AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018452.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018452.01.T01 MTR_4g011880 98.315 178 3 0 1 178 1 178 1.89e-127 355
MsG0480018452.01.T01 MTR_1g076270 49.123 171 74 5 6 166 11 178 8.93e-47 151
MsG0480018452.01.T01 MTR_1g093350 49.123 171 74 5 6 166 11 178 8.93e-47 151
MsG0480018452.01.T01 MTR_1g070830 46.597 191 73 4 6 167 12 202 3.87e-46 150
MsG0480018452.01.T01 MTR_1g040675 44.505 182 78 4 8 167 3 183 1.19e-44 146
MsG0480018452.01.T01 MTR_1g070520 42.411 224 63 9 11 172 18 237 3.17e-42 142
MsG0480018452.01.T01 MTR_1g093240 41.410 227 75 6 1 169 1 227 4.68e-42 141
MsG0480018452.01.T01 MTR_1g093240 41.304 230 75 7 1 172 1 228 3.26e-41 139
MsG0480018452.01.T01 MTR_6g488150 39.916 238 74 9 2 172 11 246 4.80e-41 139
MsG0480018452.01.T01 MTR_5g067350 47.853 163 54 5 37 172 181 339 5.52e-41 141
MsG0480018452.01.T01 MTR_1g080860 40.789 228 69 6 6 167 15 242 7.35e-41 138
MsG0480018452.01.T01 MTR_1g080860 40.343 233 71 7 6 172 15 245 2.16e-40 137
MsG0480018452.01.T01 MTR_5g030710 49.669 151 44 5 52 172 179 327 2.23e-39 137
MsG0480018452.01.T01 MTR_2g101500 49.007 151 45 4 52 172 170 318 5.33e-39 135
MsG0480018452.01.T01 MTR_8g103030 48.667 150 46 3 52 172 138 285 1.03e-38 134
MsG0480018452.01.T01 MTR_8g067530 47.305 167 54 6 35 172 187 348 2.83e-38 134
MsG0480018452.01.T01 MTR_7g096090 47.297 148 49 4 52 172 97 242 4.42e-38 131
MsG0480018452.01.T01 MTR_1g040675 42.236 161 70 4 8 146 3 162 1.41e-33 117
MsG0480018452.01.T01 MTR_1g093240 38.725 204 67 6 1 146 1 204 9.26e-31 111
MsG0480018452.01.T01 MTR_2g102490 38.857 175 88 6 11 168 19 191 1.53e-29 107
MsG0480018452.01.T01 MTR_1g069495 31.443 194 69 3 47 176 75 268 5.85e-25 97.8
MsG0480018452.01.T01 MTR_2g100780 31.325 166 60 3 55 168 97 260 8.17e-23 92.0
MsG0480018452.01.T01 MTR_2g100780 31.098 164 59 3 55 166 97 258 3.85e-22 90.5
MsG0480018452.01.T01 MTR_8g014520 31.737 167 69 3 47 168 100 266 7.97e-22 89.4
MsG0480018452.01.T01 MTR_8g014520 31.928 166 68 3 47 167 100 265 1.61e-21 88.6
MsG0480018452.01.T01 MTR_1g085750 47.423 97 46 3 73 166 82 176 3.47e-20 83.2
MsG0480018452.01.T01 MTR_6g488150 34.940 166 57 6 2 116 11 176 2.01e-19 81.6
MsG0480018452.01.T01 MTR_4g124300 38.596 114 62 4 52 159 69 180 7.95e-18 77.0
MsG0480018452.01.T01 MTR_4g115075 33.088 136 64 4 44 159 77 205 3.57e-17 75.9
MsG0480018452.01.T01 MTR_7g110790 42.105 95 52 2 73 165 67 160 5.90e-17 74.3
MsG0480018452.01.T01 MTR_5g067350 42.857 91 37 2 38 114 181 270 6.82e-17 76.3
MsG0480018452.01.T01 MTR_3g106850 30.286 175 89 6 4 159 46 206 4.11e-15 70.5
MsG0480018452.01.T01 MTR_1g109510 33.613 119 69 2 53 161 52 170 1.39e-13 65.9
MsG0480018452.01.T01 MTR_1g085750 44.156 77 39 2 73 146 82 157 1.58e-12 62.4
MsG0480018452.01.T01 MTR_4g124900 33.010 103 65 2 66 168 962 1060 7.67e-11 60.5
MsG0480018452.01.T01 MTR_4g124900 33.010 103 65 2 66 168 985 1083 7.69e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018452.01.T01 AT3G15540 60.309 194 55 5 1 172 1 194 3.29e-69 209
MsG0480018452.01.T01 AT1G52830 56.842 190 58 7 1 169 1 187 2.66e-61 188
MsG0480018452.01.T01 AT1G15580 57.143 175 53 7 1 165 1 163 3.25e-51 162
MsG0480018452.01.T01 AT5G43700 51.977 177 69 4 4 167 9 182 2.91e-48 155
MsG0480018452.01.T01 AT1G04240 48.913 184 74 4 4 167 3 186 5.81e-47 152
MsG0480018452.01.T01 AT1G04240 48.913 184 74 4 4 167 103 286 1.08e-46 154
MsG0480018452.01.T01 AT3G04730 42.795 229 67 8 6 172 2 228 3.13e-42 141
MsG0480018452.01.T01 AT3G23030 50.000 166 74 4 6 166 9 170 1.16e-40 135
MsG0480018452.01.T01 AT4G14550 42.784 194 76 6 3 167 30 217 3.10e-40 136
