AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021040.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021040.01.T01 MTR_4g064883 71.488 242 14 4 4 241 63 253 8.07e-110 318
MsG0480021040.01.T01 MTR_4g064883 84.564 149 14 3 4 148 63 206 1.82e-81 244
MsG0480021040.01.T01 MTR_3g068070 44.583 240 78 4 5 240 65 253 4.43e-64 201
MsG0480021040.01.T01 MTR_3g068155 44.672 244 80 4 2 241 66 258 8.46e-61 193
MsG0480021040.01.T01 MTR_3g068085 42.500 240 83 4 5 240 65 253 3.62e-59 189
MsG0480021040.01.T01 MTR_3g068175 42.798 243 88 3 3 241 65 260 3.28e-56 182
MsG0480021040.01.T01 MTR_3g068175 42.798 243 84 4 3 241 65 256 5.78e-56 181
MsG0480021040.01.T01 MTR_3g068065 43.333 240 81 5 5 240 67 255 1.69e-55 180
MsG0480021040.01.T01 MTR_7g063270 43.154 241 85 6 5 241 66 258 1.72e-53 174
MsG0480021040.01.T01 MTR_4g064887 43.154 241 82 5 5 241 65 254 2.04e-52 171
MsG0480021040.01.T01 MTR_7g063260 41.494 241 90 6 5 241 66 259 7.21e-50 165
MsG0480021040.01.T01 MTR_7g063390 41.250 240 90 6 5 240 66 258 2.86e-49 163
MsG0480021040.01.T01 MTR_7g063360 40.833 240 91 5 5 240 66 258 4.29e-47 158
MsG0480021040.01.T01 MTR_7g063320 38.750 240 96 5 5 240 65 257 1.50e-46 156
MsG0480021040.01.T01 MTR_7g063330 37.083 240 99 5 5 240 65 256 2.50e-42 145
MsG0480021040.01.T01 MTR_4g064887 50.000 148 65 3 5 148 65 207 1.55e-37 132
MsG0480021040.01.T01 MTR_7g063270 35.865 237 59 8 5 241 66 209 2.34e-29 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021040.01.T01 AT2G29260 58.091 241 46 4 5 241 118 307 2.63e-81 247
MsG0480021040.01.T01 AT5G06060 48.750 240 68 4 5 240 59 247 8.42e-69 213
MsG0480021040.01.T01 AT2G29370 46.311 244 76 4 2 241 63 255 5.47e-59 188
MsG0480021040.01.T01 AT2G29290 43.983 241 80 4 5 241 40 229 5.08e-58 185
MsG0480021040.01.T01 AT2G29290 43.983 241 80 4 5 241 57 246 1.10e-57 185
MsG0480021040.01.T01 AT2G29360 43.852 244 82 3 2 241 63 255 1.53e-56 182
MsG0480021040.01.T01 AT2G30670 42.213 244 86 4 2 241 54 246 7.00e-55 178
MsG0480021040.01.T01 AT2G29330 42.213 244 86 4 2 241 54 246 1.65e-54 177
MsG0480021040.01.T01 AT2G29320 44.490 245 80 7 2 241 42 235 2.03e-54 176
MsG0480021040.01.T01 AT2G29320 44.490 245 80 7 2 241 60 253 2.41e-54 177
MsG0480021040.01.T01 AT1G07440 43.983 241 79 5 5 241 62 250 4.37e-54 176
MsG0480021040.01.T01 AT2G29150 42.623 244 84 4 2 241 63 254 4.92e-53 173
MsG0480021040.01.T01 AT2G29340 40.984 244 89 4 2 241 54 246 5.09e-53 173
MsG0480021040.01.T01 AT2G29340 41.016 256 124 7 2 240 54 299 6.63e-53 174
MsG0480021040.01.T01 AT2G29300 43.265 245 83 6 2 241 54 247 1.06e-52 172
MsG0480021040.01.T01 AT2G29310 41.803 244 87 4 2 241 54 246 2.59e-52 171
MsG0480021040.01.T01 AT2G29350 42.213 244 85 5 2 241 24 215 2.76e-52 170
MsG0480021040.01.T01 AT2G29310 41.803 244 87 4 2 241 52 244 3.65e-52 171
MsG0480021040.01.T01 AT2G29300 43.265 245 83 6 2 241 54 247 3.67e-52 171
MsG0480021040.01.T01 AT1G07450 43.154 241 81 5 5 241 58 246 5.10e-52 170
MsG0480021040.01.T01 AT2G29350 42.213 244 85 5 2 241 62 253 6.95e-52 170
MsG0480021040.01.T01 AT2G29350 52.027 148 62 3 2 145 62 204 3.56e-41 141
MsG0480021040.01.T01 AT2G29320 51.351 148 62 4 2 144 60 202 4.03e-40 138
MsG0480021040.01.T01 AT2G29340 47.973 148 68 3 2 145 54 196 2.84e-38 133
MsG0480021040.01.T01 AT2G29340 47.973 148 68 3 2 145 54 196 2.84e-38 133
MsG0480021040.01.T01 AT2G29310 49.324 148 66 3 2 145 52 194 2.16e-37 130
MsG0480021040.01.T01 AT2G29310 49.324 148 66 3 2 145 54 196 2.21e-37 131
MsG0480021040.01.T01 AT1G07440 50.926 108 49 1 5 108 62 169 3.06e-28 106

Find 101 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTTTGTATCTTCTGTTTC+TGG 0.076615 4:+52529942 MsG0480021040.01.T01:CDS
TAGGAAATTATTATTCATTT+TGG 0.173586 4:-52532868 None:intergenic
TACCGTTAAGAGACCATTTC+TGG 0.175998 4:-52528725 None:intergenic
AAACTCATTGATACCAATTT+AGG 0.195315 4:+52529855 MsG0480021040.01.T01:CDS
CATAGGCCTTTGCAAGGTTT+TGG 0.248641 4:+52532936 MsG0480021040.01.T01:three_prime_UTR
ATGAAAAGTGGATCCTAAAT+TGG 0.270575 4:-52529868 None:intergenic
TAAATTGGTATCAATGAGTT+TGG 0.290702 4:-52529853 None:intergenic
GAGACCATTTCTGGTTTGTT+GGG 0.300673 4:-52528716 None:intergenic
ACAGGTGGAACTCGCGGAAT+TGG 0.318020 4:+52528762 MsG0480021040.01.T01:five_prime_UTR
ACAACAGAGGGAAGTGCTTA+TGG 0.321224 4:+52529026 MsG0480021040.01.T01:CDS
TCTGAGCAACAAAGACTATC+TGG 0.344152 4:+52532570 MsG0480021040.01.T01:CDS
ACTTCAACTGGTTGAGGAAA+TGG 0.346903 4:+52531394 MsG0480021040.01.T01:CDS
GATGTTTCCTTTGTCTTCAA+TGG 0.351316 4:+52529051 MsG0480021040.01.T01:CDS
AGAGACCATTTCTGGTTTGT+TGG 0.369654 4:-52528717 None:intergenic
GTTTGAAGGAATGGAATCAT+TGG 0.382905 4:+52528963 MsG0480021040.01.T01:exon
AGAGATTGTTGTTGAAGAAC+CGG 0.392727 4:-52528644 None:intergenic
GGTTGGAATGTAACATGGTT+TGG 0.394076 4:-52528693 None:intergenic
CACATTCATCGTGCTTCATC+CGG 0.408239 4:-52531346 None:intergenic
CTCAGTGGAGAAGGCACAAC+TGG 0.408260 4:+52531297 MsG0480021040.01.T01:intron
TGTGGAGGAATTGATGGGTT+TGG 0.412381 4:+52528893 MsG0480021040.01.T01:five_prime_UTR
