Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020896.01.T02 | KEH30092.1 | 69.78 | 182 | 10 | 3 | 1 | 137 | 59 | 240 | 1.90E-66 | 211 |
| MsG0480020896.01.T04 | KEH30092.1 | 91.667 | 240 | 16 | 1 | 1 | 236 | 1 | 240 | 5.61E-149 | 424 |
| MsG0480020896.01.T01 | KEH30092.1 | 75 | 240 | 13 | 3 | 1 | 193 | 1 | 240 | 4.76E-109 | 322 |
| MsG0480020896.01.T03 | XP_013456061.2 | 91.246 | 297 | 22 | 1 | 1 | 293 | 5 | 301 | 2.10E-178 | 504 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020896.01.T01 | Q8LDS4 | 66.197 | 71 | 24 | 0 | 102 | 172 | 244 | 314 | 1.67E-25 | 103 |
| MsG0480020896.01.T02 | Q8LDS4 | 70.312 | 64 | 19 | 0 | 53 | 116 | 251 | 314 | 2.76E-26 | 103 |
| MsG0480020896.01.T03 | Q8LDS4 | 68.116 | 69 | 22 | 0 | 204 | 272 | 246 | 314 | 6.55E-26 | 107 |
| MsG0480020896.01.T04 | Q8LDS4 | 68.116 | 69 | 22 | 0 | 147 | 215 | 246 | 314 | 1.28E-26 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020896.01.T01 | A0A072UK61 | 75.000 | 240 | 13 | 3 | 1 | 193 | 1 | 240 | 2.27e-109 | 322 |
| MsG0480020896.01.T02 | A0A072UK61 | 69.780 | 182 | 10 | 3 | 1 | 137 | 59 | 240 | 9.06e-67 | 211 |
| MsG0480020896.01.T02 | A0A396I5K9 | 69.780 | 182 | 10 | 3 | 1 | 137 | 120 | 301 | 6.51e-66 | 211 |
| MsG0480020896.01.T03 | A0A396I5K9 | 91.246 | 297 | 22 | 1 | 1 | 293 | 5 | 301 | 1.01e-178 | 504 |
| MsG0480020896.01.T04 | A0A072UK61 | 91.667 | 240 | 16 | 1 | 1 | 236 | 1 | 240 | 2.68e-149 | 424 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180004025.01 | MsG0480020896.01 | 0.802163 | 6.391576e-49 | 3.109044e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020896.01.T02 | MTR_4g062450 | 69.780 | 182 | 10 | 3 | 1 | 137 | 59 | 240 | 2.30e-70 | 211 |
| MsG0480020896.01.T02 | MTR_1g067560 | 70.130 | 77 | 23 | 0 | 44 | 120 | 177 | 253 | 7.06e-32 | 114 |
| MsG0480020896.01.T02 | MTR_7g100450 | 61.842 | 76 | 29 | 0 | 53 | 128 | 210 | 285 | 1.60e-30 | 111 |
| MsG0480020896.01.T02 | MTR_8g103820 | 60.606 | 66 | 26 | 0 | 53 | 118 | 67 | 132 | 1.20e-24 | 92.0 |
| MsG0480020896.01.T02 | MTR_6g086020 | 55.385 | 65 | 29 | 0 | 53 | 117 | 66 | 130 | 1.40e-22 | 86.7 |
| MsG0480020896.01.T02 | MTR_7g013660 | 46.154 | 65 | 34 | 1 | 52 | 115 | 4 | 68 | 1.76e-14 | 65.9 |
| MsG0480020896.01.T02 | MTR_6g026890 | 36.250 | 80 | 50 | 1 | 38 | 116 | 2 | 81 | 5.42e-12 | 59.7 |
| MsG0480020896.01.T04 | MTR_4g062450 | 91.667 | 240 | 16 | 1 | 1 | 236 | 1 | 240 | 6.80e-153 | 424 |
| MsG0480020896.01.T04 | MTR_1g067560 | 37.165 | 261 | 114 | 8 | 1 | 219 | 1 | 253 | 1.99e-39 | 137 |
| MsG0480020896.01.T04 | MTR_7g100450 | 32.542 | 295 | 121 | 9 | 1 | 227 | 1 | 285 | 8.44e-34 | 123 |
| MsG0480020896.01.T04 | MTR_8g103820 | 59.420 | 69 | 28 | 0 | 149 | 217 | 64 | 132 | 1.20e-23 | 92.4 |
| MsG0480020896.01.T04 | MTR_6g086020 | 55.882 | 68 | 30 | 0 | 149 | 216 | 63 | 130 | 2.07e-22 | 89.4 |
| MsG0480020896.01.T04 | MTR_7g013660 | 46.154 | 65 | 34 | 1 | 151 | 214 | 4 | 68 | 9.61e-14 | 66.2 |
| MsG0480020896.01.T04 | MTR_7g100450 | 28.745 | 247 | 98 | 9 | 1 | 179 | 1 | 237 | 9.15e-13 | 66.2 |
