AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021149.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021149.01.T01 MTR_4g067300 80.606 330 46 4 3 325 110 428 3.24e-172 484
MsG0480021149.01.T01 MTR_4g120880 50.510 196 86 3 18 208 150 339 5.58e-50 170
MsG0480021149.01.T01 MTR_1g050760 57.522 113 46 1 90 200 64 176 1.50e-36 134
MsG0480021149.01.T01 MTR_4g120880 47.239 163 75 3 18 175 150 306 2.80e-35 130
MsG0480021149.01.T01 MTR_1g050760 57.522 113 46 1 90 200 179 291 2.86e-35 133
MsG0480021149.01.T01 MTR_6g004480 48.454 97 50 0 102 198 185 281 1.12e-22 99.0
MsG0480021149.01.T01 MTR_4g126140 38.793 116 68 1 88 200 609 724 6.45e-17 82.0
MsG0480021149.01.T01 MTR_6g008410 38.525 122 71 2 88 205 576 697 3.88e-16 79.7
MsG0480021149.01.T01 MTR_6g084410 34.328 134 71 2 88 204 640 773 6.01e-15 76.3
MsG0480021149.01.T01 MTR_1g475240 36.522 115 70 1 88 199 649 763 2.87e-14 73.9
MsG0480021149.01.T01 MTR_1g075190 36.522 115 70 1 88 199 649 763 2.87e-14 73.9
MsG0480021149.01.T01 MTR_2g100660 37.069 116 66 2 88 198 616 729 3.50e-11 64.7
MsG0480021149.01.T01 MTR_8g104340 39.815 108 58 2 86 186 496 603 5.35e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021149.01.T01 AT2G28480 58.577 239 77 5 2 233 102 325 2.39e-86 264
MsG0480021149.01.T01 AT4G13070 51.256 199 75 5 18 206 134 320 5.37e-51 172
MsG0480021149.01.T01 AT3G25440 50.794 126 60 1 90 213 43 168 3.17e-35 129
MsG0480021149.01.T01 AT3G25440 50.794 126 60 1 90 213 43 168 3.17e-35 129
MsG0480021149.01.T01 AT3G25440 50.794 126 60 1 90 213 43 168 3.17e-35 129
MsG0480021149.01.T01 AT3G25440 50.794 126 60 1 90 213 134 259 1.09e-34 130
MsG0480021149.01.T01 AT3G25440 50.794 126 60 1 90 213 198 323 2.58e-34 130
MsG0480021149.01.T01 AT3G27550 48.454 97 50 0 102 198 125 221 1.63e-23 100
MsG0480021149.01.T01 AT3G27550 48.454 97 50 0 102 198 125 221 1.63e-23 100
MsG0480021149.01.T01 AT3G27550 48.454 97 50 0 102 198 181 277 1.81e-23 101
MsG0480021149.01.T01 AT3G01370 31.754 211 112 7 88 292 598 782 6.43e-16 79.3
MsG0480021149.01.T01 AT3G18390 40.909 110 62 1 93 199 677 786 3.81e-15 76.6
MsG0480021149.01.T01 AT4G29750 37.500 112 67 1 92 200 670 781 1.98e-14 74.7
MsG0480021149.01.T01 AT4G29750 37.500 112 67 1 92 200 670 781 2.22e-14 74.3
MsG0480021149.01.T01 AT3G23070 30.769 208 133 4 88 286 657 862 5.01e-14 73.6
MsG0480021149.01.T01 AT4G14510 29.741 232 139 6 88 313 684 897 2.81e-13 71.2

