AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480019441.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019441.01.T01 MTR_4g032350 95.342 365 15 1 1 363 1 365 0.0 711
MsG0480019441.01.T01 MTR_4g032300 80.236 339 61 3 1 336 1 336 0.0 548
MsG0480019441.01.T01 MTR_4g032220 71.006 338 92 1 1 332 2 339 8.00e-165 464
MsG0480019441.01.T01 MTR_4g032240 65.294 340 110 2 1 332 2 341 1.55e-152 433
MsG0480019441.01.T01 MTR_4g032330 77.778 63 14 0 274 336 17 79 5.23e-22 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019441.01.T01 AT1G33970 57.751 329 135 2 1 329 6 330 1.55e-122 357
MsG0480019441.01.T01 AT1G33970 57.751 329 135 2 1 329 6 330 1.55e-122 357
MsG0480019441.01.T01 AT1G33970 57.751 329 135 2 1 329 6 330 1.55e-122 357
MsG0480019441.01.T01 AT1G33970 57.751 329 135 2 1 329 6 330 1.55e-122 357
MsG0480019441.01.T01 AT1G33970 58.029 274 111 2 1 274 6 275 1.97e-101 301
MsG0480019441.01.T01 AT1G33900 48.175 274 141 1 16 289 13 285 9.08e-89 270
MsG0480019441.01.T01 AT1G33950 49.084 273 138 1 19 291 13 284 2.60e-88 269
MsG0480019441.01.T01 AT4G09940 47.386 306 153 7 22 324 47 347 9.56e-85 262
MsG0480019441.01.T01 AT4G09940 47.386 306 153 7 22 324 90 390 7.32e-84 261
MsG0480019441.01.T01 AT1G33960 49.446 271 134 2 11 281 33 300 2.23e-82 255
MsG0480019441.01.T01 AT1G33930 45.583 283 150 2 7 289 23 301 3.09e-82 254
MsG0480019441.01.T01 AT1G33960 49.446 271 134 2 11 281 57 324 6.97e-82 254
MsG0480019441.01.T01 AT1G33950 47.253 273 137 2 19 291 13 278 1.77e-81 251
MsG0480019441.01.T01 AT4G09950 44.625 307 165 5 23 327 18 321 9.93e-79 245
MsG0480019441.01.T01 AT2G26820 42.857 336 164 6 18 325 1 336 2.19e-77 242
MsG0480019441.01.T01 AT2G26820 42.857 336 164 6 18 325 1 336 6.58e-77 242
MsG0480019441.01.T01 AT2G26820 42.604 338 166 6 18 327 1 338 1.31e-75 241
MsG0480019441.01.T01 AT2G26820 43.168 322 171 5 18 327 1 322 1.58e-75 241
MsG0480019441.01.T01 AT1G33910 46.154 273 141 2 17 289 8 274 3.05e-75 235
MsG0480019441.01.T01 AT1G33890 43.636 275 154 1 16 290 7 280 6.57e-74 233
MsG0480019441.01.T01 AT1G33890 43.636 275 154 1 16 290 7 280 6.57e-74 233
MsG0480019441.01.T01 AT4G09930 42.173 313 172 5 22 333 26 330 9.56e-69 219
MsG0480019441.01.T01 AT1G33870 43.777 233 129 1 47 279 1 231 1.11e-67 214
MsG0480019441.01.T01 AT1G33830 47.368 209 110 0 25 233 11 219 6.23e-66 208
