AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021198.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021198.01.T01 MTR_4g068870 66.387 119 12 1 1 91 89 207 1.04e-46 151
MsG0480021198.01.T01 MTR_4g068870 60.241 83 9 1 91 149 117 199 1.10e-23 92.0
MsG0480021198.01.T01 MTR_4g068870 66.387 119 12 1 1 91 172 290 4.43e-46 152
MsG0480021198.01.T01 MTR_4g068870 61.017 118 17 2 1 90 1 117 3.22e-38 132
MsG0480021198.01.T01 MTR_4g068870 60.241 83 9 1 91 149 200 282 3.75e-23 92.4
MsG0480021198.01.T01 MTR_4g068870 58.025 81 10 1 91 147 29 109 8.60e-20 83.6
MsG0480021198.01.T01 MTR_4g068870 66.387 119 12 1 1 91 218 336 1.27e-45 152
MsG0480021198.01.T01 MTR_4g068870 61.017 118 17 2 1 90 54 170 7.52e-38 132
MsG0480021198.01.T01 MTR_4g068870 60.241 83 9 1 91 149 246 328 7.97e-23 92.4
MsG0480021198.01.T01 MTR_4g068870 58.025 81 10 1 91 147 82 162 1.54e-19 83.6
MsG0480021198.01.T01 MTR_4g068870 66.387 119 12 1 1 91 225 343 1.40e-45 152
MsG0480021198.01.T01 MTR_4g068870 61.017 118 17 2 1 90 54 170 8.27e-38 132
MsG0480021198.01.T01 MTR_4g068870 60.241 83 9 1 91 149 253 335 8.34e-23 92.4
MsG0480021198.01.T01 MTR_4g068870 58.025 81 10 1 91 147 82 162 1.61e-19 83.6
MsG0480021198.01.T01 MTR_0026s0210 66.387 119 12 1 1 91 225 343 1.93e-45 152
MsG0480021198.01.T01 MTR_0026s0210 60.526 114 16 2 1 86 54 166 1.45e-35 126
MsG0480021198.01.T01 MTR_0026s0210 60.494 81 8 1 91 147 253 333 2.85e-22 90.9
MsG0480021198.01.T01 MTR_0026s0210 58.025 81 10 1 91 147 82 162 8.79e-21 87.0
MsG0480021198.01.T01 MTR_4g068860 57.798 109 18 1 1 81 49 157 6.73e-35 119
MsG0480021198.01.T01 MTR_4g068860 71.429 84 0 1 91 150 77 160 6.03e-32 112
MsG0480021198.01.T01 MTR_4g068860 82.500 40 7 0 1 40 49 88 3.79e-17 73.2
MsG0480021198.01.T01 MTR_5g041610 38.095 105 39 2 1 80 43 146 6.87e-11 57.4
MsG0480021198.01.T01 MTR_5g081000 37.143 105 40 2 1 80 42 145 6.89e-11 57.0
MsG0480021198.01.T01 MTR_1g011540 37.143 105 40 2 1 80 42 145 7.65e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021198.01.T01 AT2G16060 51.852 108 24 1 1 80 49 156 3.08e-29 105
MsG0480021198.01.T01 AT2G16060 56.627 83 12 1 92 150 78 160 2.11e-21 85.1
MsG0480021198.01.T01 AT3G10520 37.500 112 42 1 1 84 46 157 6.06e-17 73.6

Find 33 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGACAAAGTTTGCACTTT+TGG 0.206749 4:-55022833 MsG0480021198.01.T01:CDS
ATAGCTGCTGACCACATTTC+AGG 0.302066 4:+55025782 None:intergenic
TTCTCTGACCGTGACTTTAC+CGG 0.339739 4:+55023075 None:intergenic
AAAAGATTCAAATGTTCCTT+TGG 0.354441 4:-55026400 MsG0480021198.01.T01:CDS
CATTTCAGCTTTGATGGCAT+TGG 0.371433 4:+55025724 None:intergenic
CTTATTCAATTCACAAAGAA+AGG 0.383146 4:+55022674 None:intergenic
TATAAACTAGAGAGTTTAAG+AGG 0.389161 4:+55022702 None:intergenic
AACTAGAGAGTTTAAGAGGA+AGG 0.427518 4:+55022706 None:intergenic