Find 65 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAGACACGTTGCACTTTA+TGG 0.111475 4:+54382760 MsG0480021149.01.T01:CDS
TCCGAAGATAACTTTGAAAA+TGG 0.177566 4:+54382934 MsG0480021149.01.T01:CDS
ACAATTCTAGATTCTTAAAA+TGG 0.206248 4:-54383104 None:intergenic
CCACGTCGACTTGGTGTTAA+AGG 0.222422 4:+54380898 MsG0480021149.01.T01:CDS
GTGGGCAGAAGAGGATTATT+TGG 0.246172 4:+54382044 MsG0480021149.01.T01:intron
CGTTTCATAGGTGCTTGATA+TGG 0.332162 4:-54381018 None:intergenic
TTGAACTTAATCCTCTCTTC+AGG 0.345785 4:-54380949 None:intergenic
AGATACATTGTCGAAGAAAA+AGG 0.353569 4:+54382274 MsG0480021149.01.T01:CDS
TTCCACTGCATTCAAATAAT+AGG 0.356560 4:+54380869 None:intergenic
CTCGAGCGATTGCTCATACT+TGG 0.356817 4:-54382689 None:intergenic
TCTGAAGAAGATAGCATGTT+AGG 0.366578 4:+54382982 MsG0480021149.01.T01:CDS
AACAATGTAAGCATTGTCAT+TGG 0.401564 4:+54380976 MsG0480021149.01.T01:CDS
TGGAATACCGCCACTCAATC+TGG 0.405800 4:-54382174 None:intergenic
GGTATTCCAATTCACATCAT+AGG 0.417637 4:+54382188 MsG0480021149.01.T01:CDS
TGCTATCGCGGAGAAAGAAT+TGG 0.420544 4:+54382729 MsG0480021149.01.T01:CDS
TCTATACTCGACGGTCCAAT+TGG 0.434376 4:+54382808 MsG0480021149.01.T01:CDS
TGTACTTGACCAGGTTTACA+AGG 0.443148 4:-54382131 None:intergenic
TCATCGCCTATGATGTGAAT+TGG 0.451123 4:-54382194 None:intergenic
ATATGAAGTTGCTAAGGCTC+AGG 0.458126 4:+54381937 MsG0480021149.01.T01:CDS
TGTTTGTATATGCGTTTCAT+AGG 0.461839 4:-54381030 None:intergenic
AAGCAACGCTTCTTTGACTC+TGG 0.463622 4:-54381897 None:intergenic
CCGAAGATAACTTTGAAAAT+GGG 0.471535 4:+54382935 MsG0480021149.01.T01:CDS
ATATGCAAGCCTTGTAAACC+TGG 0.476189 4:+54382122 MsG0480021149.01.T01:CDS
TTCTCAATATGCATATGCAT+TGG 0.480039 4:+54382075 MsG0480021149.01.T01:CDS
TTCTAGATTCTTAAAATGGT+GGG 0.481363 4:-54383100 None:intergenic
TTCTTCGACAATGTATCTAT+CGG 0.490848 4:-54382269 None:intergenic
CACGTCGACTTGGTGTTAAA+GGG 0.493647 4:+54380899 MsG0480021149.01.T01:CDS
ATTATTTGGTTTGGTACTCA+AGG 0.497757 4:-54383186 None:intergenic
TAACTTCTAATCTCTAGTGA+TGG 0.500046 4:-54383142 None:intergenic
GACAAAGGATTGCGGTTGCT+AGG 0.502492 4:-54382787 None:intergenic
AGAAGATAGCATGTTAGGTT+CGG 0.505498 4:+54382987 MsG0480021149.01.T01:CDS
AGTTGCTAAGGCTCAGGGTC+CGG 0.505541 4:+54381943 MsG0480021149.01.T01:CDS
ATTCTAGATTCTTAAAATGG+TGG 0.509082 4:-54383101 None:intergenic
GATAATAGCTACTTGAATCA+AGG 0.509308 4:-54382867 None:intergenic
GGCAGAAGAGGATTATTTGG+AGG 0.521745 4:+54382047 MsG0480021149.01.T01:intron
CTCCTATTATTTGAATGCAG+TGG 0.529408 4:-54380871 None:intergenic
