AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021281.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021281.01.T01 MTR_4g070670 82.420 529 36 6 1 473 1 528 0.0 866
MsG0480021281.01.T01 MTR_3g117080 66.224 527 122 6 1 473 45 569 0.0 699
MsG0480021281.01.T01 MTR_6g015630 66.224 527 122 6 1 473 37 561 0.0 698
MsG0480021281.01.T01 MTR_6g015630 66.224 527 122 6 1 473 1 525 0.0 698
MsG0480021281.01.T01 MTR_3g117080 62.939 456 114 5 1 402 37 491 0.0 571
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021281.01.T01 AT2G16370 63.320 518 140 6 5 473 3 519 0.0 666
MsG0480021281.01.T01 AT2G16370 63.320 518 140 6 5 473 3 519 0.0 666
MsG0480021281.01.T01 AT4G34570 63.261 509 135 6 16 473 33 540 0.0 662
MsG0480021281.01.T01 AT4G34570 62.405 524 140 8 1 473 48 565 0.0 661
MsG0480021281.01.T01 AT4G34570 63.261 509 135 6 16 473 11 518 0.0 661
MsG0480021281.01.T01 AT4G34570 63.261 509 135 6 16 473 11 518 0.0 661
MsG0480021281.01.T01 AT2G16370 57.178 404 124 5 5 359 3 406 9.63e-160 459
MsG0480021281.01.T01 AT2G21550 47.913 503 205 8 1 459 1 490 7.78e-159 459
MsG0480021281.01.T01 AT2G21550 47.714 503 203 8 1 459 1 487 1.42e-157 456
MsG0480021281.01.T01 AT4G34570 50.141 355 121 7 1 304 48 397 2.73e-113 340

Find 141 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGACTTAGGACCTGTTTA+TGG 0.167594 4:-56254004 MsG0480021281.01.T01:CDS
TGTTACCTTGGAACCCAATT+TGG 0.173503 4:+56254952 None:intergenic
GAATCAATGTCTTTCTTCTT+TGG 0.179182 4:+56252638 None:intergenic
GGTGATTTCATCCATGTTAT+TGG 0.194436 4:-56252862 MsG0480021281.01.T01:CDS
CAGGAGGTGCTGAGATATTT+AGG 0.204783 4:-56255434 MsG0480021281.01.T01:intron
TCTTTCCCTTTGGTGGAAAA+TGG 0.225183 4:-56255215 MsG0480021281.01.T01:CDS
TTCTTGTCAGACCTTGTTCC+AGG 0.238248 4:-56252883 MsG0480021281.01.T01:intron
CTCAATGCTTGCTTCAATTT+CGG 0.256504 4:+56255292 None:intergenic
GACTGGTACCTTGTCCAAAT+TGG 0.260218 4:-56254966 MsG0480021281.01.T01:CDS
TGGGTTTCAGTGGAGGCATT+TGG 0.270702 4:-56253984 MsG0480021281.01.T01:CDS
ATTGAGAAAGTATTTCTTAC+AGG 0.270992 4:-56255453 MsG0480021281.01.T01:CDS
GTGATTTCATCCATGTTATT+GGG 0.271279 4:-56252861 MsG0480021281.01.T01:CDS
CGCATAAGATGCAATATTAA+AGG 0.274032 4:+56253529 None:intergenic
AGAAATGAAAATGGCTGTTT+AGG 0.293845 4:-56252564 MsG0480021281.01.T01:exon
AGATTCTCGGTCCCTTCTTC+AGG 0.300605 4:-56252533 MsG0480021281.01.T01:three_prime_UTR
CACATACCTTGGTTGTTAAC+AGG 0.305161 4:+56254837 None:intergenic
TCCATCCGATCTTAAATTAA+TGG 0.314416 4:-56253750 MsG0480021281.01.T01:CDS
AGCTTCTGCGCAACATTCTT+AGG 0.331012 4:-56256619 MsG0480021281.01.T01:intron
GGGTTTCAGTGGAGGCATTT+GGG 0.333424 4:-56253983 MsG0480021281.01.T01:CDS
TCAGAAGATAGAAATGAAAA+TGG 0.338404 4:-56252573 MsG0480021281.01.T01:CDS
ACTGGTACCTTGTCCAAATT+GGG 0.342374 4:-56254965 MsG0480021281.01.T01:CDS
TGTAATTGCAACCCGAGATA+TGG 0.344709 4:-56255760 MsG0480021281.01.T01:CDS
GTGACTTAGGACCTGTTTAT+GGG 0.353136 4:-56254003 MsG0480021281.01.T01:CDS
ACACATACCGGAAAAGGTTT+TGG 0.364921 4:+56252778 None:intergenic
TTCAATTTCGGTAATATGAA+TGG 0.386895 4:+56255304 None:intergenic
ATTCAAATGCTCTAAATTTG+AGG 0.400169 4:-56255103 MsG0480021281.01.T01:intron