TTAATAAGTGTTTGAAGGAA+TGG 0.424160 4:+52528954 MsG0480021040.01.T01:exon
AATTGCGATAGCAGAATAGA+TGG 0.430210 4:-52532973 None:intergenic
TGCCATTGTGGAGGAATTGA+TGG 0.431939 4:+52528887 MsG0480021040.01.T01:five_prime_UTR
CAGGTGGAACTCGCGGAATT+GGG 0.434489 4:+52528763 MsG0480021040.01.T01:five_prime_UTR
CAGTCATACAACAATTGTTC+CGG 0.434815 4:+52528625 MsG0480021040.01.T01:five_prime_UTR
CTGAAGTCAATGTCTGTTCA+AGG 0.436616 4:+52529975 MsG0480021040.01.T01:CDS
AACATGGTTTGGCTCCGAAT+TGG 0.437345 4:-52528682 None:intergenic
AACCAGAAATGGTCTCTTAA+CGG 0.438332 4:+52528723 MsG0480021040.01.T01:five_prime_UTR
TGATCTTAATAAGTGTTTGA+AGG 0.449813 4:+52528949 MsG0480021040.01.T01:five_prime_UTR
TCAACCTTACAAAACCAATT+CGG 0.450095 4:+52528668 MsG0480021040.01.T01:five_prime_UTR
TGAGTTCAAATCTAAAGAAA+TGG 0.450356 4:+52532821 MsG0480021040.01.T01:three_prime_UTR
GCAGTTCTTAGATGTGTGTC+GGG 0.452705 4:-52532739 None:intergenic
GGATCACCTAGGCGTCTTAG+AGG 0.454622 4:-52532613 None:intergenic
TTTGAAGGAATGGAATCATT+GGG 0.455518 4:+52528964 MsG0480021040.01.T01:exon
GCACGATGAATGTGCACAAC+AGG 0.463904 4:+52531355 MsG0480021040.01.T01:CDS
ACGAGAATCTAGCTTGTGAA+TGG 0.466985 4:+52530099 MsG0480021040.01.T01:CDS
GCAGCTGTGAAGTCTGTCAT+TGG 0.472562 4:-52529822 None:intergenic
TATCCACTTCTCAAAGCATC+AGG 0.486966 4:+52529906 MsG0480021040.01.T01:CDS
AATGGGCAAAAGACAACATA+AGG 0.489515 4:+52530117 MsG0480021040.01.T01:CDS
AGACCATTTCTGGTTTGTTG+GGG 0.495632 4:-52528715 None:intergenic
ACAACTTGATGTGGAAGAAC+CGG 0.505407 4:+52531327 MsG0480021040.01.T01:CDS
CCAGCATCGTCATACATCAC+TGG 0.511870 4:+52532673 MsG0480021040.01.T01:CDS
TAGATTTGAACTCAGTCCCT+CGG 0.516589 4:-52532812 None:intergenic
ACTCCTGATGCTTTGAGAAG+TGG 0.524431 4:-52529909 None:intergenic
CAGAACTTCGATGGTAGAGC+AGG 0.525182 4:+52530166 MsG0480021040.01.T01:CDS
TGCAGTTCTTAGATGTGTGT+CGG 0.529071 4:-52532740 None:intergenic
TCTGTTCAAGGAGCAACAAA+AGG 0.530567 4:+52529987 MsG0480021040.01.T01:CDS
AACAATGTAGGACAAACATT+CGG 0.532322 4:+52529796 MsG0480021040.01.T01:intron
ACAAGGGAAGACACTTCTGC+TGG 0.536852 4:-52532634 None:intergenic
CGATGCTGGTAAGCAAAGAA+AGG 0.547982 4:-52532659 None:intergenic
GATGGAGGTATGTCCATCAA+TGG 0.553981 4:+52532711 MsG0480021040.01.T01:CDS
CGAGAATCTAGCTTGTGAAT+GGG 0.559015 4:+52530100 MsG0480021040.01.T01:CDS
GGAACTGGTCTCAGTGGAGA+AGG 0.563727 4:+52531288 MsG0480021040.01.T01:intron
ATAAGCACTTCCCTCTGTTG+TGG 0.563981 4:-52529024 None:intergenic
TGAGTTTCCATTGAAGACAA+AGG 0.566450 4:-52529058 None:intergenic
CAACAAAGACTATCTGGAAG+AGG 0.572463 4:+52532576 MsG0480021040.01.T01:CDS
GACCATTTCTGGTTTGTTGG+GGG 0.573683 4:-52528714 None:intergenic
TGGGCAGATTATATGTTGGA+TGG 0.574818 4:+52532693 MsG0480021040.01.T01:CDS
CAGCATCGTCATACATCACT+GGG 0.574965 4:+52532674 MsG0480021040.01.T01:CDS
CGAACTCCTCTAAGACGCCT+AGG 0.583440 4:+52532607 MsG0480021040.01.T01:CDS
GCCATTGTGGAGGAATTGAT+GGG 0.585111 4:+52528888 MsG0480021040.01.T01:five_prime_UTR
GTCTTGCATAGGCCTTTGCA+AGG 0.587660 4:+52532930 MsG0480021040.01.T01:three_prime_UTR
GTGCACAACAGGATGGAAGT+AGG 0.588477 4:+52531366 MsG0480021040.01.T01:CDS
GTGTCGGGGAGAACCATTGA+TGG 0.590776 4:-52532724 None:intergenic
GGTATGACAGCTCTTGTCAC+AGG 0.594523 4:+52528744 MsG0480021040.01.T01:five_prime_UTR
CAGAATAGATGGACCTCCAA+GGG 0.599897 4:-52532962 None:intergenic
CTTGTCACAGGTGGAACTCG+CGG 0.600242 4:+52528756 MsG0480021040.01.T01:five_prime_UTR
TTGGTACATCAGAACTTCGA+TGG 0.602743 4:+52530157 MsG0480021040.01.T01:CDS
TGAGAAGTGGATATGCAAGC+TGG 0.602758 4:-52529896 None:intergenic
CTTCTCAAAGCATCAGGAGT+GGG 0.605631 4:+52529912 MsG0480021040.01.T01:CDS
ACATGACAGAGATGTTTGTA+CGG 0.607458 4:+52531418 MsG0480021040.01.T01:CDS
GCAGAATAGATGGACCTCCA+AGG 0.608392 4:-52532963 None:intergenic
CCTCGGTCCTTTGTGTGATG+AGG 0.608782 4:-52532795 None:intergenic
GAGGAAAATAATAAAATACA+AGG 0.611683 4:-52532776 None:intergenic
TCACTGGGCAGATTATATGT+TGG 0.614940 4:+52532689 MsG0480021040.01.T01:CDS
AAGCTGGCACATATGAAAAG+TGG 0.620821 4:-52529880 None:intergenic
GGAGTAATGCAGTTGCACCT+TGG 0.626514 4:+52530138 MsG0480021040.01.T01:CDS
TATAAAATGACAATTAAGTG+TGG 0.627056 4:+52532845 MsG0480021040.01.T01:three_prime_UTR
AGTCCCTAAAAGTCTTGCAT+AGG 0.628381 4:+52532919 MsG0480021040.01.T01:three_prime_UTR
CCAGTGATGTATGACGATGC+TGG 0.631926 4:-52532673 None:intergenic
GTAAGCAAAGAAAGGCGACA+AGG 0.633882 4:-52532651 None:intergenic
CTCATCACACAAAGGACCGA+GGG 0.633954 4:+52532796 MsG0480021040.01.T01:three_prime_UTR
GATGAATGTGCACAACAGGA+TGG 0.636495 4:+52531359 MsG0480021040.01.T01:CDS
ATGTGTCAGTTCCACAACAG+AGG 0.639889 4:+52529013 MsG0480021040.01.T01:CDS
CCTCATCACACAAAGGACCG+AGG 0.640447 4:+52532795 MsG0480021040.01.T01:three_prime_UTR
GGTTGAATGACAACTTGATG+TGG 0.640827 4:+52531318 MsG0480021040.01.T01:CDS
TGTGTCAGTTCCACAACAGA+GGG 0.642004 4:+52529014 MsG0480021040.01.T01:CDS
GGGATGCCAAAACCTTGCAA+AGG 0.643107 4:-52532942 None:intergenic
GTATGAAAGGTATGCCATTG+TGG 0.645727 4:+52528875 MsG0480021040.01.T01:intron