ACAAAGGATTGCGGTTGCTA+GGG 0.536661 4:-54382786 None:intergenic
TACAAACATCAAACATGCAC+TGG 0.537118 4:+54381045 MsG0480021149.01.T01:CDS
CGGTCCAATTGGAAGCTCCA+TGG 0.538336 4:+54382819 MsG0480021149.01.T01:CDS
AGGAGAGATCCACGTCGACT+TGG 0.541406 4:+54380889 MsG0480021149.01.T01:CDS
GTATGTTTACACATTGATGA+TGG 0.542862 4:-54383078 None:intergenic
TTGGAAGCTCCATGGAAAAG+AGG 0.544839 4:+54382827 MsG0480021149.01.T01:CDS
AACTTCTAATCTCTAGTGAT+GGG 0.546870 4:-54383141 None:intergenic
CAAGAACTTGCCAGATTGAG+TGG 0.554078 4:+54382164 MsG0480021149.01.T01:CDS
GCATACTCGTGTACTTGACC+AGG 0.555441 4:-54382140 None:intergenic
GCAGAAGAGGATTATTTGGA+GGG 0.573855 4:+54382048 MsG0480021149.01.T01:intron
CAAACGATATGAAGTTGCTA+AGG 0.586096 4:+54381931 MsG0480021149.01.T01:CDS
GAAAGTGCATGCTCAACCAC+AGG 0.592197 4:+54383054 MsG0480021149.01.T01:CDS
AAGAAGCGTTGCTTATTGAA+CGG 0.593905 4:+54381906 MsG0480021149.01.T01:CDS
TGCTAAGGCTCAGGGTCCGG+AGG 0.597395 4:+54381946 MsG0480021149.01.T01:CDS
TCTATCGGCGACATAACCTC+AGG 0.612455 4:-54382254 None:intergenic
TATGAAGTTGCTAAGGCTCA+GGG 0.615933 4:+54381938 MsG0480021149.01.T01:CDS
ACACATTGATGATGGACCTG+TGG 0.620794 4:-54383070 None:intergenic
AGAATCAGATTCCTCACAGA+CGG 0.625142 4:+54382900 MsG0480021149.01.T01:CDS
CCTTTAACACCAAGTCGACG+TGG 0.632722 4:-54380898 None:intergenic
TTCTGATAGCTCCGTCTGTG+AGG 0.633402 4:-54382911 None:intergenic
AGTTTGCTAATCCTGAAGAG+AGG 0.636129 4:+54380938 MsG0480021149.01.T01:CDS
CAGAAGAGGATTATTTGGAG+GGG 0.658122 4:+54382049 MsG0480021149.01.T01:intron
AATCCTTTGTCTATACTCGA+CGG 0.658898 4:+54382799 MsG0480021149.01.T01:CDS
GAGGCGCTTCATTGCTATCG+CGG 0.678644 4:+54382717 MsG0480021149.01.T01:CDS
AGCAATCGCTCGAGTCAGTG+AGG 0.693932 4:+54382698 MsG0480021149.01.T01:CDS
GGACCGTCGAGTATAGACAA+AGG 0.713950 4:-54382802 None:intergenic
AAAGAACTACATGCAACCTG+AGG 0.728340 4:+54382238 MsG0480021149.01.T01:CDS
GAACTTGCCAGATTGAGTGG+CGG 0.730594 4:+54382167 MsG0480021149.01.T01:CDS
CGAGTATAGACAAAGGATTG+CGG 0.752752 4:-54382795 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTGAACATTATTATATTT+AGG - Chr4:54381585-54381604 None:intergenic 15.0%
!! AATTTAGATTTAAATGTGTT+TGG - Chr4:54381165-54381184 None:intergenic 15.0%
!! TCATATCATTTAAAAAGAAT+TGG + Chr4:54382350-54382369 MsG0480021149.01.T01:intron 15.0%
!!! AAAATTTAGTTGATATAAAG+TGG + Chr4:54381353-54381372 MsG0480021149.01.T01:intron 15.0%
!!! GCATTTTTTTATGTATTATT+TGG - Chr4:54383203-54383222 None:intergenic 15.0%