MsG0480018452.01.T01 AT3G23030 50.000 166 74 4 6 166 96 257 6.79e-40 136
MsG0480018452.01.T01 AT4G14550 42.211 199 78 7 3 172 30 220 6.82e-40 135
MsG0480018452.01.T01 AT1G04250 44.103 195 80 7 3 172 31 221 2.79e-39 134
MsG0480018452.01.T01 AT3G23050 39.827 231 73 8 6 172 6 234 1.97e-38 132
MsG0480018452.01.T01 AT4G29080 48.101 158 42 4 52 171 141 296 2.65e-38 133
MsG0480018452.01.T01 AT2G22670 48.630 146 45 4 52 167 163 308 5.28e-38 133
MsG0480018452.01.T01 AT2G22670 48.630 146 45 4 52 167 163 308 5.28e-38 133
MsG0480018452.01.T01 AT4G14560 49.383 162 76 4 5 163 6 164 2.58e-37 127
MsG0480018452.01.T01 AT2G22670 48.322 149 45 5 52 170 163 309 2.75e-37 131
MsG0480018452.01.T01 AT2G22670 48.322 149 45 5 52 170 163 309 2.75e-37 131
MsG0480018452.01.T01 AT2G22670 48.322 149 45 5 52 170 180 326 3.66e-37 131
MsG0480018452.01.T01 AT5G65670 49.333 150 47 4 52 172 181 330 4.30e-37 131
MsG0480018452.01.T01 AT5G65670 50.000 150 44 5 52 172 181 328 3.23e-36 129
MsG0480018452.01.T01 AT4G14550 38.953 172 70 6 3 145 30 195 2.71e-28 104
MsG0480018452.01.T01 AT4G28640 38.182 165 61 3 44 167 78 242 7.13e-28 105
MsG0480018452.01.T01 AT2G33310 36.875 160 58 4 51 167 72 231 1.03e-27 104
MsG0480018452.01.T01 AT2G33310 36.875 160 58 4 51 167 72 231 1.03e-27 104
MsG0480018452.01.T01 AT2G33310 35.928 167 64 4 44 167 66 232 1.09e-27 104
MsG0480018452.01.T01 AT4G28640 38.037 163 60 3 44 165 78 240 1.60e-27 103
MsG0480018452.01.T01 AT4G28640 37.423 163 61 2 44 165 78 240 4.33e-27 103
MsG0480018452.01.T01 AT3G23050 36.585 205 66 7 6 146 6 210 6.77e-27 101
MsG0480018452.01.T01 AT5G25890 34.483 174 89 6 12 171 8 170 2.87e-25 96.3
MsG0480018452.01.T01 AT1G04550 35.849 159 60 4 51 167 66 224 2.13e-23 93.2
MsG0480018452.01.T01 AT3G16500 37.333 150 51 5 55 162 104 252 3.62e-22 90.5
MsG0480018452.01.T01 AT3G16500 37.333 150 51 5 55 162 104 252 4.96e-22 90.1
MsG0480018452.01.T01 AT1G51950 34.194 155 54 4 55 162 97 250 1.04e-21 89.4
MsG0480018452.01.T01 AT3G17600 38.053 113 53 3 58 159 48 154 8.23e-21 84.3
MsG0480018452.01.T01 AT3G62100 44.086 93 47 2 70 159 78 168 4.43e-19 80.1
MsG0480018452.01.T01 AT2G46990 43.956 91 50 1 70 159 80 170 1.20e-18 79.0
MsG0480018452.01.T01 AT1G04100 31.765 170 62 4 52 167 91 260 1.32e-18 80.9
MsG0480018452.01.T01 AT2G01200 37.000 100 63 0 64 163 88 187 2.84e-15 70.5
MsG0480018452.01.T01 AT2G01200 37.000 100 63 0 64 163 88 187 2.84e-15 70.5
MsG0480018452.01.T01 AT4G14550 37.097 124 57 4 3 111 30 147 8.48e-15 69.3
MsG0480018452.01.T01 AT1G15050 41.237 97 54 1 70 163 53 149 9.13e-15 68.6
MsG0480018452.01.T01 AT1G15050 41.237 97 54 1 70 163 85 181 3.55e-14 67.4
MsG0480018452.01.T01 AT2G46990 44.872 78 42 1 70 146 80 157 2.04e-13 65.1
MsG0480018452.01.T01 AT3G62100 43.750 80 40 2 70 146 78 155 2.22e-13 64.7
MsG0480018452.01.T01 AT3G23050 33.974 156 53 5 6 111 6 161 2.86e-13 64.7
MsG0480018452.01.T01 AT1G80390 36.449 107 56 3 11 109 19 121 4.01e-13 63.5
MsG0480018452.01.T01 AT4G32280 36.471 85 50 1 75 159 118 198 2.48e-12 63.2
MsG0480018452.01.T01 AT4G32280 29.032 155 61 4 50 159 90 240 4.80e-12 62.8

Find 55 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATCTTTGTCCTCATAAA+TGG 0.166743 4:+5057838 None:intergenic
AGATCAGATGCAAAGGGTTT+TGG 0.274758 4:-5056738 MsG0480018452.01.T01:CDS
CTCTTTGGTTGTTGTGGAAT+TGG 0.284623 4:-5060066 MsG0480018452.01.T01:intron
TTGGCTTTGGAGAAGCTCTT+TGG 0.296767 4:-5060081 MsG0480018452.01.T01:CDS
AATCTCTTTAAAGATCCTTT+TGG 0.324461 4:+5056708 None:intergenic
CTTCATTCATGTTCTTCTTC+CGG 0.340312 4:+5060196 None:intergenic
ATTGATCTTGATTTGCATAA+GGG 0.341876 4:-5060120 MsG0480018452.01.T01:CDS
GACGGTGGTGGGGAAGAAAA+TGG 0.343003 4:-5060285 MsG0480018452.01.T01:CDS