| MsG0480020896.01.T01 | MTR_4g062450 | 75.000 | 240 | 13 | 3 | 1 | 193 | 1 | 240 | 5.76e-113 | 322 |
| MsG0480020896.01.T01 | MTR_1g067560 | 36.328 | 256 | 80 | 7 | 1 | 176 | 1 | 253 | 2.27e-34 | 122 |
| MsG0480020896.01.T01 | MTR_7g100450 | 60.256 | 78 | 31 | 0 | 107 | 184 | 208 | 285 | 1.32e-29 | 110 |
| MsG0480020896.01.T01 | MTR_8g103820 | 60.606 | 66 | 26 | 0 | 109 | 174 | 67 | 132 | 1.15e-23 | 91.3 |
| MsG0480020896.01.T01 | MTR_6g086020 | 55.385 | 65 | 29 | 0 | 109 | 173 | 66 | 130 | 1.20e-21 | 86.3 |
| MsG0480020896.01.T01 | MTR_7g013660 | 46.154 | 65 | 34 | 1 | 108 | 171 | 4 | 68 | 4.87e-14 | 66.2 |
| MsG0480020896.01.T01 | MTR_6g026890 | 36.250 | 80 | 50 | 1 | 94 | 172 | 2 | 81 | 1.96e-11 | 59.7 |
| MsG0480020896.01.T03 | MTR_4g062450 | 91.667 | 240 | 16 | 1 | 58 | 293 | 1 | 240 | 1.28e-151 | 424 |
| MsG0480020896.01.T03 | MTR_1g067560 | 37.165 | 261 | 114 | 8 | 58 | 276 | 1 | 253 | 1.59e-38 | 136 |
| MsG0480020896.01.T03 | MTR_7g100450 | 32.542 | 295 | 121 | 9 | 58 | 284 | 1 | 285 | 8.12e-33 | 122 |
| MsG0480020896.01.T03 | MTR_8g103820 | 59.420 | 69 | 28 | 0 | 206 | 274 | 64 | 132 | 3.52e-23 | 92.8 |
| MsG0480020896.01.T03 | MTR_6g086020 | 55.882 | 68 | 30 | 0 | 206 | 273 | 63 | 130 | 6.82e-22 | 89.4 |
| MsG0480020896.01.T03 | MTR_7g013660 | 46.154 | 65 | 34 | 1 | 208 | 271 | 4 | 68 | 1.63e-13 | 66.6 |
| MsG0480020896.01.T03 | MTR_7g100450 | 28.745 | 247 | 98 | 9 | 58 | 236 | 1 | 237 | 3.04e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020896.01.T02 | AT2G37390 | 45.000 | 120 | 45 | 2 | 21 | 119 | 128 | 247 | 1.34e-27 | 102 |
| MsG0480020896.01.T02 | AT2G37390 | 44.628 | 121 | 45 | 2 | 21 | 119 | 128 | 248 | 1.86e-27 | 102 |
| MsG0480020896.01.T02 | AT2G28660 | 71.429 | 63 | 18 | 0 | 53 | 115 | 184 | 246 | 1.87e-27 | 102 |
| MsG0480020896.01.T02 | AT5G02600 | 70.312 | 64 | 19 | 0 | 53 | 116 | 251 | 314 | 2.81e-27 | 103 |
| MsG0480020896.01.T02 | AT5G02600 | 70.312 | 64 | 19 | 0 | 53 | 116 | 251 | 314 | 2.81e-27 | 103 |
| MsG0480020896.01.T02 | AT3G53530 | 64.615 | 65 | 21 | 1 | 53 | 115 | 169 | 233 | 2.75e-25 | 96.7 |
| MsG0480020896.01.T02 | AT3G53530 | 63.636 | 66 | 21 | 2 | 53 | 115 | 169 | 234 | 1.82e-23 | 92.0 |
| MsG0480020896.01.T02 | AT3G24450 | 41.748 | 103 | 51 | 2 | 18 | 117 | 43 | 139 | 4.83e-20 | 80.5 |
| MsG0480020896.01.T02 | AT5G27690 | 31.429 | 105 | 55 | 3 | 21 | 122 | 11 | 101 | 7.80e-14 | 67.4 |
| MsG0480020896.01.T02 | AT3G56891 | 38.750 | 80 | 48 | 1 | 38 | 116 | 2 | 81 | 1.13e-13 | 64.7 |
| MsG0480020896.01.T02 | AT1G66240 | 41.429 | 70 | 40 | 1 | 49 | 117 | 30 | 99 | 1.19e-13 | 63.2 |
| MsG0480020896.01.T02 | AT3G56240 | 44.118 | 68 | 37 | 1 | 50 | 116 | 1 | 68 | 2.65e-13 | 62.4 |
| MsG0480020896.01.T02 | AT3G56240 | 44.118 | 68 | 37 | 1 | 50 | 116 | 1 | 68 | 2.65e-13 | 62.4 |
| MsG0480020896.01.T04 | AT3G53530 | 35.714 | 252 | 105 | 11 | 1 | 214 | 1 | 233 | 9.50e-28 | 106 |
| MsG0480020896.01.T04 | AT5G02600 | 68.116 | 69 | 22 | 0 | 147 | 215 | 246 | 314 | 1.30e-27 | 107 |
| MsG0480020896.01.T04 | AT5G02600 | 68.116 | 69 | 22 | 0 | 147 | 215 | 246 | 314 | 1.30e-27 | 107 |