!!! TTTTTATGTATTATTTGGTT+TGG - Chr4:54383198-54383217 None:intergenic 15.0%
!! ACAATTCTAGATTCTTAAAA+TGG - Chr4:54383107-54383126 None:intergenic 20.0%
!! CACATTTAAATCTAAATTGT+CGG + Chr4:54381167-54381186 MsG0480021149.01.T01:intron 20.0%
!! CTATAAGCTTATAGAATTTA+TGG + Chr4:54381676-54381695 MsG0480021149.01.T01:intron 20.0%
!! TAAAATTTAGTACAATGTCT+AGG - Chr4:54381853-54381872 None:intergenic 20.0%
!!! TCAAGAAAAAATGTAGTTTT+TGG - Chr4:54381445-54381464 None:intergenic 20.0%
!!! TTTTTCAATGATTTTGTGAA+TGG + Chr4:54382588-54382607 MsG0480021149.01.T01:intron 20.0%
! ATTCTAGATTCTTAAAATGG+TGG - Chr4:54383104-54383123 None:intergenic 25.0%
! TTCTAGATTCTTAAAATGGT+GGG - Chr4:54383103-54383122 None:intergenic 25.0%
!! ATAAGCTTATAGAGACTTTT+CGG - Chr4:54381668-54381687 None:intergenic 25.0%
!! CAAATTTTCGATTTCATTCA+AGG - Chr4:54383225-54383244 None:intergenic 25.0%
!! GACACAATAATATTTTATCG+TGG + Chr4:54382215-54382234 MsG0480021149.01.T01:CDS 25.0%
!!! AACTACATTTTTTCTTGATC+TGG + Chr4:54381447-54381466 MsG0480021149.01.T01:intron 25.0%
!!! TAATTCTCTTTTTTTCTCAC+AGG + Chr4:54382654-54382673 MsG0480021149.01.T01:intron 25.0%
AACGACATTATCTGAAGAAA+TGG + Chr4:54381996-54382015 MsG0480021149.01.T01:intron 30.0%
AACTTCTAATCTCTAGTGAT+GGG - Chr4:54383144-54383163 None:intergenic 30.0%
AGATACATTGTCGAAGAAAA+AGG + Chr4:54382274-54382293 MsG0480021149.01.T01:CDS 30.0%
ATATATGTTGATCTCATGAG+TGG + Chr4:54381269-54381288 MsG0480021149.01.T01:intron 30.0%
GATAATAGCTACTTGAATCA+AGG - Chr4:54382870-54382889 None:intergenic 30.0%
GTATGTTTACACATTGATGA+TGG - Chr4:54383081-54383100 None:intergenic 30.0%
TAACTTCTAATCTCTAGTGA+TGG - Chr4:54383145-54383164 None:intergenic 30.0%
TAATAATCACGCTTGATAGA+AGG + Chr4:54381530-54381549 MsG0480021149.01.T01:intron 30.0%
TGTTTGTATATGCGTTTCAT+AGG - Chr4:54381033-54381052 None:intergenic 30.0%
TTCTCAATATGCATATGCAT+TGG + Chr4:54382075-54382094 MsG0480021149.01.T01:CDS 30.0%
TTCTTCGACAATGTATCTAT+CGG - Chr4:54382272-54382291 None:intergenic 30.0%
TTGTCAAATAGCTGTTATAG+CGG + Chr4:54382488-54382507 MsG0480021149.01.T01:intron 30.0%
! AACAATGTAAGCATTGTCAT+TGG + Chr4:54380976-54380995 MsG0480021149.01.T01:CDS 30.0%
! AGAGTTCTAATATCTACAAG+TGG + Chr4:54382025-54382044 MsG0480021149.01.T01:intron 30.0%
! ATGATTTTGTGAATGGTTGT+TGG + Chr4:54382595-54382614 MsG0480021149.01.T01:intron 30.0%
! CCCATTTTCAAAGTTATCTT+CGG - Chr4:54382938-54382957 None:intergenic 30.0%
! CCGAAGATAACTTTGAAAAT+GGG + Chr4:54382935-54382954 MsG0480021149.01.T01:CDS 30.0%