CTTGGAGTTAGCTTTGGCTT+TGG 0.358485 4:-5060094 MsG0480018452.01.T01:CDS
GGGATACTTGGAGTTAGCTT+TGG 0.382944 4:-5060100 MsG0480018452.01.T01:CDS
TGATTTGCATAAGGGATACT+TGG 0.403390 4:-5060112 MsG0480018452.01.T01:CDS
GATTGATCTTGATTTGCATA+AGG 0.421159 4:-5060121 MsG0480018452.01.T01:CDS
TTCTCCGAGATTGACGGTGG+TGG 0.434086 4:-5060297 MsG0480018452.01.T01:CDS
TGAACACGTTCCCATTTATG+AGG 0.437761 4:-5057849 MsG0480018452.01.T01:CDS
GTTGACAGAGGAAGCGTTGA+AGG 0.440080 4:-5057885 MsG0480018452.01.T01:intron
TGCTGGTTGGAGATGTCCCT+TGG 0.448462 4:-5057808 MsG0480018452.01.T01:CDS
CCATCTTTGTCCTCATAAAT+GGG 0.453303 4:+5057839 None:intergenic
AAAATGGCAAGAGAAGGTTT+TGG 0.457566 4:-5060390 MsG0480018452.01.T01:CDS
TACATGAAGGTTAGCATGGA+TGG 0.465918 4:-5060162 MsG0480018452.01.T01:CDS
AGATCAATCTTACGCAAGTA+AGG 0.472170 4:+5060135 None:intergenic
CCCATTTATGAGGACAAAGA+TGG 0.472932 4:-5057839 MsG0480018452.01.T01:CDS
GGGGAAGAAAATGGAGGTTC+CGG 0.474162 4:-5060276 MsG0480018452.01.T01:CDS
TGAAATAACCGAGCTAAGGT+TGG 0.475513 4:-5060364 MsG0480018452.01.T01:CDS
TTGAATCATGCAAGAGGCTG+AGG 0.476598 4:-5056770 MsG0480018452.01.T01:CDS
TTCCCCACCACCGTCAATCT+CGG 0.483364 4:+5060293 None:intergenic
GAAATAACCGAGCTAAGGTT+GGG 0.491688 4:-5060363 MsG0480018452.01.T01:CDS
CACAAAAGAATGAGAAGAAG+AGG 0.493979 4:-5060323 MsG0480018452.01.T01:CDS
GAGAAGCTCTTTGGTTGTTG+TGG 0.496959 4:-5060072 MsG0480018452.01.T01:CDS
TCAAGTTGTGGGATGGCCTC+CGG 0.501026 4:-5060229 MsG0480018452.01.T01:CDS
GGCCTCCGGTGTGTTCGTAC+CGG 0.521502 4:-5060215 MsG0480018452.01.T01:CDS
GAGAAGAAGAATCAAGTTGT+GGG 0.526986 4:-5060240 MsG0480018452.01.T01:CDS
GACTTGAAATAACCGAGCTA+AGG 0.530961 4:-5060368 MsG0480018452.01.T01:CDS
GCTGGTTGGAGATGTCCCTT+GGG 0.536668 4:-5057807 MsG0480018452.01.T01:CDS
ATGAAGAGATCAGATGCAAA+GGG 0.538721 4:-5056744 MsG0480018452.01.T01:CDS
CGAGAAGAAGAATCAAGTTG+TGG 0.541598 4:-5060241 MsG0480018452.01.T01:CDS
AAAGTTAAAATGGCAAGAGA+AGG 0.543827 4:-5060396 None:intergenic
TCTCCGAGATTGACGGTGGT+GGG 0.547621 4:-5060296 MsG0480018452.01.T01:CDS
AATGTACATGAAGGTTAGCA+TGG 0.548387 4:-5060166 MsG0480018452.01.T01:CDS
CTCCGAGATTGACGGTGGTG+GGG 0.555531 4:-5060295 MsG0480018452.01.T01:CDS
CGGAAGAAGAACATGAATGA+AGG 0.561173 4:-5060195 MsG0480018452.01.T01:CDS
ATGAGGACAAAGATGGTGAC+TGG 0.580465 4:-5057832 MsG0480018452.01.T01:CDS
TATGAAGAGATCAGATGCAA+AGG 0.587250 4:-5056745 MsG0480018452.01.T01:CDS
CAAAGATGGTGACTGGATGC+TGG 0.588150 4:-5057825 MsG0480018452.01.T01:CDS
AGGATGTTCTCCGAGATTGA+CGG 0.605899 4:-5060303 MsG0480018452.01.T01:CDS
GATGGTGACTGGATGCTGGT+TGG 0.609564 4:-5057821 MsG0480018452.01.T01:CDS
AGAAGAATCAAGTTGTGGGA+TGG 0.612662 4:-5060236 MsG0480018452.01.T01:CDS
TGGCAAACCCAACCTTAGCT+CGG 0.615913 4:+5060356 None:intergenic
TGTTTATTGAATCATGCAAG+AGG 0.634299 4:-5056776 MsG0480018452.01.T01:CDS
CCAGAAGGACTTACTCCCAA+GGG 0.657435 4:+5057792 None:intergenic
GCCAGAAGGACTTACTCCCA+AGG 0.663285 4:+5057791 None:intergenic
TTCTTCCGGTACGAACACAC+CGG 0.663449 4:+5060210 None:intergenic
CTAAGGTTGGGTTTGCCATG+TGG 0.667720 4:-5060351 MsG0480018452.01.T01:CDS
ATGTTCTCCGAGATTGACGG+TGG 0.674253 4:-5060300 MsG0480018452.01.T01:CDS
TTCCGGTACGAACACACCGG+AGG 0.690475 4:+5060213 None:intergenic
GGTGGTGGGGAAGAAAATGG+AGG 0.722880 4:-5060282 MsG0480018452.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTAATAATAATAATTA+AGG + Chr4:5060147-5060166 None:intergenic 0.0%
!! TTATTAAAATTTATTAAAAA+TGG + Chr4:5058238-5058257 None:intergenic 0.0%
!!! ATTAAAAAATAAATAAATTT+TGG - Chr4:5060005-5060024 MsG0480018452.01.T01:intron 0.0%
!! AAATAAATTGATAGAATTTA+CGG + Chr4:5059073-5059092 None:intergenic 10.0%
!! ATTATAATCAAGTTTATTAA+GGG + Chr4:5058724-5058743 None:intergenic 10.0%
