Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019152.01.T01 | AES82241.1 | 68.687 | 198 | 62 | 0 | 38 | 235 | 242 | 439 | 5.62E-100 | 310 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019152.01.T01 | G7KTR1 | 68.687 | 198 | 62 | 0 | 38 | 235 | 242 | 439 | 2.68e-100 | 310 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0480019152.01 | MsG0680033379.01 | 0.800005 | 1.765456e-48 | 8.130487e-46 |
| MsG0280007596.01 | MsG0480019152.01 | 0.800298 | 1.538851e-48 | 7.140244e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019152.01.T01 | MTR_7g110100 | 68.687 | 198 | 62 | 0 | 38 | 235 | 242 | 439 | 6.80e-104 | 310 |
| MsG0480019152.01.T01 | MTR_4g032565 | 67.403 | 181 | 59 | 0 | 53 | 233 | 1 | 181 | 3.48e-93 | 275 |
| MsG0480019152.01.T01 | MTR_4g032585 | 66.851 | 181 | 60 | 0 | 53 | 233 | 1 | 181 | 2.11e-92 | 273 |
| MsG0480019152.01.T01 | MTR_3g046650 | 70.312 | 192 | 24 | 1 | 5 | 196 | 44 | 202 | 2.55e-90 | 266 |
| MsG0480019152.01.T01 | MTR_1g105785 | 59.898 | 197 | 77 | 1 | 38 | 234 | 242 | 436 | 4.97e-88 | 271 |
| MsG0480019152.01.T01 | MTR_7g051400 | 58.376 | 197 | 80 | 1 | 38 | 234 | 220 | 414 | 1.58e-85 | 264 |
| MsG0480019152.01.T01 | MTR_1g492690 | 38.919 | 185 | 102 | 2 | 50 | 234 | 57 | 230 | 2.24e-46 | 158 |
| MsG0480019152.01.T01 | MTR_3g452170 | 66.327 | 98 | 33 | 0 | 38 | 135 | 242 | 339 | 8.09e-46 | 158 |
| MsG0480019152.01.T01 | MTR_8g064300 | 65.686 | 102 | 35 | 0 | 131 | 232 | 120 | 221 | 1.04e-40 | 142 |
| MsG0480019152.01.T01 | MTR_5g093790 | 65.657 | 99 | 34 | 0 | 134 | 232 | 197 | 295 | 6.39e-38 | 136 |
| MsG0480019152.01.T01 | MTR_0048s0080 | 39.785 | 186 | 96 | 5 | 38 | 222 | 108 | 278 | 2.37e-37 | 134 |
| MsG0480019152.01.T01 | MTR_3g108500 | 66.279 | 86 | 24 | 1 | 133 | 218 | 20 | 100 | 2.96e-33 | 121 |
| MsG0480019152.01.T01 | MTR_3g068135 | 36.842 | 133 | 75 | 1 | 6 | 138 | 6 | 129 | 5.20e-31 | 114 |
| MsG0480019152.01.T01 | MTR_1g115520 | 37.255 | 153 | 62 | 2 | 82 | 234 | 4 | 122 | 5.94e-31 | 112 |
| MsG0480019152.01.T01 | MTR_4g060433 | 41.667 | 108 | 63 | 0 | 60 | 167 | 8 | 115 | 5.59e-28 | 105 |
| MsG0480019152.01.T01 | MTR_8g104590 | 42.574 | 101 | 55 | 1 | 68 | 168 | 5 | 102 | 5.82e-27 | 102 |
| MsG0480019152.01.T01 | MTR_5g057125 | 29.787 | 188 | 113 | 2 | 38 | 225 | 39 | 207 | 1.64e-24 | 99.0 |
| MsG0480019152.01.T01 | MTR_2g048560 | 28.421 | 190 | 134 | 2 | 43 | 230 | 246 | 435 | 1.80e-21 | 92.8 |