MsG0480019441.01.T01 AT1G33880 40.376 213 121 2 16 228 17 223 1.30e-55 182
MsG0480019441.01.T01 AT1G33880 40.376 213 121 2 16 228 17 223 1.30e-55 182
MsG0480019441.01.T01 AT4G09950 40.784 255 146 5 75 327 7 258 8.83e-52 173

Find 58 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTAGCGTGCAGAAATTATT+TGG 0.212255 4:+20465110 MsG0480019441.01.T01:CDS
AAAGTTCAGGTGCCGATAAT+TGG 0.225099 4:+20464570 MsG0480019441.01.T01:CDS
TTAAACAACTCATCTGTATA+AGG 0.274695 4:-20465639 None:intergenic
AGAATGGCACAGCGATCTTC+TGG 0.289808 4:-20466850 None:intergenic
AATTGTCAAATGCATTGATT+TGG 0.316668 4:+20465010 MsG0480019441.01.T01:CDS
TACATGATTATCGTCTTTAC+CGG 0.324469 4:+20465149 MsG0480019441.01.T01:CDS
GGTTGCACTCTTCCCATTCC+CGG 0.338813 4:-20464654 None:intergenic
GAAACACTGGACCAGTATTT+AGG 0.362040 4:+20465197 MsG0480019441.01.T01:CDS
GCAACCGGAAATAGTATTCT+TGG 0.364280 4:+20464671 MsG0480019441.01.T01:CDS
TACTTCACCTTTAGAGGCTC+TGG 0.364446 4:-20465230 None:intergenic
GTCGACTGAGGCTAAGACTT+TGG 0.404860 4:+20464616 MsG0480019441.01.T01:CDS
AGAAGCAAACTCCCAATTAT+CGG 0.404869 4:-20464582 None:intergenic
TACAAGGTTGGAGGAACAAT+TGG 0.406298 4:+20466630 MsG0480019441.01.T01:CDS
TTGCTTGGACGTACCGGGAA+TGG 0.417653 4:+20464641 MsG0480019441.01.T01:CDS
AAGTTCAGGTGCCGATAATT+GGG 0.425024 4:+20464571 MsG0480019441.01.T01:CDS
ATGTACAGAAGAAGATATAT+TGG 0.445060 4:+20465815 MsG0480019441.01.T01:CDS
TGCTTGGACGTACCGGGAAT+GGG 0.450806 4:+20464642 MsG0480019441.01.T01:CDS
TGAGTTGTTTAAAGAACTAA+AGG 0.456734 4:+20465650 MsG0480019441.01.T01:CDS
GACAATCGCGACCTAAATAC+TGG 0.463624 4:-20465208 None:intergenic
TTGGCTTCAGAAACGAGAAA+TGG 0.469540 4:+20465752 MsG0480019441.01.T01:intron
TCGGTTGGAATTGAACTACT+TGG 0.471172 4:+20464981 MsG0480019441.01.T01:CDS
AAGAGAGAAGTTGTTGAACT+TGG 0.473678 4:-20465581 None:intergenic
AGGCAATTCTTTCTCTGTGC+GGG 0.474565 4:+20465505 MsG0480019441.01.T01:intron
GTAGGTAGAGTCAAAGTTGA+GGG 0.496709 4:+20466600 MsG0480019441.01.T01:intron
GTTAATGTTATTGACACTCC+AGG 0.505050 4:+20464782 MsG0480019441.01.T01:CDS
TTCTTCCAATTCATCTCCCC+CGG 0.507786 4:-20465168 None:intergenic
TGCATTGATTTGGCAAAGGA+CGG 0.508232 4:+20465020 MsG0480019441.01.T01:CDS
AAGTCGAGGACTAGCTCTTC+CGG 0.512151 4:+20464707 MsG0480019441.01.T01:CDS
CAAATGCATTGATTTGGCAA+AGG 0.532228 4:+20465016 MsG0480019441.01.T01:CDS
GGGAATGGGAAGAGTGCAAC+CGG 0.533029 4:+20464656 MsG0480019441.01.T01:CDS