!! GAGATAAAAAAATATAAAAT+TGG - Chr4:5059444-5059463 MsG0480018452.01.T01:intron 10.0%
!! TTAATAAACTTGATTATAAT+CGG - Chr4:5058724-5058743 MsG0480018452.01.T01:intron 10.0%
!!! AATAATTAAGGTATTTAATT+TGG + Chr4:5060135-5060154 None:intergenic 10.0%
!!! AGAATCTTTAATTTTTATAA+AGG - Chr4:5058512-5058531 MsG0480018452.01.T01:intron 10.0%
!!! CTAATATGAATTTTTAAAAA+CGG - Chr4:5058193-5058212 MsG0480018452.01.T01:intron 10.0%
!!! TAATATGAATTTTTAAAAAC+GGG - Chr4:5058194-5058213 MsG0480018452.01.T01:intron 10.0%
!!! TATTTACATACATATTTTTT+GGG - Chr4:5059495-5059514 MsG0480018452.01.T01:intron 10.0%
!!! TATTTTTTTATCTCTAATTT+TGG + Chr4:5059438-5059457 None:intergenic 10.0%
!! AAAATTTATTAAAAATGGCA+AGG + Chr4:5058233-5058252 None:intergenic 15.0%
!! AAATTTATTAAAAATGGCAA+GGG + Chr4:5058232-5058251 None:intergenic 15.0%
!! AACTTTATTCAAAAGAAAAA+AGG - Chr4:5058763-5058782 MsG0480018452.01.T01:intron 15.0%
!! ACTTCTATAAAAATTTATGT+AGG - Chr4:5059713-5059732 MsG0480018452.01.T01:intron 15.0%
!! GATTATAATCAAGTTTATTA+AGG + Chr4:5058725-5058744 None:intergenic 15.0%
!! GCAAAAAGAAATAATAATAT+AGG - Chr4:5058812-5058831 MsG0480018452.01.T01:intron 15.0%
!!! AATTGTGTTTTTTTATGTAT+AGG - Chr4:5057186-5057205 MsG0480018452.01.T01:intron 15.0%
!!! ATTGTGTTTTTTTATGTATA+GGG - Chr4:5057187-5057206 MsG0480018452.01.T01:intron 15.0%
!!! ATTTTTTTAGTAATGATAGA+AGG + Chr4:5059402-5059421 None:intergenic 15.0%
!!! CTATCAATACTTTTATTTAT+TGG + Chr4:5058149-5058168 None:intergenic 15.0%
!!! CTATTTACATACATATTTTT+TGG - Chr4:5059494-5059513 MsG0480018452.01.T01:intron 15.0%
!!! GAACAAAAGTATTAATTTAA+GGG + Chr4:5059169-5059188 None:intergenic 15.0%
!!! TGAACAAAAGTATTAATTTA+AGG + Chr4:5059170-5059189 None:intergenic 15.0%
!!! TTTTATAATACTGAAAAAAG+AGG + Chr4:5058276-5058295 None:intergenic 15.0%
!! AAACTACTATAGATTTAAAG+TGG - Chr4:5060214-5060233 MsG0480018452.01.T01:CDS 20.0%
!! AATTTATTAAAAATGGCAAG+GGG + Chr4:5058231-5058250 None:intergenic 20.0%
!! ACTAACTACTTTAGTATTAA+GGG + Chr4:5058103-5058122 None:intergenic 20.0%
!! ATGGAAACATCAAAATAAAA+GGG - Chr4:5059914-5059933 MsG0480018452.01.T01:intron 20.0%
!! ATTTATAGTATACAGTTTGA+AGG + Chr4:5057309-5057328 None:intergenic 20.0%
!! CTTAATTATATGTCATTAAG+AGG + Chr4:5058651-5058670 None:intergenic 20.0%
!! TGCTTTATATATGTTAGTTA+AGG - Chr4:5058445-5058464 MsG0480018452.01.T01:intron 20.0%
!! TTATTGTTATACATTCTACT+TGG + Chr4:5058564-5058583 None:intergenic 20.0%
!! TTTGTGATGTTAAAAAAAAC+AGG - Chr4:5060288-5060307 MsG0480018452.01.T01:CDS 20.0%
!!! AGTTTTAAGAAAGAGATTTT+GGG + Chr4:5057286-5057305 None:intergenic 20.0%
!!! CATCTTAGTCTTATTATATA+TGG - Chr4:5057078-5057097 MsG0480018452.01.T01:intron 20.0%
!!! GTGAAAATCAAATTCTTTTT+TGG - Chr4:5059739-5059758 MsG0480018452.01.T01:intron 20.0%
!!! TAATTAAAATTTGTTGACAG+AGG - Chr4:5059191-5059210 MsG0480018452.01.T01:intron 20.0%
!!! TAGTGTTTGAAATTAAACTA+AGG - Chr4:5058840-5058859 MsG0480018452.01.T01:intron 20.0%
!!! TCTAAAATTTTGGTGTTTTA+AGG - Chr4:5060062-5060081 MsG0480018452.01.T01:intron 20.0%
!!! TTAGTAGTTATATTAGCTTT+CGG - Chr4:5057253-5057272 MsG0480018452.01.T01:intron 20.0%
! AAACTCAATTAACATGGTAT+AGG + Chr4:5057778-5057797 None:intergenic 25.0%
! AAATAGAATGAGCTAAGAAA+TGG + Chr4:5059323-5059342 None:intergenic 25.0%
! AAATGTTAAAATGTGCTCTT+AGG - Chr4:5058864-5058883 MsG0480018452.01.T01:intron 25.0%
! AATAATCGCAACTATAATGA+TGG + Chr4:5057393-5057412 None:intergenic 25.0%
! AATAGAATGAGCTAAGAAAT+GGG + Chr4:5059322-5059341 None:intergenic 25.0%
! AATGTTAAAATGTGCTCTTA+GGG - Chr4:5058865-5058884 MsG0480018452.01.T01:intron 25.0%
! AGATATTATAGTGCAACATA+AGG - Chr4:5058482-5058501 MsG0480018452.01.T01:intron 25.0%