| MsG0480019152.01.T01 | MTR_5g078250 | 32.402 | 179 | 115 | 6 | 50 | 225 | 252 | 427 | 3.40e-19 | 86.3 |
| MsG0480019152.01.T01 | MTR_2g040680 | 57.377 | 61 | 26 | 0 | 173 | 233 | 115 | 175 | 4.44e-19 | 83.6 |
| MsG0480019152.01.T01 | MTR_4g014890 | 25.962 | 208 | 145 | 4 | 22 | 225 | 254 | 456 | 4.45e-16 | 77.0 |
| MsG0480019152.01.T01 | MTR_2g048550 | 30.405 | 148 | 101 | 2 | 86 | 232 | 290 | 436 | 1.15e-15 | 75.9 |
| MsG0480019152.01.T01 | MTR_6g059860 | 26.214 | 206 | 144 | 4 | 22 | 225 | 248 | 447 | 1.45e-15 | 75.9 |
| MsG0480019152.01.T01 | MTR_6g445520 | 27.225 | 191 | 133 | 5 | 41 | 228 | 110 | 297 | 1.64e-15 | 75.5 |
| MsG0480019152.01.T01 | MTR_3g055660 | 25.481 | 208 | 146 | 4 | 22 | 225 | 254 | 456 | 5.29e-15 | 73.9 |
| MsG0480019152.01.T01 | MTR_4g036240 | 27.219 | 169 | 119 | 3 | 60 | 227 | 120 | 285 | 1.90e-14 | 72.0 |
| MsG0480019152.01.T01 | MTR_4g036240 | 27.219 | 169 | 119 | 3 | 60 | 227 | 183 | 348 | 2.04e-14 | 72.4 |
| MsG0480019152.01.T01 | MTR_4g036240 | 27.219 | 169 | 119 | 3 | 60 | 227 | 263 | 428 | 2.46e-14 | 72.0 |
| MsG0480019152.01.T01 | MTR_3g056270 | 27.219 | 169 | 119 | 3 | 60 | 227 | 422 | 587 | 4.70e-14 | 71.2 |
| MsG0480019152.01.T01 | MTR_1g062890 | 30.435 | 161 | 105 | 4 | 28 | 181 | 177 | 337 | 4.86e-13 | 68.2 |
| MsG0480019152.01.T01 | MTR_4g040040 | 26.573 | 143 | 103 | 2 | 84 | 225 | 1 | 142 | 1.14e-11 | 61.6 |
| MsG0480019152.01.T01 | MTR_4g085760 | 25.926 | 162 | 116 | 3 | 44 | 201 | 256 | 417 | 3.52e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019152.01.T01 | AT2G05642 | 28.188 | 149 | 97 | 2 | 87 | 225 | 271 | 419 | 6.21e-16 | 76.6 |
| MsG0480019152.01.T01 | AT1G36510 | 24.336 | 226 | 154 | 6 | 1 | 225 | 79 | 288 | 2.71e-14 | 71.6 |
Find 52 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAAAACAGATGTTGTTTA+AGG | 0.194362 | 4:-15135357 | MsG0480019152.01.T01:CDS |
| CCGTCGTGTAAATAGATTTA+AGG | 0.219222 | 4:-15135654 | MsG0480019152.01.T01:intron |
| ATGAAAGATAAGGATGTTAA+TGG | 0.285064 | 4:-15136571 | MsG0480019152.01.T01:CDS |
| CTCATAATACCAGCCATATT+CGG | 0.371777 | 4:+15135837 | None:intergenic |
| TGTGATATTGAGGCCGAATA+TGG | 0.384071 | 4:-15135850 | MsG0480019152.01.T01:CDS |
| TCTTGAAAGGCTTGAGGGTG+TGG | 0.384656 | 4:-15136112 | MsG0480019152.01.T01:intron |
| ATCTGATCTCGAGATCTTCC+TGG | 0.394078 | 4:-15135378 | MsG0480019152.01.T01:CDS |
| ACAAATTGCTTAATCAAATC+AGG | 0.403679 | 4:+15135266 | None:intergenic |
| TGTGGATGTTACAGTATCTC+AGG | 0.408106 | 4:-15136094 | MsG0480019152.01.T01:CDS |
