AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020853.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020853.01.T01 MTR_4g061090 90.423 449 7 1 1 413 11 459 0.0 822
MsG0480020853.01.T01 MTR_2g093210 76.222 450 67 3 1 413 11 457 0.0 681
MsG0480020853.01.T01 MTR_2g093210 76.222 450 67 3 1 413 11 457 0.0 681
MsG0480020853.01.T01 MTR_2g093210 76.222 450 67 3 1 413 11 457 0.0 680
MsG0480020853.01.T01 MTR_2g093210 75.000 412 63 3 39 413 9 417 0.0 611
MsG0480020853.01.T01 MTR_4g071070 51.339 448 179 4 1 412 14 458 3.65e-156 461
MsG0480020853.01.T01 MTR_3g112500 49.778 450 187 4 1 413 1 448 2.68e-148 438
MsG0480020853.01.T01 MTR_2g438500 66.667 45 15 0 1 45 11 55 4.39e-13 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020853.01.T01 AT2G28520 68.444 450 103 3 1 413 11 458 0.0 581
MsG0480020853.01.T01 AT4G39080 50.889 450 180 5 1 413 14 459 3.13e-156 461
MsG0480020853.01.T01 AT2G21410 50.554 451 180 7 1 413 15 460 2.03e-147 439

Find 86 sgRNAs with CRISPR-Local

Find 384 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATCTACAATTTCTTGATA+TGG 0.247157 4:-49695118 None:intergenic
CTGAAAATTTGTGAAGCTTT+TGG 0.275431 4:+49693698 MsG0480020853.01.T01:CDS
ATCGCGCCTTGCTGACTTAG+AGG 0.286780 4:+49694523 MsG0480020853.01.T01:CDS
AAAACCATCTCAGTTGAAAT+AGG 0.314216 4:-49693503 None:intergenic
CACCGAATCATCACCTATTT+AGG 0.336677 4:+49689110 MsG0480020853.01.T01:CDS
TGGGATTAGGCATCGGAATA+AGG 0.347557 4:+49694559 MsG0480020853.01.T01:CDS
TAGGAGGTCATTTAGCAAAA+TGG 0.353163 4:+49694594 MsG0480020853.01.T01:CDS
TTACTTATATCTTCAGGAAC+AGG 0.356092 4:-49693734 None:intergenic
CTTTATTGACCTGATCCATT+AGG 0.359465 4:-49692454 None:intergenic
CCTTTCAAACCTGAGAACTT+TGG 0.360456 4:-49693411 None:intergenic
CTTTGTTTACTTATATCTTC+AGG 0.370890 4:-49693740 None:intergenic
TTGCCTGCTGCTTGGAGCAT+TGG 0.373696 4:+49695386 MsG0480020853.01.T01:CDS
ACCGGCTGATGAGCAAATTA+TGG 0.379432 4:+49693478 MsG0480020853.01.T01:CDS
CAACTTTGGATGCTGGGATT+AGG 0.380654 4:+49694546 MsG0480020853.01.T01:CDS
TGCTGACTTAGAGGCAACTT+TGG 0.394715 4:+49694532 MsG0480020853.01.T01:CDS
TGCGGTGATGTTTGGCGACT+GGG 0.396749 4:+49695353 MsG0480020853.01.T01:CDS
TTGCGGTGATGTTTGGCGAC+TGG 0.401761 4:+49695352 MsG0480020853.01.T01:CDS
CCTGGTTAACAAATGTTCTC+TGG 0.402153 4:-49690950 None:intergenic
CATGGAATTTGCCTGCTGCT+TGG 0.408029 4:+49695378 MsG0480020853.01.T01:CDS
AAGACCGAGTTGGCCTAAAT+AGG 0.420717 4:-49689123 None:intergenic
AAGAAAGCTACGGTTCCTAA+TGG 0.421538 4:+49692439 MsG0480020853.01.T01:CDS
TTATAAATCTTAAACCAGAT+TGG 0.422718 4:-49693370 None:intergenic
TTTGTACAGGAAACGATGCC+TGG 0.425553 4:+49693332 MsG0480020853.01.T01:intron
GTTCAAAATTGTTCTGCAAA+AGG 0.425950 4:+49692753 MsG0480020853.01.T01:CDS
TTTGTAAATCCAAAGTTCTC+AGG 0.426855 4:+49693402 MsG0480020853.01.T01:CDS
ATAATAGTTGTGTAAACTGC+TGG 0.436616 4:-49695315 None:intergenic
CCATCAAAATCTAACCAATC+TGG 0.443170 4:+49693356 MsG0480020853.01.T01:CDS
TGAAAGGAAGCTCAGCAATC+AGG 0.445908 4:+49695422 MsG0480020853.01.T01:CDS
CCTTCATTCAATGGATGCAC+TGG 0.450088 4:+49695054 MsG0480020853.01.T01:CDS
ATGGATCAGGTCAATAAAGC+TGG 0.450542 4:+49692458 MsG0480020853.01.T01:CDS
ATGTTTGGCGACTGGGGTCA+TGG 0.458466 4:+49695360 MsG0480020853.01.T01:CDS
CCAGAGAACATTTGTTAACC+AGG 0.459096 4:+49690950 MsG0480020853.01.T01:CDS
TAGAGGCAACTTTGGATGCT+GGG 0.459606 4:+49694540 MsG0480020853.01.T01:CDS
CTGGTTTAAGATTTATAAGC+GGG 0.472941 4:+49693375 MsG0480020853.01.T01:CDS
CAAGAAATTGTAGATGCATA+CGG 0.479666 4:+49695124 MsG0480020853.01.T01:CDS
TTAGAGGCAACTTTGGATGC+TGG 0.483664 4:+49694539 MsG0480020853.01.T01:CDS
CAGTTCTCTCTCTTCTGAAA+CGG 0.484945 4:-49693141 None:intergenic
TTGAACGAATGTCATCTTCT+CGG 0.485629 4:-49689063 None:intergenic
CCAGTGCATCCATTGAATGA+AGG 0.486632 4:-49695054 None:intergenic
GGCCTAAATAGGTGATGATT+CGG 0.486922 4:-49689112 None:intergenic
CCAAAGTTCTCAGGTTTGAA+AGG 0.494490 4:+49693411 MsG0480020853.01.T01:CDS
CTTGCAATCAGATACATACT+TGG 0.497578 4:+49692502 MsG0480020853.01.T01:CDS
TATCTGATTGCAAGACAGAA+TGG 0.498874 4:-49692493 None:intergenic
CGTTTCAGAAGAGAGAGAAC+TGG 0.499370 4:+49693142 MsG0480020853.01.T01:CDS
GGATCCTATTTCAACTGAGA+TGG 0.501291 4:+49693499 MsG0480020853.01.T01:CDS
GCTACGGTTCCTAATGGATC+AGG 0.503423 4:+49692445 MsG0480020853.01.T01:CDS
GAACCAATGCTCCAAGCAGC+AGG 0.514977 4:-49695389 None:intergenic
ATTCGGTGAGCGGACTCAGC+GGG 0.515932 4:-49689095 None:intergenic
TAACAAATGTTCTCTGGAAG+GGG 0.525703 4:-49690944 None:intergenic
TACATACTTGGAGGATATAG+AGG 0.538894 4:+49692514 MsG0480020853.01.T01:CDS
TTAACAAATGTTCTCTGGAA+GGG 0.543625 4:-49690945 None:intergenic
TCCATAATTTGCTCATCAGC+CGG 0.544690 4:-49693479 None:intergenic
ATATGGATTTGTGAAACTGT+TGG 0.545071 4:-49695101 None:intergenic
GCAATCAGATACATACTTGG+AGG 0.551244 4:+49692505 MsG0480020853.01.T01:CDS
CTGTTGGTTCTAAAATATGT+AGG 0.554704 4:-49695085 None:intergenic
TACTTATATCTTCAGGAACA+GGG 0.558496 4:-49693733 None:intergenic
AATAAGGCTCTATCTTCTGT+AGG 0.561847 4:+49694575 MsG0480020853.01.T01:CDS
TTTGACAGCAATTCTCAAGT+GGG 0.564303 4:+49695025 MsG0480020853.01.T01:CDS
GTAAACAAAGGCAAATAACC+CGG 0.566335 4:+49693753 MsG0480020853.01.T01:CDS
AAGAAATTGTAGATGCATAC+GGG 0.568650 4:+49695125 MsG0480020853.01.T01:CDS
GTTAACAAATGTTCTCTGGA+AGG 0.571175 4:-49690946 None:intergenic
ATCTGATTGCAAGACAGAAT+GGG 0.571405 4:-49692492 None:intergenic