! ATATGGAGAAATAAGATGTT+CGG + Chr4:5058991-5059010 None:intergenic 25.0%
! ATCCACTTTAATGGTAAAAT+TGG + Chr4:5059473-5059492 None:intergenic 25.0%
! CACTAACTACTTTAGTATTA+AGG + Chr4:5058104-5058123 None:intergenic 25.0%
! GAAAAAGTTCCTATATTTCA+TGG + Chr4:5059972-5059991 None:intergenic 25.0%
! GATATGCATGCAAATATTTA+GGG - Chr4:5057126-5057145 MsG0480018452.01.T01:intron 25.0%
! GATGGAAACATCAAAATAAA+AGG - Chr4:5059913-5059932 MsG0480018452.01.T01:intron 25.0%
! GGTTCAACATATTATAAAGA+GGG + Chr4:5059822-5059841 None:intergenic 25.0%
! GTTCAACATATTATAAAGAG+GGG + Chr4:5059821-5059840 None:intergenic 25.0%
! GTTGAAAACATTATGTGTTA+AGG - Chr4:5059626-5059645 MsG0480018452.01.T01:intron 25.0%
! TAAATTCTAGTATAGATGCA+AGG - Chr4:5057324-5057343 MsG0480018452.01.T01:intron 25.0%
! TATACCATGTTAATTGAGTT+TGG - Chr4:5057777-5057796 MsG0480018452.01.T01:intron 25.0%
! TGATATGCATGCAAATATTT+AGG - Chr4:5057125-5057144 MsG0480018452.01.T01:intron 25.0%
! TGGAAACATCAAAATAAAAG+GGG - Chr4:5059915-5059934 MsG0480018452.01.T01:intron 25.0%
! TTATAAAGGTCCTAGAAAAA+GGG - Chr4:5058526-5058545 MsG0480018452.01.T01:intron 25.0%
! TTCAAAAGAAAAAAGGAAGA+TGG - Chr4:5058770-5058789 MsG0480018452.01.T01:intron 25.0%
! TTCAACATATTATAAAGAGG+GGG + Chr4:5059820-5059839 None:intergenic 25.0%
! TTCTTGTTGAAGAGATATAT+AGG - Chr4:5057215-5057234 MsG0480018452.01.T01:intron 25.0%
! TTTATAAAGGTCCTAGAAAA+AGG - Chr4:5058525-5058544 MsG0480018452.01.T01:intron 25.0%
!! AAGCTCACACATTTTAAATA+TGG + Chr4:5059008-5059027 None:intergenic 25.0%
!! AATTTTATGTACACACACAT+TGG - Chr4:5059769-5059788 MsG0480018452.01.T01:intron 25.0%
!! CGTTTAGAATATCAAAGAAA+TGG + Chr4:5058352-5058371 None:intergenic 25.0%
!! TACTATAGATTTAAAGTGGA+GGG - Chr4:5060218-5060237 MsG0480018452.01.T01:CDS 25.0%
!! TCATTCTTTGTGATAGTTTT+TGG + Chr4:5057629-5057648 None:intergenic 25.0%
!!! AATCTCTTTAAAGATCCTTT+TGG + Chr4:5060383-5060402 None:intergenic 25.0%
!!! ATTACTCTATTAGTCTTGAA+AGG + Chr4:5059523-5059542 None:intergenic 25.0%
!!! ATTGATCTTGATTTGCATAA+GGG - Chr4:5056968-5056987 MsG0480018452.01.T01:intron 25.0%
!!! GAGTTTTAAGAAAGAGATTT+TGG + Chr4:5057287-5057306 None:intergenic 25.0%
!!! TTTTTAAAAACGGGTTCTAA+TGG - Chr4:5058203-5058222 MsG0480018452.01.T01:intron 25.0%
!!! TTTTTTGTCAAGTTGTTTAG+TGG + Chr4:5059034-5059053 None:intergenic 25.0%
AAAGATTGCAATGACAGAAT+TGG + Chr4:5057749-5057768 None:intergenic 30.0%
AAAGCCATTATTGTGTTAGA+TGG - Chr4:5059895-5059914 MsG0480018452.01.T01:intron 30.0%
ACAATGCATAATATATGCAG+GGG - Chr4:5058951-5058970 MsG0480018452.01.T01:intron 30.0%
ACATTCTCCTCATTATTTGA+TGG - Chr4:5058588-5058607 MsG0480018452.01.T01:intron 30.0%
ACTTAGCTCACAAGTATTTA+TGG + Chr4:5059570-5059589 None:intergenic 30.0%
AGATCCAAACTCAATTAACA+TGG + Chr4:5057784-5057803 None:intergenic 30.0%
AGGTTCAAAAATGTACATGA+AGG - Chr4:5056913-5056932 MsG0480018452.01.T01:intron 30.0%
ATATGTTGAACCCATCAATT+AGG - Chr4:5059830-5059849 MsG0480018452.01.T01:intron 30.0%
ATATTGTTCTTGGATGTTCT+TGG + Chr4:5057868-5057887 None:intergenic 30.0%
ATGACATGTCCATGAAATAT+AGG - Chr4:5059960-5059979 MsG0480018452.01.T01:intron 30.0%
ATTGAGTCACATATTGTTCT+TGG + Chr4:5057878-5057897 None:intergenic 30.0%
ATTTCTCCTTCCTAATTGAT+GGG + Chr4:5059843-5059862 None:intergenic 30.0%
CATGCTAAAGACACATATTA+GGG + Chr4:5059145-5059164 None:intergenic 30.0%
GAAACATCAAAATAAAAGGG+GGG - Chr4:5059917-5059936 MsG0480018452.01.T01:intron 30.0%
GACAATGCATAATATATGCA+GGG - Chr4:5058950-5058969 MsG0480018452.01.T01:intron 30.0%
GGAAACATCAAAATAAAAGG+GGG - Chr4:5059916-5059935 MsG0480018452.01.T01:intron 30.0%
GGAGAAATAATCAAATGTCA+TGG - Chr4:5059855-5059874 MsG0480018452.01.T01:intron 30.0%