| ATTCTTCTTGAAAGGCTTGA+GGG | 0.423797 | 4:-15136117 | MsG0480019152.01.T01:intron |
| TTTGGACATTCCGATCAAAC+AGG | 0.438306 | 4:+15135588 | None:intergenic |
| GTGGAAGGTGCAATCAATCT+AGG | 0.443721 | 4:-15135762 | MsG0480019152.01.T01:CDS |
| ATGGCAACATTAAACACAAC+TGG | 0.458436 | 4:-15135322 | MsG0480019152.01.T01:CDS |
| TGAAAGATAAGGATGTTAAT+GGG | 0.463063 | 4:-15136570 | MsG0480019152.01.T01:CDS |
| TATTCTTCTTGAAAGGCTTG+AGG | 0.472364 | 4:-15136118 | MsG0480019152.01.T01:intron |
| CAATTTATATTTACCTGTGG+TGG | 0.486459 | 4:+15135527 | None:intergenic |
| GGAAGGGTCAAAGTTGTTGC+CGG | 0.488979 | 4:-15135796 | MsG0480019152.01.T01:CDS |
| TCAGTTTCATCCTGTTTGAT+CGG | 0.491817 | 4:-15135598 | MsG0480019152.01.T01:CDS |
| TTTGACCCTTCCAGCACACT+TGG | 0.499191 | 4:+15135807 | None:intergenic |
| TGTTGCTTTACACAAAATCA+AGG | 0.500590 | 4:-15135246 | MsG0480019152.01.T01:CDS |
| TCAAGTAAGTGGTACACTAA+TGG | 0.502037 | 4:-15136064 | MsG0480019152.01.T01:CDS |
| CGAATATGGCTGGTATTATG+AGG | 0.502975 | 4:-15135836 | MsG0480019152.01.T01:CDS |
| GAAGGATGATATGAAAGATA+AGG | 0.508948 | 4:-15136581 | MsG0480019152.01.T01:CDS |
| TAAGGTGCATGTTCAAGTAA+TGG | 0.523065 | 4:-15135636 | MsG0480019152.01.T01:CDS |
| GTTCAAGTAATGGATGCAAC+GGG | 0.526363 | 4:-15135626 | MsG0480019152.01.T01:CDS |
| TTTAAGGTTGAGATAACTGA+TGG | 0.528793 | 4:-15135341 | MsG0480019152.01.T01:CDS |
| AATCTAGGAATGCAGTTCCC+AGG | 0.540458 | 4:-15135747 | MsG0480019152.01.T01:intron |
| TGACATCACACTAGAAGACT+TGG | 0.540536 | 4:-15136530 | MsG0480019152.01.T01:CDS |
| GTTGATCGATGCTCCACCAC+AGG | 0.540909 | 4:-15135540 | MsG0480019152.01.T01:intron |
| AGGAAGATCTCGAGATCAGA+TGG | 0.553072 | 4:+15135380 | None:intergenic |
| TTGAATCATATCATCAGCCA+TGG | 0.558099 | 4:+15136038 | None:intergenic |
| ATGTACCAAGTGTGCTGGAA+GGG | 0.559595 | 4:-15135812 | MsG0480019152.01.T01:CDS |
| GAGGCATGTACCAAGTGTGC+TGG | 0.562076 | 4:-15135817 | MsG0480019152.01.T01:CDS |
| GCAGTCATGTGTAGCGGTTG+TGG | 0.564150 | 4:-15135884 | MsG0480019152.01.T01:intron |
| TGTTCAAGTAATGGATGCAA+CGG | 0.575412 | 4:-15135627 | MsG0480019152.01.T01:CDS |
| TCTGATCTCGAGATCTTCCT+GGG | 0.575699 | 4:-15135377 | MsG0480019152.01.T01:CDS |
| CATTGGACATGTCGTCGAGA+AGG | 0.579501 | 4:-15136599 | MsG0480019152.01.T01:CDS |
| ATCAAACAGGATGAAACTGA+TGG | 0.580780 | 4:+15135601 | None:intergenic |
| CCGGTAGGATGTTCTGTGGA+AGG | 0.589642 | 4:-15135777 | MsG0480019152.01.T01:CDS |