ATGACAGCTCTTGTCACAGG+TGG 0.647488 4:+52528747 MsG0480021040.01.T01:five_prime_UTR
AATTGTTGTATGACTGCAGT+GGG 0.647540 4:-52528618 None:intergenic
ACCCATCAATTCCTCCACAA+TGG 0.651662 4:-52528889 None:intergenic
GCAGATTATATGTTGGATGG+AGG 0.674645 4:+52532696 MsG0480021040.01.T01:CDS
ACTTCTCAAAGCATCAGGAG+TGG 0.675217 4:+52529911 MsG0480021040.01.T01:CDS
ACACTTCTGCTGGATCACCT+AGG 0.675767 4:-52532624 None:intergenic
ATCGAAGTTCTGATGTACCA+AGG 0.677348 4:-52530155 None:intergenic
TAAGCAAAGAAAGGCGACAA+GGG 0.682915 4:-52532650 None:intergenic
ACAGAGGGAAGTGCTTATGG+AGG 0.701601 4:+52529029 MsG0480021040.01.T01:CDS
CAGTTCTTAGATGTGTGTCG+GGG 0.703031 4:-52532738 None:intergenic
TGAAAGGTATGCCATTGTGG+AGG 0.737183 4:+52528878 MsG0480021040.01.T01:intron
CAATTGTTGTATGACTGCAG+TGG 0.767969 4:-52528619 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATACTAATTGTAAATATT+AGG + Chr4:52530739-52530758 MsG0480021040.01.T01:intron 10.0%
!! AGAGAGAAAAATAAATTAAA+AGG - Chr4:52529102-52529121 None:intergenic 15.0%
!! ATTTAAAAAAAATGGAGAAT+AGG - Chr4:52532890-52532909 None:intergenic 15.0%
!! TATCTACACATTAAATTATA+AGG - Chr4:52529776-52529795 None:intergenic 15.0%
!! TCTTAAAAGATTTAATATAG+AGG + Chr4:52531150-52531169 MsG0480021040.01.T01:intron 15.0%
!! TTGAAATAGAAAATTACAAA+GGG - Chr4:52530498-52530517 None:intergenic 15.0%
!!! GCATAATTTTTTATTTTGAA+TGG - Chr4:52532289-52532308 None:intergenic 15.0%
!!! TAGGAAATTATTATTCATTT+TGG - Chr4:52532871-52532890 None:intergenic 15.0%
!!! TTGTTACTTGTTTTAATAAT+TGG + Chr4:52530258-52530277 MsG0480021040.01.T01:intron 15.0%
!!! TTTCTTTGTTTAATATATTC+AGG + Chr4:52529567-52529586 MsG0480021040.01.T01:intron 15.0%
!!! TTTTTTTTTTTTGTAGATAG+AGG - Chr4:52529451-52529470 None:intergenic 15.0%
!! AATCACAAATTAACATCAAA+AGG - Chr4:52528834-52528853 None:intergenic 20.0%
!! ATCACAAATTAACATCAAAA+GGG - Chr4:52528833-52528852 None:intergenic 20.0%
!! CAAGCTTCATTTAAAAAAAA+TGG - Chr4:52532898-52532917 None:intergenic 20.0%
!! GAATTATTATATAGATCTGT+CGG - Chr4:52530348-52530367 None:intergenic 20.0%
!! GAGGAAAATAATAAAATACA+AGG - Chr4:52532779-52532798 None:intergenic 20.0%
!! GTTGAAATAGAAAATTACAA+AGG - Chr4:52530499-52530518 None:intergenic 20.0%
!! TATAAAATGACAATTAAGTG+TGG + Chr4:52532845-52532864 MsG0480021040.01.T01:three_prime_UTR 20.0%
!!! ATTATCTGAATTTTACCTTT+TGG + Chr4:52532540-52532559 MsG0480021040.01.T01:intron 20.0%
!!! ATTCTTTTGTTTTCTTCTAA+TGG - Chr4:52530217-52530236 None:intergenic 20.0%
!!! CATTTTTTTTAAATGAAGCT+TGG + Chr4:52532896-52532915 MsG0480021040.01.T01:three_prime_UTR 20.0%
!!! GAAATTTTCAAAATCAAATG+CGG - Chr4:52532442-52532461 None:intergenic 20.0%
!!! GATGATTTTATATTCTACAT+CGG - Chr4:52532065-52532084 None:intergenic 20.0%
!!! TTGTGATTTTGTATTTTGTA+TGG + Chr4:52528846-52528865 MsG0480021040.01.T01:intron 20.0%
! AAACAAAAGAATTAGCTACA+TGG + Chr4:52530225-52530244 MsG0480021040.01.T01:intron 25.0%
! AAACTCATTGATACCAATTT+AGG + Chr4:52529855-52529874 MsG0480021040.01.T01:CDS 25.0%
! AATGTGTAGATAAACAATGT+AGG + Chr4:52529784-52529803 MsG0480021040.01.T01:intron 25.0%
! ACACAAATTGCAAACATATA+TGG - Chr4:52531693-52531712 None:intergenic 25.0%
! CAGATTATAACATAATAGCT+TGG - Chr4:52530650-52530669 None:intergenic 25.0%
! CTGATACTATCATAGAATTT+AGG + Chr4:52531030-52531049 MsG0480021040.01.T01:intron 25.0%
! GACTACATTAATATTCACTT+TGG + Chr4:52529710-52529729 MsG0480021040.01.T01:intron 25.0%
! GTTTAGTCTAATAGAACTAT+GGG - Chr4:52531923-52531942 None:intergenic 25.0%
! TAAATTGGTATCAATGAGTT+TGG - Chr4:52529856-52529875 None:intergenic 25.0%
! TACTATCATAGAATTTAGGT+TGG + Chr4:52531034-52531053 MsG0480021040.01.T01:intron 25.0%
! TGAGTTCAAATCTAAAGAAA+TGG + Chr4:52532821-52532840 MsG0480021040.01.T01:three_prime_UTR 25.0%
! TGATCTTAATAAGTGTTTGA+AGG + Chr4:52528949-52528968 MsG0480021040.01.T01:five_prime_UTR 25.0%
! TGCTCAAAATTTCATAGATA+AGG + Chr4:52531879-52531898 MsG0480021040.01.T01:intron 25.0%
! TGTTTAGTCTAATAGAACTA+TGG - Chr4:52531924-52531943 None:intergenic 25.0%
! TTAAGATCAAATCATTCAGA+AGG + Chr4:52531946-52531965 MsG0480021040.01.T01:intron 25.0%
! TTAATAAGTGTTTGAAGGAA+TGG + Chr4:52528954-52528973 MsG0480021040.01.T01:exon 25.0%
! TTGATCGTATATATATGTCT+AGG - Chr4:52530543-52530562 None:intergenic 25.0%
! TTGCGTTAGAAAAATAGATT+AGG - Chr4:52531805-52531824 None:intergenic 25.0%
!! AATTTAGAATCTCCAAAACA+TGG + Chr4:52531456-52531475 MsG0480021040.01.T01:intron 25.0%
!! ACTATCATAGAATTTAGGTT+GGG + Chr4:52531035-52531054 MsG0480021040.01.T01:intron 25.0%
!! CAAACTTGAAATTTTTCTTG+TGG + Chr4:52531609-52531628 MsG0480021040.01.T01:intron 25.0%
!! TTTTGTAATTCAATACACTC+AGG - Chr4:52529259-52529278 None:intergenic 25.0%
!!! ACTTAGCTTTAAACGTATAA+CGG + Chr4:52530796-52530815 MsG0480021040.01.T01:intron 25.0%
!!! ATTTCAAAGCTGTTTTAATG+TGG - Chr4:52530429-52530448 None:intergenic 25.0%
!!! GAAGATTTGTTTGTTGTTTA+TGG + Chr4:52530051-52530070 MsG0480021040.01.T01:intron 25.0%
!!! TGAATTTTACCTTTTGGTTT+AGG + Chr4:52532546-52532565 MsG0480021040.01.T01:intron 25.0%