| MsG0480020896.01.T04 | AT2G28660 | 67.647 | 68 | 22 | 0 | 147 | 214 | 179 | 246 | 1.51e-27 | 106 |
| MsG0480020896.01.T04 | AT2G37390 | 44.882 | 127 | 62 | 3 | 92 | 218 | 130 | 248 | 2.08e-27 | 105 |
| MsG0480020896.01.T04 | AT2G37390 | 44.094 | 127 | 62 | 3 | 92 | 218 | 130 | 247 | 2.79e-27 | 105 |
| MsG0480020896.01.T04 | AT3G53530 | 35.573 | 253 | 105 | 12 | 1 | 214 | 1 | 234 | 5.81e-26 | 102 |
| MsG0480020896.01.T04 | AT3G24450 | 52.941 | 68 | 32 | 0 | 149 | 216 | 72 | 139 | 2.09e-19 | 81.6 |
| MsG0480020896.01.T04 | AT1G66240 | 35.714 | 98 | 60 | 2 | 122 | 216 | 2 | 99 | 3.97e-13 | 64.3 |
| MsG0480020896.01.T04 | AT3G56240 | 45.455 | 66 | 35 | 1 | 151 | 215 | 3 | 68 | 1.35e-12 | 63.2 |
| MsG0480020896.01.T04 | AT3G56240 | 45.455 | 66 | 35 | 1 | 151 | 215 | 3 | 68 | 1.35e-12 | 63.2 |
| MsG0480020896.01.T04 | AT5G27690 | 32.653 | 98 | 60 | 3 | 124 | 217 | 2 | 97 | 6.75e-12 | 64.7 |
| MsG0480020896.01.T01 | AT2G28660 | 71.429 | 63 | 18 | 0 | 109 | 171 | 184 | 246 | 1.48e-26 | 102 |
| MsG0480020896.01.T01 | AT5G02600 | 66.197 | 71 | 24 | 0 | 102 | 172 | 244 | 314 | 1.71e-26 | 103 |
| MsG0480020896.01.T01 | AT5G02600 | 66.197 | 71 | 24 | 0 | 102 | 172 | 244 | 314 | 1.71e-26 | 103 |
| MsG0480020896.01.T01 | AT2G37390 | 44.915 | 118 | 44 | 2 | 79 | 175 | 130 | 247 | 2.61e-26 | 101 |
| MsG0480020896.01.T01 | AT2G37390 | 44.538 | 119 | 44 | 2 | 79 | 175 | 130 | 248 | 3.12e-26 | 101 |
| MsG0480020896.01.T01 | AT3G53530 | 64.615 | 65 | 21 | 1 | 109 | 171 | 169 | 233 | 3.05e-24 | 95.9 |
| MsG0480020896.01.T01 | AT3G53530 | 63.636 | 66 | 21 | 2 | 109 | 171 | 169 | 234 | 1.76e-22 | 91.3 |
| MsG0480020896.01.T01 | AT3G24450 | 53.846 | 65 | 30 | 0 | 109 | 173 | 75 | 139 | 2.88e-19 | 80.1 |
| MsG0480020896.01.T01 | AT1G66240 | 41.429 | 70 | 40 | 1 | 105 | 173 | 30 | 99 | 3.68e-13 | 63.2 |
| MsG0480020896.01.T01 | AT3G56891 | 38.750 | 80 | 48 | 1 | 94 | 172 | 2 | 81 | 4.43e-13 | 64.7 |
| MsG0480020896.01.T01 | AT5G27690 | 29.730 | 111 | 61 | 3 | 83 | 190 | 17 | 113 | 5.98e-13 | 66.6 |
| MsG0480020896.01.T01 | AT3G56240 | 44.118 | 68 | 37 | 1 | 106 | 172 | 1 | 68 | 1.00e-12 | 62.8 |
| MsG0480020896.01.T01 | AT3G56240 | 44.118 | 68 | 37 | 1 | 106 | 172 | 1 | 68 | 1.00e-12 | 62.8 |
| MsG0480020896.01.T03 | AT3G53530 | 35.714 | 252 | 105 | 11 | 58 | 271 | 1 | 233 | 3.78e-27 | 106 |
| MsG0480020896.01.T03 | AT2G28660 | 67.647 | 68 | 22 | 0 | 204 | 271 | 179 | 246 | 5.43e-27 | 106 |
| MsG0480020896.01.T03 | AT5G02600 | 68.116 | 69 | 22 | 0 | 204 | 272 | 246 | 314 | 6.68e-27 | 107 |
| MsG0480020896.01.T03 | AT5G02600 | 68.116 | 69 | 22 | 0 | 204 | 272 | 246 | 314 | 6.68e-27 | 107 |
| MsG0480020896.01.T03 | AT2G37390 | 44.882 | 127 | 62 | 3 | 149 | 275 | 130 | 248 | 7.80e-27 | 105 |
| MsG0480020896.01.T03 | AT2G37390 | 44.094 | 127 | 62 | 3 | 149 | 275 | 130 | 247 | 1.18e-26 | 105 |
| MsG0480020896.01.T03 | AT3G53530 | 35.573 | 253 | 105 | 12 | 58 | 271 | 1 | 234 | 2.31e-25 | 101 |
| MsG0480020896.01.T03 | AT3G24450 | 52.941 | 68 | 32 | 0 | 206 | 273 | 72 | 139 | 5.66e-19 | 81.6 |