| CATGTACCAAGTGTGCTGGA+AGG | 0.594849 | 4:-15135813 | MsG0480019152.01.T01:CDS |
| GTGGATGTTACAGTATCTCA+GGG | 0.605328 | 4:-15136093 | MsG0480019152.01.T01:CDS |
| TGTCAGAATAATAATAATAG+CGG | 0.609667 | 4:-15135407 | MsG0480019152.01.T01:intron |
| TGCAACAATCTGTGATATTG+AGG | 0.612087 | 4:-15135860 | MsG0480019152.01.T01:CDS |
| ATATTGAGGCCGAATATGGC+TGG | 0.613123 | 4:-15135846 | MsG0480019152.01.T01:CDS |
| CAGGGTGTGAGTCAAGTAAG+TGG | 0.620687 | 4:-15136075 | MsG0480019152.01.T01:CDS |
| CCTTCCACAGAACATCCTAC+CGG | 0.640857 | 4:+15135777 | None:intergenic |
| TGGTACACTAATGGTGCCCA+TGG | 0.646218 | 4:-15136055 | MsG0480019152.01.T01:CDS |
| TGAATCATATCATCAGCCAT+GGG | 0.651043 | 4:+15136039 | None:intergenic |
| AAGATAAGGATGTTAATGGG+AGG | 0.676471 | 4:-15136567 | MsG0480019152.01.T01:CDS |
| GGGTCAAAGTTGTTGCCGGT+AGG | 0.676995 | 4:-15135792 | MsG0480019152.01.T01:CDS |
| GTTGCCGGTAGGATGTTCTG+TGG | 0.702840 | 4:-15135781 | MsG0480019152.01.T01:CDS |
| TGTATTGCAGTCATGTGTAG+CGG | 0.749706 | 4:-15135890 | MsG0480019152.01.T01:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATTATATACTTTAATTATA+GGG | - | Chr4:15136026-15136045 | MsG0480019152.01.T01:CDS | 10.0% |
| !! | TCATTATATACTTTAATTAT+AGG | - | Chr4:15136025-15136044 | MsG0480019152.01.T01:CDS | 10.0% |
| !!! | TTTTTAATTATGTCTTATAT+GGG | - | Chr4:15135519-15135538 | MsG0480019152.01.T01:intron | 10.0% |
| !! | GCAAATTAAAAAAAATACTT+TGG | - | Chr4:15135670-15135689 | MsG0480019152.01.T01:intron | 15.0% |
| !!! | GTTTTTAATTATGTCTTATA+TGG | - | Chr4:15135518-15135537 | MsG0480019152.01.T01:intron | 15.0% |
| !! | ATTATAGGGAGATTTATAAT+TGG | - | Chr4:15136040-15136059 | MsG0480019152.01.T01:CDS | 20.0% |
| !! | TGTCAGAATAATAATAATAG+CGG | - | Chr4:15136562-15136581 | MsG0480019152.01.T01:CDS | 20.0% |
| !!! | ACATGTTATTTGTTTTAATG+AGG | - | Chr4:15135307-15135326 | MsG0480019152.01.T01:CDS | 20.0% |
| !!! | ATTTTTGTATTCTTCTTGAA+AGG | - | Chr4:15135844-15135863 | MsG0480019152.01.T01:CDS | 20.0% |
| ! | ACAAATTGCTTAATCAAATC+AGG | + | Chr4:15136706-15136725 | None:intergenic | 25.0% |
| ! | ACCACAGGTAAATATAAATT+GGG | - | Chr4:15136444-15136463 | MsG0480019152.01.T01:intron | 25.0% |
| ! | ATGAAAGATAAGGATGTTAA+TGG | - | Chr4:15135398-15135417 | MsG0480019152.01.T01:CDS | 25.0% |
| ! | TGAAAGATAAGGATGTTAAT+GGG | - | Chr4:15135399-15135418 | MsG0480019152.01.T01:CDS | 25.0% |
| ! | TTGATCCTGTTATAATAAGA+TGG | + | Chr4:15135791-15135810 | None:intergenic | 25.0% |