!!! TTGTTGTTTATGGTTTTGTA+GGG + Chr4:52530061-52530080 MsG0480021040.01.T01:intron 25.0%
!!! TTTGTTGTTTATGGTTTTGT+AGG + Chr4:52530060-52530079 MsG0480021040.01.T01:intron 25.0%
AAAGGTCAAAACTACATTAG+CGG - Chr4:52529654-52529673 None:intergenic 30.0%
AACAATGTAGGACAAACATT+CGG + Chr4:52529796-52529815 MsG0480021040.01.T01:intron 30.0%
AACTCAATATTCTTGGGTAT+TGG - Chr4:52532001-52532020 None:intergenic 30.0%
AATCATCTCTATCAAGTCAT+TGG + Chr4:52532078-52532097 MsG0480021040.01.T01:intron 30.0%
AATTCTGGATGGTTCAATTA+TGG - Chr4:52532159-52532178 None:intergenic 30.0%
ACAAAGAGTTTATGTTCCAA+AGG - Chr4:52531849-52531868 None:intergenic 30.0%
ACTAATAGAAGTGATCTTTG+AGG + Chr4:52529480-52529499 MsG0480021040.01.T01:intron 30.0%
ACTAATGAAAGACACATTTG+AGG + Chr4:52529512-52529531 MsG0480021040.01.T01:intron 30.0%
AGTGTCTAACTCAATATTCT+TGG - Chr4:52532008-52532027 None:intergenic 30.0%
ATGAAAAGTGGATCCTAAAT+TGG - Chr4:52529871-52529890 None:intergenic 30.0%
ATGTAGATCATAATTCTGGA+TGG - Chr4:52532170-52532189 None:intergenic 30.0%
ATTACAAACAGATGTAAGTG+CGG - Chr4:52531728-52531747 None:intergenic 30.0%
ATTCTGGATGGTTCAATTAT+GGG - Chr4:52532158-52532177 None:intergenic 30.0%
GAGGAAATGACAATAGTTAT+TGG - Chr4:52529432-52529451 None:intergenic 30.0%
GTAAAAATGTTGAAATCGCT+AGG + Chr4:52529349-52529368 MsG0480021040.01.T01:intron 30.0%
GTAGAATCATCTCAATTCAT+TGG + Chr4:52532191-52532210 MsG0480021040.01.T01:intron 30.0%
GTGTCTAACTCAATATTCTT+GGG - Chr4:52532007-52532026 None:intergenic 30.0%
TACGATGTAGATCATAATTC+TGG - Chr4:52532174-52532193 None:intergenic 30.0%
TCAACCTTACAAAACCAATT+CGG + Chr4:52528668-52528687 MsG0480021040.01.T01:five_prime_UTR 30.0%
TCTCACATTGAATGAGATAT+GGG - Chr4:52531129-52531148 None:intergenic 30.0%
TGTATGGTGTAATGTATGAA+AGG + Chr4:52528862-52528881 MsG0480021040.01.T01:intron 30.0%
TTCTCACATTGAATGAGATA+TGG - Chr4:52531130-52531149 None:intergenic 30.0%
TTGATTTCTATGCCAAGAAA+AGG - Chr4:52532250-52532269 None:intergenic 30.0%
TTTGAAGGAATGGAATCATT+GGG + Chr4:52528964-52528983 MsG0480021040.01.T01:exon 30.0%
! ACTTGAAATTTTTCTTGTGG+TGG + Chr4:52531612-52531631 MsG0480021040.01.T01:intron 30.0%
! ATGTTCTTAGAATTTGGGTT+GGG + Chr4:52530823-52530842 MsG0480021040.01.T01:intron 30.0%
! TGTTAAGTAGACAGTAGTTT+TGG + Chr4:52529196-52529215 MsG0480021040.01.T01:intron 30.0%
! TTATTTTCCTCATCACACAA+AGG + Chr4:52532788-52532807 MsG0480021040.01.T01:three_prime_UTR 30.0%
!! AAAACAGCTTTGAAATTGCA+AGG + Chr4:52530433-52530452 MsG0480021040.01.T01:intron 30.0%
!! CTAAGTAAGCTTTAACTTGA+GGG - Chr4:52530782-52530801 None:intergenic 30.0%
!! CTTAGCTTTAAACGTATAAC+GGG + Chr4:52530797-52530816 MsG0480021040.01.T01:intron 30.0%
!! TAAGTAAGCTTTAACTTGAG+GGG - Chr4:52530781-52530800 None:intergenic 30.0%
!!! TGTTGTTTATGGTTTTGTAG+GGG + Chr4:52530062-52530081 MsG0480021040.01.T01:intron 30.0%
AACCAGAAATGGTCTCTTAA+CGG + Chr4:52528723-52528742 MsG0480021040.01.T01:five_prime_UTR 35.0%
AAGTAGGCAAAAACTTCAAC+TGG + Chr4:52531382-52531401 MsG0480021040.01.T01:CDS 35.0%
AATGGGCAAAAGACAACATA+AGG + Chr4:52530117-52530136 MsG0480021040.01.T01:CDS 35.0%
AATTCCACTCATTGACAGAA+AGG + Chr4:52530363-52530382 MsG0480021040.01.T01:intron 35.0%
AATTGTTGTATGACTGCAGT+GGG - Chr4:52528621-52528640 None:intergenic 35.0%
ACATGACAGAGATGTTTGTA+CGG + Chr4:52531418-52531437 MsG0480021040.01.T01:CDS 35.0%
ACCAAGAAACTGCATATTTG+TGG + Chr4:52532122-52532141 MsG0480021040.01.T01:intron 35.0%
ACCACAAATATGCAGTTTCT+TGG - Chr4:52532126-52532145 None:intergenic 35.0%
ATAGAGGAAATAGAAACGAC+AGG + Chr4:52531166-52531185 MsG0480021040.01.T01:intron 35.0%
ATTAAAAGGAGCTTACAGCA+AGG - Chr4:52529088-52529107 None:intergenic 35.0%
CAGTCATACAACAATTGTTC+CGG + Chr4:52528625-52528644 MsG0480021040.01.T01:five_prime_UTR 35.0%
CCTGGATTATCCAACTATAT+GGG - Chr4:52532039-52532058 None:intergenic 35.0%
GATGTTCTTAGAATTTGGGT+TGG + Chr4:52530822-52530841 MsG0480021040.01.T01:intron 35.0%
GATGTTTCCTTTGTCTTCAA+TGG + Chr4:52529051-52529070 MsG0480021040.01.T01:CDS 35.0%
GGAGGATGTTCTTAGAATTT+GGG + Chr4:52530818-52530837 MsG0480021040.01.T01:intron 35.0%
GGTAATCTACGAATTCAGTA+AGG + Chr4:52530008-52530027 MsG0480021040.01.T01:intron 35.0%
GTAATTCAATACACTCAGGA+GGG - Chr4:52529255-52529274 None:intergenic 35.0%
GTCTTTGTATCTTCTGTTTC+TGG + Chr4:52529942-52529961 MsG0480021040.01.T01:CDS 35.0%
GTTTGAAGGAATGGAATCAT+TGG + Chr4:52528963-52528982 MsG0480021040.01.T01:exon 35.0%
TAGAGGAAATAGAAACGACA+GGG + Chr4:52531167-52531186 MsG0480021040.01.T01:intron 35.0%
TCACTTAGGAAAGACACATT+GGG + Chr4:52529542-52529561 MsG0480021040.01.T01:intron 35.0%
TCCTGGATTATCCAACTATA+TGG - Chr4:52532040-52532059 None:intergenic 35.0%
TCGTATATATATGTCTAGGC+TGG - Chr4:52530539-52530558 None:intergenic 35.0%
TGAGTTTCCATTGAAGACAA+AGG - Chr4:52529061-52529080 None:intergenic 35.0%
TGGTTCAATTATGGGATTAG+AGG - Chr4:52532150-52532169 None:intergenic 35.0%
TGTAATTCAATACACTCAGG+AGG - Chr4:52529256-52529275 None:intergenic 35.0%