| MsG0480020896.01.T03 | AT1G66240 | 38.667 | 75 | 45 | 1 | 207 | 280 | 32 | 106 | 7.23e-13 | 64.3 |
| MsG0480020896.01.T03 | AT3G56240 | 45.455 | 66 | 35 | 1 | 208 | 272 | 3 | 68 | 3.16e-12 | 62.8 |
| MsG0480020896.01.T03 | AT3G56240 | 45.455 | 66 | 35 | 1 | 208 | 272 | 3 | 68 | 3.16e-12 | 62.8 |
| MsG0480020896.01.T03 | AT5G27690 | 32.653 | 98 | 60 | 3 | 181 | 274 | 2 | 97 | 1.91e-11 | 64.3 |
Find 37 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGAAGAAGAGGTCCGAATT+AGG | 0.201736 | 4:-50316181 | None:intergenic |
| TCTTTCATGATCATAGGTTT+TGG | 0.288042 | 4:-50315868 | None:intergenic |
| AAACATGTCCATTCCTTTCA+TGG | 0.290548 | 4:-50315769 | None:intergenic |
| TAGAGAGAATGAGTTATTGT+TGG | 0.347273 | 4:-50315696 | None:intergenic |
| GATATCTGAGTCCAGCAAAA+TGG | 0.353254 | 4:+50316097 | MsG0480020896.01.T01:CDS |
| TTTCTATGTTTCTCAAAGTA+AGG | 0.370339 | 4:-50315948 | None:intergenic |
| GTTAAGTTGATTAATTTGTT+TGG | 0.389708 | 4:-50315729 | None:intergenic |
| TTTCCTTCTTTCATGATCAT+AGG | 0.390012 | 4:-50315874 | None:intergenic |
| GAAAGATCTTTCTAATATTG+AGG | 0.402588 | 4:-50315613 | None:intergenic |
| TGTATTATTGCTGTTGAAGA+AGG | 0.409703 | 4:-50315801 | None:intergenic |
| ACGATTCTCATGCCCTAATT+CGG | 0.418075 | 4:+50316168 | MsG0480020896.01.T01:intron |
| AAAGATCTTTCTAATATTGA+GGG | 0.426432 | 4:-50315612 | None:intergenic |
| CGACATGTCGTTGACATGAC+TGG | 0.430518 | 4:-50316027 | None:intergenic |
| TGAAGAAGAGGTCCGAATTA+GGG | 0.437918 | 4:-50316180 | None:intergenic |
| AAGTAAGGCATAGGATTGAT+AGG | 0.439017 | 4:-50315933 | None:intergenic |
| ACCTCTTGCTTCCAAGAACC+AGG | 0.447892 | 4:+50316202 | MsG0480020896.01.T01:intron |
| TGAGTTATTGTTGGAAGCAA+TGG | 0.456441 | 4:-50315687 | None:intergenic |
| CTAATATTGAGGGAGGGAAA+AGG | 0.467930 | 4:-50315602 | None:intergenic |
| TGAAGGTAATGAAGGCTAAA+GGG | 0.477541 | 4:-50315645 | None:intergenic |
| CGCCTGCGCCATTCATCGAT+TGG | 0.508395 | 4:+50316075 | MsG0480020896.01.T01:CDS |
| CTGAAGGTAATGAAGGCTAA+AGG | 0.523084 | 4:-50315646 | None:intergenic |
| GTATTATTGCTGTTGAAGAA+GGG | 0.525020 | 4:-50315800 | None:intergenic |
| GTAGTAGCTGAAGGTAATGA+AGG | 0.532538 | 4:-50315653 | None:intergenic |
| ATTCAACTTATATCCATGAA+AGG | 0.541198 | 4:+50315756 | MsG0480020896.01.T03:CDS |
| TCAGATATCCAATCGATGAA+TGG | 0.542733 | 4:-50316083 | None:intergenic |
| ACTTATATCCATGAAAGGAA+TGG | 0.544706 | 4:+50315761 | MsG0480020896.01.T03:CDS |
| TGTTTCTCAAAGTAAGGCAT+AGG | 0.546143 | 4:-50315942 | None:intergenic |
| AAACCTATGATCATGAAAGA+AGG | 0.548688 | 4:+50315871 | MsG0480020896.01.T01:CDS |
| TATTATTGCTGTTGAAGAAG+GGG | 0.558379 | 4:-50315799 | None:intergenic |
| GGAAGCAAGAGGTGAAGAAG+AGG | 0.566659 | 4:-50316192 | None:intergenic |
| GATCTTTCTAATATTGAGGG+AGG | 0.572389 | 4:-50315609 | None:intergenic |
| ATCCAATCGATGAATGGCGC+AGG | 0.577036 | 4:-50316077 | None:intergenic |
| ATCTTTCTAATATTGAGGGA+GGG | 0.593986 | 4:-50315608 | None:intergenic |
| ACCTGGTTCTTGGAAGCAAG+AGG | 0.611586 | 4:-50316203 | None:intergenic |
| TGATGTTAAAGACATGTCCA+TGG | 0.635238 | 4:+50316130 | MsG0480020896.01.T01:intron |