ATCACCTATTTAGGCCAACT+CGG 0.571758 4:+49689119 MsG0480020853.01.T01:CDS
TGGATGCTGGGATTAGGCAT+CGG 0.580692 4:+49694552 MsG0480020853.01.T01:CDS
TGGTTCTTATAGCACATGAA+AGG 0.580897 4:+49695406 MsG0480020853.01.T01:CDS
GAAAAGCATATTGCCTCTTG+TGG 0.583078 4:-49693447 None:intergenic
TGGATCAGGTCAATAAAGCT+GGG 0.585348 4:+49692459 MsG0480020853.01.T01:CDS
TTGACAGCAATTCTCAAGTG+GGG 0.586879 4:+49695026 MsG0480020853.01.T01:CDS
ATAGGTGATGATTCGGTGAG+CGG 0.591098 4:-49689105 None:intergenic
AGGTCATTTAGCAAAATGGA+TGG 0.593655 4:+49694598 MsG0480020853.01.T01:CDS
GAACGCATGAGATCCATTGA+AGG 0.595669 4:-49689041 None:intergenic
ATGTTGTTTCGTGCCACAAG+AGG 0.596841 4:+49693434 MsG0480020853.01.T01:CDS
TTCAGAAGAGAGAGAACTGG+AGG 0.604048 4:+49693145 MsG0480020853.01.T01:CDS
TGACAGCAATTCTCAAGTGG+GGG 0.606342 4:+49695027 MsG0480020853.01.T01:CDS
AAGGCTCTATCTTCTGTAGG+AGG 0.618034 4:+49694578 MsG0480020853.01.T01:CDS
CAGAAATGTCAAGAAAGCTA+CGG 0.623573 4:+49692429 MsG0480020853.01.T01:CDS
GAAATTGAAGAAGACCGAGT+TGG 0.632332 4:-49689133 None:intergenic
CTGAAGATATAAGTAAACAA+AGG 0.646221 4:+49693741 MsG0480020853.01.T01:CDS
TCTGGTTTAAGATTTATAAG+CGG 0.646579 4:+49693374 MsG0480020853.01.T01:CDS
TAAACAAAGGCAAATAACCC+GGG 0.647105 4:+49693754 MsG0480020853.01.T01:CDS
TTTAGCAAAATGGATGGACA+TGG 0.648626 4:+49694604 MsG0480020853.01.T01:CDS
GCGGTGATGTTTGGCGACTG+GGG 0.651684 4:+49695354 MsG0480020853.01.T01:CDS
TTGGTTCTAAAATATGTAGG+TGG 0.652091 4:-49695082 None:intergenic
AAGTTGCCTCTAAGTCAGCA+AGG 0.680382 4:-49694529 None:intergenic
GATTCGGTGAGCGGACTCAG+CGG 0.691576 4:-49689096 None:intergenic
ACAAAGGCAAATAACCCGGG+AGG 0.743957 4:+49693757 MsG0480020853.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAACGAAATA+TGG + Chr4:49689793-49689812 MsG0480020853.01.T01:intron 10.0%
!! ATTTAAAAAAATGCATAATT+TGG + Chr4:49693540-49693559 MsG0480020853.01.T01:intron 10.0%
!! TGAATATTAATTTATGATAA+AGG - Chr4:49693972-49693991 None:intergenic 10.0%
!!! AATATTTTTTAGAGTATTAT+GGG - Chr4:49692246-49692265 None:intergenic 10.0%
!!! TAATATTTTTTAGAGTATTA+TGG - Chr4:49692247-49692266 None:intergenic 10.0%
!!! TAATTGTATGAAAATATTTT+TGG - Chr4:49691656-49691675 None:intergenic 10.0%
!!! TTATTTTCTAAAATTATCAT+CGG - Chr4:49689423-49689442 None:intergenic 10.0%
!!! TTTGTTTCATTTTTTTATTT+AGG - Chr4:49694344-49694363 None:intergenic 10.0%
!! AAACAAATACAATTAAATGT+TGG - Chr4:49689577-49689596 None:intergenic 15.0%
!! ATAATCAAAAATAACTTAGT+AGG - Chr4:49690092-49690111 None:intergenic 15.0%
!! ATTTATTTAATAATCTCATC+AGG - Chr4:49691582-49691601 None:intergenic 15.0%
!! GTCTAAATAAATCTAAATAA+TGG + Chr4:49689610-49689629 MsG0480020853.01.T01:intron 15.0%
!! TAAAATAAAATCGAAAAACT+AGG - Chr4:49693287-49693306 None:intergenic 15.0%
!! TAATCAAAAATAACTTAGTA+GGG - Chr4:49690091-49690110 None:intergenic 15.0%
!! TAATTGAAAAATATAGTCTA+TGG + Chr4:49694489-49694508 MsG0480020853.01.T01:intron 15.0%
!! TAATTTAAGAAAACAAATCA+TGG + Chr4:49692191-49692210 MsG0480020853.01.T01:intron 15.0%
!! TTATAAATCATAGTTTCTAT+TGG - Chr4:49694472-49694491 None:intergenic 15.0%
!! TTTAACTAATAAATTGAGTA+AGG - Chr4:49691105-49691124 None:intergenic 15.0%
!!! ACATAAGAATATAGTTTTAT+GGG + Chr4:49693074-49693093 MsG0480020853.01.T01:intron 15.0%
!!! ACTATAATAATTTTTTGTAC+AGG + Chr4:49693319-49693338 MsG0480020853.01.T01:intron 15.0%
!!! TACATAAGAATATAGTTTTA+TGG + Chr4:49693073-49693092 MsG0480020853.01.T01:intron 15.0%
!!! TCTTTAATTGTTTTGTAATA+CGG + Chr4:49693818-49693837 MsG0480020853.01.T01:intron 15.0%
!!! TGATTTGTTTTCTTAAATTA+TGG - Chr4:49692191-49692210 None:intergenic 15.0%
!!! TTCATTTTTTTATTTAGGAT+TGG - Chr4:49694339-49694358 None:intergenic 15.0%
!! AAAACAATGAATAAATTGGT+GGG - Chr4:49693607-49693626 None:intergenic 20.0%
!! AAAATCTCTAATTTAGATGT+TGG + Chr4:49690838-49690857 MsG0480020853.01.T01:intron 20.0%
!! AATTATTATAGTGAACTTAG+AGG - Chr4:49693311-49693330 None:intergenic 20.0%
!! ATATAAAACAAAAAGACGAA+TGG - Chr4:49694943-49694962 None:intergenic 20.0%
!! ATATAAATATCCCAAATTTC+TGG + Chr4:49690781-49690800 MsG0480020853.01.T01:intron 20.0%
!! ATATTGATGTGACAATAAAA+TGG + Chr4:49691524-49691543 MsG0480020853.01.T01:intron 20.0%
!! CCATATTATATATCAAAAGA+TGG + Chr4:49691186-49691205 MsG0480020853.01.T01:intron 20.0%
!! GATTGGTATTCATATAAATT+GGG - Chr4:49694322-49694341 None:intergenic 20.0%
!! GTATTACAAAACAATTAAAG+AGG - Chr4:49693819-49693838 None:intergenic 20.0%
!! GTTCAAAACAATGAATAAAT+TGG - Chr4:49693611-49693630 None:intergenic 20.0%
!! TACTATAGTTAGTATTACAT+TGG - Chr4:49691420-49691439 None:intergenic 20.0%
!! TCACAGTAAAAAAATATCAA+GGG - Chr4:49693247-49693266 None:intergenic 20.0%
!! TTATAAATCTTAAACCAGAT+TGG - Chr4:49693373-49693392 None:intergenic 20.0%
!! TTCACAGTAAAAAAATATCA+AGG - Chr4:49693248-49693267 None:intergenic 20.0%
!! TTGAATACAATATCAATTGA+TGG - Chr4:49692985-49693004 None:intergenic 20.0%
!! TTGATATATAATATGGAGAT+TGG - Chr4:49691182-49691201 None:intergenic 20.0%
!!! ACTTTTCTAACTTAAACAAT+AGG - Chr4:49693893-49693912 None:intergenic 20.0%
!!! AGTTTGCAATATCATTTTTT+TGG + Chr4:49694044-49694063 MsG0480020853.01.T01:intron 20.0%
!!! ATCTGACATTTTTTAATTTG+TGG + Chr4:49692628-49692647 MsG0480020853.01.T01:intron 20.0%
!!! ATTGTATCTATGACTATTTT+AGG - Chr4:49694419-49694438 None:intergenic 20.0%