CAAACAACTGAGCTGAATGA+TGG 0.544730 4:+20464752 MsG0480019441.01.T01:CDS
AGTTGTTTGCATTTCGCATG+AGG 0.544861 4:-20464738 None:intergenic
ACATGATTATCGTCTTTACC+GGG 0.549360 4:+20465150 MsG0480019441.01.T01:CDS
TCTCAGTAATGCGATTCAGC+TGG 0.552598 4:-20465872 None:intergenic
AGTTGAGGGCAGCAACTACA+AGG 0.558512 4:+20466614 MsG0480019441.01.T01:CDS
AGAGAGGCTGATGCATTGAA+AGG 0.561590 4:+20465792 MsG0480019441.01.T01:CDS
TTCGCATGAGGTGGTGACAC+CGG 0.562942 4:-20464726 None:intergenic
CGATTGTCCAGAGCCTCTAA+AGG 0.563031 4:+20465223 MsG0480019441.01.T01:CDS
GAGGGCAGCAACTACAAGGT+TGG 0.566036 4:+20466618 MsG0480019441.01.T01:CDS
GCTACTAGTAGATCAGAGAA+TGG 0.570168 4:-20466866 None:intergenic
GGAAGAAAATAATGAAACAC+TGG 0.577525 4:+20465184 MsG0480019441.01.T01:CDS
AGTCTTAGCCTCAGTCGACA+TGG 0.579628 4:-20464612 None:intergenic
ACTCAGAAGAAATCTTGAGC+AGG 0.583310 4:+20466732 MsG0480019441.01.T01:CDS
GCTGAATCGCATTACTGAGA+TGG 0.594828 4:+20465875 MsG0480019441.01.T01:CDS
TTGTTCTTCCATGTCGACTG+AGG 0.597913 4:+20464604 MsG0480019441.01.T01:CDS
GGCAGCAACTACAAGGTTGG+AGG 0.599892 4:+20466621 MsG0480019441.01.T01:CDS
TGTAGGTAGAGTCAAAGTTG+AGG 0.615435 4:+20466599 MsG0480019441.01.T01:intron
AGGCACAAGGAGAACTACGC+AGG 0.616578 4:+20466821 MsG0480019441.01.T01:CDS
TGTTTGCATTTCGCATGAGG+TGG 0.621167 4:-20464735 None:intergenic
CAGGCAATTCTTTCTCTGTG+CGG 0.624029 4:+20465504 MsG0480019441.01.T01:intron
AGAGCAAGCTGCAAGACTAG+AGG 0.632155 4:+20466657 MsG0480019441.01.T01:CDS
AACGTGGTAATATCACAGAA+TGG 0.638412 4:+20465609 MsG0480019441.01.T01:CDS
ATGATTATCGTCTTTACCGG+GGG 0.649473 4:+20465152 MsG0480019441.01.T01:CDS
TGTTAGAACACGCTTTACTG+AGG 0.655556 4:+20465070 MsG0480019441.01.T01:CDS
CATGATTATCGTCTTTACCG+GGG 0.681075 4:+20465151 MsG0480019441.01.T01:CDS
TAATATCACAGAATGGCGGA+CGG 0.693066 4:+20465616 MsG0480019441.01.T01:CDS
CATGAACAACTTCGACTGCG+AGG 0.715183 4:+20466757 MsG0480019441.01.T01:CDS
GTGGTAATATCACAGAATGG+CGG 0.767797 4:+20465612 MsG0480019441.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATAATATTTATTTTTTCA+AGG - Chr4:20465713-20465732 None:intergenic 10.0%
!! AAAAAATTCTCTCAAAATTT+AGG - Chr4:20465999-20466018 None:intergenic 15.0%
!! TAAATAATGTGAAAAAGATA+AGG + Chr4:20465318-20465337 MsG0480019441.01.T01:intron 15.0%
!!! GATTTAGTTAGTATTTTTTT+TGG + Chr4:20466142-20466161 MsG0480019441.01.T01:intron 15.0%