GGGTTCAACATATTATAAAG+AGG + Chr4:5059823-5059842 None:intergenic 30.0%
GTAAATAGCATCCACTTTAA+TGG + Chr4:5059482-5059501 None:intergenic 30.0%
GTGACTCAATATAACCTATA+TGG - Chr4:5057827-5057846 MsG0480018452.01.T01:CDS 30.0%
GTTTCCATCTAACACAATAA+TGG + Chr4:5059902-5059921 None:intergenic 30.0%
TAAACATGTGCACCATATAT+AGG - Chr4:5057934-5057953 MsG0480018452.01.T01:intron 30.0%
TATGGAGAAATAAGATGTTC+GGG + Chr4:5058990-5059009 None:intergenic 30.0%
TATTTCTCCTTCCTAATTGA+TGG + Chr4:5059844-5059863 None:intergenic 30.0%
TGTTTATTGAATCATGCAAG+AGG - Chr4:5060312-5060331 MsG0480018452.01.T01:CDS 30.0%
TTGCACTATAATATCTACCT+GGG + Chr4:5058478-5058497 None:intergenic 30.0%
TTTCATGGACATGTCATTAT+AGG + Chr4:5059957-5059976 None:intergenic 30.0%
! AAGAAATGGACTTGCTTAAA+AGG + Chr4:5058338-5058357 None:intergenic 30.0%
! AATCAAAGTTAGTACTGGAT+AGG + Chr4:5059595-5059614 None:intergenic 30.0%
! CACCAATTTTACCATTAAAG+TGG - Chr4:5059468-5059487 MsG0480018452.01.T01:intron 30.0%
! CTACTATAGATTTAAAGTGG+AGG - Chr4:5060217-5060236 MsG0480018452.01.T01:CDS 30.0%
! CTTTTATATGTGCACCATAT+AGG + Chr4:5057844-5057863 None:intergenic 30.0%
! TAACTTTGATTTCGTGCATA+TGG - Chr4:5059604-5059623 MsG0480018452.01.T01:intron 30.0%
! TAATGTGTCTCACATTGATT+GGG + Chr4:5057694-5057713 None:intergenic 30.0%
! TATGGTGCACATGTTTATTT+TGG + Chr4:5057931-5057950 None:intergenic 30.0%
!! GATTGATCTTGATTTGCATA+AGG - Chr4:5056967-5056986 MsG0480018452.01.T01:intron 30.0%
!! TTTTGGAAAGTCAAGATTGA+AGG + Chr4:5057914-5057933 None:intergenic 30.0%
!!! CACCAAAATTTTAGAACGTA+TGG + Chr4:5060057-5060076 None:intergenic 30.0%
!!! CTCCATACGTTCTAAAATTT+TGG - Chr4:5060052-5060071 MsG0480018452.01.T01:intron 30.0%
AATGTACATGAAGGTTAGCA+TGG - Chr4:5056922-5056941 MsG0480018452.01.T01:intron 35.0%
ACCATCTTTGTCCTCATAAA+TGG + Chr4:5059253-5059272 None:intergenic 35.0%
AGATCAATCTTACGCAAGTA+AGG + Chr4:5056956-5056975 None:intergenic 35.0%
ATGAAGAGATCAGATGCAAA+GGG - Chr4:5060344-5060363 MsG0480018452.01.T01:CDS 35.0%
ATGGAGAAATAAGATGTTCG+GGG + Chr4:5058989-5059008 None:intergenic 35.0%
CACAAAAGAATGAGAAGAAG+AGG - Chr4:5056765-5056784 MsG0480018452.01.T01:CDS 35.0%
CACGAAATCAAAGTTAGTAC+TGG + Chr4:5059600-5059619 None:intergenic 35.0%
CCATCTTTGTCCTCATAAAT+GGG + Chr4:5059252-5059271 None:intergenic 35.0%
CCATGCTAAAGACACATATT+AGG + Chr4:5059146-5059165 None:intergenic 35.0%
CCTAATATGTGTCTTTAGCA+TGG - Chr4:5059143-5059162 MsG0480018452.01.T01:intron 35.0%
CTGCCAGTTAAACCTATATA+TGG + Chr4:5057949-5057968 None:intergenic 35.0%
CTTCATTCATGTTCTTCTTC+CGG + Chr4:5056895-5056914 None:intergenic 35.0%
GCACCATATATAGGTTTAAC+TGG - Chr4:5057943-5057962 MsG0480018452.01.T01:intron 35.0%
GGACAATGCATAATATATGC+AGG - Chr4:5058949-5058968 MsG0480018452.01.T01:intron 35.0%
GTAATGTGTCTCACATTGAT+TGG + Chr4:5057695-5057714 None:intergenic 35.0%
GTTGCACTATAATATCTACC+TGG + Chr4:5058479-5058498 None:intergenic 35.0%
TATGAAGAGATCAGATGCAA+AGG - Chr4:5060343-5060362 MsG0480018452.01.T01:CDS 35.0%
TCCTAGAAAAAGGGTAAAGT+GGG - Chr4:5058535-5058554 MsG0480018452.01.T01:intron 35.0%
TTCTCCTCATTATTTGATGG+TGG - Chr4:5058591-5058610 MsG0480018452.01.T01:intron 35.0%
! ATGGACTTGCTTAAAAGGTT+CGG + Chr4:5058333-5058352 None:intergenic 35.0%
! ATTTCTTTTTGCCCTTCTGT+GGG + Chr4:5058804-5058823 None:intergenic 35.0%
! CTCTTCTTCTCATTCTTTTG+TGG + Chr4:5056767-5056786 None:intergenic 35.0%
! GAGAAGAAGAATCAAGTTGT+GGG - Chr4:5056848-5056867 MsG0480018452.01.T01:intron 35.0%
! TATTTCTTTTTGCCCTTCTG+TGG + Chr4:5058805-5058824 None:intergenic 35.0%
! TGATTTGCATAAGGGATACT+TGG - Chr4:5056976-5056995 MsG0480018452.01.T01:intron 35.0%