! GAGTTCTAATATCTACAAGT+GGG + Chr4:54382026-54382045 MsG0480021149.01.T01:intron 30.0%
! TCCGAAGATAACTTTGAAAA+TGG + Chr4:54382934-54382953 MsG0480021149.01.T01:CDS 30.0%
! TTGACAGTGTTGTTAAATAG+CGG + Chr4:54382390-54382409 MsG0480021149.01.T01:intron 30.0%
! TTGGTAATATAACCTGAGAT+GGG + Chr4:54382614-54382633 MsG0480021149.01.T01:intron 30.0%
!! ATTATTTGGTTTGGTACTCA+AGG - Chr4:54383189-54383208 None:intergenic 30.0%
!!! TGATTGACAATGCTGTTTTT+TGG + Chr4:54382555-54382574 MsG0480021149.01.T01:intron 30.0%
AAAGTTATTTGACCCATCTC+AGG - Chr4:54382629-54382648 None:intergenic 35.0%
AATCCTTTGTCTATACTCGA+CGG + Chr4:54382799-54382818 MsG0480021149.01.T01:CDS 35.0%
AGAAGATAGCATGTTAGGTT+CGG + Chr4:54382987-54383006 MsG0480021149.01.T01:CDS 35.0%
ATTGTCAAACTGAGATTCGA+AGG + Chr4:54381475-54381494 MsG0480021149.01.T01:intron 35.0%
CAAACGATATGAAGTTGCTA+AGG + Chr4:54381931-54381950 MsG0480021149.01.T01:CDS 35.0%
CATCATTTGCTTAATGCTCA+TGG + Chr4:54381227-54381246 MsG0480021149.01.T01:intron 35.0%
CATGAGCATTAAGCAAATGA+TGG - Chr4:54381229-54381248 None:intergenic 35.0%
GGTATTCCAATTCACATCAT+AGG + Chr4:54382188-54382207 MsG0480021149.01.T01:CDS 35.0%
TACAAACATCAAACATGCAC+TGG + Chr4:54381045-54381064 MsG0480021149.01.T01:CDS 35.0%
TCTGAAGAAGATAGCATGTT+AGG + Chr4:54382982-54383001 MsG0480021149.01.T01:CDS 35.0%
TTGAACTTAATCCTCTCTTC+AGG - Chr4:54380952-54380971 None:intergenic 35.0%
! ATCATGATTCCTCTTTTCCA+TGG - Chr4:54382839-54382858 None:intergenic 35.0%
! ATTTACACTTGAGTGTTGCA+TGG - Chr4:54381402-54381421 None:intergenic 35.0%
!! AAGAAGCGTTGCTTATTGAA+CGG + Chr4:54381906-54381925 MsG0480021149.01.T01:CDS 35.0%
!! GTTGGTAATATAACCTGAGA+TGG + Chr4:54382613-54382632 MsG0480021149.01.T01:intron 35.0%
!!! TGACAATGCTGTTTTTTGGA+GGG + Chr4:54382559-54382578 MsG0480021149.01.T01:intron 35.0%
!!! TTGACAATGCTGTTTTTTGG+AGG + Chr4:54382558-54382577 MsG0480021149.01.T01:intron 35.0%
AAAGAACTACATGCAACCTG+AGG + Chr4:54382238-54382257 MsG0480021149.01.T01:CDS 40.0%
AGAATCAGATTCCTCACAGA+CGG + Chr4:54382900-54382919 MsG0480021149.01.T01:CDS 40.0%
ATAACCACATGTGTCAGTGT+TGG + Chr4:54381119-54381138 MsG0480021149.01.T01:intron 40.0%
ATATGAAGTTGCTAAGGCTC+AGG + Chr4:54381937-54381956 MsG0480021149.01.T01:CDS 40.0%
CAGAAGAGGATTATTTGGAG+GGG + Chr4:54382049-54382068 MsG0480021149.01.T01:intron 40.0%
CATAGACACGTTGCACTTTA+TGG + Chr4:54382760-54382779 MsG0480021149.01.T01:CDS 40.0%
CGAGTATAGACAAAGGATTG+CGG - Chr4:54382798-54382817 None:intergenic 40.0%