ATAGCCGGTGACCACATTTC+AGG 0.433187 4:+55022790 None:intergenic
TGAAATGTGGTCAGCAGCTA+TGG 0.462270 4:-55025780 MsG0480021198.01.T01:CDS
GCAGTTCAATTGCGGAAATC+CGG 0.465498 4:-55023094 MsG0480021198.01.T01:CDS
CCCCATGCATTCTTCATAGC+CGG 0.478259 4:+55022775 None:intergenic
ATGGCATGAGGCTTGAGCTT+AGG 0.487005 4:+55026369 None:intergenic
TATTTAATAACTATATAAAG+TGG 0.498129 4:+55022635 None:intergenic
TGCCATGTCTGTCTTTCTCA+TGG 0.508395 4:-55026352 MsG0480021198.01.T01:intron
AGCTTAGGATATTGCTCCAA+AGG 0.510122 4:+55026384 None:intergenic
GCAGTTCAATTGAGGAATGC+TGG 0.517566 4:-55026193 MsG0480021198.01.T01:intron
CACCGGCTATGAAGAATGCA+TGG 0.521161 4:-55022777 MsG0480021198.01.T01:CDS
GGGAGAAGCTCATGATCAGC+TGG 0.522507 4:-55025747 MsG0480021198.01.T01:CDS
GGGAGAAGCTTATGATCAGC+TGG 0.524272 4:-55022755 MsG0480021198.01.T01:CDS
GTGAATCAGCAGTTCAATTG+AGG 0.534730 4:-55026201 MsG0480021198.01.T01:CDS
AGCAGCTATGGAAAATGCAT+GGG 0.541494 4:-55025768 MsG0480021198.01.T01:CDS
CAGCAGCTATGGAAAATGCA+TGG 0.548685 4:-55025769 MsG0480021198.01.T01:CDS
ACCGGCTATGAAGAATGCAT+GGG 0.592597 4:-55022776 MsG0480021198.01.T01:CDS
AGTACCTGAAATGTGGTCAC+CGG 0.611768 4:-55022794 MsG0480021198.01.T01:CDS
GTGAATCAGCAGTTCAATTG+CGG 0.612574 4:-55023102 MsG0480021198.01.T01:CDS
AAGAAGCAGTACCTGAAATG+TGG 0.626355 4:-55022801 MsG0480021198.01.T01:CDS
AAGAAGCATTACCTGAAATG+TGG 0.626355 4:-55025793 MsG0480021198.01.T01:CDS
GCGGAAATCCGGTAAAGTCA+CGG 0.634999 4:-55023083 MsG0480021198.01.T01:intron
AGAAAGACAGACATGGCATG+AGG 0.665594 4:+55026357 None:intergenic
GCAGCTATGGAAAATGCATG+GGG 0.701648 4:-55025767 MsG0480021198.01.T01:CDS
CCGGCTATGAAGAATGCATG+GGG 0.704265 4:-55022775 MsG0480021198.01.T01:CDS
TACCATGAGAAAGACAGACA+TGG 0.729739 4:+55026350 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAATAAAATAAATAA+AGG + Chr4:55024974-55024993 None:intergenic 0.0%
!!! TTTATTTATTTTATTTTATT+TGG - Chr4:55024973-55024992 MsG0480021198.01.T01:intron 0.0%
!! TATTTAATAACTATATAAAG+TGG + Chr4:55026354-55026373 None:intergenic 10.0%
!! TTATTACAGTAAAAAAAATT+TGG - Chr4:55023872-55023891 MsG0480021198.01.T01:intron 10.0%
!! TTCTTATATATATATTCAAA+TGG + Chr4:55025831-55025850 None:intergenic 10.0%
!! TTTATTATTATATACATTGT+TGG + Chr4:55024420-55024439 None:intergenic 10.0%
!!! AATAAGTATATTTTTTTACT+AGG - Chr4:55026010-55026029 MsG0480021198.01.T01:intron 10.0%
!!! ATAAGTATATTTTTTTACTA+GGG - Chr4:55026011-55026030 MsG0480021198.01.T01:intron 10.0%
!!! CAAATTTTTACTTATATTTT+AGG - Chr4:55023793-55023812 MsG0480021198.01.T01:intron 10.0%
!!! TTATTAAATAAATGAGTTTT+TGG - Chr4:55026364-55026383 MsG0480021198.01.T01:CDS 10.0%
!!! TTTAATTTTTTGATTTTGTA+AGG - Chr4:55026132-55026151 MsG0480021198.01.T01:intron 10.0%
!!! TTTTATTTTATTTGGTTAAA+TGG - Chr4:55024981-55025000 MsG0480021198.01.T01:intron 10.0%
