGG + Chr4:4774597-4774616 MsG0480018429.01.T01:CDS 60.0%
! TTCGTTGCCGGATTGGGCGA+AGG + Chr4:4774591-4774610 MsG0480018429.01.T01:CDS 60.0%
!! GAGGCGTCGAAGGGATTCTC+CGG + Chr4:4774077-4774096 MsG0480018429.01.T01:CDS 60.0%
AGCCACCGAGTTGTCGTCGG+AGG - Chr4:4773926-4773945 None:intergenic 65.0%
! GCAGAGACGTGCGAGCATCG+TGG + Chr4:4773831-4773850 MsG0480018429.01.T01:CDS 65.0%
ACTCTCGGGGCCTGCACACG+AGG - Chr4:4773563-4773582 None:intergenic 70.0%
GGGGCCTGCACACGAGGCAT+AGG - Chr4:4773557-4773576 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 4771884 4775071 4771884 ID=MsG0480018429.01;Name=MsG0480018429.01
Chr4 mRNA 4771884 4775071 4771884 ID=MsG0480018429.01.T01;Parent=MsG0480018429.01;Name=MsG0480018429.01.T01;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|1|1|2|0|1008
Chr4 exon 4771884 4773161 4771884 ID=MsG0480018429.01.T01:exon:1730;Parent=MsG0480018429.01.T01
Chr4 exon 4773323 4775071 4773323 ID=MsG0480018429.01.T01:exon:1731;Parent=MsG0480018429.01.T01
Chr4 CDS 4771884 4773161 4771884 ID=MsG0480018429.01.T01:cds;Parent=MsG0480018429.01.T01
Chr4 CDS 4773323 4775071 4773323 ID=MsG0480018429.01.T01:cds;Parent=MsG0480018429.01.T01
Gene Sequence

>MsG0480018429.01.T01

ATGAAGTTCACATTTTTACCTATAGCTCTTTGTTTTCTTTGTCAATTGTTGGTCATTGTTGTAGCTAGTTCACAGTTTCCTGAGGAAATGTATAGATTTGATAGGAAATCTCATGTGGGCTATAAGTATGATAGAATTGATGAAGTAAAGAAACAATGTGGGTTTGTGTTATCTGCTGCATCTGATTTGAGGTTTGATTATGGTGGTGTTGTTGGTATGAAAGGTGAGCTTTCTTTTGTTAATGGGGATTGGATTCAGGAGGATGGTAAGTTTCCCATTATGCCATTTGATGATAGGAATGATAATTTGCCGGGGGGTTTGTCAGGAGATCCGCGTGGTAGTCCGATGAAATTGGTGTCTTTTAGGGTAACAGATGTTGATCATGCTCATAGGTTGAAGAAGTCGATCCCTATTAATGGTTTCATGGTGATGGGAATTACTAGAGATGGTAATTTTATGGACAATGTGTATGATAATGGGAATCTTGATTTTCGGTTATGGCCTGGACATTCTCAGCTTTCGATTCCCTTTCAAGGGGTTTACACTGAATCGAAGAGAAACGGTGGGGAGAGGGTGTTGTGTTTGCTAGGGAACACTATGCTTCCAACTCGAGAAACCAATCCTGCGAATCCATGGGAGTGGATGAAAAATCCCAGTGATGTACCTATGTCAGAAGATGATCAAATTCTGTTGGTTCTTCGATATCCATTGACGTTCACTTTGACGAATAGGATGATAACTGGAGAGTTAAGAAGTTTGAACCGTGATTCGAATTCTAAATACTTTGATGTGGTTCACATATCATCGCAGTTGGGTAGCTCAGCCAAGTTCACATTTGACTCCCAACATATTTTATCCAAAGCATGTGATCCATATCCGTATAAAGATAACATGACAGATAATGTCATTAGTGTCTACAAAGGGCCAAGGTTTTGTGAAATCCTTGAAGAAGTTACTAGAGATAAACCTTTATCTGTTGTACCAAACTGGAGATGCAATGGTACAGATGATTTCTGCAGTAGATTAGGTCCTTTTTTGTCGGATGAGAGAATCAAATCGACACATGGAGGATTTCAAGATGTTAAACTTTATATGCAGGATGTTATCTGTGAGCAAGCAGCTGGTCATAGTAATACTGGTTCCACTAAGGTGTCTGCGGTGTTTAGAGCGGTTTCTCCATCCGAGAATCGATACAATGCAGCAAAGAGATCCGGTGTCAACAACATGTCGCTTGCTACCGAAGGGATCTGGAAATCTTCTAGTGGACAGCTTTGCATGCTTGTGTTACCTACAGAACTCTGGAATTATTTCACGTTCACTCATCCGAATTACAGTTACTCAAAAATTAATATTGCTGGCGCTGTCCTTGAGAAAAACGAGCCGTTCACTTTTTCAACCGTCATTAAGAAATCGTTGCTAACTTTCCCTAAACTTGAAGATGAGACATTTCAAGAGAGTCTCTCCCTTCTTTCAGAAGATCTCACTTTTCATGTCTCAGGTTTTCCCGATCCTATGCCTCGTGTGCAGGCCCCGAGAGTTGATATTCAGATGGAGATACTCTCCGTTGGACCCATGTTTGGGCGTTATTGGTATGCTCAAAATGGTTCAACTGAGGAACAACAAGAAACACCATATCATGCAAATGCTGCAGAATATACTGAAAAACAGCTTCTTTTAAATGTATCTGCACAACTGAGTCTTAGCGGGAAAGGTTATGGTAATTTTTCCGCACTTTTTCTCGAGGGTCTTTATGATCCACATGTTGGAAAGATGTATCTTATTGGTTGCAGAGACGTGCGAGCATCGTGGAATGTCTTATATCAGAGCTATGATCTTGAGTCTGGAATGGACTGTTTAATTGAGGTGGTCGTTTCCTATCCTCCGACGACAACTCGGTGGCTAGTCAACCCCACTGCCACAATTTCTATAGAAAGTCAAAGGACCGACGATGATACTCTTCGGTTCGATACAATAAAGCTCCAGACTTTTCCAATCATATACAGAAAGCAACGTGAGGATGTCCTTTCACAAAGAGGCGTCGAAGGGATTCTCCGGATCTTAACACTTACATTGGCAGTTGGTTGCATTTTAAGCCAACTTTTTTACATAAAGCACAATGTGGATTCTCTTCCATATATATCTCTTGTTGTGCTAGGTGTTCAATCTCTTGGTTATAGCATTCCTCTAGTCACAGATGCAGAAGCTCTTTTCAAGAGAATGGTTTCCGAATCGTATGATGTGTCGTCATCTGGTACTTTGGAGAACAGTGAGTGGCTCCATATCATTGATTACACTGTGAAACTTTTGTTGATTGTATCGTTGCTGCTAACCCTGCGGCTTTTTCAGAAAGTGTGGAAGTCGCGGATCAGATTGCAAACACGTACCTCTTCTGAGCCGCATTGTGTCCCCACTGATAAAAAAGTACTTCTTTGTACCTTCGCCTTACATATCATTGGTTACATAGTTGTTCTAGTAATTCATGCCACAAAAACCAGTCAGAAGAATCTCAGAACAGAAAAATATATGTATGCTAAAGAGAATTCTCATTCGTTGCCGGATTGGGCGAAGGAATTGGAAGAATATGCAGGTCTTGTCCAAGACTTTTTCTTGTTTCCCCAAATCATTGGAAACTTAATGTGGCAAATCCATTGCAAACCACTCAGGAAGCTGTATTTCATTGGAATCACTGTAGTAAGGCTTCTTCCTCATATATATGATTACATTCGAGCTCCGGTTCCAAATCCATACTTTTCTGAGGACTCAGAATTTATCAACCCAAGTTTGGATTTTTACTCGAAATTTGGTGACATTGCCATCCCTGTGACTGCAATTATTCTTGCAATTTTGGTCTATATTCAACAAAGATTGGGCTATGACAAGCTGAGTCAGGTTCTGACATTTGGGCAGTATAAGCTTCTTCCTACTTTTAGATATGAAAGGTTGGATTCTAAGTCCTTTGAAACTGAACTAGTTCCAGGTATCAATGGTGGTGGTGAAAGTAAGAAAGAACAAGTTGATGAAGAATGA