CGTTTCATAGGTGCTTGATA+TGG - Chr4:54381021-54381040 None:intergenic 40.0%
GATATAGCACTCTTACGTAG+CGG + Chr4:54382512-54382531 MsG0480021149.01.T01:intron 40.0%
GCAGAAGAGGATTATTTGGA+GGG + Chr4:54382048-54382067 MsG0480021149.01.T01:intron 40.0%
GGTAAAACCAGATGGTTTGA+CGG + Chr4:54381967-54381986 MsG0480021149.01.T01:intron 40.0%
GTAAAACCAGATGGTTTGAC+GGG + Chr4:54381968-54381987 MsG0480021149.01.T01:intron 40.0%
TAAAACCAGATGGTTTGACG+GGG + Chr4:54381969-54381988 MsG0480021149.01.T01:intron 40.0%
TATGAAGTTGCTAAGGCTCA+GGG + Chr4:54381938-54381957 MsG0480021149.01.T01:CDS 40.0%
TCATCGCCTATGATGTGAAT+TGG - Chr4:54382197-54382216 None:intergenic 40.0%
TGTACTTGACCAGGTTTACA+AGG - Chr4:54382134-54382153 None:intergenic 40.0%
! ATATGCAAGCCTTGTAAACC+TGG + Chr4:54382122-54382141 MsG0480021149.01.T01:CDS 40.0%
! ATTTTCTCAACGAGCACTCA+AGG - Chr4:54381813-54381832 None:intergenic 40.0%
! GCATTAAGCAAATGATGGAG+TGG - Chr4:54381224-54381243 None:intergenic 40.0%
! TTTTCCATGGAGCTTCCAAT+TGG - Chr4:54382826-54382845 None:intergenic 40.0%
! TTTTCTCAACGAGCACTCAA+GGG - Chr4:54381812-54381831 None:intergenic 40.0%
!! AAATGTGTTTGGTGTCTGAC+AGG - Chr4:54381154-54381173 None:intergenic 40.0%
!! AGTTTGCTAATCCTGAAGAG+AGG + Chr4:54380938-54380957 MsG0480021149.01.T01:CDS 40.0%
!! ATGACTCTGATTTTAACCCC+AGG + Chr4:54381874-54381893 MsG0480021149.01.T01:intron 40.0%
!! CTAAATTGTCGGTGCTACAT+AGG + Chr4:54381178-54381197 MsG0480021149.01.T01:intron 40.0%
!!! AAACCATCTGGTTTTACCTC+CGG - Chr4:54381965-54381984 None:intergenic 40.0%
AAAACCAGATGGTTTGACGG+GGG + Chr4:54381970-54381989 MsG0480021149.01.T01:intron 45.0%
AAGCAACGCTTCTTTGACTC+TGG - Chr4:54381900-54381919 None:intergenic 45.0%
ACAAAGGATTGCGGTTGCTA+GGG - Chr4:54382789-54382808 None:intergenic 45.0%
ATGGAGTGGTATGCTGCATA+CGG - Chr4:54381210-54381229 None:intergenic 45.0%
CAAGAACTTGCCAGATTGAG+TGG + Chr4:54382164-54382183 MsG0480021149.01.T01:CDS 45.0%
GGCAGAAGAGGATTATTTGG+AGG + Chr4:54382047-54382066 MsG0480021149.01.T01:intron 45.0%
GTGGGCAGAAGAGGATTATT+TGG + Chr4:54382044-54382063 MsG0480021149.01.T01:intron 45.0%
GTTTCCAACACTGACACATG+TGG - Chr4:54381126-54381145 None:intergenic 45.0%
TATCTACAAGTGGGCAGAAG+AGG + Chr4:54382035-54382054 MsG0480021149.01.T01:intron 45.0%
TCTATACTCGACGGTCCAAT+TGG + Chr4:54382808-54382827 MsG0480021149.01.T01:CDS 45.0%
TGAGTGGTTAAGTGTGTGCT+TGG + Chr4:54381285-54381304 MsG0480021149.01.T01:intron 45.0%