TTATTGTGACTCATGTCCTT+TGG + Chr4:52531830-52531849 MsG0480021040.01.T01:intron 35.0%
TTCTGATTATATGACCAGTG+CGG - Chr4:52531658-52531677 None:intergenic 35.0%
TTTGAGGATCAATCTCACTT+AGG + Chr4:52529528-52529547 MsG0480021040.01.T01:intron 35.0%
! AACAAGCTTGATGCATTTTG+TGG - Chr4:52528582-52528601 None:intergenic 35.0%
! AATGGAATCATTGGGTTTTG+AGG + Chr4:52528972-52528991 MsG0480021040.01.T01:exon 35.0%
! ACATTTTTACCAGTTGAGCT+AGG - Chr4:52529339-52529358 None:intergenic 35.0%
! ACCAAGAAATTGCCTTTTCT+TGG + Chr4:52532235-52532254 MsG0480021040.01.T01:intron 35.0%
! AGAGATTGTTGTTGAAGAAC+CGG - Chr4:52528647-52528666 None:intergenic 35.0%
! CTTTTCTGATCCCATATAGT+TGG + Chr4:52532026-52532045 MsG0480021040.01.T01:intron 35.0%
! GCAATTTTCACCATACAAGT+CGG - Chr4:52531082-52531101 None:intergenic 35.0%
! GGTGTTCTAAATCAAATGCA+GGG - Chr4:52532421-52532440 None:intergenic 35.0%
! TGTTTTCTTCTAATGGTCAC+AGG - Chr4:52530210-52530229 None:intergenic 35.0%
! TTTGGAATGATGGTAAATGG+GGG + Chr4:52529671-52529690 MsG0480021040.01.T01:intron 35.0%
!! AAGTAAGCTTTAACTTGAGG+GGG - Chr4:52530780-52530799 None:intergenic 35.0%
!! ACCTTTGGAATGATGGTAAA+TGG + Chr4:52529668-52529687 MsG0480021040.01.T01:intron 35.0%
!! ATATGCAGTTTCTTGGTGTT+AGG - Chr4:52532119-52532138 None:intergenic 35.0%
!! CATACAAGTCGGTTTTGTAA+GGG - Chr4:52530859-52530878 None:intergenic 35.0%
!! CCTTTGGAATGATGGTAAAT+GGG + Chr4:52529669-52529688 MsG0480021040.01.T01:intron 35.0%
!! CTTTGGAATGATGGTAAATG+GGG + Chr4:52529670-52529689 MsG0480021040.01.T01:intron 35.0%
!! CTTTTGTTTCCTGCTTTGAA+GGG + Chr4:52529154-52529173 MsG0480021040.01.T01:intron 35.0%
!! GCTAAGTAAGCTTTAACTTG+AGG - Chr4:52530783-52530802 None:intergenic 35.0%
!! TATGCAGTTTCTTGGTGTTA+GGG - Chr4:52532118-52532137 None:intergenic 35.0%
!! TCTTTTGTTTCCTGCTTTGA+AGG + Chr4:52529153-52529172 MsG0480021040.01.T01:intron 35.0%
!!! AGTTTTGACCTTTGGAATGA+TGG + Chr4:52529661-52529680 MsG0480021040.01.T01:intron 35.0%
!!! GCTAATGTAGTTTTGACCTT+TGG + Chr4:52529653-52529672 MsG0480021040.01.T01:intron 35.0%
AAAGCCTTTCTGTCAATGAG+TGG - Chr4:52530370-52530389 None:intergenic 40.0%
AAGCTGGCACATATGAAAAG+TGG - Chr4:52529883-52529902 None:intergenic 40.0%
ACAACTTGATGTGGAAGAAC+CGG + Chr4:52531327-52531346 MsG0480021040.01.T01:CDS 40.0%
ACTCATGCACTCATGCTTAA+TGG - Chr4:52530305-52530324 None:intergenic 40.0%
ACTCATTGACAGAAAGGCTT+TGG + Chr4:52530369-52530388 MsG0480021040.01.T01:intron 40.0%
ACTTCAACTGGTTGAGGAAA+TGG + Chr4:52531394-52531413 MsG0480021040.01.T01:CDS 40.0%
ACTTTAGCTGGAAGAGCTAA+AGG - Chr4:52530573-52530592 None:intergenic 40.0%
AGCAAAGATGTTGGGTTTGT+CGG + Chr4:52531234-52531253 MsG0480021040.01.T01:intron 40.0%
AGGTGACATAGCAAAGATGT+TGG + Chr4:52531225-52531244 MsG0480021040.01.T01:intron 40.0%
AGTCCCTAAAAGTCTTGCAT+AGG + Chr4:52532919-52532938 MsG0480021040.01.T01:three_prime_UTR 40.0%
ATGAGTGCATGAGTCATGAT+AGG + Chr4:52530311-52530330 MsG0480021040.01.T01:intron 40.0%
ATGCTGCAATTTACCTAAGG+TGG - Chr4:52530601-52530620 None:intergenic 40.0%
ATTGGAACTCACACACACAA+TGG - Chr4:52529414-52529433 None:intergenic 40.0%
CAATTGTTGTATGACTGCAG+TGG - Chr4:52528622-52528641 None:intergenic 40.0%
CACTTAGGAAAGACACATTG+GGG + Chr4:52529543-52529562 MsG0480021040.01.T01:intron 40.0%
CCCATATAGTTGGATAATCC+AGG + Chr4:52532036-52532055 MsG0480021040.01.T01:intron 40.0%
CCCATTTACCATCATTCCAA+AGG - Chr4:52529672-52529691 None:intergenic 40.0%
CTCACTTAGGAAAGACACAT+TGG + Chr4:52529541-52529560 MsG0480021040.01.T01:intron 40.0%
CTGAAGTCAATGTCTGTTCA+AGG + Chr4:52529975-52529994 MsG0480021040.01.T01:CDS 40.0%
GACACTGTCTCACACATTTA+GGG - Chr4:52529223-52529242 None:intergenic 40.0%
GAGCCTATTCAAGATCCATT+AGG - Chr4:52531011-52531030 None:intergenic 40.0%
GCAAAAACTTCAACTGGTTG+AGG + Chr4:52531388-52531407 MsG0480021040.01.T01:CDS 40.0%
GCAGATTATATGTTGGATGG+AGG + Chr4:52532696-52532715 MsG0480021040.01.T01:CDS 40.0%
GCCAAGAAAAGGCAATTTCT+TGG - Chr4:52532239-52532258 None:intergenic 40.0%
GCTATGCTGCAATTTACCTA+AGG - Chr4:52530604-52530623 None:intergenic 40.0%
GGCCATATCTCATTTAGTGT+GGG + Chr4:52530900-52530919 MsG0480021040.01.T01:intron 40.0%
GGGAGGATGTTCTTAGAATT+TGG + Chr4:52530817-52530836 MsG0480021040.01.T01:intron 40.0%
GGTGACATAGCAAAGATGTT+GGG + Chr4:52531226-52531245 MsG0480021040.01.T01:intron 40.0%
GGTTGAATGACAACTTGATG+TGG + Chr4:52531318-52531337 MsG0480021040.01.T01:CDS 40.0%
GGTTGGAATGTAACATGGTT+TGG - Chr4:52528696-52528715 None:intergenic 40.0%
GTCCCACACTAAATGAGATA+TGG - Chr4:52530905-52530924 None:intergenic 40.0%
TAAGCAAAGAAAGGCGACAA+GGG - Chr4:52532653-52532672 None:intergenic 40.0%
TACCGTTAAGAGACCATTTC+TGG - Chr4:52528728-52528747 None:intergenic 40.0%
TAGATTTGAACTCAGTCCCT+CGG - Chr4:52532815-52532834 None:intergenic 40.0%
TATATTCTACATCGGAGTCC+TGG - Chr4:52532057-52532076 None:intergenic 40.0%
TCACTGGGCAGATTATATGT+TGG + Chr4:52532689-52532708 MsG0480021040.01.T01:CDS 40.0%
TCTGTTCAAGGAGCAACAAA+AGG + Chr4:52529987-52530006 MsG0480021040.01.T01:CDS 40.0%