!!! ATTGTTTTGAACTTTTTTTC+AGG + Chr4:49693619-49693638 MsG0480020853.01.T01:intron 20.0%
!!! CACATACAAATTTTGAAAAT+AGG + Chr4:49689989-49690008 MsG0480020853.01.T01:intron 20.0%
!!! CCATCTTTTGATATATAATA+TGG - Chr4:49691189-49691208 None:intergenic 20.0%
!!! CTTTAATTGTTTTGTAATAC+GGG + Chr4:49693819-49693838 MsG0480020853.01.T01:intron 20.0%
!!! GAATTAGAAGTTTTAGTTAT+TGG - Chr4:49691906-49691925 None:intergenic 20.0%
!!! GTTTGCAATATCATTTTTTT+GGG + Chr4:49694045-49694064 MsG0480020853.01.T01:intron 20.0%
!!! TATATTTCTAACTTTGTGAA+AGG - Chr4:49695215-49695234 None:intergenic 20.0%
!!! TATCTGTATTTAGTTTGTTT+TGG + Chr4:49693573-49693592 MsG0480020853.01.T01:intron 20.0%
!!! TTGTATCTATGACTATTTTA+GGG - Chr4:49694418-49694437 None:intergenic 20.0%
!!! TTTCTTCCTTTTAAATTTTG+AGG + Chr4:49694906-49694925 MsG0480020853.01.T01:intron 20.0%
!!! TTTGCAATATCATTTTTTTG+GGG + Chr4:49694046-49694065 MsG0480020853.01.T01:intron 20.0%
! AAAATATAGTCTATGGTTAC+AGG + Chr4:49694496-49694515 MsG0480020853.01.T01:intron 25.0%
! AAAGAGAAGTAAAATAGAGA+AGG - Chr4:49692541-49692560 None:intergenic 25.0%
! AAAGGAAGAAATAATTACTG+AGG - Chr4:49694897-49694916 None:intergenic 25.0%
! AAGAAATAGGTTCAAACTTT+AGG + Chr4:49691209-49691228 MsG0480020853.01.T01:intron 25.0%
! AAGAAATTAGATAGAAGATG+TGG + Chr4:49691460-49691479 MsG0480020853.01.T01:intron 25.0%
! ATTACAACATATTGAACGAA+AGG - Chr4:49692598-49692617 None:intergenic 25.0%
! ATTCCAAAAAGTAAACAAAG+AGG - Chr4:49691024-49691043 None:intergenic 25.0%
! CAAAAACCTTATAAATCCTA+CGG - Chr4:49694217-49694236 None:intergenic 25.0%
! CAAAACAATGAATAAATTGG+TGG - Chr4:49693608-49693627 None:intergenic 25.0%
! CCAATATTAAGAATTGTCAA+TGG + Chr4:49694390-49694409 MsG0480020853.01.T01:intron 25.0%
! CCATTGACAATTCTTAATAT+TGG - Chr4:49694393-49694412 None:intergenic 25.0%
! CCATTGGTAAATATAAAAAC+AGG + Chr4:49694181-49694200 MsG0480020853.01.T01:intron 25.0%
! CTGAAGATATAAGTAAACAA+AGG + Chr4:49693741-49693760 MsG0480020853.01.T01:CDS 25.0%
! GGTACTAATAATTGTTTGAT+AGG - Chr4:49691885-49691904 None:intergenic 25.0%
! TACGAACAACAAACAAAAAA+AGG - Chr4:49689194-49689213 None:intergenic 25.0%
! TATAGTTAGTATTACATTGG+TGG - Chr4:49691417-49691436 None:intergenic 25.0%
! TATATCTAGTCCAAAAATAC+TGG - Chr4:49692327-49692346 None:intergenic 25.0%
! TATCAAAAGATGGAAGAAAT+AGG + Chr4:49691196-49691215 MsG0480020853.01.T01:intron 25.0%
! TATGGACATTGACAATAATT+AGG + Chr4:49691301-49691320 MsG0480020853.01.T01:intron 25.0%
! TCATGGAATATAATGAAGTT+TGG + Chr4:49692208-49692227 MsG0480020853.01.T01:intron 25.0%
! TTCCAAAAAGTAAACAAAGA+GGG - Chr4:49691023-49691042 None:intergenic 25.0%
!! AAACAAAATGCAGTTGATAT+TGG - Chr4:49692387-49692406 None:intergenic 25.0%
!! ACTTCAATGTTTTCTAATCT+CGG + Chr4:49690551-49690570 MsG0480020853.01.T01:intron 25.0%
!! ATGCTAACTATTTTCAAACA+GGG - Chr4:49692877-49692896 None:intergenic 25.0%
!! CTTTGTTTACTTATATCTTC+AGG - Chr4:49693743-49693762 None:intergenic 25.0%
!! GCTATAATAACCAGTATTTT+TGG + Chr4:49692314-49692333 MsG0480020853.01.T01:intron 25.0%
!! GGATTGGTATTCATATAAAT+TGG - Chr4:49694323-49694342 None:intergenic 25.0%
!! GTATGTCTAAAATAAGATAC+AGG - Chr4:49692163-49692182 None:intergenic 25.0%
!! TAGGTTCAATAGGATAATTT+TGG + Chr4:49690272-49690291 MsG0480020853.01.T01:intron 25.0%
!! TATATTCCCATTTCTTTTTG+CGG + Chr4:49695335-49695354 MsG0480020853.01.T01:CDS 25.0%
!! TCTGGTTTAAGATTTATAAG+CGG + Chr4:49693374-49693393 MsG0480020853.01.T01:CDS 25.0%
!! TGATCTTCAGTGAATTATTT+TGG + Chr4:49692026-49692045 MsG0480020853.01.T01:intron 25.0%
!! TTTGCCAATTTTTACTTATG+TGG - Chr4:49690405-49690424 None:intergenic 25.0%
!!! AACATGATTATTTTGTTTCC+TGG + Chr4:49690296-49690315 MsG0480020853.01.T01:intron 25.0%
!!! AGTTGAATTCTCAGTTTTAA+AGG - Chr4:49691738-49691757 None:intergenic 25.0%
!!! ATGTTTTTTTCAAACCAAAC+CGG + Chr4:49690065-49690084 MsG0480020853.01.T01:intron 25.0%
!!! CCTGTTTTTATATTTACCAA+TGG - Chr4:49694184-49694203 None:intergenic 25.0%
!!! CTGATAATGGTAAATTCTAT+TGG + Chr4:49690358-49690377 MsG0480020853.01.T01:intron 25.0%
!!! GTTGAATTCTCAGTTTTAAA+GGG - Chr4:49691737-49691756 None:intergenic 25.0%
!!! TCTTTGTTTACTTTTTGGAA+TGG + Chr4:49691023-49691042 MsG0480020853.01.T01:intron 25.0%
AAAACCATCTCAGTTGAAAT+AGG - Chr4:49693506-49693525 None:intergenic 30.0%
AAACAACATCAAGAACCTAA+AGG - Chr4:49694144-49694163 None:intergenic 30.0%
AAGAAATTGTAGATGCATAC+GGG + Chr4:49695125-49695144 MsG0480020853.01.T01:CDS 30.0%
AAGAACCATCTACATAACAT+AGG + Chr4:49690423-49690442 MsG0480020853.01.T01:intron 30.0%
AAGCAAATAAAGAAGACTCT+TGG - Chr4:49694013-49694032 None:intergenic 30.0%
AAGGAGTGAAGTGATAAAAA+GGG + Chr4:49691375-49691394 MsG0480020853.01.T01:intron 30.0%
AATAACGATTGAATGCTTGA+GGG + Chr4:49692108-49692127 MsG0480020853.01.T01:intron 30.0%
ATAATAGTTGTGTAAACTGC+TGG - Chr4:49695318-49695337 None:intergenic 30.0%
ATACTCCTATGTTATGTAGA+TGG - Chr4:49690431-49690450 None:intergenic 30.0%
ATATGGATTTGTGAAACTGT+TGG - Chr4:49695104-49695123 None:intergenic 30.0%
ATCGTTATTCATGATGAACA+TGG - Chr4:49692097-49692116 None:intergenic 30.0%
ATCTCTAATTTAGATGTTGG+AGG + Chr4:49690841-49690860 MsG0480020853.01.T01:intron 30.0%
CAAGAAATTGTAGATGCATA+CGG + Chr4:49695124-49695143 MsG0480020853.01.T01:CDS 30.0%
CATCACTTAGCATTAGTTAT+TGG + Chr4:49692909-49692928 MsG0480020853.01.T01:intron 30.0%
GAATTAATGCCAACTGAATT+TGG + Chr4:49691269-49691288 MsG0480020853.01.T01:intron 30.0%
GCAACTCCTCAAAATTTAAA+AGG - Chr4:49694915-49694934 None:intergenic 30.0%
GCATCTACAATTTCTTGATA+TGG - Chr4:49695121-49695140 None:intergenic 30.0%
GTGACCACATAAGTAAAAAT+TGG + Chr4:49690398-49690417 MsG0480020853.01.T01:intron 30.0%
GTTCAAAATTGTTCTGCAAA+AGG + Chr4:49692753-49692772 MsG0480020853.01.T01:CDS 30.0%
TAAGGAGTGAAGTGATAAAA+AGG + Chr4:49691374-49691393 MsG0480020853.01.T01:intron 30.0%
TACTTATATCTTCAGGAACA+GGG - Chr4:49693736-49693755 None:intergenic 30.0%
TATTCATGATGAACATGGAT+GGG - Chr4:49692092-49692111 None:intergenic 30.0%
TCCAGTCTCTATATAATACA+GGG + Chr4:49693858-49693877 MsG0480020853.01.T01:intron 30.0%
TGAAAACCGTAGGATTTATA+AGG + Chr4:49694208-49694227 MsG0480020853.01.T01:intron 30.0%
TGACAATAATTAGGTAGAAG+AGG + Chr4:49691310-49691329 MsG0480020853.01.T01:intron 30.0%
TGAGGATCAAACAAATTTGA+CGG - Chr4:49694879-49694898 None:intergenic 30.0%
TTACTTATATCTTCAGGAAC+AGG - Chr4:49693737-49693756 None:intergenic 30.0%
TTATGTTTAGACTTTGTTCG+TGG + Chr4:49691065-49691084 MsG0480020853.01.T01:intron 30.0%
TTATTCATGATGAACATGGA+TGG - Chr4:49692093-49692112 None:intergenic 30.0%
TTGACTAAATAGTAGCAAGA+TGG + Chr4:49691769-49691788 MsG0480020853.01.T01:intron 30.0%
TTTAAAGGGTTCATTCTTGA+GGG - Chr4:49691723-49691742 None:intergenic 30.0%
TTTCAACCAACTCTTCTAAA+AGG - Chr4:49691807-49691826 None:intergenic 30.0%
TTTGTAAATCCAAAGTTCTC+AGG + Chr4:49693402-49693421 MsG0480020853.01.T01:CDS 30.0%
! AAAAAATGTCTTGTTGGAGA+GGG + Chr4:49694818-49694837 MsG0480020853.01.T01:intron 30.0%
! AATGCTGCATTGTTGAATTT+TGG + Chr4:49689296-49689315 MsG0480020853.01.T01:intron 30.0%
! AGGTTCAAACTTTAGGAAAT+AGG + Chr4:49691216-49691235 MsG0480020853.01.T01:intron 30.0%
! CATGCTAACTATTTTCAAAC+AGG - Chr4:49692878-49692897 None:intergenic 30.0%
! CGTAGGATTTATAAGGTTTT+TGG + Chr4:49694215-49694234 MsG0480020853.01.T01:intron 30.0%
! CTGAAAATTTGTGAAGCTTT+TGG + Chr4:49693698-49693717 MsG0480020853.01.T01:CDS 30.0%
! CTGGTTTAAGATTTATAAGC+GGG + Chr4:49693375-49693394 MsG0480020853.01.T01:CDS 30.0%
! GATTATTTTCTCATGTCACT+GGG + Chr4:49690106-49690125 MsG0480020853.01.T01:intron 30.0%
! GTATATGAGAGAGAGTATAT+AGG - Chr4:49693056-49693075 None:intergenic 30.0%
! TATATAATACAGGGCTTTTC+AGG + Chr4:49693867-49693886 MsG0480020853.01.T01:intron 30.0%
! TGATTATTTTCTCATGTCAC+TGG + Chr4:49690105-49690124 MsG0480020853.01.T01:intron 30.0%
! TTAACAAATGTTCTCTGGAA+GGG - Chr4:49690948-49690967 None:intergenic 30.0%
!! CTGTTGGTTCTAAAATATGT+AGG - Chr4:49695088-49695107 None:intergenic 30.0%
!! TCCTAACAAGCCATTTTATT+TGG + Chr4:49695264-49695283 MsG0480020853.01.T01:intron 30.0%
!! TGAATTTGGTGTATACGATA+TGG + Chr4:49691283-49691302 MsG0480020853.01.T01:intron 30.0%
!! TGGTTGATGAGTTGATAATT+TGG + Chr4:49689642-49689661 MsG0480020853.01.T01:intron 30.0%
!! TTACTTTTGAATCCCACATA+TGG - Chr4:49690762-49690781 None:intergenic 30.0%
!! TTGGTTCTAAAATATGTAGG+TGG - Chr4:49695085-49695104 None:intergenic 30.0%
!! TTTTAAAGGGTTCATTCTTG+AGG - Chr4:49691724-49691743 None:intergenic 30.0%
!!! CTGCATTTTGTTTTTTTGAC+AGG + Chr4:49692394-49692413 MsG0480020853.01.T01:intron 30.0%
!!! GATTTATAAGGTTTTTGGTC+AGG + Chr4:49694220-49694239 MsG0480020853.01.T01:intron 30.0%
!!! TAGTTTTATGGGCATATTTC+AGG + Chr4:49693085-49693104 MsG0480020853.01.T01:intron 30.0%
!!! TGTTTGTTGTGTTTTTCTCT+GGG + Chr4:49693654-49693673 MsG0480020853.01.T01:CDS 30.0%
!!! TTATTTTAAGTTGCATGCCA+GGG + Chr4:49693925-49693944 MsG0480020853.01.T01:intron 30.0%
!!! TTGAATTTTGGAATTTCGTG+CGG + Chr4:49689308-49689327 MsG0480020853.01.T01:intron 30.0%
AAATCTCTTCTTCAATGGCA+AGG - Chr4:49691835-49691854 None:intergenic 35.0%
AACATCACCGCAAAAAGAAA+TGG - Chr4:49695345-49695364 None:intergenic 35.0%
AATAAGGCTCTATCTTCTGT+AGG + Chr4:49694575-49694594 MsG0480020853.01.T01:CDS 35.0%
ACATCACCGCAAAAAGAAAT+GGG - Chr4:49695344-49695363 None:intergenic 35.0%
AGGTCATTTAGCAAAATGGA+TGG + Chr4:49694598-49694617 MsG0480020853.01.T01:CDS 35.0%
AGTTAAGAAATTGAAGTCCC+TGG - Chr4:49693945-49693964 None:intergenic 35.0%
ATAACGATTGAATGCTTGAG+GGG + Chr4:49692109-49692128 MsG0480020853.01.T01:intron 35.0%
ATCTGATTGCAAGACAGAAT+GGG - Chr4:49692495-49692514 None:intergenic 35.0%
ATGATCATTGTCCTATCCTA+GGG + Chr4:49692572-49692591 MsG0480020853.01.T01:intron 35.0%
ATTGCTGATACTGATATTGC+TGG - Chr4:49694081-49694100 None:intergenic 35.0%
CAAAAATAACTTAGTAGGGC+CGG - Chr4:49690087-49690106 None:intergenic 35.0%
CAAGGAAATCTCTTCTTCAA+TGG - Chr4:49691840-49691859 None:intergenic 35.0%
CAGAAATGTCAAGAAAGCTA+CGG + Chr4:49692429-49692448 MsG0480020853.01.T01:CDS 35.0%
CAGTTCTGTATATAGTATGC+TGG + Chr4:49690672-49690691 MsG0480020853.01.T01:intron 35.0%
CATTGAAGAAGAGATTTCCT+TGG + Chr4:49691838-49691857 MsG0480020853.01.T01:intron 35.0%
CCATCAAAATCTAACCAATC+TGG + Chr4:49693356-49693375 MsG0480020853.01.T01:CDS 35.0%
CTAAATAATGGTGTGAGAGT+TGG + Chr4:49689622-49689641 MsG0480020853.01.T01:intron 35.0%
CTTGCAATCAGATACATACT+TGG + Chr4:49692502-49692521 MsG0480020853.01.T01:CDS 35.0%
CTTTATTGACCTGATCCATT+AGG - Chr4:49692457-49692476 None:intergenic 35.0%
GAATAACGATTGAATGCTTG+AGG + Chr4:49692107-49692126 MsG0480020853.01.T01:intron 35.0%
GAATTCGTTGAATGTGTTTG+TGG + Chr4:49689219-49689238 MsG0480020853.01.T01:intron 35.0%
GAGAAAAATAGTAGACTGAG+TGG + Chr4:49694117-49694136 MsG0480020853.01.T01:intron 35.0%
GATCTGGATCTCAATATTTC+AGG + Chr4:49690509-49690528 MsG0480020853.01.T01:intron 35.0%
GGAACCTGTTCAAACAAAAA+TGG - Chr4:49693206-49693225 None:intergenic 35.0%
GTAAACAAAGGCAAATAACC+CGG + Chr4:49693753-49693772 MsG0480020853.01.T01:CDS 35.0%
GTCACCAAAAAATGTCTTGT+TGG + Chr4:49694812-49694831 MsG0480020853.01.T01:intron 35.0%
GTCCAGTCTCTATATAATAC+AGG + Chr4:49693857-49693876 MsG0480020853.01.T01:intron 35.0%
GTTAACAAATGTTCTCTGGA+AGG - Chr4:49690949-49690968 None:intergenic 35.0%
GTTCAATTGCTGCTCTAATA+TGG + Chr4:49692941-49692960 MsG0480020853.01.T01:intron 35.0%
TAAACAAAGGCAAATAACCC+GGG + Chr4:49693754-49693773 MsG0480020853.01.T01:CDS 35.0%
TACATACTTGGAGGATATAG+AGG + Chr4:49692514-49692533 MsG0480020853.01.T01:CDS 35.0%
TACGTTGCATGCTAAATGTT+TGG + Chr4:49689690-49689709 MsG0480020853.01.T01:intron 35.0%
TAGAAGAGGATGTATATGGT+TGG + Chr4:49691324-49691343 MsG0480020853.01.T01:intron 35.0%
TAGGAGGTCATTTAGCAAAA+TGG + Chr4:49694594-49694613 MsG0480020853.01.T01:CDS 35.0%
TAGGTAGAAGAGGATGTATA+TGG + Chr4:49691320-49691339 MsG0480020853.01.T01:intron 35.0%
TATACTGCTGCTACTGATAA+TGG + Chr4:49690345-49690364 MsG0480020853.01.T01:intron 35.0%
TATCTGATTGCAAGACAGAA+TGG - Chr4:49692496-49692515 None:intergenic 35.0%
TATCTTTGATCATCGTTCCA+AGG - Chr4:49691858-49691877 None:intergenic 35.0%
TATGATCATTGTCCTATCCT+AGG + Chr4:49692571-49692590 MsG0480020853.01.T01:intron 35.0%
TATTCTCTCAGACATTTCAC+CGG + Chr4:49690576-49690595 MsG0480020853.01.T01:intron 35.0%
TCAACAAATCTCTTCTTCCT+TGG - Chr4:49692003-49692022 None:intergenic 35.0%
TCGTATACACCAAATTCAGT+TGG - Chr4:49691281-49691300 None:intergenic 35.0%
TCTGAATGACTTCTTGTCTA+AGG + Chr4:49694639-49694658 MsG0480020853.01.T01:intron 35.0%
TGAAGTGATAAAAAGGGAGA+GGG + Chr4:49691381-49691400 MsG0480020853.01.T01:intron 35.0%
TGAATATTTCCTAACTCGCA+TGG - Chr4:49690712-49690731 None:intergenic 35.0%
TGCAACACTGCCAAATAAAA+TGG - Chr4:49695277-49695296 None:intergenic 35.0%
TGGTTCTTATAGCACATGAA+AGG + Chr4:49695406-49695425 MsG0480020853.01.T01:CDS 35.0%
TTAAAGGGTTCATTCTTGAG+GGG - Chr4:49691722-49691741 None:intergenic 35.0%
TTGAACGAATGTCATCTTCT+CGG - Chr4:49689066-49689085 None:intergenic 35.0%
TTTAGACTTTGTTCGTGGTT+GGG + Chr4:49691070-49691089 MsG0480020853.01.T01:intron 35.0%
TTTAGCAAAATGGATGGACA+TGG + Chr4:49694604-49694623 MsG0480020853.01.T01:CDS 35.0%
TTTCAACTGTTAACAGCACA+TGG - Chr4:49695241-49695260 None:intergenic 35.0%
TTTGACAGCAATTCTCAAGT+GGG + Chr4:49695025-49695044 MsG0480020853.01.T01:CDS 35.0%
! AACTTTGGTGTAGGTTCAAT+AGG + Chr4:49690262-49690281 MsG0480020853.01.T01:intron 35.0%
! ACCTGTGCTTTTGCAAATAT+CGG - Chr4:49694851-49694870 None:intergenic 35.0%
! ACGTGCATCTTTGAAAACAT+AGG - Chr4:49689769-49689788 None:intergenic 35.0%
! AGGCAATATGCTTTTCAATC+AGG + Chr4:49693454-49693473 MsG0480020853.01.T01:CDS 35.0%
! CAAAAAATGTCTTGTTGGAG+AGG + Chr4:49694817-49694836 MsG0480020853.01.T01:intron 35.0%
! CCATATGCTCTCTGTTATTT+AGG + Chr4:49692838-49692857 MsG0480020853.01.T01:intron 35.0%
! CCTAAATAACAGAGAGCATA+TGG - Chr4:49692841-49692860 None:intergenic 35.0%
! GCAGAACAATTTTGAACTCA+AGG - Chr4:49692750-49692769 None:intergenic 35.0%
! GGCATTAATTCTAGAAAGAG+AGG - Chr4:49691260-49691279 None:intergenic 35.0%
! TAACAAATGTTCTCTGGAAG+GGG - Chr4:49690947-49690966 None:intergenic 35.0%
! TAGAGTATTATGGGTGATCT+TGG - Chr4:49692237-49692256 None:intergenic 35.0%
! TATGAGAGAGAGTATATAGG+AGG - Chr4:49693053-49693072 None:intergenic 35.0%
! TCTTCTGATTTTCCAGATTC+AGG + Chr4:49694982-49695001 MsG0480020853.01.T01:intron 35.0%
! TTCAAGTACTTGGTGAAGAT+GGG + Chr4:49690131-49690150 MsG0480020853.01.T01:intron 35.0%
! TTTCAAGTACTTGGTGAAGA+TGG + Chr4:49690130-49690149 MsG0480020853.01.T01:intron 35.0%
! TTTCTTTTTGCGGTGATGTT+TGG + Chr4:49695345-49695364 MsG0480020853.01.T01:CDS 35.0%
! TTTTGACAGCAATTCTCAAG+TGG + Chr4:49695024-49695043 MsG0480020853.01.T01:CDS 35.0%
!! CCAGATTGGTTAGATTTTGA+TGG - Chr4:49693359-49693378 None:intergenic 35.0%
!! CCTTGTTTAACTTGTTGAGA+GGG + Chr4:49690168-49690187 MsG0480020853.01.T01:intron 35.0%
!! GCCAAATAAAATGGCTTGTT+AGG - Chr4:49695268-49695287 None:intergenic 35.0%
!! GTATAGTTAAAGTGCTGTAC+AGG + Chr4:49690447-49690466 MsG0480020853.01.T01:intron 35.0%
!! TCCTTGTTTAACTTGTTGAG+AGG + Chr4:49690167-49690186 MsG0480020853.01.T01:intron 35.0%
!! TGCCCTCTTTGTTTACTTTT+TGG + Chr4:49691018-49691037 MsG0480020853.01.T01:intron 35.0%
!! TGGTGTTGTTTGAATTGTGT+GGG + Chr4:49689239-49689258 MsG0480020853.01.T01:intron 35.0%
!! TTAATGCAGTGTTGATTACC+TGG - Chr4:49690971-49690990 None:intergenic 35.0%
!!! AAGGTTTTTGGTCAGGAAAT+TGG + Chr4:49694227-49694246 MsG0480020853.01.T01:intron 35.0%
!!! CTCTCCAACAAGACATTTTT+TGG - Chr4:49694819-49694838 None:intergenic 35.0%
!!! GTGTTTGTTGTGTTTTTCTC+TGG + Chr4:49693653-49693672 MsG0480020853.01.T01:CDS 35.0%
!!! GTTATTTTAAGTTGCATGCC+AGG + Chr4:49693924-49693943 MsG0480020853.01.T01:intron 35.0%
!!! GTTTGTTGTGTTTTTCTCTG+GGG + Chr4:49693655-49693674 MsG0480020853.01.T01:CDS 35.0%
!!! TCTGCAAAAGGTATTTTCCA+TGG + Chr4:49692765-49692784 MsG0480020853.01.T01:intron 35.0%
!!! TGAATTTTGGAATTTCGTGC+GGG + Chr4:49689309-49689328 MsG0480020853.01.T01:intron 35.0%
AACAGGAAGTTGAAAACCGT+AGG + Chr4:49694198-49694217 MsG0480020853.01.T01:intron 40.0%
AAGAAAGCTACGGTTCCTAA+TGG + Chr4:49692439-49692458 MsG0480020853.01.T01:CDS 40.0%
AATATGCTACCATGCGAGTT+AGG + Chr4:49690700-49690719 MsG0480020853.01.T01:intron 40.0%
AGAGATGCTAAATGCTTCAC+TGG + Chr4:49689530-49689549 MsG0480020853.01.T01:intron 40.0%
AGTTGGACACAACTTCAATC+TGG + Chr4:49689944-49689963 MsG0480020853.01.T01:intron 40.0%
ATATGACTGCATGTCACCAT+TGG + Chr4:49694165-49694184 MsG0480020853.01.T01:intron 40.0%
ATCACCTATTTAGGCCAACT+CGG + Chr4:49689119-49689138 MsG0480020853.01.T01:CDS 40.0%
ATGACAAGGATGAGAGCTAT+TGG - Chr4:49694731-49694750 None:intergenic 40.0%
ATGGATCAGGTCAATAAAGC+TGG + Chr4:49692458-49692477 MsG0480020853.01.T01:CDS 40.0%
ATTCTCTCAGACATTTCACC+GGG + Chr4:49690577-49690596 MsG0480020853.01.T01:intron 40.0%
CACACAATCAGAATCTAACC+AGG - Chr4:49690317-49690336 None:intergenic 40.0%
CACCGAATCATCACCTATTT+AGG + Chr4:49689110-49689129 MsG0480020853.01.T01:CDS 40.0%
CCAAAGTTCTCAGGTTTGAA+AGG + Chr4:49693411-49693430 MsG0480020853.01.T01:CDS 40.0%
CCCTCTCAACAAGTTAAACA+AGG - Chr4:49690171-49690190 None:intergenic 40.0%
CCTGGTTAACAAATGTTCTC+TGG - Chr4:49690953-49690972 None:intergenic 40.0%
CCTTTCAAACCTGAGAACTT+TGG - Chr4:49693414-49693433 None:intergenic 40.0%
CGTGTTGGACATTTGATTAG+AGG + Chr4:49689495-49689514 MsG0480020853.01.T01:intron 40.0%
GAAATTGAAGAAGACCGAGT+TGG - Chr4:49689136-49689155 None:intergenic 40.0%
GCAATCAGATACATACTTGG+AGG + Chr4:49692505-49692524 MsG0480020853.01.T01:CDS 40.0%
GCCCTGTATTATATAGAGAC+TGG - Chr4:49693862-49693881 None:intergenic 40.0%
GGATCCTATTTCAACTGAGA+TGG + Chr4:49693499-49693518 MsG0480020853.01.T01:CDS 40.0%
GGCCTAAATAGGTGATGATT+CGG - Chr4:49689115-49689134 None:intergenic 40.0%
GGGTGGTAAACCAGAAATTT+GGG - Chr4:49690794-49690813 None:intergenic 40.0%
GTGAAGTGATAAAAAGGGAG+AGG + Chr4:49691380-49691399 MsG0480020853.01.T01:intron 40.0%
GTTTAGACTTTGTTCGTGGT+TGG + Chr4:49691069-49691088 MsG0480020853.01.T01:intron 40.0%
TATAGAGACTGGACCATACT+TGG - Chr4:49693851-49693870 None:intergenic 40.0%
TCTGTATATAGTATGCTGGC+TGG + Chr4:49690676-49690695 MsG0480020853.01.T01:intron 40.0%
TGGATAGTGTTGCATTACCA+AGG + Chr4:49691983-49692002 MsG0480020853.01.T01:intron 40.0%
TGGATCAGGTCAATAAAGCT+GGG + Chr4:49692459-49692478 MsG0480020853.01.T01:CDS 40.0%
TGGGTGGTAAACCAGAAATT+TGG - Chr4:49690795-49690814 None:intergenic 40.0%
TTACCTAGGACAAGATGACA+AGG - Chr4:49694745-49694764 None:intergenic 40.0%
TTGACAGCAATTCTCAAGTG+GGG + Chr4:49695026-49695045 MsG0480020853.01.T01:CDS 40.0%
TTGTTTGAACAGGTTCCTTG+AGG + Chr4:49693209-49693228 MsG0480020853.01.T01:intron 40.0%
! ACAACAAAACCTTTTCTCGC+TGG - Chr4:49690815-49690834 None:intergenic 40.0%
! AGCTAAGCATTTTTACCTCC+CGG - Chr4:49693775-49693794 None:intergenic 40.0%
! CAACAAAACCTTTTCTCGCT+GGG - Chr4:49690814-49690833 None:intergenic 40.0%
! CAGTTCTCTCTCTTCTGAAA+CGG - Chr4:49693144-49693163 None:intergenic 40.0%
! CCAGAGAACATTTGTTAACC+AGG + Chr4:49690950-49690969 MsG0480020853.01.T01:CDS 40.0%
! CTGTTGCATAACTTTGGTGT+AGG + Chr4:49690253-49690272 MsG0480020853.01.T01:intron 40.0%
! CTTTTGAATCCCACATATGG+CGG - Chr4:49690759-49690778 None:intergenic 40.0%
! GAAAAGCATATTGCCTCTTG+TGG - Chr4:49693450-49693469 None:intergenic 40.0%
! GCTTGTCGTGTTTGTTGATT+TGG + Chr4:49689364-49689383 MsG0480020853.01.T01:intron 40.0%
! TATGCTTTTCAATCAGGCAC+CGG + Chr4:49693460-49693479 MsG0480020853.01.T01:CDS 40.0%
! TCAAGTACTTGGTGAAGATG+GGG + Chr4:49690132-49690151 MsG0480020853.01.T01:intron 40.0%
! TCACTGGGATTTCAAGTACT+TGG + Chr4:49690121-49690140 MsG0480020853.01.T01:intron 40.0%
! TCCGATATTTGCAAAAGCAC+AGG + Chr4:49694847-49694866 MsG0480020853.01.T01:intron 40.0%
! TCTCTTTTACCGCCATATGT+GGG + Chr4:49690747-49690766 MsG0480020853.01.T01:intron 40.0%
! TTCTCTTTTACCGCCATATG+TGG + Chr4:49690746-49690765 MsG0480020853.01.T01:intron 40.0%
!! ATATGGTTGGCTTTGTGGTT+GGG + Chr4:49691337-49691356 MsG0480020853.01.T01:intron 40.0%
!! GAGGGCATTGAAAAAGAAAC+AGG - Chr4:49691005-49691024 None:intergenic 40.0%
!! GATGTATATGGTTGGCTTTG+TGG + Chr4:49691332-49691351 MsG0480020853.01.T01:intron 40.0%
!! GTGGTGTTGTTTGAATTGTG+TGG + Chr4:49689238-49689257 MsG0480020853.01.T01:intron 40.0%
!! TATATGGTTGGCTTTGTGGT+TGG + Chr4:49691336-49691355 MsG0480020853.01.T01:intron 40.0%
!! TCACTCGAGGCATCTTTTTA+AGG - Chr4:49691946-49691965 None:intergenic 40.0%
!! TCCATAATTTGCTCATCAGC+CGG - Chr4:49693482-49693501 None:intergenic 40.0%
!! TGAGCACCTTTTAGAAGAGT+TGG + Chr4:49691798-49691817 MsG0480020853.01.T01:intron 40.0%
!! TGGTTAGATTTTGATGGTCC+AGG - Chr4:49693353-49693372 None:intergenic 40.0%
!! TTGTTTTGTAATACGGGCCA+CGG + Chr4:49693825-49693844 MsG0480020853.01.T01:intron 40.0%
!!! GACGCCATTTTTGTTTGAAC+AGG + Chr4:49693199-49693218 MsG0480020853.01.T01:CDS 40.0%
!!! TTTGGGTTTTGACTTCCAAC+TGG + Chr4:49690197-49690216 MsG0480020853.01.T01:intron 40.0%
AAAGTTATGCAACAGCGCCA+TGG - Chr4:49690248-49690267 None:intergenic 45.0%
AAGGCTCTATCTTCTGTAGG+AGG + Chr4:49694578-49694597 MsG0480020853.01.T01:CDS 45.0%
AAGTTATGCAACAGCGCCAT+GGG - Chr4:49690247-49690266 None:intergenic 45.0%
AAGTTGCCTCTAAGTCAGCA+AGG - Chr4:49694532-49694551 None:intergenic 45.0%
ACCGGCTGATGAGCAAATTA+TGG + Chr4:49693478-49693497 MsG0480020853.01.T01:CDS 45.0%
AGCCTTCTCTCTTCTTACCT+AGG - Chr4:49694759-49694778 None:intergenic 45.0%
AGTAGACTGAGTGGACCTTT+AGG + Chr4:49694126-49694145 MsG0480020853.01.T01:intron 45.0%
ATAACTTAGTAGGGCCGGTT+TGG - Chr4:49690082-49690101 None:intergenic 45.0%
ATGCTCAGCACAAATAGCCA+TGG - Chr4:49692785-49692804 None:intergenic 45.0%
ATGGCGCTGTTGCATAACTT+TGG + Chr4:49690247-49690266 MsG0480020853.01.T01:intron 45.0%
CAACTTTGGATGCTGGGATT+AGG + Chr4:49694546-49694565 MsG0480020853.01.T01:CDS 45.0%
CATATTGAACGAAAGGCCCT+AGG - Chr4:49692591-49692610 None:intergenic 45.0%
CATCCTTGTCATCTTGTCCT+AGG + Chr4:49694739-49694758 MsG0480020853.01.T01:intron 45.0%
CATGATGAACATGGATGGGA+AGG - Chr4:49692088-49692107 None:intergenic 45.0%
CCAGTGCATCCATTGAATGA+AGG - Chr4:49695057-49695076 None:intergenic 45.0%
CCTTCATTCAATGGATGCAC+TGG + Chr4:49695054-49695073 MsG0480020853.01.T01:CDS 45.0%
CGCGAAAATCGATATGCGTA+AGG - Chr4:49689171-49689190 None:intergenic 45.0%
CGTTTCAGAAGAGAGAGAAC+TGG + Chr4:49693142-49693161 MsG0480020853.01.T01:CDS 45.0%
GAACGCATGAGATCCATTGA+AGG - Chr4:49689044-49689063 None:intergenic 45.0%
GCAACACTATCCAACTCTTC+AGG - Chr4:49691976-49691995 None:intergenic 45.0%
GGGAAAAAAGAGATGCCTCA+AGG - Chr4:49693227-49693246 None:intergenic 45.0%
GTCCTAGGTAAGAAGAGAGA+AGG + Chr4:49694754-49694773 MsG0480020853.01.T01:intron 45.0%
TAGAGGCAACTTTGGATGCT+GGG + Chr4:49694540-49694559 MsG0480020853.01.T01:CDS 45.0%
TGAAAGGAAGCTCAGCAATC+AGG + Chr4:49695422-49695441 MsG0480020853.01.T01:CDS 45.0%
TGACAGCAATTCTCAAGTGG+GGG + Chr4:49695027-49695046 MsG0480020853.01.T01:CDS 45.0%
TGATTGTTCGCCTGAAGAGT+TGG + Chr4:49691963-49691982 MsG0480020853.01.T01:intron 45.0%
TGTCAAACTCCAACACACGT+CGG + Chr4:49689920-49689939 MsG0480020853.01.T01:intron 45.0%
TGTTGAGAGGGCTTCAGTTT+GGG + Chr4:49690180-49690199 MsG0480020853.01.T01:intron 45.0%
TTAGAGGCAACTTTGGATGC+TGG + Chr4:49694539-49694558 MsG0480020853.01.T01:CDS 45.0%
TTCAGAAGAGAGAGAACTGG+AGG + Chr4:49693145-49693164 MsG0480020853.01.T01:CDS 45.0%
TTGTTGAGAGGGCTTCAGTT+TGG + Chr4:49690179-49690198 MsG0480020853.01.T01:intron 45.0%
TTTGAGCCTAGAGTCTTGGT+TGG + Chr4:49690487-49690506 MsG0480020853.01.T01:intron 45.0%
TTTGTACAGGAAACGATGCC+TGG + Chr4:49693332-49693351 MsG0480020853.01.T01:intron 45.0%
! AAGACCGAGTTGGCCTAAAT+AGG - Chr4:49689126-49689145 None:intergenic 45.0%
! GCTAAGCATTTTTACCTCCC+GGG - Chr4:49693774-49693793 None:intergenic 45.0%
! GGATGGGAAGGTTCAGTTTT+TGG - Chr4:49692076-49692095 None:intergenic 45.0%
!! ATAGGTGATGATTCGGTGAG+CGG - Chr4:49689108-49689127 None:intergenic 45.0%
!! ATGTTGTTTCGTGCCACAAG+AGG + Chr4:49693434-49693453 MsG0480020853.01.T01:CDS 45.0%
!! TATGGTTGGCTTTGTGGTTG+GGG + Chr4:49691338-49691357 MsG0480020853.01.T01:intron 45.0%
!! TGCTGACTTAGAGGCAACTT+TGG + Chr4:49694532-49694551 MsG0480020853.01.T01:CDS 45.0%
!! TGGGATTAGGCATCGGAATA+AGG + Chr4:49694559-49694578 MsG0480020853.01.T01:CDS 45.0%
!!! TCTCTGGAAGGGGCTTTTTT+CGG - Chr4:49690937-49690956 None:intergenic 45.0%
!! ATAAATATTAGTATAAATAA+AGG - Chr4:49691556-49691575 None:intergenic 5.0%
ACAAAGGCAAATAACCCGGG+AGG + Chr4:49693757-49693776 MsG0480020853.01.T01:CDS 50.0%
ACGAGAGGTTCAATGCCAGT+TGG - Chr4:49690215-49690234 None:intergenic 50.0%
CATGCTCAGCAAGTTGTGTC+TGG - Chr4:49692666-49692685 None:intergenic 50.0%
CATGGAATTTGCCTGCTGCT+TGG + Chr4:49695378-49695397 MsG0480020853.01.T01:CDS 50.0%
CCAGATCCAACCAAGACTCT+AGG - Chr4:49690496-49690515 None:intergenic 50.0%
CCTAGAGTCTTGGTTGGATC+TGG + Chr4:49690493-49690512 MsG0480020853.01.T01:intron 50.0%
CTCGTTTGAGCCTAGAGTCT+TGG + Chr4:49690483-49690502 MsG0480020853.01.T01:intron 50.0%
GGGGGCAATCCTTCATTCAA+TGG + Chr4:49695045-49695064 MsG0480020853.01.T01:CDS 50.0%
GTGTCTGACATGACTCGTGT+TGG + Chr4:49689480-49689499 MsG0480020853.01.T01:intron 50.0%
GTTGCAGTGCATCCTGAATC+TGG - Chr4:49694997-49695016 None:intergenic 50.0%
GTTTACCACCCAGCGAGAAA+AGG + Chr4:49690803-49690822 MsG0480020853.01.T01:intron 50.0%
TGAACGAAAGGCCCTAGGAT+AGG - Chr4:49692586-49692605 None:intergenic 50.0%
TGGATGCTGGGATTAGGCAT+CGG + Chr4:49694552-49694571 MsG0480020853.01.T01:CDS 50.0%
TTCAGGCGAACAATCACTCG+AGG - Chr4:49691959-49691978 None:intergenic 50.0%
! AATGTCTTGTTGGAGAGGGC+TGG + Chr4:49694822-49694841 MsG0480020853.01.T01:intron 50.0%
! CAAAACCTTTTCTCGCTGGG+TGG - Chr4:49690811-49690830 None:intergenic 50.0%
! GCTACGGTTCCTAATGGATC+AGG + Chr4:49692445-49692464 MsG0480020853.01.T01:CDS 50.0%
ACCGGGAGAGAGGCTAAAAG+TGG + Chr4:49690594-49690613 MsG0480020853.01.T01:intron 55.0%
ATGTTTGGCGACTGGGGTCA+TGG + Chr4:49695360-49695379 MsG0480020853.01.T01:CDS 55.0%
CAGACATTTCACCGGGAGAG+AGG + Chr4:49690584-49690603 MsG0480020853.01.T01:intron 55.0%
CCGGGAGAGAGGCTAAAAGT+GGG + Chr4:49690595-49690614 MsG0480020853.01.T01:intron 55.0%
CGATTGAATGCTTGAGGGGC+AGG + Chr4:49692113-49692132 MsG0480020853.01.T01:intron 55.0%
CGGGAGAGAGGCTAAAAGTG+GGG + Chr4:49690596-49690615 MsG0480020853.01.T01:intron 55.0%
CTCCAACACACGTCGGAAGT+TGG + Chr4:49689927-49689946 MsG0480020853.01.T01:intron 55.0%
GAACCAATGCTCCAAGCAGC+AGG - Chr4:49695392-49695411 None:intergenic 55.0%
GTCCAACTTCCGACGTGTGT+TGG - Chr4:49689932-49689951 None:intergenic 55.0%
TGCGGTGATGTTTGGCGACT+GGG + Chr4:49695353-49695372 MsG0480020853.01.T01:CDS 55.0%
TTATGCAACAGCGCCATGGG+AGG - Chr4:49690244-49690263 None:intergenic 55.0%
TTGCGGTGATGTTTGGCGAC+TGG + Chr4:49695352-49695371 MsG0480020853.01.T01:CDS 55.0%
! TTGCCTGCTGCTTGGAGCAT+TGG + Chr4:49695386-49695405 MsG0480020853.01.T01:CDS 55.0%
!! ATCGCGCCTTGCTGACTTAG+AGG + Chr4:49694523-49694542 MsG0480020853.01.T01:CDS 55.0%
!! CCCACTTTTAGCCTCTCTCC+CGG - Chr4:49690598-49690617 None:intergenic 55.0%
!! GTTGGCTTTGTGGTTGGGGT+GGG + Chr4:49691342-49691361 MsG0480020853.01.T01:intron 55.0%
ATACGGGCCACGGCCAAGTA+TGG + Chr4:49693835-49693854 MsG0480020853.01.T01:intron 60.0%
CATGGGAGGCAGTGAACGAG+AGG - Chr4:49690230-49690249 None:intergenic 60.0%
CTCTCGTTCACTGCCTCCCA+TGG + Chr4:49690228-49690247 MsG0480020853.01.T01:intron 60.0%
GACTGGACCATACTTGGCCG+TGG - Chr4:49693845-49693864 None:intergenic 60.0%
GCGGTGATGTTTGGCGACTG+GGG + Chr4:49695354-49695373 MsG0480020853.01.T01:CDS 60.0%
GCTTTGTGGTTGGGGTGGGT+TGG + Chr4:49691346-49691365 MsG0480020853.01.T01:intron 60.0%
! ATTCGGTGAGCGGACTCAGC+GGG - Chr4:49689098-49689117 None:intergenic 60.0%
!! GATTCGGTGAGCGGACTCAG+CGG - Chr4:49689099-49689118 None:intergenic 60.0%
!! GGTTGGCTTTGTGGTTGGGG+TGG + Chr4:49691341-49691360 MsG0480020853.01.T01:intron 60.0%
!! TGGGGTGGGTTGGAGAGCTA+AGG + Chr4:49691356-49691375 MsG0480020853.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 49689029 49695458 49689029 ID=MsG0480020853.01;Name=MsG0480020853.01
Chr4 mRNA 49689029 49695458 49689029 ID=MsG0480020853.01.T01;Parent=MsG0480020853.01;Name=MsG0480020853.01.T01;_AED=0.46;_eAED=0.46;_QI=18|0.88|0.9|1|0.77|0.9|10|0|414
Chr4 exon 49689029 49689160 49689029 ID=MsG0480020853.01.T01:exon:16514;Parent=MsG0480020853.01.T01
Chr4 exon 49690927 49690971 49690927 ID=MsG0480020853.01.T01:exon:16515;Parent=MsG0480020853.01.T01
Chr4 exon 49692416 49692535 49692416 ID=MsG0480020853.01.T01:exon:16516;Parent=MsG0480020853.01.T01
Chr4 exon 49692667 49692774 49692667 ID=MsG0480020853.01.T01:exon:16517;Parent=MsG0480020853.01.T01
Chr4 exon 49693107 49693220 49693107 ID=MsG0480020853.01.T01:exon:16518;Parent=MsG0480020853.01.T01
Chr4 exon 49693341 49693520 49693341 ID=MsG0480020853.01.T01:exon:16519;Parent=MsG0480020853.01.T01
Chr4 exon 49693641 49693778 49693641 ID=MsG0480020853.01.T01:exon:16520;Parent=MsG0480020853.01.T01
Chr4 exon 49694518 49694625 49694518 ID=MsG0480020853.01.T01:exon:16521;Parent=MsG0480020853.01.T01
Chr4 exon 49694998 49695146 49694998 ID=MsG0480020853.01.T01:exon:16522;Parent=MsG0480020853.01.T01
Chr4 exon 49695290 49695458 49695290 ID=MsG0480020853.01.T01:exon:16523;Parent=MsG0480020853.01.T01
Chr4 five_prime_UTR 49689029 49689046 49689029 ID=MsG0480020853.01.T01:five_prime_utr;Parent=MsG0480020853.01.T01
Chr4 CDS 49689047 49689160 49689047 ID=MsG0480020853.01.T01:cds;Parent=MsG0480020853.01.T01
Chr4 CDS 49690927 49690971 49690927 ID=MsG0480020853.01.T01:cds;Parent=MsG0480020853.01.T01
Chr4 CDS 49692416 49692535 49692416 ID=MsG0480020853.01.T01:cds;Parent=MsG0480020853.01.T01
Chr4 CDS 49692667 49692774 49692667 ID=MsG0480020853.01.T01:cds;Parent=MsG0480020853.01.T01
Chr4 CDS 49693107 49693220 49693107 ID=MsG0480020853.01.T01:cds;Parent=MsG0480020853.01.T01
Chr4 CDS 49693341 49693520 49693341 ID=MsG0480020853.01.T01:cds;Parent=MsG0480020853.01.T01
Chr4 CDS 49693641 49693778 49693641 ID=MsG0480020853.01.T01:cds;Parent=MsG0480020853.01.T01
Chr4 CDS 49694518 49694625 49694518 ID=MsG0480020853.01.T01:cds;Parent=MsG0480020853.01.T01
Chr4 CDS 49694998 49695146 49694998 ID=MsG0480020853.01.T01:cds;Parent=MsG0480020853.01.T01
Chr4 CDS 49695290 49695458 49695290 ID=MsG0480020853.01.T01:cds;Parent=MsG0480020853.01.T01
Gene Sequence

>MsG0480020853.01.T01

ATGGATCTCATGCGTTCCGAGAAGATGACATTCGTTCAACTCATCATTCCCGCTGAGTCCGCTCACCGAATCATCACCTATTTAGGCCAACTCGGTCTTCTTCAATTTCGCGACTTAAATGCCGAAAAAAGCCCCTTCCAGAGAACATTTGTTAACCAGGTAAAGCGATGTGCAGAAATGTCAAGAAAGCTACGGTTCCTAATGGATCAGGTCAATAAAGCTGGGATAATGTCATCCCATTCTGTCTTGCAATCAGATACATACTTGGAGGATATAGAGACACAACTTGCTGAGCATGAACATGAGATAATTGAAATGAACTCTAACAGTGAGAAACTTCAGCAATCATATAACGAACTCCTTGAGTTCAAAATTGTTCTGCAAAAGGCATGTAATTTTCTTGTTTCAAGTCACGTACATGCCGTTTCAGAAGAGAGAGAACTGGAGGAAAATGTTTACTCAAATGAAGACTTCGTTGAGACGCCATTTTTGTTTGAACAGGAAACGATGCCTGGACCATCAAAATCTAACCAATCTGGTTTAAGATTTATAAGCGGGATAATTTGTAAATCCAAAGTTCTCAGGTTTGAAAGGATGTTGTTTCGTGCCACAAGAGGCAATATGCTTTTCAATCAGGCACCGGCTGATGAGCAAATTATGGATCCTATTTCAACTGAGATGGTTGAGAAAACTGTGTTTGTTGTGTTTTTCTCTGGGGAGCAAGCAAGAACGAAGATTCTGAAAATTTGTGAAGCTTTTGGTGCAAATTGTTACCCTGTTCCTGAAGATATAAGTAAACAAAGGCAAATAACCCGGGAGGTTTCATCGCGCCTTGCTGACTTAGAGGCAACTTTGGATGCTGGGATTAGGCATCGGAATAAGGCTCTATCTTCTGTAGGAGGTCATTTAGCAAAATGGATGGACATGATTCAGGATGCACTGCAACGTGCAACTTTTGACAGCAATTCTCAAGTGGGGGCAATCCTTCATTCAATGGATGCACTGGAATCGCCACCTACATATTTTAGAACCAACAGTTTCACAAATCCATATCAAGAAATTGTAGATGCATACGGTGTTGCAAGATATCAAGAAGCAAATCCAGCAGTTTACACAACTATTATATTCCCATTTCTTTTTGCGGTGATGTTTGGCGACTGGGGTCATGGAATTTGCCTGCTGCTTGGAGCATTGGTTCTTATAGCACATGAAAGGAAGCTCAGCAATCAGGTATTGTCATTCTAA
Protein sequence

>MsG0480020853.01.T01

MDLMRSEKMTFVQLIIPAESAHRIITYLGQLGLLQFRDLNAEKSPFQRTFVNQVKRCAEMSRKLRFLMDQVNKAGIMSSHSVLQSDTYLEDIETQLAEHEHEIIEMNSNSEKLQQSYNELLEFKIVLQKACNFLVSSHVHAVSEERELEENVYSNEDFVETPFLFEQETMPGPSKSNQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEQIMDPISTEMVEKTVFVVFFSGEQARTKILKICEAFGANCYPVPEDISKQRQITREVSSRLADLEATLDAGIRHRNKALSSVGGHLAKWMDMIQDALQRATFDSNSQVGAILHSMDALESPPTYFRTNSFTNPYQEIVDAYGVARYQEANPAVYTTIIFPFLFAVMFGDWGHGICLLLGALVLIAHERKLSNQVLSF*