| ATGGCGCAGGCGCGTCATCG+AGG | 0.676997 | 4:-50316064 | None:intergenic |
| ATAGGTAATTGAGATGAACA+AGG | 0.716520 | 4:-50315915 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTATATATCATAAGCA+CGG | - | Chr4:50316500-50316519 | None:intergenic | 15.0% |
| !! | ATGTTAAACACAAATTATTT+GGG | + | Chr4:50316730-50316749 | MsG0480020896.01.T01:intron | 15.0% |
| !! | TATGTTAAACACAAATTATT+TGG | + | Chr4:50316729-50316748 | MsG0480020896.01.T01:intron | 15.0% |
| !!! | ATTTTTATACACTTAATACA+AGG | - | Chr4:50316708-50316727 | None:intergenic | 15.0% |
| !!! | GTTTTTAATTACTTTGATTT+TGG | + | Chr4:50316525-50316544 | MsG0480020896.01.T01:intron | 15.0% |
| !!! | TAAATGAATAGTACTATTTT+CGG | + | Chr4:50317272-50317291 | MsG0480020896.01.T01:three_prime_UTR | 15.0% |
| !!! | TCAATAAAAGTTGATATATT+TGG | + | Chr4:50316977-50316996 | MsG0480020896.01.T01:three_prime_UTR | 15.0% |
| !!! | TCAATAAAAGTTGATATATT+TGG | - | Chr4:50316996-50316977 | None:intergenic | 15.0% |
| !!! | TTTCTATTTCTAATTAATTG+CGG | + | Chr4:50316314-50316333 | MsG0480020896.01.T01:intron | 15.0% |
| !! | AAAGATCTTTCTAATATTGA+GGG | - | Chr4:50315615-50315634 | None:intergenic | 20.0% |
| !! | ACAAAGAAAGTAACAATTAT+CGG | + | Chr4:50316799-50316818 | MsG0480020896.01.T01:CDS | 20.0% |
| !! | ATTAAAACAAAACAAAAACC+TGG | - | Chr4:50316223-50316242 | None:intergenic | 20.0% |
| !! | TAGAAAACATATCTCAAAAA+TGG | + | Chr4:50316638-50316657 | MsG0480020896.01.T01:CDS | 20.0% |
| !!! | GTTAAGTTGATTAATTTGTT+TGG | - | Chr4:50315732-50315751 | None:intergenic | 20.0% |
| ! | AAAATGCATAATAACATGGT+GGG | + | Chr4:50317182-50317201 | MsG0480020896.01.T01:three_prime_UTR | 25.0% |
| ! | AAACAAAAGTAAACTTGAGA+GGG | - | Chr4:50317069-50317088 | None:intergenic | 25.0% |
| ! | AAACATATCTCAAAAATGGA+AGG | + | Chr4:50316642-50316661 | MsG0480020896.01.T01:CDS | 25.0% |
| ! | AGTGAAAATGCATAATAACA+TGG | + | Chr4:50317178-50317197 | MsG0480020896.01.T01:three_prime_UTR | 25.0% |
| ! | ATAAGAAGCAAAATGCTATT+TGG | + | Chr4:50317121-50317140 | MsG0480020896.01.T01:three_prime_UTR | 25.0% |
| ! | ATCTATCTTTATGAAACCTT+AGG | + | Chr4:50316566-50316585 | MsG0480020896.01.T01:intron | 25.0% |
| ! | ATTCAACTTATATCCATGAA+AGG | + | Chr4:50315756-50315775 | MsG0480020896.01.T03:CDS | 25.0% |
| ! | GAAAGATCTTTCTAATATTG+AGG | - | Chr4:50315616-50315635 | None:intergenic | 25.0% |
| ! | TTTCTATGTTTCTCAAAGTA+AGG | - | Chr4:50315951-50315970 | None:intergenic | 25.0% |
| !!! | TCGCAATATAAAAGTTTTAG+AGG | + | Chr4:50316356-50316375 | MsG0480020896.01.T01:intron | 25.0% |
| AAACCTATGATCATGAAAGA+AGG | + | Chr4:50315871-50315890 | MsG0480020896.01.T01:CDS | 30.0% | |
| AAATGCATAATAACATGGTG+GGG | + | Chr4:50317183-50317202 | MsG0480020896.01.T01:three_prime_UTR | 30.0% | |
| ACAAAGACACACATTTCTAA+AGG | - | Chr4:50317098-50317117 | None:intergenic | 30.0% | |
| ACTTATATCCATGAAAGGAA+TGG | + | Chr4:50315761-50315780 | MsG0480020896.01.T03:CDS | 30.0% | |
| ATAGGTAATTGAGATGAACA+AGG | - | Chr4:50315918-50315937 | None:intergenic | 30.0% | |