Protein sequence

>MsG0480018429.01.T01

MKFTFLPIALCFLCQLLVIVVASSQFPEEMYRFDRKSHVGYKYDRIDEVKKQCGFVLSAASDLRFDYGGVVGMKGELSFVNGDWIQEDGKFPIMPFDDRNDNLPGGLSGDPRGSPMKLVSFRVTDVDHAHRLKKSIPINGFMVMGITRDGNFMDNVYDNGNLDFRLWPGHSQLSIPFQGVYTESKRNGGERVLCLLGNTMLPTRETNPANPWEWMKNPSDVPMSEDDQILLVLRYPLTFTLTNRMITGELRSLNRDSNSKYFDVVHISSQLGSSAKFTFDSQHILSKACDPYPYKDNMTDNVISVYKGPRFCEILEEVTRDKPLSVVPNWRCNGTDDFCSRLGPFLSDERIKSTHGGFQDVKLYMQDVICEQAAGHSNTGSTKVSAVFRAVSPSENRYNAAKRSGVNNMSLATEGIWKSSSGQLCMLVLPTELWNYFTFTHPNYSYSKINIAGAVLEKNEPFTFSTVIKKSLLTFPKLEDETFQESLSLLSEDLTFHVSGFPDPMPRVQAPRVDIQMEILSVGPMFGRYWYAQNGSTEEQQETPYHANAAEYTEKQLLLNVSAQLSLSGKGYGNFSALFLEGLYDPHVGKMYLIGCRDVRASWNVLYQSYDLESGMDCLIEVVVSYPPTTTRWLVNPTATISIESQRTDDDTLRFDTIKLQTFPIIYRKQREDVLSQRGVEGILRILTLTLAVGCILSQLFYIKHNVDSLPYISLVVLGVQSLGYSIPLVTDAEALFKRMVSESYDVSSSGTLENSEWLHIIDYTVKLLLIVSLLLTLRLFQKVWKSRIRLQTRTSSEPHCVPTDKKVLLCTFALHIIGYIVVLVIHATKTSQKNLRTEKYMYAKENSHSLPDWAKELEEYAGLVQDFFLFPQIIGNLMWQIHCKPLRKLYFIGITVVRLLPHIYDYIRAPVPNPYFSEDSEFINPSLDFYSKFGDIAIPVTAIILAILVYIQQRLGYDKLSQVLTFGQYKLLPTFRYERLDSKSFETELVPGINGGGESKKEQVDEE*