!! AAAAAAAGAATGTGTATATT+TGG - Chr4:55023026-55023045 MsG0480021198.01.T01:intron 15.0%
!! GTAATTAATCAATAAACTAA+TGG + Chr4:55022683-55022702 None:intergenic 15.0%
!! TCAATATAAATTGTTGTATT+TGG - Chr4:55023734-55023753 MsG0480021198.01.T01:intron 15.0%
!! TTACATTAAAATTTGACATA+AGG - Chr4:55026066-55026085 MsG0480021198.01.T01:intron 15.0%
!! TTTATGTTATGTAAATTTCA+TGG + Chr4:55024371-55024390 None:intergenic 15.0%
!!! TATTTTAAAAGAAATGCATA+AGG + Chr4:55023681-55023700 None:intergenic 15.0%
!!! TTTTTACTTATATTTTAGGA+TGG - Chr4:55023797-55023816 MsG0480021198.01.T01:intron 15.0%
!! ATTATCTAAAAACATGTCAT+TGG - Chr4:55023844-55023863 MsG0480021198.01.T01:intron 20.0%
!! CAATAATAGTTAAATCTCAA+TGG - Chr4:55024308-55024327 MsG0480021198.01.T01:intron 20.0%
!! TAAAACATAGTCTAATTAAG+AGG + Chr4:55023340-55023359 None:intergenic 20.0%
!! TAGCAATAAATGAATCAATT+TGG - Chr4:55024829-55024848 MsG0480021198.01.T01:intron 20.0%
!! TATTAATTGATCTTCTAGTA+GGG + Chr4:55023095-55023114 None:intergenic 20.0%
!! TCAAAATATCATTTCTCAAT+AGG - Chr4:55024257-55024276 MsG0480021198.01.T01:intron 20.0%
!! TCAACAAAAGTTAATGTATT+TGG + Chr4:55023773-55023792 None:intergenic 20.0%
!! TCATAATTCATTCCATAATT+TGG + Chr4:55025094-55025113 None:intergenic 20.0%
!! TCTAATTCAGTAACTAAATT+TGG - Chr4:55025694-55025713 MsG0480021198.01.T01:CDS 20.0%
!! TCTACTACACATATTTAAAA+TGG + Chr4:55025963-55025982 None:intergenic 20.0%
!! TGTTATGAAAATGACATTAA+TGG - Chr4:55024556-55024575 MsG0480021198.01.T01:intron 20.0%
!! TTAAAATTTGACATAAGGTT+TGG - Chr4:55026071-55026090 MsG0480021198.01.T01:intron 20.0%
!! TTATTAATTGATCTTCTAGT+AGG + Chr4:55023096-55023115 None:intergenic 20.0%
!! TTCATTGTGTACTATATATA+TGG - Chr4:55022935-55022954 MsG0480021198.01.T01:intron 20.0%
!! TTTACATTATTCAATGATCT+AGG + Chr4:55023522-55023541 None:intergenic 20.0%
!! TTTGTTGACAAATCTTTAAA+CGG - Chr4:55024527-55024546 MsG0480021198.01.T01:intron 20.0%
!!! TCTTTTTCTAGTATTAACAA+AGG - Chr4:55023003-55023022 MsG0480021198.01.T01:intron 20.0%
!!! TTGTTTTGTTATGTAATGTA+AGG - Chr4:55023141-55023160 MsG0480021198.01.T01:intron 20.0%
!!! TTTCATTTTATTATTGGCAT+GGG - Chr4:55023589-55023608 MsG0480021198.01.T01:intron 20.0%
!!! TTTTCATTTTATTATTGGCA+TGG - Chr4:55023588-55023607 MsG0480021198.01.T01:intron 20.0%
! AAAAGATTCAAAAGTTCCTT+TGG - Chr4:55025563-55025582 MsG0480021198.01.T01:intron 25.0%
! AAAAGATTCAAATGTTCCTT+TGG - Chr4:55022586-55022605 MsG0480021198.01.T01:three_prime_UTR 25.0%
! AAAGCTATCTAATGAAAACT+TGG + Chr4:55024196-55024215 None:intergenic 25.0%
! AATAGTTAAATCTCAATGGT+TGG - Chr4:55024312-55024331 MsG0480021198.01.T01:intron 25.0%
! ATATATATTCAAATGGTGAG+TGG + Chr4:55025824-55025843 None:intergenic 25.0%
! ATATGTTACATTATTCCTAC+CGG - Chr4:55024644-55024663 MsG0480021198.01.T01:intron 25.0%