TGACACTGTCTCACACATTT+AGG - Chr4:52529224-52529243 None:intergenic 40.0%
TGCAGTTCTTAGATGTGTGT+CGG - Chr4:52532743-52532762 None:intergenic 40.0%
TGCTCAGAACCTAAACCAAA+AGG - Chr4:52532558-52532577 None:intergenic 40.0%
TGGGCAGATTATATGTTGGA+TGG + Chr4:52532693-52532712 MsG0480021040.01.T01:CDS 40.0%
TTCTTCTAATGGTCACAGGA+TGG - Chr4:52530206-52530225 None:intergenic 40.0%
TTGGTACATCAGAACTTCGA+TGG + Chr4:52530157-52530176 MsG0480021040.01.T01:CDS 40.0%
! AAGGCCTATGCAAGACTTTT+AGG - Chr4:52532926-52532945 None:intergenic 40.0%
! ACGAGAATCTAGCTTGTGAA+TGG + Chr4:52530099-52530118 MsG0480021040.01.T01:CDS 40.0%
! AGGCCTATGCAAGACTTTTA+GGG - Chr4:52532925-52532944 None:intergenic 40.0%
! ATCGAAGTTCTGATGTACCA+AGG - Chr4:52530158-52530177 None:intergenic 40.0%
! CGAGAATCTAGCTTGTGAAT+GGG + Chr4:52530100-52530119 MsG0480021040.01.T01:CDS 40.0%
! CGGTGTTCTAAATCAAATGC+AGG - Chr4:52532422-52532441 None:intergenic 40.0%
! GTATGAAAGGTATGCCATTG+TGG + Chr4:52528875-52528894 MsG0480021040.01.T01:intron 40.0%
! TATCCACTTCTCAAAGCATC+AGG + Chr4:52529906-52529925 MsG0480021040.01.T01:CDS 40.0%
! TGGCCTAATGGATCTTGAAT+AGG + Chr4:52531005-52531024 MsG0480021040.01.T01:intron 40.0%
!! AGACCATTTCTGGTTTGTTG+GGG - Chr4:52528718-52528737 None:intergenic 40.0%
!! AGAGACCATTTCTGGTTTGT+TGG - Chr4:52528720-52528739 None:intergenic 40.0%
!! AGCTTTAAACGTATAACGGG+AGG + Chr4:52530800-52530819 MsG0480021040.01.T01:intron 40.0%
!! AGGCAATTTCTTGGTGTTAG+AGG - Chr4:52532230-52532249 None:intergenic 40.0%
!! CCATACAAGTCGGTTTTGTA+AGG - Chr4:52530860-52530879 None:intergenic 40.0%
!! CCTTACAAAACCGACTTGTA+TGG + Chr4:52530857-52530876 MsG0480021040.01.T01:intron 40.0%
!! GAGACCATTTCTGGTTTGTT+GGG - Chr4:52528719-52528738 None:intergenic 40.0%
!! GGTTTTGTAAGGGTTGAGTT+AGG - Chr4:52531061-52531080 None:intergenic 40.0%
!!! TAGTTTTGACCCTTCAAAGC+AGG - Chr4:52529166-52529185 None:intergenic 40.0%
!!! TCATTGGGTTTTGAGGTTAC+TGG + Chr4:52528979-52528998 MsG0480021040.01.T01:CDS 40.0%
AAAGATGTTGGGTTTGTCGG+AGG + Chr4:52531237-52531256 MsG0480021040.01.T01:intron 45.0%
AACCCCCAACAAACCAGAAA+TGG + Chr4:52528712-52528731 MsG0480021040.01.T01:five_prime_UTR 45.0%
ACCCATCAATTCCTCCACAA+TGG - Chr4:52528892-52528911 None:intergenic 45.0%
ATAAGCACTTCCCTCTGTTG+TGG - Chr4:52529027-52529046 None:intergenic 45.0%
ATGAGATATGGCCCTAAGTG+AGG - Chr4:52530893-52530912 None:intergenic 45.0%
ATGTGTCAGTTCCACAACAG+AGG + Chr4:52529013-52529032 MsG0480021040.01.T01:CDS 45.0%
CACATTCATCGTGCTTCATC+CGG - Chr4:52531349-52531368 None:intergenic 45.0%
CAGAATAGATGGACCTCCAA+GGG - Chr4:52532965-52532984 None:intergenic 45.0%
CAGCATCGTCATACATCACT+GGG + Chr4:52532674-52532693 MsG0480021040.01.T01:CDS 45.0%
CAGTTCTTAGATGTGTGTCG+GGG - Chr4:52532741-52532760 None:intergenic 45.0%
CGATGCTGGTAAGCAAAGAA+AGG - Chr4:52532662-52532681 None:intergenic 45.0%
GATATGTGTGTGTGTGTGTG+TGG + Chr4:52529732-52529751 MsG0480021040.01.T01:intron 45.0%
GATGAATGTGCACAACAGGA+TGG + Chr4:52531359-52531378 MsG0480021040.01.T01:CDS 45.0%
GCAATCCTCACCATACAAGT+CGG - Chr4:52530870-52530889 None:intergenic 45.0%
GCAGTTCTTAGATGTGTGTC+GGG - Chr4:52532742-52532761 None:intergenic 45.0%
GCCATTGTGGAGGAATTGAT+GGG + Chr4:52528888-52528907 MsG0480021040.01.T01:five_prime_UTR 45.0%
GGATAGTTACGTAGTGATCG+AGG - Chr4:52532331-52532350 None:intergenic 45.0%
GGGCCATATCTCATTTAGTG+TGG + Chr4:52530899-52530918 MsG0480021040.01.T01:intron 45.0%
GTAAGCAAAGAAAGGCGACA+AGG - Chr4:52532654-52532673 None:intergenic 45.0%
TGAGAAGTGGATATGCAAGC+TGG - Chr4:52529899-52529918 None:intergenic 45.0%
TGAGATATGGCCCTAAGTGA+GGG - Chr4:52530892-52530911 None:intergenic 45.0%
TGCAATTTACCTAAGGTGGC+TGG - Chr4:52530597-52530616 None:intergenic 45.0%
TGCCATTGTGGAGGAATTGA+TGG + Chr4:52528887-52528906 MsG0480021040.01.T01:five_prime_UTR 45.0%
TGTGTCAGTTCCACAACAGA+GGG + Chr4:52529014-52529033 MsG0480021040.01.T01:CDS 45.0%
TTCAAGATCCATTAGGCCAG+AGG - Chr4:52531004-52531023 None:intergenic 45.0%
TTGGGGGTTGGAATGTAACA+TGG - Chr4:52528701-52528720 None:intergenic 45.0%
! AACATGGTTTGGCTCCGAAT+TGG - Chr4:52528685-52528704 None:intergenic 45.0%
! ACTTCTCAAAGCATCAGGAG+TGG + Chr4:52529911-52529930 MsG0480021040.01.T01:CDS 45.0%
! CATAGGCCTTTGCAAGGTTT+TGG + Chr4:52532936-52532955 MsG0480021040.01.T01:three_prime_UTR 45.0%
! CATCTTTGCTATGTCACCTC+AGG - Chr4:52531224-52531243 None:intergenic 45.0%
! CTTCTCAAAGCATCAGGAGT+GGG + Chr4:52529912-52529931 MsG0480021040.01.T01:CDS 45.0%
! GATGGAGGTATGTCCATCAA+TGG + Chr4:52532711-52532730 MsG0480021040.01.T01:CDS 45.0%
! GGTTTGTCGGAGGATTTTGA+AGG + Chr4:52531247-52531266 MsG0480021040.01.T01:intron 45.0%
! TGAAAGGTATGCCATTGTGG+AGG + Chr4:52528878-52528897 MsG0480021040.01.T01:intron 45.0%
! TGCAGCACTAGCTTCAGATA+AGG - Chr4:52532352-52532371 None:intergenic 45.0%
!! ACAACAGAGGGAAGTGCTTA+TGG + Chr4:52529026-52529045 MsG0480021040.01.T01:CDS 45.0%
!! ACTCCTGATGCTTTGAGAAG+TGG - Chr4:52529912-52529931 None:intergenic 45.0%
!! ATGACCTTTTTCTGGCGACA+AGG - Chr4:52531511-52531530 None:intergenic 45.0%