| ! | TTTCATTATGCAGAAATAAC+AGG | - | Chr4:15135550-15135569 | MsG0480019152.01.T01:CDS | 25.0% |
| !!! | GAGTATCAAATGCATTTTTT+GGG | - | Chr4:15135701-15135720 | MsG0480019152.01.T01:intron | 25.0% |
| !!! | GTGTATTTTGAAATGACTTA+CGG | - | Chr4:15135491-15135510 | MsG0480019152.01.T01:intron | 25.0% |
| !!! | TATGTGTTTTTAGACATCAT+TGG | - | Chr4:15135284-15135303 | MsG0480019152.01.T01:CDS | 25.0% |
| AAAAAAATACTTTGGCGTGA+TGG | - | Chr4:15135678-15135697 | MsG0480019152.01.T01:intron | 30.0% | |
| AAAAAATACTTTGGCGTGAT+GGG | - | Chr4:15135679-15135698 | MsG0480019152.01.T01:intron | 30.0% | |
| ACGATCCATCTTATTATAAC+AGG | - | Chr4:15135783-15135802 | MsG0480019152.01.T01:CDS | 30.0% | |
| CAATTTATATTTACCTGTGG+TGG | + | Chr4:15136445-15136464 | None:intergenic | 30.0% | |
| CACCACAGGTAAATATAAAT+TGG | - | Chr4:15136443-15136462 | MsG0480019152.01.T01:intron | 30.0% | |
| CCACAGGTAAATATAAATTG+GGG | - | Chr4:15136445-15136464 | MsG0480019152.01.T01:intron | 30.0% | |
| CCTTAAATCTATTTACACGA+CGG | + | Chr4:15136318-15136337 | None:intergenic | 30.0% | |
| GAAGGATGATATGAAAGATA+AGG | - | Chr4:15135388-15135407 | MsG0480019152.01.T01:CDS | 30.0% | |
| TAAGATGGATCGTTATTACT+TGG | + | Chr4:15135776-15135795 | None:intergenic | 30.0% | |
| ! | CACTTTTCCCAACAAAATTT+TGG | + | Chr4:15136402-15136421 | None:intergenic | 30.0% |
| ! | GGAATGTCCAAAATTTTGTT+GGG | - | Chr4:15136392-15136411 | MsG0480019152.01.T01:intron | 30.0% |
| ! | TGAGGAGCATATAATTGATA+CGG | - | Chr4:15135325-15135344 | MsG0480019152.01.T01:CDS | 30.0% |
| ! | TTTAAGGTTGAGATAACTGA+TGG | - | Chr4:15136628-15136647 | MsG0480019152.01.T01:intron | 30.0% |
| !! | ACGGTTCTGAATTATTGATA+CGG | - | Chr4:15135254-15135273 | MsG0480019152.01.T01:CDS | 30.0% |
| !! | TGTTGCTTTACACAAAATCA+AGG | - | Chr4:15136723-15136742 | MsG0480019152.01.T01:intron | 30.0% |
| !!! | GGAGTATCAAATGCATTTTT+TGG | - | Chr4:15135700-15135719 | MsG0480019152.01.T01:intron | 30.0% |
| AAGATAAGGATGTTAATGGG+AGG | - | Chr4:15135402-15135421 | MsG0480019152.01.T01:CDS | 35.0% | |
| AGTTGCAAGACAATCACAAT+TGG | + | Chr4:15135648-15135667 | None:intergenic | 35.0% | |
| ATAAATTGCGGTACTTACCT+GGG | + | Chr4:15136242-15136261 | None:intergenic | 35.0% | |
| ATCAAACAGGATGAAACTGA+TGG | + | Chr4:15136371-15136390 | None:intergenic | 35.0% | |
| ATGGCAACATTAAACACAAC+TGG | - | Chr4:15136647-15136666 | MsG0480019152.01.T01:intron | 35.0% | |