! ATGGACTTACTCAATAAAAA+AGG + Chr4:55023624-55023643 None:intergenic 25.0%
! CACTAATGTAGATTAAAAGA+TGG - Chr4:55023951-55023970 MsG0480021198.01.T01:intron 25.0%
! CTTATTCAATTCACAAAGAA+AGG + Chr4:55026315-55026334 None:intergenic 25.0%
! GAATCAAGCTTGAAAAAATT+AGG - Chr4:55025931-55025950 MsG0480021198.01.T01:intron 25.0%
! GCAATAACAAAATAATTAGC+TGG + Chr4:55025858-55025877 None:intergenic 25.0%
! GCATGTTTCCTATTAATATT+GGG - Chr4:55024688-55024707 MsG0480021198.01.T01:intron 25.0%
! TAATCAAACTTGAAGAAGTT+AGG - Chr4:55022828-55022847 MsG0480021198.01.T01:CDS 25.0%
! TAATCTCATTGATACGATTA+CGG + Chr4:55023916-55023935 None:intergenic 25.0%
! TATAAACTAGAGAGTTTAAG+AGG + Chr4:55026287-55026306 None:intergenic 25.0%
! TGATTTATATCTGTTGCTAT+TGG - Chr4:55023426-55023445 MsG0480021198.01.T01:intron 25.0%
! TTTAGTTACTGAATTAGAGA+CGG + Chr4:55025692-55025711 None:intergenic 25.0%
! TTTCCTATTAATATTGGGTT+CGG - Chr4:55024693-55024712 MsG0480021198.01.T01:intron 25.0%
!! ATACGACTAGTCAAAAATTT+GGG - Chr4:55024866-55024885 MsG0480021198.01.T01:intron 25.0%
!! ATTTATATCTGTTGCTATTG+GGG - Chr4:55023428-55023447 MsG0480021198.01.T01:intron 25.0%
!! GATTTATATCTGTTGCTATT+GGG - Chr4:55023427-55023446 MsG0480021198.01.T01:intron 25.0%
!! GTTACAATTTTGTAGGATAA+AGG + Chr4:55025173-55025192 None:intergenic 25.0%
!! TATACGACTAGTCAAAAATT+TGG - Chr4:55024865-55024884 MsG0480021198.01.T01:intron 25.0%
!! TTTTTACTTACATTTTGCGA+TGG + Chr4:55023710-55023729 None:intergenic 25.0%
!!! TACTTATATTTTAGGATGGA+GGG - Chr4:55023801-55023820 MsG0480021198.01.T01:intron 25.0%
!!! TTACTTATATTTTAGGATGG+AGG - Chr4:55023800-55023819 MsG0480021198.01.T01:intron 25.0%
!!! TTTTTTCATTTCAGCTTTGA+TGG + Chr4:55023271-55023290 None:intergenic 25.0%
AAAGCTATACTCGTATATTG+AGG - Chr4:55024592-55024611 MsG0480021198.01.T01:intron 30.0%
AACATAGTCTAATTAAGAGG+AGG + Chr4:55023337-55023356 None:intergenic 30.0%
AATTTCATGGATAGAGTAAG+AGG + Chr4:55024358-55024377 None:intergenic 30.0%
ACAAACTTATTGAAGTTGAG+AGG + Chr4:55023378-55023397 None:intergenic 30.0%
ACATAGTCTAATTAAGAGGA+GGG + Chr4:55023336-55023355 None:intergenic 30.0%
ACTATTACCAAATGTCAACA+TGG - Chr4:55025065-55025084 MsG0480021198.01.T01:intron 30.0%
AGTCATACAGTTAATTAGTC+CGG + Chr4:55024666-55024685 None:intergenic 30.0%
ATGCTTAACCATTTGTCTTT+GGG + Chr4:55023993-55024012 None:intergenic 30.0%
CCAGAACTGATCAAAATAAA+TGG + Chr4:55023643-55023662 None:intergenic 30.0%
CTAATTAACGTATGTGATTG+TGG + Chr4:55025231-55025250 None:intergenic 30.0%
GAATTATGAATGACTCCTAT+TGG - Chr4:55025105-55025124 MsG0480021198.01.T01:intron 30.0%
GACTAATTAACTGTATGACT+TGG - Chr4:55024666-55024685 MsG0480021198.01.T01:intron 30.0%
GGCATGTTTCCTATTAATAT+TGG - Chr4:55024687-55024706 MsG0480021198.01.T01:intron 30.0%