!! ATTTCTGGTTTGTTGGGGGT+TGG - Chr4:52528713-52528732 None:intergenic 45.0%
!! CAAAACCGACTTGTATGGTG+AGG + Chr4:52530862-52530881 MsG0480021040.01.T01:intron 45.0%
!! GACCATTTCTGGTTTGTTGG+GGG - Chr4:52528717-52528736 None:intergenic 45.0%
!! GAGGATTTTGAAGGTTGCTG+TGG + Chr4:52531256-52531275 MsG0480021040.01.T01:intron 45.0%
!! GATTTTGAAGGTTGCTGTGG+TGG + Chr4:52531259-52531278 MsG0480021040.01.T01:intron 45.0%
!! TGTGGAGGAATTGATGGGTT+TGG + Chr4:52528893-52528912 MsG0480021040.01.T01:five_prime_UTR 45.0%
!!! GGCTCCGAATTGGTTTTGTA+AGG - Chr4:52528675-52528694 None:intergenic 45.0%
AACCACAGTCCTAGCTCAAC+TGG + Chr4:52529327-52529346 MsG0480021040.01.T01:intron 50.0%
ACAAGGGAAGACACTTCTGC+TGG - Chr4:52532637-52532656 None:intergenic 50.0%
ACACTCCAGATGTCCAGTCA+TGG - Chr4:52530948-52530967 None:intergenic 50.0%
ACACTTCTGCTGGATCACCT+AGG - Chr4:52532627-52532646 None:intergenic 50.0%
AGATGTCCAGTCATGGTGTG+AGG - Chr4:52530941-52530960 None:intergenic 50.0%
ATGACAGCTCTTGTCACAGG+TGG + Chr4:52528747-52528766 MsG0480021040.01.T01:five_prime_UTR 50.0%
CAGAACTTCGATGGTAGAGC+AGG + Chr4:52530166-52530185 MsG0480021040.01.T01:CDS 50.0%
CCAGCATCGTCATACATCAC+TGG + Chr4:52532673-52532692 MsG0480021040.01.T01:CDS 50.0%
CCAGTGATGTATGACGATGC+TGG - Chr4:52532676-52532695 None:intergenic 50.0%
CTCATCACACAAAGGACCGA+GGG + Chr4:52532796-52532815 MsG0480021040.01.T01:three_prime_UTR 50.0%
GAAAGTTGTAGCGCAACCTG+AGG + Chr4:52531205-52531224 MsG0480021040.01.T01:intron 50.0%
GATGTCCAGTCATGGTGTGA+GGG - Chr4:52530940-52530959 None:intergenic 50.0%
GCACGATGAATGTGCACAAC+AGG + Chr4:52531355-52531374 MsG0480021040.01.T01:CDS 50.0%
GCAGAATAGATGGACCTCCA+AGG - Chr4:52532966-52532985 None:intergenic 50.0%
GCAGCTGTGAAGTCTGTCAT+TGG - Chr4:52529825-52529844 None:intergenic 50.0%
GCTATCAGGTCACCGCTATT+GGG - Chr4:52530982-52531001 None:intergenic 50.0%
GGAGTAATGCAGTTGCACCT+TGG + Chr4:52530138-52530157 MsG0480021040.01.T01:CDS 50.0%
GGGATGCCAAAACCTTGCAA+AGG - Chr4:52532945-52532964 None:intergenic 50.0%
GGTATGACAGCTCTTGTCAC+AGG + Chr4:52528744-52528763 MsG0480021040.01.T01:five_prime_UTR 50.0%
GTCTTGCATAGGCCTTTGCA+AGG + Chr4:52532930-52532949 MsG0480021040.01.T01:three_prime_UTR 50.0%
GTGAGGATTGCCCTCACTTA+GGG + Chr4:52530879-52530898 MsG0480021040.01.T01:intron 50.0%
GTGCACAACAGGATGGAAGT+AGG + Chr4:52531366-52531385 MsG0480021040.01.T01:CDS 50.0%
TACCAGTTGAGCTAGGACTG+TGG - Chr4:52529332-52529351 None:intergenic 50.0%
TCACACCATGACTGGACATC+TGG + Chr4:52530940-52530959 MsG0480021040.01.T01:intron 50.0%
TCCAAAACATGGCCAGTGCT+AGG + Chr4:52531467-52531486 MsG0480021040.01.T01:intron 50.0%
! TTGTCTGGAACTGGTCTCAG+TGG + Chr4:52531282-52531301 MsG0480021040.01.T01:intron 50.0%
!! AAGGTTTTGGCATCCCTTGG+AGG + Chr4:52532949-52532968 MsG0480021040.01.T01:three_prime_UTR 50.0%
!! ACAGAGGGAAGTGCTTATGG+AGG + Chr4:52529029-52529048 MsG0480021040.01.T01:CDS 50.0%
!! GGAGGCACATGACCTTTTTC+TGG - Chr4:52531519-52531538 None:intergenic 50.0%
!! TGCAAGGTTTTGGCATCCCT+TGG + Chr4:52532946-52532965 MsG0480021040.01.T01:three_prime_UTR 50.0%
!!! TCCTAGCACTGGCCATGTTT+TGG - Chr4:52531471-52531490 None:intergenic 50.0%
AACATGGCCAGTGCTAGGAC+CGG + Chr4:52531472-52531491 MsG0480021040.01.T01:intron 55.0%
AAGGTGGCTGGCACTTTAGC+TGG - Chr4:52530585-52530604 None:intergenic 55.0%
ACACACCCTCACACCATGAC+TGG + Chr4:52530932-52530951 MsG0480021040.01.T01:intron 55.0%
ACAGGTGGAACTCGCGGAAT+TGG + Chr4:52528762-52528781 MsG0480021040.01.T01:five_prime_UTR 55.0%
AGGTTGCTGTGGTGGTTGTC+TGG + Chr4:52531267-52531286 MsG0480021040.01.T01:intron 55.0%
CAGACAATCGCGCCTTCTTC+TGG - Chr4:52531564-52531583 None:intergenic 55.0%
CAGGTGGAACTCGCGGAATT+GGG + Chr4:52528763-52528782 MsG0480021040.01.T01:five_prime_UTR 55.0%
CCATTAGGCCAGAGGCTATC+AGG - Chr4:52530996-52531015 None:intergenic 55.0%
CCTCATCACACAAAGGACCG+AGG + Chr4:52532795-52532814 MsG0480021040.01.T01:three_prime_UTR 55.0%
CCTCGGTCCTTTGTGTGATG+AGG - Chr4:52532798-52532817 None:intergenic 55.0%
CCTGATAGCCTCTGGCCTAA+TGG + Chr4:52530993-52531012 MsG0480021040.01.T01:intron 55.0%
CTTGTCACAGGTGGAACTCG+CGG + Chr4:52528756-52528775 MsG0480021040.01.T01:five_prime_UTR 55.0%
GCGACCTTGTCGCCAGAAAA+AGG + Chr4:52531504-52531523 MsG0480021040.01.T01:intron 55.0%
GGATCACCTAGGCGTCTTAG+AGG - Chr4:52532616-52532635 None:intergenic 55.0%
GGCTATCAGGTCACCGCTAT+TGG - Chr4:52530983-52531002 None:intergenic 55.0%
GGTGAGGATTGCCCTCACTT+AGG + Chr4:52530878-52530897 MsG0480021040.01.T01:intron 55.0%
GTGTCGGGGAGAACCATTGA+TGG - Chr4:52532727-52532746 None:intergenic 55.0%
TCACACACACAATGGAGCCG+AGG - Chr4:52529406-52529425 None:intergenic 55.0%
TCGAATCCCGGTCTCGACAT+CGG - Chr4:52529382-52529401 None:intergenic 55.0%
TGACTCGAGTGGCCCAATAG+CGG + Chr4:52530967-52530986 MsG0480021040.01.T01:intron 55.0%
TTTCTTGTGGTGGCCAGCAG+CGG + Chr4:52531622-52531641 MsG0480021040.01.T01:intron 55.0%
! CATCTGGAGTGTGACTCGAG+TGG + Chr4:52530956-52530975 MsG0480021040.01.T01:intron 55.0%