TGCTATCGCGGAGAAAGAAT+TGG + Chr4:54382729-54382748 MsG0480021149.01.T01:CDS 45.0%
TTGGAAGCTCCATGGAAAAG+AGG + Chr4:54382827-54382846 MsG0480021149.01.T01:CDS 45.0%
TTTCTCAACGAGCACTCAAG+GGG - Chr4:54381811-54381830 None:intergenic 45.0%
!! ACACATTGATGATGGACCTG+TGG - Chr4:54383073-54383092 None:intergenic 45.0%
!! CACGTCGACTTGGTGTTAAA+GGG + Chr4:54380899-54380918 MsG0480021149.01.T01:CDS 45.0%
AGTGGTATGCTGCATACGGT+TGG - Chr4:54381206-54381225 None:intergenic 50.0%
CCTTTAACACCAAGTCGACG+TGG - Chr4:54380901-54380920 None:intergenic 50.0%
CTCGAGCGATTGCTCATACT+TGG - Chr4:54382692-54382711 None:intergenic 50.0%
GAACTTGCCAGATTGAGTGG+CGG + Chr4:54382167-54382186 MsG0480021149.01.T01:CDS 50.0%
GACAAAGGATTGCGGTTGCT+AGG - Chr4:54382790-54382809 None:intergenic 50.0%
GCATACTCGTGTACTTGACC+AGG - Chr4:54382143-54382162 None:intergenic 50.0%
GGACCGTCGAGTATAGACAA+AGG - Chr4:54382805-54382824 None:intergenic 50.0%
TCTATCGGCGACATAACCTC+AGG - Chr4:54382257-54382276 None:intergenic 50.0%
TGGAATACCGCCACTCAATC+TGG - Chr4:54382177-54382196 None:intergenic 50.0%
TTCTGATAGCTCCGTCTGTG+AGG - Chr4:54382914-54382933 None:intergenic 50.0%
! GAAAGTGCATGCTCAACCAC+AGG + Chr4:54383054-54383073 MsG0480021149.01.T01:CDS 50.0%
!! CCACGTCGACTTGGTGTTAA+AGG + Chr4:54380898-54380917 MsG0480021149.01.T01:CDS 50.0%
!! GTTTGGTGTCTGACAGGTGT+CGG - Chr4:54381148-54381167 None:intergenic 50.0%
ACGCTTCTTTGACTCTGGCC+TGG - Chr4:54381895-54381914 None:intergenic 55.0%
AGCAATCGCTCGAGTCAGTG+AGG + Chr4:54382698-54382717 MsG0480021149.01.T01:CDS 55.0%
AGTTGCTAAGGCTCAGGGTC+CGG + Chr4:54381943-54381962 MsG0480021149.01.T01:CDS 55.0%
CGCTTCTTTGACTCTGGCCT+GGG - Chr4:54381894-54381913 None:intergenic 55.0%
CGGTCCAATTGGAAGCTCCA+TGG + Chr4:54382819-54382838 MsG0480021149.01.T01:CDS 55.0%
GCTTCTTTGACTCTGGCCTG+GGG - Chr4:54381893-54381912 None:intergenic 55.0%
GGTCCGGAGGTAAAACCAGA+TGG + Chr4:54381959-54381978 MsG0480021149.01.T01:intron 55.0%
! AGGAGAGATCCACGTCGACT+TGG + Chr4:54380889-54380908 MsG0480021149.01.T01:CDS 55.0%
! GAGGCGCTTCATTGCTATCG+CGG + Chr4:54382717-54382736 MsG0480021149.01.T01:CDS 55.0%
ACCAGATGGTTTGACGGGGG+AGG + Chr4:54381973-54381992 MsG0480021149.01.T01:intron 60.0%
TCCTCCCCCGTCAAACCATC+TGG - Chr4:54381977-54381996 None:intergenic 60.0%
TGCTAAGGCTCAGGGTCCGG+AGG + Chr4:54381946-54381965 MsG0480021149.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 54380874 54383249 54380874 ID=MsG0480021149.01;Name=MsG0480021149.01