| ATTCTTCTTGAAAGGCTTGA+GGG | - | Chr4:15135852-15135871 | MsG0480019152.01.T01:CDS | 35.0% | |
| CAATAATTCAGAACCGTTAC+CGG | + | Chr4:15135251-15135270 | None:intergenic | 35.0% | |
| CAGGTAAATATAAATTGGGG+TGG | - | Chr4:15136448-15136467 | MsG0480019152.01.T01:intron | 35.0% | |
| CATGTAATAAGTACAGCAAG+TGG | + | Chr4:15136494-15136513 | None:intergenic | 35.0% | |
| CCCCAATTTATATTTACCTG+TGG | + | Chr4:15136448-15136467 | None:intergenic | 35.0% | |
| CCGTCGTGTAAATAGATTTA+AGG | - | Chr4:15136315-15136334 | MsG0480019152.01.T01:intron | 35.0% | |
| CTCATAATACCAGCCATATT+CGG | + | Chr4:15136135-15136154 | None:intergenic | 35.0% | |
| TAAGGTGCATGTTCAAGTAA+TGG | - | Chr4:15136333-15136352 | MsG0480019152.01.T01:intron | 35.0% | |
| TAGCTATCGCTCATAAATTG+CGG | + | Chr4:15136254-15136273 | None:intergenic | 35.0% | |
| TATTCTTCTTGAAAGGCTTG+AGG | - | Chr4:15135851-15135870 | MsG0480019152.01.T01:CDS | 35.0% | |
| TCAAGTAAGTGGTACACTAA+TGG | - | Chr4:15135905-15135924 | MsG0480019152.01.T01:intron | 35.0% | |
| TCAGTTTCATCCTGTTTGAT+CGG | - | Chr4:15136371-15136390 | MsG0480019152.01.T01:intron | 35.0% | |
| TGAATCATATCATCAGCCAT+GGG | + | Chr4:15135933-15135952 | None:intergenic | 35.0% | |
| TGCAACAATCTGTGATATTG+AGG | - | Chr4:15136109-15136128 | MsG0480019152.01.T01:intron | 35.0% | |
| TTGAATCATATCATCAGCCA+TGG | + | Chr4:15135934-15135953 | None:intergenic | 35.0% | |
| ! | CGGAATGTCCAAAATTTTGT+TGG | - | Chr4:15136391-15136410 | MsG0480019152.01.T01:intron | 35.0% |
| ! | GGGAAAACAGATGTTGTTTA+AGG | - | Chr4:15136612-15136631 | MsG0480019152.01.T01:intron | 35.0% |
| ! | TAAACAACATCTGTTTTCCC+AGG | + | Chr4:15136612-15136631 | None:intergenic | 35.0% |
| !! | CTTGGTCTTGTATTATGTCA+TGG | + | Chr4:15135758-15135777 | None:intergenic | 35.0% |
| !! | TGTTCAAGTAATGGATGCAA+CGG | - | Chr4:15136342-15136361 | MsG0480019152.01.T01:intron | 35.0% |
| AAATTGGGGTGGCTGAATAT+TGG | - | Chr4:15136459-15136478 | MsG0480019152.01.T01:intron | 40.0% | |
| ACAGGATTCATTGTTCACTC+TGG | - | Chr4:15135568-15135587 | MsG0480019152.01.T01:CDS | 40.0% | |
| AGGATTCATTGTTCACTCTG+GGG | - | Chr4:15135570-15135589 | MsG0480019152.01.T01:CDS | 40.0% | |
| CAGGATTCATTGTTCACTCT+GGG | - | Chr4:15135569-15135588 | MsG0480019152.01.T01:CDS | 40.0% | |
| CATAAATTGCGGTACTTACC+TGG | + | Chr4:15136243-15136262 | None:intergenic | 40.0% | |
| CGAATATGGCTGGTATTATG+AGG | - | Chr4:15136133-15136152 | MsG0480019152.01.T01:intron | 40.0% | |
| GTCTTGTATTATGTCATGGC+AGG | + | Chr4:15135754-15135773 | None:intergenic | 40.0% | |
| GTGGATGTTACAGTATCTCA+GGG | - | Chr4:15135876-15135895 | MsG0480019152.01.T01:CDS | 40.0% | |
| TGACATCACACTAGAAGACT+TGG | - | Chr4:15135439-15135458 | MsG0480019152.01.T01:intron | 40.0% | |
| TGTATTGCAGTCATGTGTAG+CGG | - | Chr4:15136079-15136098 | MsG0480019152.01.T01:CDS | 40.0% | |
| TGTGATATTGAGGCCGAATA+TGG | - | Chr4:15136119-15136138 | MsG0480019152.01.T01:intron | 40.0% | |
| TGTGGATGTTACAGTATCTC+AGG | - | Chr4:15135875-15135894 | MsG0480019152.01.T01:CDS | 40.0% | |
| TTTGGACATTCCGATCAAAC+AGG | + | Chr4:15136384-15136403 | None:intergenic | 40.0% | |
| !! | GTTCAAGTAATGGATGCAAC+GGG | - | Chr4:15136343-15136362 | MsG0480019152.01.T01:intron | 40.0% |
| !!! | ATGCTTTTTGGTTCCGGTAA+CGG | - | Chr4:15135235-15135254 | MsG0480019152.01.T01:CDS | 40.0% |
| AATCTAGGAATGCAGTTCCC+AGG | - | Chr4:15136222-15136241 | MsG0480019152.01.T01:intron | 45.0% | |
| AGGAAGATCTCGAGATCAGA+TGG | + | Chr4:15136592-15136611 | None:intergenic | 45.0% | |
| ATATTGAGGCCGAATATGGC+TGG | - | Chr4:15136123-15136142 | MsG0480019152.01.T01:intron | 45.0% | |
| ATCTGATCTCGAGATCTTCC+TGG | - | Chr4:15136591-15136610 | MsG0480019152.01.T01:CDS | 45.0% | |
| ATGTACCAAGTGTGCTGGAA+GGG | - | Chr4:15136157-15136176 | MsG0480019152.01.T01:intron | 45.0% | |
| GATTCATTGTTCACTCTGGG+GGG | - | Chr4:15135572-15135591 | MsG0480019152.01.T01:CDS | 45.0% | |
| GCATTCCTATCTGACAACTC+AGG | - | Chr4:15135611-15135630 | MsG0480019152.01.T01:CDS | 45.0% | |
| GGATTCATTGTTCACTCTGG+GGG | - | Chr4:15135571-15135590 | MsG0480019152.01.T01:CDS | 45.0% | |
| TCTGATCTCGAGATCTTCCT+GGG | - | Chr4:15136592-15136611 | MsG0480019152.01.T01:CDS | 45.0% | |
| TGCATCCTGAGTTGTCAGAT+AGG | + | Chr4:15135619-15135638 | None:intergenic | 45.0% | |
| ! | GTGGAAGGTGCAATCAATCT+AGG | - | Chr4:15136207-15136226 | MsG0480019152.01.T01:intron | 45.0% |
| CAGGGTGTGAGTCAAGTAAG+TGG | - | Chr4:15135894-15135913 | MsG0480019152.01.T01:intron | 50.0% | |
| CATGTACCAAGTGTGCTGGA+AGG | - | Chr4:15136156-15136175 | MsG0480019152.01.T01:intron | 50.0% | |
| CATTGGACATGTCGTCGAGA+AGG | - | Chr4:15135370-15135389 | MsG0480019152.01.T01:CDS | 50.0% | |
| CCTTCCACAGAACATCCTAC+CGG | + | Chr4:15136195-15136214 | None:intergenic | 50.0% | |
| GGAAGGGTCAAAGTTGTTGC+CGG | - | Chr4:15136173-15136192 | MsG0480019152.01.T01:intron | 50.0% | |
| TCTTGAAAGGCTTGAGGGTG+TGG | - | Chr4:15135857-15135876 | MsG0480019152.01.T01:CDS | 50.0% | |