!! AAATAGTATTCTTGGAAAAA+AGG + Chr4:20464679-20464698 MsG0480019441.01.T01:CDS 20.0%
!! ATTGTTAATATTGAGAGTTA+TGG + Chr4:20464866-20464885 MsG0480019441.01.T01:intron 20.0%
!!! CAATTGTTATATGATTTTGT+AGG + Chr4:20466582-20466601 MsG0480019441.01.T01:intron 20.0%
!!! TAAGTTAAAACATTTTTACC+TGG - Chr4:20464803-20464822 None:intergenic 20.0%
!!! TACAGGATTATTTGATTTTT+CGG + Chr4:20464962-20464981 MsG0480019441.01.T01:intron 20.0%
! ATATCAATGAATTCATCGTT+TGG + Chr4:20465733-20465752 MsG0480019441.01.T01:intron 25.0%
! ATGTACAGAAGAAGATATAT+TGG + Chr4:20465815-20465834 MsG0480019441.01.T01:CDS 25.0%
! ATGTATCACTAACAGAAAAA+AGG - Chr4:20466304-20466323 None:intergenic 25.0%
! GTCTATTATTAGATACACTA+TGG + Chr4:20465908-20465927 MsG0480019441.01.T01:intron 25.0%
! GTTGATGTTAATATTAATGC+AGG + Chr4:20465485-20465504 MsG0480019441.01.T01:intron 25.0%
! TGAGTTGTTTAAAGAACTAA+AGG + Chr4:20465650-20465669 MsG0480019441.01.T01:CDS 25.0%
! TTAAACAACTCATCTGTATA+AGG - Chr4:20465642-20465661 None:intergenic 25.0%
! TTAAATAGGGGAAATTGTAA+CGG + Chr4:20466393-20466412 MsG0480019441.01.T01:intron 25.0%
!! GAAATGATGATGTATTCATA+AGG + Chr4:20466239-20466258 MsG0480019441.01.T01:intron 25.0%
!! GCATAATCTAAGAATGATTT+TGG + Chr4:20466552-20466571 MsG0480019441.01.T01:intron 25.0%
!! GTTTAAAGAACTAAAGGTAT+AGG + Chr4:20465656-20465675 MsG0480019441.01.T01:intron 25.0%
!! TTTTCCAAGAATACTATTTC+CGG - Chr4:20464678-20464697 None:intergenic 25.0%
!! TTTTTACTAGCATGCAATTA+GGG - Chr4:20465387-20465406 None:intergenic 25.0%
!!! AATTGTCAAATGCATTGATT+TGG + Chr4:20465010-20465029 MsG0480019441.01.T01:CDS 25.0%
!!! GTAGTTTTGGTAGTTAAATA+GGG + Chr4:20466380-20466399 MsG0480019441.01.T01:intron 25.0%
!!! TAGTTTTGGTAGTTAAATAG+GGG + Chr4:20466381-20466400 MsG0480019441.01.T01:intron 25.0%
!!! TATGAACAAGCTATTTTTGT+TGG + Chr4:20466210-20466229 MsG0480019441.01.T01:intron 25.0%
!!! TTTTTTACTAGCATGCAATT+AGG - Chr4:20465388-20465407 None:intergenic 25.0%
CAAACTTTGTGTACATTTAC+AGG + Chr4:20464945-20464964 MsG0480019441.01.T01:intron 30.0%
GGAAGAAAATAATGAAACAC+TGG + Chr4:20465184-20465203 MsG0480019441.01.T01:CDS 30.0%
TAAATAGGGGAAATTGTAAC+GGG + Chr4:20466394-20466413 MsG0480019441.01.T01:intron 30.0%
TACATGATTATCGTCTTTAC+CGG + Chr4:20465149-20465168 MsG0480019441.01.T01:CDS 30.0%
TGTGTGTTTGCATTCTATTT+AGG + Chr4:20466484-20466503 MsG0480019441.01.T01:intron 30.0%