! CTCAGTGGAGAAGGCACAAC+TGG + Chr4:52531297-52531316 MsG0480021040.01.T01:intron 55.0%
! CTGTGGTGGTTGTCTGGAAC+TGG + Chr4:52531273-52531292 MsG0480021040.01.T01:intron 55.0%
! GCTAAAGTGCCAGCCACCTT+AGG + Chr4:52530585-52530604 MsG0480021040.01.T01:intron 55.0%
! GGAACTGGTCTCAGTGGAGA+AGG + Chr4:52531288-52531307 MsG0480021040.01.T01:intron 55.0%
!! CGAACTCCTCTAAGACGCCT+AGG + Chr4:52532607-52532626 MsG0480021040.01.T01:CDS 55.0%
AGCGGTGACCTGATAGCCTC+TGG + Chr4:52530985-52531004 MsG0480021040.01.T01:intron 60.0%
AGGCGCGATTGTCTGTGTCG+TGG + Chr4:52531569-52531588 MsG0480021040.01.T01:intron 60.0%
CGAGACCGGGATTCGATCCT+CGG + Chr4:52529386-52529405 MsG0480021040.01.T01:intron 60.0%
GATCACACCGCTGCTAGGTG+TGG - Chr4:52531540-52531559 None:intergenic 60.0%
GCGGTGTGATCGCCAGAAGA+AGG + Chr4:52531549-52531568 MsG0480021040.01.T01:intron 60.0%
GGCGCGATTGTCTGTGTCGT+GGG + Chr4:52531570-52531589 MsG0480021040.01.T01:intron 60.0%
TCCGACTCCGATGTCGAGAC+CGG + Chr4:52529372-52529391 MsG0480021040.01.T01:intron 60.0%
TGGAGCCGAGGATCGAATCC+CGG - Chr4:52529394-52529413 None:intergenic 60.0%
TGTGCCTCCACACCTAGCAG+CGG + Chr4:52531530-52531549 MsG0480021040.01.T01:intron 60.0%
ATGGCCAGTGCTAGGACCGG+TGG + Chr4:52531475-52531494 MsG0480021040.01.T01:intron 65.0%
CACACCGCTGCTAGGTGTGG+AGG - Chr4:52531537-52531556 None:intergenic 65.0%
CCCGGTCTCGACATCGGAGT+CGG - Chr4:52529376-52529395 None:intergenic 65.0%
CCGACTCCGATGTCGAGACC+GGG + Chr4:52529373-52529392 MsG0480021040.01.T01:intron 65.0%
CTGGCGATCACACCGCTGCT+AGG - Chr4:52531545-52531564 None:intergenic 65.0%
TGGCCAGTGCTAGGACCGGT+GGG + Chr4:52531476-52531495 MsG0480021040.01.T01:intron 65.0%
CGGTTCATCGCAGCCGCTGC+TGG - Chr4:52531638-52531657 None:intergenic 70.0%
GCGGCTGCGATGAACCGCAC+TGG + Chr4:52531641-52531660 MsG0480021040.01.T01:intron 70.0%
GGCCAGTGCTAGGACCGGTG+GGG + Chr4:52531477-52531496 MsG0480021040.01.T01:intron 70.0%
ACAAGGTCGCCGCGCCCCAC+CGG - Chr4:52531494-52531513 None:intergenic 75.0%
CGCCCCACCGGTCCTAGCAC+TGG - Chr4:52531482-52531501 None:intergenic 75.0%
GTGCTAGGACCGGTGGGGCG+CGG + Chr4:52531482-52531501 MsG0480021040.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 52528579 52532988 52528579 ID=MsG0480021040.01;Name=MsG0480021040.01
Chr4 mRNA 52528579 52532988 52528579 ID=MsG0480021040.01.T01;Parent=MsG0480021040.01;Name=MsG0480021040.01.T01;_AED=0.44;_eAED=0.50;_QI=295|0.2|0.33|1|0.6|0.66|6|214|262
Chr4 exon 52528579 52528784 52528579 ID=MsG0480021040.01.T01:exon:810;Parent=MsG0480021040.01.T01
Chr4 exon 52528884 52529091 52528884 ID=MsG0480021040.01.T01:exon:811;Parent=MsG0480021040.01.T01
Chr4 exon 52529806 52530024 52529806 ID=MsG0480021040.01.T01:exon:812;Parent=MsG0480021040.01.T01
Chr4 exon 52530082 52530187 52530082 ID=MsG0480021040.01.T01:exon:813;Parent=MsG0480021040.01.T01
Chr4 exon 52531302 52531439 52531302 ID=MsG0480021040.01.T01:exon:814;Parent=MsG0480021040.01.T01
Chr4 exon 52532568 52532988 52532568 ID=MsG0480021040.01.T01:exon:815;Parent=MsG0480021040.01.T01
Chr4 five_prime_UTR 52528579 52528784 52528579 ID=MsG0480021040.01.T01:five_prime_utr;Parent=MsG0480021040.01.T01
Chr4 five_prime_UTR 52528884 52528972 52528884 ID=MsG0480021040.01.T01:five_prime_utr;Parent=MsG0480021040.01.T01
Chr4 CDS 52528973 52529091 52528973 ID=MsG0480021040.01.T01:cds;Parent=MsG0480021040.01.T01
Chr4 CDS 52529806 52530024 52529806 ID=MsG0480021040.01.T01:cds;Parent=MsG0480021040.01.T01
Chr4 CDS 52530082 52530187 52530082 ID=MsG0480021040.01.T01:cds;Parent=MsG0480021040.01.T01
Chr4 CDS 52531302 52531439 52531302 ID=MsG0480021040.01.T01:cds;Parent=MsG0480021040.01.T01
Chr4 CDS 52532568 52532774 52532568 ID=MsG0480021040.01.T01:cds;Parent=MsG0480021040.01.T01
Chr4 three_prime_UTR 52532775 52532988 52532775 ID=MsG0480021040.01.T01:three_prime_utr;Parent=MsG0480021040.01.T01
Gene Sequence

>MsG0480021040.01.T01

ATGGAATCATTGGGTTTTGAGGTTACTGGTTCTGTTTGTGATGTGTCAGTTCCACAACAGAGGGAAGTGCTTATGGAGGATGTTTCCTTTGTCTTCAATGGAAACTCAACATCCTTGCTGACAAACATTCGGAAGCCAATGACAGACTTCACAGCTGCAGAGTTTTCCAAACTCATTGATACCAATTTAGGATCCACTTTTCATATGTGCCAGCTTGCATATCCACTTCTCAAAGCATCAGGAGTGGGTAGTGTTGTCTTTGTATCTTCTGTTTCTGGTTTTGTCTCACTGAAGTCAATGTCTGTTCAAGGAGCAACAAAAGGTAATCTACGAATTCAGGGCAATCAATCAACTTACGAGAATCTAGCTTGTGAATGGGCAAAAGACAACATAAGGAGTAATGCAGTTGCACCTTGGTACATCAGAACTTCGATGGTAGAGCAGTGGAGAAGGCACAACTGGTTGAATGACAACTTGATGTGGAAGAACCGGATGAAGCACGATGAATGTGCACAACAGGATGGAAGTAGGCAAAAACTTCAACTGGTTGAGGAAATGGTACATGACAGAGATGTTTGTACGGTTCTGAGCAACAAAGACTATCTGGAAGAGGTGTACTCTCGAACTCCTCTAAGACGCCTAGGTGATCCAGCAGAAGTGTCTTCCCTTGTCGCCTTTCTTTGCTTACCAGCATCGTCATACATCACTGGGCAGATTATATGTTGGATGGAGGTATGTCCATCAATGGTTCTCCCCGACACACATCTAAGAACTGCATCTCAAATATAG
Protein sequence

>MsG0480021040.01.T01

MESLGFEVTGSVCDVSVPQQREVLMEDVSFVFNGNSTSLLTNIRKPMTDFTAAEFSKLIDTNLGSTFHMCQLAYPLLKASGVGSVVFVSSVSGFVSLKSMSVQGATKGNLRIQGNQSTYENLACEWAKDNIRSNAVAPWYIRTSMVEQWRRHNWLNDNLMWKNRMKHDECAQQDGSRQKLQLVEEMVHDRDVCTVLSNKDYLEEVYSRTPLRRLGDPAEVSSLVAFLCLPASSYITGQIICWMEVCPSMVLPDTHLRTASQI*