!! TTAGTTAAGGTATTGATCCC+AGG - Chr4:5058458-5058477 MsG0480018452.01.T01:intron 35.0%
!!! AGCATCATATCCTGTTTTTG+AGG + Chr4:5058429-5058448 None:intergenic 35.0%
ACTCGACAAACCTCAAAAAC+AGG - Chr4:5058416-5058435 MsG0480018452.01.T01:intron 40.0%
AGGTTTAACTGGCAGTATAG+TGG - Chr4:5057954-5057973 MsG0480018452.01.T01:intron 40.0%
ATTCAGTGACCTAAGTGTGA+GGG + Chr4:5057726-5057745 None:intergenic 40.0%
CCCATTTATGAGGACAAAGA+TGG - Chr4:5059249-5059268 MsG0480018452.01.T01:intron 40.0%
CGGAAGAAGAACATGAATGA+AGG - Chr4:5056893-5056912 MsG0480018452.01.T01:intron 40.0%
CTCTTTGGTTGTTGTGGAAT+TGG - Chr4:5057022-5057041 MsG0480018452.01.T01:intron 40.0%
GAAATAACCGAGCTAAGGTT+GGG - Chr4:5056725-5056744 MsG0480018452.01.T01:CDS 40.0%
GACTTGAAATAACCGAGCTA+AGG - Chr4:5056720-5056739 MsG0480018452.01.T01:CDS 40.0%
GTCCTAGAAAAAGGGTAAAG+TGG - Chr4:5058534-5058553 MsG0480018452.01.T01:intron 40.0%
GTTGAACCCATCAATTAGGA+AGG - Chr4:5059834-5059853 MsG0480018452.01.T01:intron 40.0%
TACATGAAGGTTAGCATGGA+TGG - Chr4:5056926-5056945 MsG0480018452.01.T01:intron 40.0%
TGAAATAACCGAGCTAAGGT+TGG - Chr4:5056724-5056743 MsG0480018452.01.T01:CDS 40.0%
TGAACACGTTCCCATTTATG+AGG - Chr4:5059239-5059258 MsG0480018452.01.T01:intron 40.0%
TGAGCTTAACTCAGTTGCTA+GGG - Chr4:5058928-5058947 MsG0480018452.01.T01:intron 40.0%
TGCATAATATATGCAGGGGT+CGG - Chr4:5058955-5058974 MsG0480018452.01.T01:intron 40.0%
TGCTTGTGCGTTCAAATTCA+TGG - Chr4:5057440-5057459 MsG0480018452.01.T01:intron 40.0%
! AGAAGAATCAAGTTGTGGGA+TGG - Chr4:5056852-5056871 MsG0480018452.01.T01:intron 40.0%
! AGATCAGATGCAAAGGGTTT+TGG - Chr4:5060350-5060369 MsG0480018452.01.T01:CDS 40.0%
! CGAGAAGAAGAATCAAGTTG+TGG - Chr4:5056847-5056866 MsG0480018452.01.T01:intron 40.0%
! TCCCACTTTACCCTTTTTCT+AGG + Chr4:5058539-5058558 None:intergenic 40.0%
! TTTCTTTTTGCCCTTCTGTG+GGG + Chr4:5058803-5058822 None:intergenic 40.0%
!! TAATGGCTTTGCCTTTTCCA+TGG + Chr4:5059885-5059904 None:intergenic 40.0%
!!! GGTTTTGGTTTGCAACCAAA+AGG - Chr4:5060365-5060384 MsG0480018452.01.T01:CDS 40.0%
AGGATGTTCTCCGAGATTGA+CGG - Chr4:5056785-5056804 MsG0480018452.01.T01:intron 45.0%
ATGAGGACAAAGATGGTGAC+TGG - Chr4:5059256-5059275 MsG0480018452.01.T01:intron 45.0%
CAATATCCACCCTCACACTT+AGG - Chr4:5057714-5057733 MsG0480018452.01.T01:intron 45.0%
CACGCCACCATCAAATAATG+AGG + Chr4:5058598-5058617 None:intergenic 45.0%
GAGAAGCTCTTTGGTTGTTG+TGG - Chr4:5057016-5057035 MsG0480018452.01.T01:intron 45.0%
GATTCAGTGACCTAAGTGTG+AGG + Chr4:5057727-5057746 None:intergenic 45.0%
GTGAGCTTAACTCAGTTGCT+AGG - Chr4:5058927-5058946 MsG0480018452.01.T01:intron 45.0%
TCAAATGTCATGGCCTACCA+TGG - Chr4:5059865-5059884 MsG0480018452.01.T01:intron 45.0%
TTGAATCATGCAAGAGGCTG+AGG - Chr4:5060318-5060337 MsG0480018452.01.T01:CDS 45.0%
! CTTCTCGATTTTCTCGTCAC+CGG + Chr4:5056834-5056853 None:intergenic 45.0%
! GGGATACTTGGAGTTAGCTT+TGG - Chr4:5056988-5057007 MsG0480018452.01.T01:intron 45.0%
! TCACGCATGTCGGTTACTTA+GGG + Chr4:5059796-5059815 None:intergenic 45.0%
! TTCACGCATGTCGGTTACTT+AGG + Chr4:5059797-5059816 None:intergenic 45.0%
! TTCTTTTGTGGCTCACCACA+TGG + Chr4:5056755-5056774 None:intergenic 45.0%
!! CTTGGAGTTAGCTTTGGCTT+TGG - Chr4:5056994-5057013 MsG0480018452.01.T01:intron 45.0%
!! TTGGCTTTGGAGAAGCTCTT+TGG - Chr4:5057007-5057026 MsG0480018452.01.T01:intron 45.0%
ATGGAACCAAACCCCACAGA+AGG - Chr4:5058789-5058808 MsG0480018452.01.T01:intron 50.0%
ATGTTCTCCGAGATTGACGG+TGG - Chr4:5056788-5056807 MsG0480018452.01.T01:intron 50.0%
CAAAGATGGTGACTGGATGC+TGG - Chr4:5059263-5059282 MsG0480018452.01.T01:intron 50.0%
CCAGAAGGACTTACTCCCAA+GGG + Chr4:5059299-5059318 None:intergenic 50.0%
CTAAGGTTGGGTTTGCCATG+TGG - Chr4:5056737-5056756 MsG0480018452.01.T01:CDS 50.0%