GTAATAGTCAAGTATCATAC+CGG + Chr4:55025053-55025072 None:intergenic 30.0%
GTAATCGTATCAATGAGATT+AGG - Chr4:55023915-55023934 MsG0480021198.01.T01:intron 30.0%
TAATAGTCAAGTATCATACC+GGG + Chr4:55025052-55025071 None:intergenic 30.0%
TAATCAACGTAAGCAAACAA+AGG + Chr4:55024938-55024957 None:intergenic 30.0%
TATCTAATCACCTCATTTGA+AGG + Chr4:55024625-55024644 None:intergenic 30.0%
TATGCTTAACCATTTGTCTT+TGG + Chr4:55023994-55024013 None:intergenic 30.0%
TGCATGTGCATAAAAAACAT+AGG + Chr4:55024290-55024309 None:intergenic 30.0%
TTTGGATTTGTCTTCAACAT+TGG + Chr4:55023313-55023332 None:intergenic 30.0%
! CTTCTTTTATGGTCTCAAAA+GGG + Chr4:55023179-55023198 None:intergenic 30.0%
! GTGTATATTTGGAATCTTGA+TGG - Chr4:55023037-55023056 MsG0480021198.01.T01:intron 30.0%
! TGATTGTGGATTATTGTGAT+GGG + Chr4:55025217-55025236 None:intergenic 30.0%
! TGTAAAAGATGAGCATTTTG+AGG - Chr4:55022872-55022891 MsG0480021198.01.T01:intron 30.0%
! TTCAGGTAATGCTTCTTTTA+TGG + Chr4:55023190-55023209 None:intergenic 30.0%
!! AACACTTACCCTTTAGAATA+TGG - Chr4:55025256-55025275 MsG0480021198.01.T01:intron 30.0%
!! ACACTTACCCTTTAGAATAT+GGG - Chr4:55025257-55025276 MsG0480021198.01.T01:intron 30.0%
!!! CCATTTATTTTGATCAGTTC+TGG - Chr4:55023640-55023659 MsG0480021198.01.T01:intron 30.0%
!!! CTATTTTTACTCTTGCCTAT+TGG + Chr4:55024235-55024254 None:intergenic 30.0%
!!! TATTTTGATCAGTTCTGGAT+TGG - Chr4:55023645-55023664 MsG0480021198.01.T01:intron 30.0%
!!! TGATGGTGTTACAATTTTGT+AGG + Chr4:55025180-55025199 None:intergenic 30.0%
AACTAGAGAGTTTAAGAGGA+AGG + Chr4:55026283-55026302 None:intergenic 35.0%
AAGAAGAATTCTGCAGAGTT+AGG - Chr4:55025347-55025366 MsG0480021198.01.T01:intron 35.0%
AATAGTCAAGTATCATACCG+GGG + Chr4:55025051-55025070 None:intergenic 35.0%
ACTAGTCAAAAATTTGGGTC+AGG - Chr4:55024871-55024890 MsG0480021198.01.T01:intron 35.0%
AGGAAGTTAACCTTCAAATG+AGG - Chr4:55024612-55024631 MsG0480021198.01.T01:intron 35.0%
ATACAGTTAATTAGTCCGGT+AGG + Chr4:55024662-55024681 None:intergenic 35.0%
ATAGAGTAAGAGGTTCAAGT+GGG + Chr4:55024348-55024367 None:intergenic 35.0%
CAACCGAACCCAATATTAAT+AGG + Chr4:55024699-55024718 None:intergenic 35.0%
CATAAAGAAGCAATGTGATG+AGG + Chr4:55024728-55024747 None:intergenic 35.0%
CTAGTCAAAAATTTGGGTCA+GGG - Chr4:55024872-55024891 MsG0480021198.01.T01:intron 35.0%
TATACGTGGTGAACACAAAA+TGG + Chr4:55025012-55025031 None:intergenic 35.0%
TGACAAAGTCAAAGCTTGAA+TGG + Chr4:55025794-55025813 None:intergenic 35.0%
TGCTTAACCATTTGTCTTTG+GGG + Chr4:55023992-55024011 None:intergenic 35.0%
! CAAAGTGCCCATATTCTAAA+GGG + Chr4:55025267-55025286 None:intergenic 35.0%
! CTAAAAATAGGTGCTATACG+TGG + Chr4:55025026-55025045 None:intergenic 35.0%
! GCTTCTTTTATGGTCTCAAA+AGG + Chr4:55023180-55023199 None:intergenic 35.0%
! GTGATTGTGGATTATTGTGA+TGG + Chr4:55025218-55025237 None:intergenic 35.0%