| TGGTACACTAATGGTGCCCA+TGG | - | Chr4:15135914-15135933 | MsG0480019152.01.T01:intron | 50.0% | |
| TTTGACCCTTCCAGCACACT+TGG | + | Chr4:15136165-15136184 | None:intergenic | 50.0% | |
| CCGGTAGGATGTTCTGTGGA+AGG | - | Chr4:15136192-15136211 | MsG0480019152.01.T01:intron | 55.0% | |
| GAGGCATGTACCAAGTGTGC+TGG | - | Chr4:15136152-15136171 | MsG0480019152.01.T01:intron | 55.0% | |
| GCAGTCATGTGTAGCGGTTG+TGG | - | Chr4:15136085-15136104 | MsG0480019152.01.T01:CDS | 55.0% | |
| GGGTCAAAGTTGTTGCCGGT+AGG | - | Chr4:15136177-15136196 | MsG0480019152.01.T01:intron | 55.0% | |
| GTTGATCGATGCTCCACCAC+AGG | - | Chr4:15136429-15136448 | MsG0480019152.01.T01:intron | 55.0% | |
| GTTGCCGGTAGGATGTTCTG+TGG | - | Chr4:15136188-15136207 | MsG0480019152.01.T01:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 15135235 | 15136756 | 15135235 | ID=MsG0480019152.01;Name=MsG0480019152.01 |
| Chr4 | mRNA | 15135235 | 15136756 | 15135235 | ID=MsG0480019152.01.T01;Parent=MsG0480019152.01;Name=MsG0480019152.01.T01;_AED=0.34;_eAED=0.34;_QI=0|0|0|0.83|1|1|6|0|235 |
| Chr4 | exon | 15136741 | 15136756 | 15136741 | ID=MsG0480019152.01.T01:exon:4083;Parent=MsG0480019152.01.T01 |
| Chr4 | exon | 15136529 | 15136625 | 15136529 | ID=MsG0480019152.01.T01:exon:4082;Parent=MsG0480019152.01.T01 |
| Chr4 | exon | 15135996 | 15136125 | 15135996 | ID=MsG0480019152.01.T01:exon:4081;Parent=MsG0480019152.01.T01 |
| Chr4 | exon | 15135748 | 15135902 | 15135748 | ID=MsG0480019152.01.T01:exon:4080;Parent=MsG0480019152.01.T01 |
| Chr4 | exon | 15135541 | 15135661 | 15135541 | ID=MsG0480019152.01.T01:exon:4079;Parent=MsG0480019152.01.T01 |
| Chr4 | exon | 15135235 | 15135423 | 15135235 | ID=MsG0480019152.01.T01:exon:4078;Parent=MsG0480019152.01.T01 |
| Chr4 | CDS | 15136741 | 15136756 | 15136741 | ID=MsG0480019152.01.T01:cds;Parent=MsG0480019152.01.T01 |
| Chr4 | CDS | 15136529 | 15136625 | 15136529 | ID=MsG0480019152.01.T01:cds;Parent=MsG0480019152.01.T01 |
| Chr4 | CDS | 15135996 | 15136125 | 15135996 | ID=MsG0480019152.01.T01:cds;Parent=MsG0480019152.01.T01 |
| Chr4 | CDS | 15135748 | 15135902 | 15135748 | ID=MsG0480019152.01.T01:cds;Parent=MsG0480019152.01.T01 |
| Chr4 | CDS | 15135541 | 15135661 | 15135541 | ID=MsG0480019152.01.T01:cds;Parent=MsG0480019152.01.T01 |
| Chr4 | CDS | 15135235 | 15135423 | 15135235 | ID=MsG0480019152.01.T01:cds;Parent=MsG0480019152.01.T01 |
| Gene Sequence |
| Protein sequence |