GAGCTAAGAAATGGGCCAGA+AGG + Chr4:5059314-5059333 None:intergenic 50.0%
GGGGAAGAAAATGGAGGTTC+CGG - Chr4:5056812-5056831 MsG0480018452.01.T01:intron 50.0%
GTCATGGCCTACCATGGAAA+AGG - Chr4:5059871-5059890 MsG0480018452.01.T01:intron 50.0%
TGGAACCAAACCCCACAGAA+GGG - Chr4:5058790-5058809 MsG0480018452.01.T01:intron 50.0%
TGGCAAACCCAACCTTAGCT+CGG + Chr4:5056735-5056754 None:intergenic 50.0%
TTCTTCCGGTACGAACACAC+CGG + Chr4:5056881-5056900 None:intergenic 50.0%
! GGCTTTGCCTTTTCCATGGT+AGG + Chr4:5059881-5059900 None:intergenic 50.0%
! TTTTGCCCTTCTGTGGGGTT+TGG + Chr4:5058798-5058817 None:intergenic 50.0%
!! GTTGACAGAGGAAGCGTTGA+AGG - Chr4:5059203-5059222 MsG0480018452.01.T01:intron 50.0%
AAGAGGGGGTTCACGCATGT+CGG + Chr4:5059806-5059825 None:intergenic 55.0%
CAGTGACCTAAGTGTGAGGG+TGG + Chr4:5057723-5057742 None:intergenic 55.0%
CCCTTGGGAGTAAGTCCTTC+TGG - Chr4:5059296-5059315 MsG0480018452.01.T01:intron 55.0%
GATGGTGACTGGATGCTGGT+TGG - Chr4:5059267-5059286 MsG0480018452.01.T01:intron 55.0%
GCCAGAAGGACTTACTCCCA+AGG + Chr4:5059300-5059319 None:intergenic 55.0%
GCTGGTTGGAGATGTCCCTT+GGG - Chr4:5059281-5059300 MsG0480018452.01.T01:intron 55.0%
TCTCCGAGATTGACGGTGGT+GGG - Chr4:5056792-5056811 MsG0480018452.01.T01:intron 55.0%
TTCCCCACCACCGTCAATCT+CGG + Chr4:5056798-5056817 None:intergenic 55.0%
TTCTCCGAGATTGACGGTGG+TGG - Chr4:5056791-5056810 MsG0480018452.01.T01:intron 55.0%
! TCAAGTTGTGGGATGGCCTC+CGG - Chr4:5056859-5056878 MsG0480018452.01.T01:intron 55.0%
! TGCTGGTTGGAGATGTCCCT+TGG - Chr4:5059280-5059299 MsG0480018452.01.T01:intron 55.0%
!! GACGGTGGTGGGGAAGAAAA+TGG - Chr4:5056803-5056822 MsG0480018452.01.T01:intron 55.0%
!! GGTGGTGGGGAAGAAAATGG+AGG - Chr4:5056806-5056825 MsG0480018452.01.T01:intron 55.0%
CTCCGAGATTGACGGTGGTG+GGG - Chr4:5056793-5056812 MsG0480018452.01.T01:intron 60.0%
TTCCGGTACGAACACACCGG+AGG + Chr4:5056878-5056897 None:intergenic 60.0%
GGCCTCCGGTGTGTTCGTAC+CGG - Chr4:5056873-5056892 MsG0480018452.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 5056701 5060409 5056701 ID=MsG0480018452.01;Name=MsG0480018452.01
Chr4 mRNA 5056701 5060409 5056701 ID=MsG0480018452.01.T01;Parent=MsG0480018452.01;Name=MsG0480018452.01.T01;_AED=0.43;_eAED=0.44;_QI=0|0|0|1|1|1|3|0|178
Chr4 exon 5060067 5060409 5060067 ID=MsG0480018452.01.T01:exon:1809;Parent=MsG0480018452.01.T01
Chr4 exon 5057806 5057899 5057806 ID=MsG0480018452.01.T01:exon:1808;Parent=MsG0480018452.01.T01
Chr4 exon 5056701 5056800 5056701 ID=MsG0480018452.01.T01:exon:1807;Parent=MsG0480018452.01.T01
Chr4 CDS 5060067 5060409 5060067 ID=MsG0480018452.01.T01:cds;Parent=MsG0480018452.01.T01
Chr4 CDS 5057806 5057899 5057806 ID=MsG0480018452.01.T01:cds;Parent=MsG0480018452.01.T01
Chr4 CDS 5056701 5056800 5056701 ID=MsG0480018452.01.T01:cds;Parent=MsG0480018452.01.T01
Gene Sequence

>MsG0480018452.01.T01

ATGGCAAGAGAAGGTTTTGGACTTGAAATAACCGAGCTAAGGTTGGGTTTGCCATGTGGTGAGCCACAAAAGAATGAGAAGAAGAGGATGTTCTCCGAGATTGACGGTGGTGGGGAAGAAAATGGAGGTTCCGGTGACGAGAAAATCGAGAAGAAGAATCAAGTTGTGGGATGGCCTCCGGTGTGTTCGTACCGGAAGAAGAACATGAATGAAGGTTCAAAAATGTACATGAAGGTTAGCATGGATGGAGCTCCTTACTTGCGTAAGATTGATCTTGATTTGCATAAGGGATACTTGGAGTTAGCTTTGGCTTTGGAGAAGCTCTTTGGTTGTTGTGGAATTGAGGAAGCGTTGAAGGATGCAGACAATTGTGAACACGTTCCCATTTATGAGGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTCCCTTGGGAGATGTTTATTGAATCATGCAAGAGGCTGAGGATTATGAAGAGATCAGATGCAAAGGGTTTTGGTTTGCAACCAAAAGGATCTTTAAAGAGATTCATATAG
Protein sequence

>MsG0480018452.01.T01

MAREGFGLEITELRLGLPCGEPQKNEKKRMFSEIDGGGEENGGSGDEKIEKKNQVVGWPPVCSYRKKNMNEGSKMYMKVSMDGAPYLRKIDLDLHKGYLELALALEKLFGCCGIEEALKDADNCEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFGLQPKGSLKRFI*