Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019848.01.T01 | KEH16502.1 | 72.254 | 173 | 9 | 1 | 9 | 142 | 37 | 209 | 5.37E-79 | 242 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019848.01.T01 | Q500U8 | 67.647 | 68 | 21 | 1 | 9 | 76 | 40 | 106 | 1.32E-23 | 96.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019848.01.T01 | A0A072TGL0 | 72.254 | 173 | 9 | 1 | 9 | 142 | 37 | 209 | 2.57e-79 | 242 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0480019847.01 | MsG0480019848.01 | 0.843238 | 1.583935e-58 | 2.462535e-55 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019848.01.T01 | MTR_0164s0070 | 72.254 | 173 | 9 | 1 | 9 | 142 | 37 | 209 | 6.51e-83 | 242 |
| MsG0480019848.01.T01 | MTR_2g101330 | 90.278 | 72 | 7 | 0 | 9 | 80 | 37 | 108 | 2.25e-39 | 135 |
| MsG0480019848.01.T01 | MTR_2g101330 | 86.667 | 45 | 6 | 0 | 80 | 124 | 231 | 275 | 7.72e-21 | 86.7 |
| MsG0480019848.01.T01 | MTR_8g062110 | 56.923 | 65 | 27 | 1 | 12 | 76 | 44 | 107 | 1.91e-19 | 82.0 |
| MsG0480019848.01.T01 | MTR_8g062110 | 56.923 | 65 | 27 | 1 | 12 | 76 | 44 | 107 | 1.91e-19 | 82.0 |
| MsG0480019848.01.T01 | MTR_8g062440 | 53.623 | 69 | 31 | 1 | 8 | 76 | 40 | 107 | 2.80e-19 | 82.0 |
| MsG0480019848.01.T01 | MTR_8g062110 | 56.923 | 65 | 27 | 1 | 12 | 76 | 44 | 107 | 2.86e-19 | 82.0 |
| MsG0480019848.01.T01 | MTR_8g062110 | 56.923 | 65 | 27 | 1 | 12 | 76 | 53 | 116 | 3.48e-19 | 82.0 |
| MsG0480019848.01.T01 | MTR_4g077100 | 52.778 | 72 | 33 | 1 | 12 | 83 | 46 | 116 | 5.79e-19 | 80.9 |
| MsG0480019848.01.T01 | MTR_8g062440 | 56.250 | 64 | 27 | 1 | 13 | 76 | 44 | 106 | 9.30e-19 | 80.9 |
| MsG0480019848.01.T01 | MTR_4g077100 | 55.385 | 65 | 28 | 1 | 12 | 76 | 46 | 109 | 1.02e-18 | 80.9 |
| MsG0480019848.01.T01 | MTR_8g062440 | 56.250 | 64 | 27 | 1 | 13 | 76 | 44 | 106 | 1.22e-18 | 80.5 |
| MsG0480019848.01.T01 | MTR_4g077130 | 53.846 | 65 | 29 | 1 | 12 | 76 | 44 | 107 | 1.01e-17 | 77.8 |
| MsG0480019848.01.T01 | MTR_3g005210 | 53.125 | 64 | 29 | 1 | 13 | 76 | 42 | 104 | 1.06e-17 | 77.8 |
| MsG0480019848.01.T01 | MTR_3g005170 | 53.125 | 64 | 29 | 1 | 13 | 76 | 46 | 108 | 6.70e-17 | 75.1 |
| MsG0480019848.01.T01 | MTR_3g005170 | 53.125 | 64 | 29 | 1 | 13 | 76 | 46 | 108 | 1.04e-16 | 75.1 |
| MsG0480019848.01.T01 | MTR_4g009040 | 48.529 | 68 | 35 | 0 | 13 | 80 | 48 | 115 | 1.37e-15 | 72.0 |
| MsG0480019848.01.T01 | MTR_4g009690 | 48.529 | 68 | 35 | 0 | 13 | 80 | 48 | 115 | 1.93e-15 | 71.6 |
| MsG0480019848.01.T01 | MTR_4g009690 | 48.529 | 68 | 35 | 0 | 13 | 80 | 48 | 115 | 2.02e-15 | 71.6 |
| MsG0480019848.01.T01 | MTR_1g022440 | 50.000 | 64 | 31 | 1 | 13 | 76 | 44 | 106 | 3.77e-14 | 68.2 |
| MsG0480019848.01.T01 | MTR_4g009040 | 45.833 | 72 | 35 | 1 | 13 | 80 | 48 | 119 | 1.26e-13 | 66.6 |
| MsG0480019848.01.T01 | MTR_1g022445 | 50.000 | 64 | 31 | 1 | 13 | 76 | 44 | 106 | 1.27e-13 | 66.6 |
| MsG0480019848.01.T01 | MTR_5g056600 | 44.595 | 74 | 41 | 0 | 12 | 85 | 39 | 112 | 3.79e-13 | 65.5 |
| MsG0480019848.01.T01 | MTR_2g104960 | 54.098 | 61 | 23 | 1 | 16 | 76 | 58 | 113 | 3.02e-12 | 62.8 |
| MsG0480019848.01.T01 | MTR_8g062710 | 44.828 | 58 | 32 | 0 | 13 | 70 | 45 | 102 | 9.63e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019848.01.T01 | AT4G35420 | 67.647 | 68 | 21 | 1 | 9 | 76 | 40 | 106 | 1.34e-24 | 96.7 |
| MsG0480019848.01.T01 | AT1G09490 | 50.000 | 80 | 39 | 1 | 1 | 80 | 1 | 79 | 1.91e-18 | 79.7 |
| MsG0480019848.01.T01 | AT1G51410 | 48.913 | 92 | 42 | 2 | 12 | 103 | 44 | 130 | 2.25e-18 | 79.7 |
| MsG0480019848.01.T01 | AT1G66800 | 55.385 | 65 | 28 | 1 | 12 | 76 | 43 | 106 | 7.21e-18 | 78.6 |
| MsG0480019848.01.T01 | AT1G09490 | 52.857 | 70 | 32 | 1 | 11 | 80 | 42 | 110 | 1.75e-17 | 77.4 |
| MsG0480019848.01.T01 | AT5G19440 | 57.812 | 64 | 26 | 1 | 13 | 76 | 46 | 108 | 2.55e-17 | 77.0 |
| MsG0480019848.01.T01 | AT1G09500 | 48.571 | 70 | 36 | 0 | 11 | 80 | 42 | 111 | 1.26e-16 | 74.7 |
| MsG0480019848.01.T01 | AT1G09500 | 48.571 | 70 | 36 | 0 | 11 | 80 | 42 | 111 | 1.74e-16 | 74.7 |
| MsG0480019848.01.T01 | AT1G09500 | 48.571 | 70 | 36 | 0 | 11 | 80 | 8 | 77 | 1.80e-16 | 74.3 |
| MsG0480019848.01.T01 | AT1G09480 | 50.000 | 70 | 34 | 1 | 11 | 80 | 42 | 110 | 3.97e-16 | 73.6 |
| MsG0480019848.01.T01 | AT1G09510 | 51.515 | 66 | 31 | 1 | 11 | 76 | 42 | 106 | 4.31e-16 | 73.6 |
| MsG0480019848.01.T01 | AT1G09480 | 50.000 | 70 | 34 | 1 | 11 | 80 | 89 | 157 | 5.32e-16 | 73.6 |
| MsG0480019848.01.T01 | AT5G42800 | 47.059 | 68 | 35 | 1 | 9 | 76 | 40 | 106 | 8.49e-13 | 64.7 |
| MsG0480019848.01.T01 | AT2G33590 | 46.154 | 65 | 35 | 0 | 12 | 76 | 43 | 107 | 1.87e-12 | 63.5 |
| MsG0480019848.01.T01 | AT1G68540 | 36.957 | 92 | 55 | 1 | 11 | 102 | 38 | 126 | 2.11e-12 | 63.2 |
| MsG0480019848.01.T01 | AT5G58490 | 36.559 | 93 | 54 | 1 | 11 | 103 | 43 | 130 | 2.95e-12 | 62.8 |
| MsG0480019848.01.T01 | AT2G33600 | 43.077 | 65 | 37 | 0 | 12 | 76 | 43 | 107 | 9.61e-12 | 61.2 |
| MsG0480019848.01.T01 | AT2G02400 | 41.538 | 65 | 38 | 0 | 16 | 80 | 43 | 107 | 3.44e-11 | 59.7 |
| MsG0480019848.01.T01 | AT2G45400 | 42.667 | 75 | 40 | 2 | 3 | 76 | 11 | 83 | 3.80e-11 | 59.7 |
| MsG0480019848.01.T01 | AT1G15950 | 48.529 | 68 | 30 | 2 | 13 | 80 | 48 | 110 | 3.91e-11 | 59.3 |
| MsG0480019848.01.T01 | AT1G15950 | 48.529 | 68 | 30 | 2 | 13 | 80 | 48 | 110 | 3.95e-11 | 59.3 |
| MsG0480019848.01.T01 | AT1G15950 | 48.529 | 68 | 30 | 2 | 13 | 80 | 48 | 110 | 4.36e-11 | 59.7 |
| MsG0480019848.01.T01 | AT1G15950 | 48.529 | 68 | 30 | 2 | 13 | 80 | 48 | 110 | 4.36e-11 | 59.7 |
| MsG0480019848.01.T01 | AT1G15950 | 48.529 | 68 | 30 | 2 | 13 | 80 | 48 | 110 | 4.98e-11 | 59.3 |
| MsG0480019848.01.T01 | AT1G15950 | 48.529 | 68 | 30 | 2 | 13 | 80 | 48 | 110 | 5.06e-11 | 59.3 |
Find 33 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCATAAAGTTGAACATTTA+TGG | 0.085081 | 4:+28421112 | MsG0480019848.01.T01:CDS |
| TAGCTTCGACAATGCGATTA+TGG | 0.197247 | 4:+28421194 | MsG0480019848.01.T01:CDS |
| ACTAGTCCAAGCTGATTTAA+TGG | 0.254779 | 4:+28421164 | MsG0480019848.01.T01:CDS |
| CGCAAGGACACTCTACCTTT+TGG | 0.261628 | 4:-28422293 | None:intergenic |
| CCTTTGCAGTTCAGCAATAA+TGG | 0.265699 | 4:+28422217 | MsG0480019848.01.T01:CDS |
| AGTTGAACATTTATGGAAGT+TGG | 0.340616 | 4:+28421119 | MsG0480019848.01.T01:CDS |
| AGGATCATTTGATATATGAT+TGG | 0.357612 | 4:-28421253 | None:intergenic |
| CAAAATACAGGCAGAAATCT+TGG | 0.360481 | 4:+28421426 | MsG0480019848.01.T01:intron |
| AGCTTCGACAATGCGATTAT+GGG | 0.388369 | 4:+28421195 | MsG0480019848.01.T01:CDS |
| AATAATGGATAATGATGATT+TGG | 0.393430 | 4:+28422232 | MsG0480019848.01.T01:CDS |
| GGATCATTTGATATATGATT+GGG | 0.413478 | 4:-28421252 | None:intergenic |
| TTTCTTCCATTAAATCAGCT+TGG | 0.450929 | 4:-28421170 | None:intergenic |
| TAGAGTGTCCTTGCGTTTCA+CGG | 0.461971 | 4:+28422301 | MsG0480019848.01.T01:CDS |
| TTTGATATATGATTGGGTAC+TGG | 0.478192 | 4:-28421246 | None:intergenic |
| ATGCTAGCAAATCGTTATCC+TGG | 0.493557 | 4:+28422260 | MsG0480019848.01.T01:CDS |
| TTTAGCGTACCTTGGACCGC+TGG | 0.502028 | 4:-28421451 | None:intergenic |
| AGGCTTTGTTCTCATAAAGA+AGG | 0.503784 | 4:-28422181 | None:intergenic |
| TCATATATCAAATGATCCTA+AGG | 0.522536 | 4:+28421257 | MsG0480019848.01.T01:CDS |
| CCTGGTTTCCCATTCCCAAA+AGG | 0.524676 | 4:+28422278 | MsG0480019848.01.T01:CDS |
| TGAACATTTATGGAAGTTGG+AGG | 0.548932 | 4:+28421122 | MsG0480019848.01.T01:CDS |
| CCATTATTGCTGAACTGCAA+AGG | 0.550463 | 4:-28422217 | None:intergenic |
| TATGAGAACAAAGCCTCTCA+TGG | 0.568344 | 4:+28422188 | MsG0480019848.01.T01:CDS |
| ATCTTGGAACCAGCGGTCCA+AGG | 0.581499 | 4:+28421442 | MsG0480019848.01.T01:CDS |
| ACTAGTTCGAGTCTTTCTGT+TGG | 0.581772 | 4:-28421147 | None:intergenic |
| AGGATAACGATTTGCTAGCA+TGG | 0.597463 | 4:-28422258 | None:intergenic |
| GAACATTTATGGAAGTTGGA+GGG | 0.598986 | 4:+28421123 | MsG0480019848.01.T01:CDS |
| AATGCGATTATGGGATGCAA+AGG | 0.600616 | 4:+28421204 | MsG0480019848.01.T01:CDS |
| GTGAACCACCGTGAAACGCA+AGG | 0.619513 | 4:-28422309 | None:intergenic |
| AGAACAAAGCCTCTCATGGT+AGG | 0.634432 | 4:+28422192 | MsG0480019848.01.T01:CDS |
| GCAAAGGTACCTACCATGAG+AGG | 0.646700 | 4:-28422201 | None:intergenic |
| TATATGATTGGGTACTGGAG+AGG | 0.647630 | 4:-28421241 | None:intergenic |
| GGCAGAAATCTTGGAACCAG+CGG | 0.649586 | 4:+28421435 | MsG0480019848.01.T01:intron |
| AGTGTCCTTGCGTTTCACGG+TGG | 0.687838 | 4:+28422304 | MsG0480019848.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTCATTTATATTTTTCAT+AGG | + | Chr4:28421286-28421305 | MsG0480019848.01.T01:intron | 10.0% |
| !! | AGTAATAGTAATACTATAAA+AGG | - | Chr4:28421721-28421740 | None:intergenic | 15.0% |
| !! | GTAATAGTAATACTATAAAA+GGG | - | Chr4:28421720-28421739 | None:intergenic | 15.0% |
| !! | TACAAATATATAATTACTTG+AGG | - | Chr4:28421638-28421657 | None:intergenic | 15.0% |
| !! | ATATTGCTAATTAAACTAAC+AGG | + | Chr4:28422131-28422150 | MsG0480019848.01.T01:intron | 20.0% |
| !! | TATTGCTAATTAAACTAACA+GGG | + | Chr4:28422132-28422151 | MsG0480019848.01.T01:intron | 20.0% |
| !!! | AAGTCTAGCTTTTATAATAA+AGG | - | Chr4:28421866-28421885 | None:intergenic | 20.0% |
| !!! | AATAATGGATAATGATGATT+TGG | + | Chr4:28422232-28422251 | MsG0480019848.01.T01:CDS | 20.0% |
| !!! | TGTTAGTTTAATTAGCAATA+TGG | - | Chr4:28422132-28422151 | None:intergenic | 20.0% |
| ! | AGATAATGAAATGTAATTCG+AGG | + | Chr4:28421772-28421791 | MsG0480019848.01.T01:intron | 25.0% |
| ! | AGCATAAAGTTGAACATTTA+TGG | + | Chr4:28421112-28421131 | MsG0480019848.01.T01:CDS | 25.0% |
| ! | AGGATCATTTGATATATGAT+TGG | - | Chr4:28421256-28421275 | None:intergenic | 25.0% |
| ! | ATTCTACCATCATTCATAAT+TGG | + | Chr4:28421983-28422002 | MsG0480019848.01.T01:intron | 25.0% |
| ! | ATTGCTAATTAAACTAACAG+GGG | + | Chr4:28422133-28422152 | MsG0480019848.01.T01:intron | 25.0% |
| ! | CCTGCAAGTATATATAAAAA+TGG | - | Chr4:28421087-28421106 | None:intergenic | 25.0% |
| ! | GGATCATTTGATATATGATT+GGG | - | Chr4:28421255-28421274 | None:intergenic | 25.0% |