| ATCTTTCTAATATTGAGGGA+GGG | - | Chr4:50315611-50315630 | None:intergenic | 30.0% | |
| ATTGATAAGTCATCTAGTTG+AGG | - | Chr4:50317236-50317255 | None:intergenic | 30.0% | |
| CAAACAAAAGTAAACTTGAG+AGG | - | Chr4:50317070-50317089 | None:intergenic | 30.0% | |
| GAAAATGCATAATAACATGG+TGG | + | Chr4:50317181-50317200 | MsG0480020896.01.T01:three_prime_UTR | 30.0% | |
| GAAATCATTCACCATAGAAA+TGG | + | Chr4:50316774-50316793 | MsG0480020896.01.T01:CDS | 30.0% | |
| TAGAGAGAATGAGTTATTGT+TGG | - | Chr4:50315699-50315718 | None:intergenic | 30.0% | |
| TTGGGTTAATAATGTTGTGT+AGG | + | Chr4:50316748-50316767 | MsG0480020896.01.T01:intron | 30.0% | |
| TTTCCTTCTTTCATGATCAT+AGG | - | Chr4:50315877-50315896 | None:intergenic | 30.0% | |
| TTTCTTTGTCTCCATTTCTA+TGG | - | Chr4:50316788-50316807 | None:intergenic | 30.0% | |
| ! | AGTACTATTTTCGGTTAGAT+GGG | + | Chr4:50317281-50317300 | MsG0480020896.01.T01:three_prime_UTR | 30.0% |
| ! | ATATATCATAAGCACGGTTT+TGG | - | Chr4:50316494-50316513 | None:intergenic | 30.0% |
| ! | GTATTATTGCTGTTGAAGAA+GGG | - | Chr4:50315803-50315822 | None:intergenic | 30.0% |
| ! | TAGTACTATTTTCGGTTAGA+TGG | + | Chr4:50317280-50317299 | MsG0480020896.01.T01:three_prime_UTR | 30.0% |
| ! | TATTATTGCTGTTGAAGAAG+GGG | - | Chr4:50315802-50315821 | None:intergenic | 30.0% |
| ! | TCTTTCATGATCATAGGTTT+TGG | - | Chr4:50315871-50315890 | None:intergenic | 30.0% |
| ! | TGTATTATTGCTGTTGAAGA+AGG | - | Chr4:50315804-50315823 | None:intergenic | 30.0% |
| !! | CTCTCAAGTTTACTTTTGTT+TGG | + | Chr4:50317068-50317087 | MsG0480020896.01.T01:three_prime_UTR | 30.0% |
| !! | TTTTAAGTAGTAGTAGCTGA+AGG | - | Chr4:50315665-50315684 | None:intergenic | 30.0% |
| !!! | GTTTTTTCGTTTCATATCCA+TGG | - | Chr4:50316150-50316169 | None:intergenic | 30.0% |
| AAACATGTCCATTCCTTTCA+TGG | - | Chr4:50315772-50315791 | None:intergenic | 35.0% | |
| AAGTAAGGCATAGGATTGAT+AGG | - | Chr4:50315936-50315955 | None:intergenic | 35.0% | |
| AATCGCAGTTGCAGTAATAT+TGG | + | Chr4:50316397-50316416 | MsG0480020896.01.T01:intron | 35.0% | |
| GATCTTTCTAATATTGAGGG+AGG | - | Chr4:50315612-50315631 | None:intergenic | 35.0% | |
| TCAGATATCCAATCGATGAA+TGG | - | Chr4:50316086-50316105 | None:intergenic | 35.0% | |
| TGAAGGTAATGAAGGCTAAA+GGG | - | Chr4:50315648-50315667 | None:intergenic | 35.0% | |
| TGAGTTATTGTTGGAAGCAA+TGG | - | Chr4:50315690-50315709 | None:intergenic | 35.0% | |
| TGATGTTAAAGACATGTCCA+TGG | + | Chr4:50316130-50316149 | MsG0480020896.01.T01:intron | 35.0% | |
| TGTTTCTCAAAGTAAGGCAT+AGG | - | Chr4:50315945-50315964 | None:intergenic | 35.0% | |
| ! | AGTAGAAGATGATGATGATG+AGG | - | Chr4:50316905-50316924 | None:intergenic | 35.0% |
| ! | ATGCATAGAAACCATTTTGC+TGG | - | Chr4:50316111-50316130 | None:intergenic | 35.0% |
| ! | CAAAACAAAAACCTGGTTCT+TGG | - | Chr4:50316216-50316235 | None:intergenic | 35.0% |
| ! | CTTTATGAAACCTTAGGTTG+TGG | + | Chr4:50316572-50316591 | MsG0480020896.01.T01:intron | 35.0% |
| ACGATTCTCATGCCCTAATT+CGG | + | Chr4:50316168-50316187 | MsG0480020896.01.T01:intron | 40.0% | |
| CTAATATTGAGGGAGGGAAA+AGG | - | Chr4:50315605-50315624 | None:intergenic | 40.0% | |
| CTGAAGGTAATGAAGGCTAA+AGG | - | Chr4:50315649-50315668 | None:intergenic | 40.0% | |
| GAGGATGAAGATGTTGTAGA+CGG | - | Chr4:50316886-50316905 | None:intergenic | 40.0% | |
| GATATCTGAGTCCAGCAAAA+TGG | + | Chr4:50316097-50316116 | MsG0480020896.01.T01:CDS | 40.0% | |
| GTAGTAGCTGAAGGTAATGA+AGG | - | Chr4:50315656-50315675 | None:intergenic | 40.0% | |
| TAGTTGAGGAACTGAAAGTG+AGG | - | Chr4:50317222-50317241 | None:intergenic | 40.0% | |
| TGAAGAAGAGGTCCGAATTA+GGG | - | Chr4:50316183-50316202 | None:intergenic | 40.0% | |
| ! | AACCTTAGGTTGTGGTTCTA+AGG | + | Chr4:50316580-50316599 | MsG0480020896.01.T01:intron | 40.0% |
| !! | ACCTTAGGTTGTGGTTCTAA+GGG | + | Chr4:50316581-50316600 | MsG0480020896.01.T01:intron | 40.0% |
| !! | GGAGCTTTTTCTACGTATCT+CGG | - | Chr4:50316009-50316028 | None:intergenic | 40.0% |
| ACCCTTAGAACCACAACCTA+AGG | - | Chr4:50316585-50316604 | None:intergenic | 45.0% | |
| CTGCGATTGTGATATCGTTG+TGG | - | Chr4:50316385-50316404 | None:intergenic | 45.0% | |
| GTAACTCATTGTGCCAATCG+CGG | - | Chr4:50316937-50316956 | None:intergenic | 45.0% | |
| GTGAAGAAGAGGTCCGAATT+AGG | - | Chr4:50316184-50316203 | None:intergenic | 45.0% | |
| TACTCTAGCATTTCCGCGAT+TGG | + | Chr4:50316921-50316940 | MsG0480020896.01.T01:CDS | 45.0% | |
| TTGCATTGCAAAGCTTGCGA+AGG | + | Chr4:50316609-50316628 | MsG0480020896.01.T01:CDS | 45.0% | |
| ! | AGGTGAAGAGTGCACAACTA+TGG | + | Chr4:50316860-50316879 | MsG0480020896.01.T01:CDS | 45.0% |
| ACACTCGCCAGTACGTCTAA+TGG | - | Chr4:50316835-50316854 | None:intergenic | 50.0% | |
| ACCTCTTGCTTCCAAGAACC+AGG | + | Chr4:50316202-50316221 | MsG0480020896.01.T01:intron | 50.0% | |
| ATCCAATCGATGAATGGCGC+AGG | - | Chr4:50316080-50316099 | None:intergenic | 50.0% | |
| CGACATGTCGTTGACATGAC+TGG | - | Chr4:50316030-50316049 | None:intergenic | 50.0% | |
| CGTGACACCATTAGACGTAC+TGG | + | Chr4:50316825-50316844 | MsG0480020896.01.T01:CDS | 50.0% | |
| GGAAGCAAGAGGTGAAGAAG+AGG | - | Chr4:50316195-50316214 | None:intergenic | 50.0% | |
| ! | ACCTGGTTCTTGGAAGCAAG+AGG | - | Chr4:50316206-50316225 | None:intergenic | 50.0% |
| ! | CGTACTGGCGAGTGTATCTA+AGG | + | Chr4:50316840-50316859 | MsG0480020896.01.T01:CDS | 50.0% |
| CGCCTGCGCCATTCATCGAT+TGG | + | Chr4:50316075-50316094 | MsG0480020896.01.T01:CDS | 60.0% | |
| ATGGCGCAGGCGCGTCATCG+AGG | - | Chr4:50316067-50316086 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 50315600 | 50317317 | 50315600 | ID=MsG0480020896.01;Name=MsG0480020896.01 |
| Chr4 | mRNA | 50315771 | 50317317 | 50315771 | ID=MsG0480020896.01.T01;Parent=MsG0480020896.01;Name=MsG0480020896.01.T01;_AED=0.25;_eAED=0.25;_QI=0|0.33|0.5|1|0|0|4|366|193 |
| Chr4 | exon | 50315771 | 50315981 | 50315771 | ID=MsG0480020896.01.T01:exon:16606;Parent=MsG0480020896.01.T01 |
| Chr4 | exon | 50316021 | 50316133 | 50316021 | ID=MsG0480020896.01.T01:exon:16607;Parent=MsG0480020896.01.T01 |
| Chr4 | CDS | 50315771 | 50315981 | 50315771 | ID=MsG0480020896.01.T01:cds;Parent=MsG0480020896.01.T01 |