! TCTTAATCGTATTGATCATG+CGG + Chr4:20466530-20466549 MsG0480019441.01.T01:intron 30.0%
! TTTTAGTACTTCACCTTTAG+AGG - Chr4:20465239-20465258 None:intergenic 30.0%
!! GCAATGGATTTTCAAAAACT+AGG - Chr4:20465426-20465445 None:intergenic 30.0%
!! GGATTATTTGATTTTTCGGT+TGG + Chr4:20464966-20464985 MsG0480019441.01.T01:intron 30.0%
!!! GGTAGTTTTGGTAGTTAAAT+AGG + Chr4:20466379-20466398 MsG0480019441.01.T01:intron 30.0%
AACGTGGTAATATCACAGAA+TGG + Chr4:20465609-20465628 MsG0480019441.01.T01:CDS 35.0%
AAGAGAGAAGTTGTTGAACT+TGG - Chr4:20465584-20465603 None:intergenic 35.0%
ACATGATTATCGTCTTTACC+GGG + Chr4:20465150-20465169 MsG0480019441.01.T01:CDS 35.0%
AGAAAAAAGGATGCACATCT+CGG - Chr4:20466291-20466310 None:intergenic 35.0%
AGAAGCAAACTCCCAATTAT+CGG - Chr4:20464585-20464604 None:intergenic 35.0%
ATCCATTGCTGAATCTCTAA+TGG + Chr4:20465437-20465456 MsG0480019441.01.T01:intron 35.0%
CTGTTAGTGATACATGTCTT+AGG + Chr4:20466309-20466328 MsG0480019441.01.T01:intron 35.0%
GAATCATTCACCTTACAAGT+CGG + Chr4:20465948-20465967 MsG0480019441.01.T01:intron 35.0%
GTTAATGTTATTGACACTCC+AGG + Chr4:20464782-20464801 MsG0480019441.01.T01:CDS 35.0%
GTTCTCTTATATCCCAACTA+AGG - Chr4:20466457-20466476 None:intergenic 35.0%
TGTTAGCGATACATGTCTTA+GGG + Chr4:20466350-20466369 MsG0480019441.01.T01:intron 35.0%
TTCCATTAGAGATTCAGCAA+TGG - Chr4:20465442-20465461 None:intergenic 35.0%
! AAAACTGAAGCATCCTTAGT+TGG + Chr4:20466441-20466460 MsG0480019441.01.T01:intron 35.0%
! AAACTGAAGCATCCTTAGTT+GGG + Chr4:20466442-20466461 MsG0480019441.01.T01:intron 35.0%
! GCTTTTCGATAACAAGACTA+AGG + Chr4:20465539-20465558 MsG0480019441.01.T01:CDS 35.0%
! TGTTCTAAACATGAACTCTG+TGG + Chr4:20466507-20466526 MsG0480019441.01.T01:intron 35.0%
!! ATTCACAAAACCGACTTGTA+AGG - Chr4:20465961-20465980 None:intergenic 35.0%
!! CAAATGCATTGATTTGGCAA+AGG + Chr4:20465016-20465035 MsG0480019441.01.T01:CDS 35.0%
ACTCAGAAGAAATCTTGAGC+AGG + Chr4:20466732-20466751 MsG0480019441.01.T01:CDS 40.0%
AGTTGTTTGCATTTCGCATG+AGG - Chr4:20464741-20464760 None:intergenic 40.0%
ATGATTATCGTCTTTACCGG+GGG + Chr4:20465152-20465171 MsG0480019441.01.T01:CDS 40.0%
CAAACAACTGAGCTGAATGA+TGG + Chr4:20464752-20464771 MsG0480019441.01.T01:CDS 40.0%
CATGATTATCGTCTTTACCG+GGG + Chr4:20465151-20465170 MsG0480019441.01.T01:CDS 40.0%
CGTAGCGTGCAGAAATTATT+TGG + Chr4:20465110-20465129 MsG0480019441.01.T01:CDS 40.0%
CTGTTAGCGATACATGTCTT+AGG + Chr4:20466349-20466368 MsG0480019441.01.T01:intron 40.0%
GAAAAAAGGTCTTCAAGTCG+AGG + Chr4:20464693-20464712 MsG0480019441.01.T01:CDS 40.0%
GAAACACTGGACCAGTATTT+AGG + Chr4:20465197-20465216 MsG0480019441.01.T01:CDS 40.0%
GCAACCGGAAATAGTATTCT+TGG + Chr4:20464671-20464690 MsG0480019441.01.T01:CDS 40.0%
GCTGCAAAAACAACAAAGAG+AGG + Chr4:20465776-20465795 MsG0480019441.01.T01:CDS 40.0%
GTAGGTAGAGTCAAAGTTGA+GGG + Chr4:20466600-20466619 MsG0480019441.01.T01:intron 40.0%
GTGGTAATATCACAGAATGG+CGG + Chr4:20465612-20465631 MsG0480019441.01.T01:CDS 40.0%
TAACTACCAAAACTACCGAC+TGG - Chr4:20466376-20466395 None:intergenic 40.0%
TACAAGGTTGGAGGAACAAT+TGG + Chr4:20466630-20466649 MsG0480019441.01.T01:CDS 40.0%
TCGGTTGGAATTGAACTACT+TGG + Chr4:20464981-20465000 MsG0480019441.01.T01:CDS 40.0%
TGTAGGTAGAGTCAAAGTTG+AGG + Chr4:20466599-20466618 MsG0480019441.01.T01:intron 40.0%
TGTTAGAACACGCTTTACTG+AGG + Chr4:20465070-20465089 MsG0480019441.01.T01:CDS 40.0%
TTGGCTTCAGAAACGAGAAA+TGG + Chr4:20465752-20465771 MsG0480019441.01.T01:intron 40.0%
! ACTCAGAAGACATTTTGAGC+AGG + Chr4:20466801-20466820 MsG0480019441.01.T01:CDS 40.0%
! ACTTCTCTCTTTTGTGAACG+TGG + Chr4:20465593-20465612 MsG0480019441.01.T01:CDS 40.0%
! TAATATCACAGAATGGCGGA+CGG + Chr4:20465616-20465635 MsG0480019441.01.T01:CDS 40.0%
!! AAAGTTCAGGTGCCGATAAT+TGG + Chr4:20464570-20464589 MsG0480019441.01.T01:CDS 40.0%
!! AAGTTCAGGTGCCGATAATT+GGG + Chr4:20464571-20464590 MsG0480019441.01.T01:CDS 40.0%
!! TGCATTGATTTGGCAAAGGA+CGG + Chr4:20465020-20465039 MsG0480019441.01.T01:CDS 40.0%
!!! GCTAAGACTTTGGTTTTGCT+TGG + Chr4:20464626-20464645 MsG0480019441.01.T01:CDS 40.0%
AGAGAGGCTGATGCATTGAA+AGG + Chr4:20465792-20465811 MsG0480019441.01.T01:CDS 45.0%
AGGCAATTCTTTCTCTGTGC+GGG + Chr4:20465505-20465524 MsG0480019441.01.T01:intron 45.0%
ATACATGTCTTAGGGCCAGT+CGG + Chr4:20466358-20466377 MsG0480019441.01.T01:intron 45.0%
CAGGCAATTCTTTCTCTGTG+CGG + Chr4:20465504-20465523 MsG0480019441.01.T01:intron 45.0%
GACAATCGCGACCTAAATAC+TGG - Chr4:20465211-20465230 None:intergenic 45.0%
GCTGAATCGCATTACTGAGA+TGG + Chr4:20465875-20465894 MsG0480019441.01.T01:CDS 45.0%
TCTCAGTAATGCGATTCAGC+TGG - Chr4:20465875-20465894 None:intergenic 45.0%
TGTTTGCATTTCGCATGAGG+TGG - Chr4:20464738-20464757 None:intergenic 45.0%
TTCTTCCAATTCATCTCCCC+CGG - Chr4:20465171-20465190 None:intergenic 45.0%