! TACTTACATTTTGCGATGGA+GGG + Chr4:55023706-55023725 None:intergenic 35.0%
! TGATCTTCTAGTAGGGTTTT+CGG + Chr4:55023088-55023107 None:intergenic 35.0%
! TTACTTACATTTTGCGATGG+AGG + Chr4:55023707-55023726 None:intergenic 35.0%
!! AAGAAGCATTACCTGAAATG+TGG - Chr4:55023193-55023212 MsG0480021198.01.T01:intron 35.0%
!! CACGTATAGCACCTATTTTT+AGG - Chr4:55025024-55025043 MsG0480021198.01.T01:intron 35.0%
!! TCAGTTCTGGATTGGAAATT+TGG - Chr4:55023653-55023672 MsG0480021198.01.T01:intron 35.0%
!! TTCAGGTACTGCTTCTTTTA+TGG + Chr4:55026182-55026201 None:intergenic 35.0%
!!! TACACCAGTTTTGAAATGAG+TGG + Chr4:55022856-55022875 None:intergenic 35.0%
!!! TGGGGTTTGCTAAGTTTTAA+AGG - Chr4:55023446-55023465 MsG0480021198.01.T01:intron 35.0%
AAGAAGCAGTACCTGAAATG+TGG - Chr4:55026185-55026204 MsG0480021198.01.T01:intron 40.0%
AATGACTCCTATTGGCATGA+AGG - Chr4:55025113-55025132 MsG0480021198.01.T01:intron 40.0%
AATTGACCCTTCATGCCAAT+AGG + Chr4:55025123-55025142 None:intergenic 40.0%
AGCAGCTATGGAAAATGCAT+GGG - Chr4:55023218-55023237 MsG0480021198.01.T01:intron 40.0%
AGCTTAGGATATTGCTCCAA+AGG + Chr4:55022605-55022624 None:intergenic 40.0%
ATAGTCAAGTATCATACCGG+GGG + Chr4:55025050-55025069 None:intergenic 40.0%
ATGACTCCTATTGGCATGAA+GGG - Chr4:55025114-55025133 MsG0480021198.01.T01:intron 40.0%
GAATCCGTCTCTAATGTACT+CGG + Chr4:55025721-55025740 None:intergenic 40.0%
GATAGAGTAAGAGGTTCAAG+TGG + Chr4:55024349-55024368 None:intergenic 40.0%
GTCTAATTAAGAGGAGGGTT+TGG + Chr4:55023331-55023350 None:intergenic 40.0%
GTGAATCAGCAGTTCAATTG+AGG - Chr4:55022785-55022804 MsG0480021198.01.T01:CDS 40.0%
GTGAATCAGCAGTTCAATTG+CGG - Chr4:55022785-55022804 MsG0480021198.01.T01:CDS 40.0%
TACCATGAGAAAGACAGACA+TGG + Chr4:55022639-55022658 None:intergenic 40.0%
TCAACATGGCAGCCAAATTA+TGG - Chr4:55025079-55025098 MsG0480021198.01.T01:intron 40.0%
TGAAGAACAAGAAGCTCTTG+TGG - Chr4:55025304-55025323 MsG0480021198.01.T01:intron 40.0%
TGGATGCTAAGTGTAAAGCA+AGG + Chr4:55022663-55022682 None:intergenic 40.0%
TTCCTTAATCAATGCCTCTG+AGG - Chr4:55024104-55024123 MsG0480021198.01.T01:intron 40.0%
! CATTTCAGCTTTGATGGCAT+TGG + Chr4:55023265-55023284 None:intergenic 40.0%
! CCAAAGTGCCCATATTCTAA+AGG + Chr4:55025268-55025287 None:intergenic 40.0%
! GGTGACAAAGTTTGCACTTT+TGG - Chr4:55026153-55026172 MsG0480021198.01.T01:intron 40.0%
! TGTAGTAGACGAGCATTTTG+AGG - Chr4:55025974-55025993 MsG0480021198.01.T01:intron 40.0%
! TTGTGATGGGAGTGAGAAAA+TGG + Chr4:55025204-55025223 None:intergenic 40.0%
!! CCTTTAGAATATGGGCACTT+TGG - Chr4:55025265-55025284 MsG0480021198.01.T01:intron 40.0%
!! GAGAACAGTTTTTGAGCTGA+TGG + Chr4:55025537-55025556 None:intergenic 40.0%
AACCATGCCCCAAAGACAAA+TGG - Chr4:55023982-55024001 MsG0480021198.01.T01:intron 45.0%
AAGCTCTTGTGGTGAAGTCA+TGG - Chr4:55025315-55025334 MsG0480021198.01.T01:intron 45.0%