| Chr4 | CDS | 50316021 | 50316133 | 50316021 | ID=MsG0480020896.01.T01:cds;Parent=MsG0480020896.01.T01 |
| Chr4 | CDS | 50316588 | 50316663 | 50316588 | ID=MsG0480020896.01.T01:cds;Parent=MsG0480020896.01.T01 |
| Chr4 | CDS | 50316770 | 50316951 | 50316770 | ID=MsG0480020896.01.T01:cds;Parent=MsG0480020896.01.T01 |
| Chr4 | three_prime_UTR | 50316952 | 50317317 | 50316952 | ID=MsG0480020896.01.T01:three_prime_utr;Parent=MsG0480020896.01.T01 |
| Chr4 | mRNA | 50315945 | 50317317 | 50315945 | ID=MsG0480020896.01.T02;Parent=MsG0480020896.01;Name=MsG0480020896.01.T02;_AED=0.30;_eAED=0.30;_QI=0|0.33|0.5|1|0|0|4|366|137 |
| Chr4 | exon | 50315945 | 50316010 | 50315945 | ID=MsG0480020896.01.T02:exon:16610;Parent=MsG0480020896.01.T02 |
| Chr4 | exon | 50316044 | 50316133 | 50316044 | ID=MsG0480020896.01.T02:exon:16611;Parent=MsG0480020896.01.T02 |
| Chr4 | CDS | 50315945 | 50316010 | 50315945 | ID=MsG0480020896.01.T02:cds;Parent=MsG0480020896.01.T02 |
| Chr4 | CDS | 50316044 | 50316133 | 50316044 | ID=MsG0480020896.01.T02:cds;Parent=MsG0480020896.01.T02 |
| Chr4 | CDS | 50316588 | 50316663 | 50316588 | ID=MsG0480020896.01.T02:cds;Parent=MsG0480020896.01.T02 |
| Chr4 | CDS | 50316770 | 50316951 | 50316770 | ID=MsG0480020896.01.T02:cds;Parent=MsG0480020896.01.T02 |
| Chr4 | three_prime_UTR | 50316952 | 50317317 | 50316952 | ID=MsG0480020896.01.T02:three_prime_utr;Parent=MsG0480020896.01.T02 |
| Chr4 | mRNA | 50315600 | 50317317 | 50315600 | ID=MsG0480020896.01.T03;Parent=MsG0480020896.01;Name=MsG0480020896.01.T03;_AED=0.18;_eAED=0.18;_QI=0|1|0.66|1|0|0|3|366|293 |
| Chr4 | exon | 50315600 | 50316223 | 50315600 | ID=MsG0480020896.01.T03:exon:16612;Parent=MsG0480020896.01.T03 |
| Chr4 | CDS | 50315600 | 50316223 | 50315600 | ID=MsG0480020896.01.T03:cds;Parent=MsG0480020896.01.T03 |
| Chr4 | CDS | 50316588 | 50316663 | 50316588 | ID=MsG0480020896.01.T03:cds;Parent=MsG0480020896.01.T03 |
| Chr4 | CDS | 50316770 | 50316951 | 50316770 | ID=MsG0480020896.01.T03:cds;Parent=MsG0480020896.01.T03 |
| Chr4 | three_prime_UTR | 50316952 | 50317317 | 50316952 | ID=MsG0480020896.01.T03:three_prime_utr;Parent=MsG0480020896.01.T03 |
| Chr4 | mRNA | 50315688 | 50317317 | 50315688 | ID=MsG0480020896.01.T04;Parent=MsG0480020896.01;Name=MsG0480020896.01.T04;_AED=0.20;_eAED=0.20;_QI=83|1|1|1|0|0|3|366|236 |
| Chr4 | exon | 50315688 | 50316223 | 50315688 | ID=MsG0480020896.01.T04:exon:16613;Parent=MsG0480020896.01.T04 |
| Chr4 | five_prime_UTR | 50315688 | 50315770 | 50315688 | ID=MsG0480020896.01.T04:five_prime_utr;Parent=MsG0480020896.01.T04 |
| Chr4 | CDS | 50315771 | 50316223 | 50315771 | ID=MsG0480020896.01.T04:cds;Parent=MsG0480020896.01.T04 |
| Chr4 | CDS | 50316588 | 50316663 | 50316588 | ID=MsG0480020896.01.T04:cds;Parent=MsG0480020896.01.T04 |
| Chr4 | CDS | 50316770 | 50316951 | 50316770 | ID=MsG0480020896.01.T04:cds;Parent=MsG0480020896.01.T04 |
| Chr4 | three_prime_UTR | 50316952 | 50317317 | 50316952 | ID=MsG0480020896.01.T04:three_prime_utr;Parent=MsG0480020896.01.T04 |
| Gene Sequence |
| Protein sequence |