| ! | TAAATGAAATATCACACCTT+AGG | - | Chr4:28421276-28421295 | None:intergenic | 25.0% |
| ! | TCATATATCAAATGATCCTA+AGG | + | Chr4:28421257-28421276 | MsG0480019848.01.T01:CDS | 25.0% |
| !! | AGACTTGTGTTATTGAATTA+GGG | + | Chr4:28421880-28421899 | MsG0480019848.01.T01:intron | 25.0% |
| !! | TAGACTTGTGTTATTGAATT+AGG | + | Chr4:28421879-28421898 | MsG0480019848.01.T01:intron | 25.0% |
| !! | TCAATTTTTGTCCAAAATAC+AGG | + | Chr4:28421414-28421433 | MsG0480019848.01.T01:intron | 25.0% |
| !!! | CCATTTTTATATATACTTGC+AGG | + | Chr4:28421084-28421103 | MsG0480019848.01.T01:CDS | 25.0% |
| AGTTGAACATTTATGGAAGT+TGG | + | Chr4:28421119-28421138 | MsG0480019848.01.T01:CDS | 30.0% | |
| CAATGAGAAAGGAATATACT+TGG | + | Chr4:28421955-28421974 | MsG0480019848.01.T01:intron | 30.0% | |
| TAATCAAAATCCTCACATCA+TGG | + | Chr4:28421342-28421361 | MsG0480019848.01.T01:intron | 30.0% | |
| TGATTAATGCATGAGCTTAT+AGG | - | Chr4:28421328-28421347 | None:intergenic | 30.0% | |
| TTTCTTCCATTAAATCAGCT+TGG | - | Chr4:28421173-28421192 | None:intergenic | 30.0% | |
| TTTGATATATGATTGGGTAC+TGG | - | Chr4:28421249-28421268 | None:intergenic | 30.0% | |
| CAAAATACAGGCAGAAATCT+TGG | + | Chr4:28421426-28421445 | MsG0480019848.01.T01:intron | 35.0% | |
| CATAAATATGTTGGCAAGCT+AGG | - | Chr4:28422010-28422029 | None:intergenic | 35.0% | |
| CTAGGTCCAATTATGAATGA+TGG | - | Chr4:28421992-28422011 | None:intergenic | 35.0% | |
| GAACATTTATGGAAGTTGGA+GGG | + | Chr4:28421123-28421142 | MsG0480019848.01.T01:CDS | 35.0% | |
| GCAGTGGAACATAAATATGT+TGG | - | Chr4:28422019-28422038 | None:intergenic | 35.0% | |
| TACATGCACACAAATGTTCT+AGG | + | Chr4:28422066-28422085 | MsG0480019848.01.T01:intron | 35.0% | |
| TCGGAATATTGCAATGAGAA+AGG | + | Chr4:28421944-28421963 | MsG0480019848.01.T01:intron | 35.0% | |
| TGAACATTTATGGAAGTTGG+AGG | + | Chr4:28421122-28421141 | MsG0480019848.01.T01:CDS | 35.0% | |
| ! | ACTAGTCCAAGCTGATTTAA+TGG | + | Chr4:28421164-28421183 | MsG0480019848.01.T01:CDS | 35.0% |
| ! | CAAGATTTCTGCCTGTATTT+TGG | - | Chr4:28421428-28421447 | None:intergenic | 35.0% |
| ! | TGTGTTATTGAATTAGGGCA+TGG | + | Chr4:28421885-28421904 | MsG0480019848.01.T01:intron | 35.0% |
| !! | AGGCTTTGTTCTCATAAAGA+AGG | - | Chr4:28422184-28422203 | None:intergenic | 35.0% |
| AATGCGATTATGGGATGCAA+AGG | + | Chr4:28421204-28421223 | MsG0480019848.01.T01:CDS | 40.0% | |
| ACTAGTTCGAGTCTTTCTGT+TGG | - | Chr4:28421150-28421169 | None:intergenic | 40.0% | |
| AGCTTCGACAATGCGATTAT+GGG | + | Chr4:28421195-28421214 | MsG0480019848.01.T01:CDS | 40.0% | |
| ATGCTAGCAAATCGTTATCC+TGG | + | Chr4:28422260-28422279 | MsG0480019848.01.T01:CDS | 40.0% | |
| CCATTATTGCTGAACTGCAA+AGG | - | Chr4:28422220-28422239 | None:intergenic | 40.0% | |
| CCTTTGCAGTTCAGCAATAA+TGG | + | Chr4:28422217-28422236 | MsG0480019848.01.T01:CDS | 40.0% | |
| GACTCGTCTATTGGTATGTT+TGG | - | Chr4:28421568-28421587 | None:intergenic | 40.0% | |
| GCAACATATTTAGCGTACCT+TGG | - | Chr4:28421462-28421481 | None:intergenic | 40.0% | |
| TACCAATAGACGAGTCATCT+TGG | + | Chr4:28421572-28421591 | MsG0480019848.01.T01:intron | 40.0% | |
| TACTTGAGGAAATGTGTACC+TGG | - | Chr4:28421624-28421643 | None:intergenic | 40.0% | |
| TAGCTTCGACAATGCGATTA+TGG | + | Chr4:28421194-28421213 | MsG0480019848.01.T01:CDS | 40.0% | |
| TATGAGAACAAAGCCTCTCA+TGG | + | Chr4:28422188-28422207 | MsG0480019848.01.T01:CDS | 40.0% | |
| TGTATAGTCTCCATGATGTG+AGG | - | Chr4:28421355-28421374 | None:intergenic | 40.0% | |
| !! | ACACTCTACCTTTTGGGAAT+GGG | - | Chr4:28422289-28422308 | None:intergenic | 40.0% |
| !! | AGGATAACGATTTGCTAGCA+TGG | - | Chr4:28422261-28422280 | None:intergenic | 40.0% |
| !! | TATATGATTGGGTACTGGAG+AGG | - | Chr4:28421244-28421263 | None:intergenic | 40.0% |
| ACTAACAGCTGAAGATGACG+CGG | - | Chr4:28421527-28421546 | None:intergenic | 45.0% | |
| ACTGGCAGAAAAAGCAGCTT+CGG | + | Chr4:28421925-28421944 | MsG0480019848.01.T01:intron | 45.0% | |
| AGAACAAAGCCTCTCATGGT+AGG | + | Chr4:28422192-28422211 | MsG0480019848.01.T01:CDS | 45.0% | |
| CTCCAAGATGACTCGTCTAT+TGG | - | Chr4:28421577-28421596 | None:intergenic | 45.0% | |
| GGAATTGTGTGAGAAACTCC+AGG | + | Chr4:28421603-28421622 | MsG0480019848.01.T01:intron | 45.0% | |
| GGCTAACACAACTCGAACAA+GGG | - | Chr4:28421506-28421525 | None:intergenic | 45.0% | |
| TTGAATTAGGGCATGGTACC+CGG | + | Chr4:28421892-28421911 | MsG0480019848.01.T01:intron | 45.0% | |
| ! | GATGTGCTAGGCTTGTTCAA+AGG | + | Chr4:28422043-28422062 | MsG0480019848.01.T01:intron | 45.0% |
| ! | GCAAGGACACTCTACCTTTT+GGG | - | Chr4:28422295-28422314 | None:intergenic | 45.0% |
| ! | TAGAGTGTCCTTGCGTTTCA+CGG | + | Chr4:28422301-28422320 | MsG0480019848.01.T01:CDS | 45.0% |
| !! | GACACTCTACCTTTTGGGAA+TGG | - | Chr4:28422290-28422309 | None:intergenic | 45.0% |
| !!! | TTTTTTTTATATTTTACAAA+TGG | + | Chr4:28421812-28421831 | MsG0480019848.01.T01:intron | 5.0% |
| AACACAACTCGAACAAGGGC+TGG | - | Chr4:28421502-28421521 | None:intergenic | 50.0% | |
| CCTGGTTTCCCATTCCCAAA+AGG | + | Chr4:28422278-28422297 | MsG0480019848.01.T01:CDS | 50.0% | |
| CGAGTCATCTTGGAGCTCAT+AGG | + | Chr4:28421582-28421601 | MsG0480019848.01.T01:intron | 50.0% | |
| CGGCTAACACAACTCGAACA+AGG | - | Chr4:28421507-28421526 | None:intergenic | 50.0% | |
| GGCAGAAATCTTGGAACCAG+CGG | + | Chr4:28421435-28421454 | MsG0480019848.01.T01:intron | 50.0% | |
| TCCACTGCATCTGATGTGCT+AGG | + | Chr4:28422031-28422050 | MsG0480019848.01.T01:intron | 50.0% | |
| TCTGCCAGTGTCTTTGTGAC+CGG | - | Chr4:28421914-28421933 | None:intergenic | 50.0% | |
| ! | CGCAAGGACACTCTACCTTT+TGG | - | Chr4:28422296-28422315 | None:intergenic | 50.0% |
| !! | CCTTTTGGGAATGGGAAACC+AGG | - | Chr4:28422281-28422300 | None:intergenic | 50.0% |
| !! | GCAAAGGTACCTACCATGAG+AGG | - | Chr4:28422204-28422223 | None:intergenic | 50.0% |
| AGTGTCCTTGCGTTTCACGG+TGG | + | Chr4:28422304-28422323 | MsG0480019848.01.T01:CDS | 55.0% | |
| ATCTTGGAACCAGCGGTCCA+AGG | + | Chr4:28421442-28421461 | MsG0480019848.01.T01:CDS | 55.0% | |
| CTGCCAGTGTCTTTGTGACC+GGG | - | Chr4:28421913-28421932 | None:intergenic | 55.0% | |
| GCCTAGCACATCAGATGCAG+TGG | - | Chr4:28422035-28422054 | None:intergenic | 55.0% | |
| GTACCCGGTCACAAAGACAC+TGG | + | Chr4:28421907-28421926 | MsG0480019848.01.T01:intron | 55.0% | |
| GTGAACCACCGTGAAACGCA+AGG | - | Chr4:28422312-28422331 | None:intergenic | 55.0% | |
| TTTAGCGTACCTTGGACCGC+TGG | - | Chr4:28421454-28421473 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 28421081 | 28422355 | 28421081 | ID=MsG0480019848.01;Name=MsG0480019848.01 |
| Chr4 | mRNA | 28421081 | 28422355 | 28421081 | ID=MsG0480019848.01.T01;Parent=MsG0480019848.01;Name=MsG0480019848.01.T01;_AED=0.41;_eAED=0.41;_QI=0|0|0|1|0.5|0.33|3|0|142 |
| Chr4 | exon | 28421081 | 28421278 | 28421081 | ID=MsG0480019848.01.T01:exon:9344;Parent=MsG0480019848.01.T01 |
| Chr4 | exon | 28421436 | 28421463 | 28421436 | ID=MsG0480019848.01.T01:exon:9345;Parent=MsG0480019848.01.T01 |
| Chr4 | exon | 28422153 | 28422355 | 28422153 | ID=MsG0480019848.01.T01:exon:9346;Parent=MsG0480019848.01.T01 |
| Chr4 | CDS | 28421081 | 28421278 | 28421081 | ID=MsG0480019848.01.T01:cds;Parent=MsG0480019848.01.T01 |
| Chr4 | CDS | 28421436 | 28421463 | 28421436 | ID=MsG0480019848.01.T01:cds;Parent=MsG0480019848.01.T01 |
| Chr4 | CDS | 28422153 | 28422355 | 28422153 | ID=MsG0480019848.01.T01:cds;Parent=MsG0480019848.01.T01 |
| Gene Sequence |
| Protein sequence |