! AGACATTTTGAGCAGGCACA+AGG + Chr4:20466808-20466827 MsG0480019441.01.T01:CDS 45.0%
! TACTTCACCTTTAGAGGCTC+TGG - Chr4:20465233-20465252 None:intergenic 45.0%
! TTGTTCTTCCATGTCGACTG+AGG + Chr4:20464604-20464623 MsG0480019441.01.T01:CDS 45.0%
!!! TTGGTTTTGCTTGGACGTAC+CGG + Chr4:20464635-20464654 MsG0480019441.01.T01:CDS 45.0%
AGAATGGCACAGCGATCTTC+TGG - Chr4:20466853-20466872 None:intergenic 50.0%
AGAGCAAGCTGCAAGACTAG+AGG + Chr4:20466657-20466676 MsG0480019441.01.T01:CDS 50.0%
AGTCTTAGCCTCAGTCGACA+TGG - Chr4:20464615-20464634 None:intergenic 50.0%
AGTTGAGGGCAGCAACTACA+AGG + Chr4:20466614-20466633 MsG0480019441.01.T01:CDS 50.0%
CATGAACAACTTCGACTGCG+AGG + Chr4:20466757-20466776 MsG0480019441.01.T01:CDS 50.0%
CGATTGTCCAGAGCCTCTAA+AGG + Chr4:20465223-20465242 MsG0480019441.01.T01:CDS 50.0%
CTTTACCGGGGGAGATGAAT+TGG + Chr4:20465163-20465182 MsG0480019441.01.T01:CDS 50.0%
GTCGACTGAGGCTAAGACTT+TGG + Chr4:20464616-20464635 MsG0480019441.01.T01:CDS 50.0%
! GTAACGGGAATGCATCGCTT+AGG + Chr4:20466409-20466428 MsG0480019441.01.T01:intron 50.0%
! TTAGGGCCAGTCGGTAGTTT+TGG + Chr4:20466367-20466386 MsG0480019441.01.T01:intron 50.0%
!! AAGTCGAGGACTAGCTCTTC+CGG + Chr4:20464707-20464726 MsG0480019441.01.T01:CDS 50.0%
!! TGGTTTTGCTTGGACGTACC+GGG + Chr4:20464636-20464655 MsG0480019441.01.T01:CDS 50.0%
AGGCACAAGGAGAACTACGC+AGG + Chr4:20466821-20466840 MsG0480019441.01.T01:CDS 55.0%
GAGGGCAGCAACTACAAGGT+TGG + Chr4:20466618-20466637 MsG0480019441.01.T01:CDS 55.0%
GGCAGCAACTACAAGGTTGG+AGG + Chr4:20466621-20466640 MsG0480019441.01.T01:CDS 55.0%
GGTTGCACTCTTCCCATTCC+CGG - Chr4:20464657-20464676 None:intergenic 55.0%
TGCTTGGACGTACCGGGAAT+GGG + Chr4:20464642-20464661 MsG0480019441.01.T01:CDS 55.0%
TTCGCATGAGGTGGTGACAC+CGG - Chr4:20464729-20464748 None:intergenic 55.0%
TTGCTTGGACGTACCGGGAA+TGG + Chr4:20464641-20464660 MsG0480019441.01.T01:CDS 55.0%
! GGGAATGGGAAGAGTGCAAC+CGG + Chr4:20464656-20464675 MsG0480019441.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr4 gene 20464563 20466876 20464563 ID=MsG0480019441.01;Name=MsG0480019441.01
Chr4 mRNA 20464563 20466876 20464563 ID=MsG0480019441.01.T01;Parent=MsG0480019441.01;Name=MsG0480019441.01.T01;_AED=0.39;_eAED=0.41;_QI=0|0|0|1|1|1|5|0|363
Chr4 exon 20464563 20464803 20464563 ID=MsG0480019441.01.T01:exon:9897;Parent=MsG0480019441.01.T01
Chr4 exon 20464967 20465244 20464967 ID=MsG0480019441.01.T01:exon:9898;Parent=MsG0480019441.01.T01
Chr4 exon 20465507 20465671 20465507 ID=MsG0480019441.01.T01:exon:9899;Parent=MsG0480019441.01.T01
Chr4 exon 20465762 20465896 20465762 ID=MsG0480019441.01.T01:exon:9900;Parent=MsG0480019441.01.T01
Chr4 exon 20466604 20466876 20466604 ID=MsG0480019441.01.T01:exon:9901;Parent=MsG0480019441.01.T01
Chr4 CDS 20464563 20464803 20464563 ID=MsG0480019441.01.T01:cds;Parent=MsG0480019441.01.T01
Chr4 CDS 20464967 20465244 20464967 ID=MsG0480019441.01.T01:cds;Parent=MsG0480019441.01.T01
Chr4 CDS 20465507 20465671 20465507 ID=MsG0480019441.01.T01:cds;Parent=MsG0480019441.01.T01
Chr4 CDS 20465762 20465896 20465762 ID=MsG0480019441.01.T01:cds;Parent=MsG0480019441.01.T01
Chr4 CDS 20466604 20466876 20466604 ID=MsG0480019441.01.T01:cds;Parent=MsG0480019441.01.T01
Gene Sequence

>MsG0480019441.01.T01

ATGGGGGAAAGTTCAGGTGCCGATAATTGGGAGTTTGCTTCTTGTTCTTCCATGTCGACTGAGGCTAAGACTTTGGTTTTGCTTGGACGTACCGGGAATGGGAAGAGTGCAACCGGAAATAGTATTCTTGGAAAAAAGGTCTTCAAGTCGAGGACTAGCTCTTCCGGTGTCACCACCTCATGCGAAATGCAAACAACTGAGCTGAATGATGGACAAATTGTTAATGTTATTGACACTCCAGGATTATTTGATTTTTCGGTTGGAATTGAACTACTTGGCAAAGAAATTGTCAAATGCATTGATTTGGCAAAGGACGGAATACATGCTTTAATTGTAGTATTCTCTGTTAGAACACGCTTTACTGAGGAAGAAGAGAGTGCTCTGCGTAGCGTGCAGAAATTATTTGGAAGCAAAATTATTGACTACATGATTATCGTCTTTACCGGGGGAGATGAATTGGAAGAAAATAATGAAACACTGGACCAGTATTTAGGTCGCGATTGTCCAGAGCCTCTAAAGGCAATTCTTTCTCTGTGCGGGAATCGATGTGTGCTTTTCGATAACAAGACTAAGGATGAAAAGAAGCAATCTGACCAAGTTCAACAACTTCTCTCTTTTGTGAACGTGGTAATATCACAGAATGGCGGACGGCCTTATACAGATGAGTTGTTTAAAGAACTAAAGAAACGAGAAATGGAGCTGCAAAAACAACAAAGAGAGGCTGATGCATTGAAAGGATGTACAGAAGAAGATATATTGGAGCATAAAAAGCAAAGTGAGCAAGCATATAATGACCAGCTGAATCGCATTACTGAGATGGTAGAGTCAAAGTTGAGGGCAGCAACTACAAGGTTGGAGGAACAATTGGCAAAAGAGCAAGCTGCAAGACTAGAGGCAGAAAAGTATGCACATGCTGCTCAAATGAAATCAGATGAAGAAATTATGAAACTCAGAAGAAATCTTGAGCAGGCACATGAACAACTTCGACTGCGAGGTCAAGATACATCATTTAAGAAACTCAGAAGACATTTTGAGCAGGCACAAGGAGAACTACGCAGGCGAGTTCCAGAAGATCGCTGTGCCATTCTCTGA
Protein sequence

>MsG0480019441.01.T01

MGESSGADNWEFASCSSMSTEAKTLVLLGRTGNGKSATGNSILGKKVFKSRTSSSGVTTSCEMQTTELNDGQIVNVIDTPGLFDFSVGIELLGKEIVKCIDLAKDGIHALIVVFSVRTRFTEEEESALRSVQKLFGSKIIDYMIIVFTGGDELEENNETLDQYLGRDCPEPLKAILSLCGNRCVLFDNKTKDEKKQSDQVQQLLSFVNVVISQNGGRPYTDELFKELKKREMELQKQQREADALKGCTEEDILEHKKQSEQAYNDQLNRITEMVESKLRAATTRLEEQLAKEQAARLEAEKYAHAAQMKSDEEIMKLRRNLEQAHEQLRLRGQDTSFKKLRRHFEQAQGELRRRVPEDRCAIL*