ACCGGCTATGAAGAATGCAT+GGG - Chr4:55026210-55026229 MsG0480021198.01.T01:intron 45.0%
ACGCACAGTGGTAAACAAGT+TGG - Chr4:55024898-55024917 MsG0480021198.01.T01:intron 45.0%
AGAAAGACAGACATGGCATG+AGG + Chr4:55022632-55022651 None:intergenic 45.0%
AGTACCTGAAATGTGGTCAC+CGG - Chr4:55026192-55026211 MsG0480021198.01.T01:intron 45.0%
AGTCAAAGCTTGAATGGTCG+TGG + Chr4:55025788-55025807 None:intergenic 45.0%
ATAGCTGCTGACCACATTTC+AGG + Chr4:55023207-55023226 None:intergenic 45.0%
CAGCAGCTATGGAAAATGCA+TGG - Chr4:55023217-55023236 MsG0480021198.01.T01:intron 45.0%
CTTACCATGAGAGACAGACA+TGG + Chr4:55025616-55025635 None:intergenic 45.0%
GCAGCTATGGAAAATGCATG+GGG - Chr4:55023219-55023238 MsG0480021198.01.T01:intron 45.0%
GCAGTTCAATTGAGGAATGC+TGG - Chr4:55022793-55022812 MsG0480021198.01.T01:CDS 45.0%
GCAGTTCAATTGCGGAAATC+CGG - Chr4:55025892-55025911 MsG0480021198.01.T01:intron 45.0%
GGGAGTGAGAAAATGGTTGA+TGG + Chr4:55025197-55025216 None:intergenic 45.0%
TGAAATGTGGTCAGCAGCTA+TGG - Chr4:55023206-55023225 MsG0480021198.01.T01:intron 45.0%
TGCCATGTCTGTCTTTCTCA+TGG - Chr4:55022634-55022653 MsG0480021198.01.T01:three_prime_UTR 45.0%
TGGACCGAGTACATTAGAGA+CGG - Chr4:55025714-55025733 MsG0480021198.01.T01:CDS 45.0%
TTCTCTGACCGTGACTTTAC+CGG + Chr4:55025914-55025933 None:intergenic 45.0%
TTGCTAACCAATGTCCTCAG+AGG + Chr4:55024121-55024140 None:intergenic 45.0%
TTGGCTGCCATGTTGACATT+TGG + Chr4:55025075-55025094 None:intergenic 45.0%
! ATCAATGCCTCTGAGGACAT+TGG - Chr4:55024111-55024130 MsG0480021198.01.T01:intron 45.0%
!! AACCATTTGTCTTTGGGGCA+TGG + Chr4:55023987-55024006 None:intergenic 45.0%
!! GGTGCCACTCATTTCAAAAC+TGG - Chr4:55022849-55022868 MsG0480021198.01.T01:intron 45.0%
!! GTCCTCAGAGGCATTGATTA+AGG + Chr4:55024109-55024128 None:intergenic 45.0%
!!! AGCTTGGTGTTTTGCTCCAA+AGG + Chr4:55025582-55025601 None:intergenic 45.0%
!! AAAAGAATAAAAATTTAAAA+AGG - Chr4:55024148-55024167 MsG0480021198.01.T01:intron 5.0%
!!! ATTTTTTTTCATTTTATTAT+TGG - Chr4:55023583-55023602 MsG0480021198.01.T01:intron 5.0%
!!! TTTAAATTTTTATTCTTTTA+AGG + Chr4:55024147-55024166 None:intergenic 5.0%
!!! TTTTTTTTTATTTTTTATAG+AGG + Chr4:55024795-55024814 None:intergenic 5.0%
ATAGCCGGTGACCACATTTC+AGG + Chr4:55026199-55026218 None:intergenic 50.0%
ATGGCATGAGGCTTGAGCTT+AGG + Chr4:55022620-55022639 None:intergenic 50.0%
CATACCGGGGGCCTAAAAAT+AGG + Chr4:55025038-55025057 None:intergenic 50.0%
CATGCCATGTCTGTCTCTCA+TGG - Chr4:55025609-55025628 MsG0480021198.01.T01:intron 50.0%
CCCCATGCATTCTTCATAGC+CGG + Chr4:55026214-55026233 None:intergenic 50.0%
CCGGCTATGAAGAATGCATG+GGG - Chr4:55026211-55026230 MsG0480021198.01.T01:intron 50.0%
CGCAGTCAACTTGCACCAAT+AGG - Chr4:55024217-55024236 MsG0480021198.01.T01:intron 50.0%
GCGGAAATCCGGTAAAGTCA+CGG - Chr4:55025903-55025922 MsG0480021198.01.T01:intron 50.0%
GGGAGAAGCTTATGATCAGC+TGG - Chr4:55026231-55026250 MsG0480021198.01.T01:intron 50.0%
TGAGAGACAGACATGGCATG+AGG + Chr4:55025609-55025628 None:intergenic 50.0%
! CACCGGCTATGAAGAATGCA+TGG - Chr4:55026209-55026228 MsG0480021198.01.T01:intron 50.0%
!!! AGCACCTATTTTTAGGCCCC+CGG - Chr4:55025031-55025050 MsG0480021198.01.T01:intron 50.0%
CATGGCATGAGGCTTGAGCT+TGG + Chr4:55022621-55022640 None:intergenic 55.0%
GGGAGAAGCTCATGATCAGC+TGG - Chr4:55023239-55023258 MsG0480021198.01.T01:intron 55.0%
ACGCGAGTCGTGCATCAGTG+CGG - Chr4:55022971-55022990 MsG0480021198.01.T01:intron 60.0%
GGGTCAGGGCTTACGCACAG+TGG - Chr4:55024886-55024905 MsG0480021198.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 55022572 55026436 55022572 ID=MsG0480021198.01;Name=MsG0480021198.01
Chr4 mRNA 55022572 55026436 55022572 ID=MsG0480021198.01.T01;Parent=MsG0480021198.01;Name=MsG0480021198.01.T01;_AED=0.03;_eAED=0.03;_QI=0|0.5|0.42|1|0.66|0.57|7|145|150
Chr4 exon 55022572 55022854 55022572 ID=MsG0480021198.01.T01:exon:18807;Parent=MsG0480021198.01.T01
Chr4 exon 55023084 55023128 55023084 ID=MsG0480021198.01.T01:exon:18806;Parent=MsG0480021198.01.T01
Chr4 exon 55025694 55025845 55025694 ID=MsG0480021198.01.T01:exon:18805;Parent=MsG0480021198.01.T01
Chr4 exon 55026194 55026227 55026194 ID=MsG0480021198.01.T01:exon:18804;Parent=MsG0480021198.01.T01
Chr4 exon 55026353 55026436 55026353 ID=MsG0480021198.01.T01:exon:18803;Parent=MsG0480021198.01.T01
Chr4 CDS 55026353 55026436 55026353 ID=MsG0480021198.01.T01:cds;Parent=MsG0480021198.01.T01
Chr4 CDS 55026194 55026227 55026194 ID=MsG0480021198.01.T01:cds;Parent=MsG0480021198.01.T01
Chr4 CDS 55025694 55025845 55025694 ID=MsG0480021198.01.T01:cds;Parent=MsG0480021198.01.T01
Chr4 CDS 55023084 55023128 55023084 ID=MsG0480021198.01.T01:cds;Parent=MsG0480021198.01.T01
Chr4 CDS 55022717 55022854 55022717 ID=MsG0480021198.01.T01:cds;Parent=MsG0480021198.01.T01
Chr4 three_prime_UTR 55022572 55022716 55022572 ID=MsG0480021198.01.T01:three_prime_utr;Parent=MsG0480021198.01.T01
Gene Sequence

>MsG0480021198.01.T01

ATGTTCTCATTCTTAAAAGATTCAAATGTTCCTTTGGAGCAATATCCTAAGCTCAAGCCTCATGCCATGTCTGTCTTTCTCATGACATGTGAATCAGCAGTTCAATTGAGGAATGCTGGTAACAAAGCAAGCCCTTTTGAGACCATAAAAGAAGCATTACCTGAAATGTGGTCAGCAGCTATGGAAAATGCATGGGGAGAAGCTCATGATCAGCTGGCCAATGCCATCAAAGCTGAAATGAAAAAAGCTGATCATGATCATCAGACCAATACATGTGAATCAGCAGTTCAATTGCGGAAATCCGGTAAAGTCACGGTGACAAAGTTTGCACTTTTGGAGACCATAAAAGAAGCAGTACCTGAAATGTGGTCACCGGCTATGAAGAATGCATGGGGAGAAGCTTATGATCAGCTGGTCAATGCTATCAAATCTGAAATGAAACCTTCCTCTTAA
Protein sequence

>MsG0480021198.01.T01

MFSFLKDSNVPLEQYPKLKPHAMSVFLMTCESAVQLRNAGNKASPFETIKEALPEMWSAAMENAWGEAHDQLANAIKAEMKKADHDHQTNTCESAVQLRKSGKVTVTKFALLETIKEAVPEMWSPAMKNAWGEAYDQLVNAIKSEMKPSS*