Chr4 mRNA 54380874 54383249 54380874 ID=MsG0480021149.01.T01;Parent=MsG0480021149.01;Name=MsG0480021149.01.T01;_AED=0.18;_eAED=0.18;_QI=0|0.33|0.25|1|0.33|0.5|4|115|325
Chr4 exon 54380874 54381076 54380874 ID=MsG0480021149.01.T01:exon:20177;Parent=MsG0480021149.01.T01
Chr4 exon 54381896 54381967 54381896 ID=MsG0480021149.01.T01:exon:20178;Parent=MsG0480021149.01.T01
Chr4 exon 54382052 54382295 54382052 ID=MsG0480021149.01.T01:exon:20179;Parent=MsG0480021149.01.T01
Chr4 exon 54382676 54383249 54382676 ID=MsG0480021149.01.T01:exon:20180;Parent=MsG0480021149.01.T01
Chr4 CDS 54380874 54381076 54380874 ID=MsG0480021149.01.T01:cds;Parent=MsG0480021149.01.T01
Chr4 CDS 54381896 54381967 54381896 ID=MsG0480021149.01.T01:cds;Parent=MsG0480021149.01.T01
Chr4 CDS 54382052 54382295 54382052 ID=MsG0480021149.01.T01:cds;Parent=MsG0480021149.01.T01
Chr4 CDS 54382676 54383134 54382676 ID=MsG0480021149.01.T01:cds;Parent=MsG0480021149.01.T01
Chr4 three_prime_UTR 54383135 54383249 54383135 ID=MsG0480021149.01.T01:three_prime_utr;Parent=MsG0480021149.01.T01
Gene Sequence

>MsG0480021149.01.T01

CTGCATTCAAATAATAGGAGAGATCCACGTCGACTTGGTGTTAAAGGGAAGAAGAAAAAGCAGAAGTTTGCTAATCCTGAAGAGAGGATTAAGTTCAAGATTAACAATGTAAGCATTGTCATTGGATTCTATGTTTGTTTGTTTCCATATCAAGCACCTATGAAACGCATATACAAACATCAAACATGCACTGGTAGTGACACGCCAGAGTCAAAGAAGCGTTGCTTATTGAACGGCTCAAACGATATGAAGTTGCTAAGGCTCAGGGTCCGGAGAAGAGGATTATTTGGAGGGGTTATTCTCAATATGCATATGCATTGGAAGAAACATGAGACTGTTAAGTGCATATGCAAGCCTTGTAAACCTGGTCAAGTACACGAGTATGCACAAGAACTTGCCAGATTGAGTGGCGGTATTCCAATTCACATCATAGGCGATGACACAATAATATTTTATCGTGGAAAGAACTACATGCAACCTGAGGTTATGTCGCCGATAGATACATTGTCGAAGAAAAAGGCACTTGAAAAATCCAAGTATGAGCAATCGCTCGAGTCAGTGAGGCGCTTCATTGCTATCGCGGAGAAAGAATTGGAGCTATATCATAGACACGTTGCACTTTATGGCGACCCTAGCAACCGCAATCCTTTGTCTATACTCGACGGTCCAATTGGAAGCTCCATGGAAAAGAGGAATCATGATAAAAAGAACCTTGATTCAAGTAGCTATTATCTTTCAGAGACAGAATCAGATTCCTCACAGACGGAGCTATCAGAATCCGAAGATAACTTTGAAAATGGGAACTTGTCAATGAGTGAATCAGATTCTGAAGAAGATAGCATGTTAGGTTCGGATGATGATCAAGAAAGAGAAGTATATTTAACTAAAATGCAAGATGAAAGTGCATGCTCAACCACAGGTCCATCATCAATGTGTAAACATACCCACCATTTTAAGAATCTAGAATTGTTATCTTAA
Protein sequence

>MsG0480021149.01.T01

LHSNNRRDPRRLGVKGKKKKQKFANPEERIKFKINNVSIVIGFYVCLFPYQAPMKRIYKHQTCTGSDTPESKKRCLLNGSNDMKLLRLRVRRRGLFGGVILNMHMHWKKHETVKCICKPCKPGQVHEYAQELARLSGGIPIHIIGDDTIIFYRGKNYMQPEVMSPIDTLSKKKALEKSKYEQSLESVRRFIAIAEKELELYHRHVALYGDPSNRNPLSILDGPIGSSMEKRNHDKKNLDSSSYYLSETESDSSQTELSESEDNFENGNLSMSESDSEEDSMLGSDDDQEREVYLTKMQDESACSTTGPSSMCKHTHHFKNLELLS*