CGATTTCGAATGAGAACTTA+AGG 0.400186 4:+56256649 None:intergenic
ATGGTATACGTCTTTCCCTT+TGG 0.404422 4:-56255225 MsG0480021281.01.T01:CDS
CAATCATGTGAAGCCTTTGC+AGG 0.414004 4:-56252821 MsG0480021281.01.T01:CDS
TTAACACTTATGTGCGTGTA+AGG 0.422680 4:-56255178 MsG0480021281.01.T01:CDS
TTAGGAATCTCTGAGATTCT+CGG 0.424428 4:-56252546 MsG0480021281.01.T01:exon
ACAGCATTGATTTGAAAGAA+AGG 0.438955 4:-56254033 MsG0480021281.01.T01:CDS
TTGGTAAGTCCTTGCGGATT+CGG 0.441647 4:+56255788 None:intergenic
CTCCTGAGAACAGACCTCTC+AGG 0.442621 4:-56255602 MsG0480021281.01.T01:CDS
TTTGAATTATCATAAAGAAC+TGG 0.442793 4:+56255119 None:intergenic
CCCCTGAGAGGTCTGTTCTC+AGG 0.443742 4:+56255600 None:intergenic
GTATACGTCTTTCCCTTTGG+TGG 0.445493 4:-56255222 MsG0480021281.01.T01:CDS
GACCTGCGCAAACATGTGGC+AGG 0.448822 4:+56253718 None:intergenic
ACATTCACACATACCGGAAA+AGG 0.449470 4:+56252772 None:intergenic
TCTCTTTACAATAATAATCA+TGG 0.450370 4:+56252463 None:intergenic
TTCTCAATTGACTGACAGTA+AGG 0.450965 4:+56255468 None:intergenic
TAATATTATTCTAACTCGCT+CGG 0.450992 4:-56255571 MsG0480021281.01.T01:CDS
TGGAGGAGCTGTTCCTGCAA+AGG 0.453382 4:+56252808 None:intergenic
ATCTTCTGCTATGGAACTGT+TGG 0.454227 4:-56255499 MsG0480021281.01.T01:CDS
AGGATGATACGTCGATCATC+AGG 0.455799 4:+56253785 None:intergenic
CAGCATTGATTTGAAAGAAA+GGG 0.461268 4:-56254032 MsG0480021281.01.T01:CDS
TACATGATTGCTCATGTTTG+TGG 0.463144 4:-56253497 MsG0480021281.01.T01:intron
GATTCTTCTGTAATCGTCAA+TGG 0.463195 4:-56255831 MsG0480021281.01.T01:CDS
CGATCTGCAGACATGGGCCT+TGG 0.464348 4:-56253557 MsG0480021281.01.T01:CDS
CTGTTTATGGGTTTCAGTGG+AGG 0.468596 4:-56253991 MsG0480021281.01.T01:CDS
CTCCACTGAAACCCATAAAC+AGG 0.471180 4:+56253992 None:intergenic
ATTTCTCTGTATTTCATCCA+TGG 0.471299 4:-56255244 MsG0480021281.01.T01:CDS
GCCATTAATTTAAGATCGGA+TGG 0.474265 4:+56253749 None:intergenic
CCCCTGCCACATGTTTGCGC+AGG 0.478653 4:-56253720 MsG0480021281.01.T01:intron
CATCTCTGAAGGCACAGTTA+AGG 0.484145 4:-56255002 MsG0480021281.01.T01:CDS
TTGATCAGTAGGCAATGTCC+AGG 0.484656 4:+56255713 None:intergenic
AATATTATTCTAACTCGCTC+GGG 0.486412 4:-56255570 MsG0480021281.01.T01:CDS
ACAACGGTGACATCTGATCC+TGG 0.487083 4:-56255672 MsG0480021281.01.T01:CDS
GAAAGGGAAGAGGGTGACTT+AGG 0.488528 4:-56254016 MsG0480021281.01.T01:CDS
TTTGAATTAGTTGAAATGGT+TGG 0.490476 4:-56252364 MsG0480021281.01.T01:three_prime_UTR
GTAAAGAGATTTATATAATG+TGG 0.494409 4:-56252449 MsG0480021281.01.T01:three_prime_UTR
GCATAAGATGCAATATTAAA+GGG 0.494613 4:+56253530 None:intergenic
GTAATTGCAACCCGAGATAT+GGG 0.495137 4:-56255759 MsG0480021281.01.T01:CDS
GACCTGTTTATGGGTTTCAG+TGG 0.497745 4:-56253994 MsG0480021281.01.T01:CDS
CCTTAGCAATACCCATATCT+CGG 0.498705 4:+56255748 None:intergenic
TTGTCATGGGTAGAAAATCA+TGG 0.498855 4:-56255635 MsG0480021281.01.T01:CDS
ACAACGGCATTCTTCTTCCC+AGG 0.502136 4:+56255654 None:intergenic
TCCTGAGAACAGACCTCTCA+GGG 0.502484 4:-56255601 MsG0480021281.01.T01:CDS
TGGTAGTGTATCTTCTGCTA+TGG 0.504974 4:-56255508 MsG0480021281.01.T01:CDS
GCAGATAATGTTCTTATATG+TGG 0.505340 4:-56255528 MsG0480021281.01.T01:CDS
GCTGCTGATTTCAAGCTCAT+AGG 0.507026 4:-56252608 MsG0480021281.01.T01:CDS
TTCATTTCTATCTTCTGATG+AGG 0.509155 4:+56252578 None:intergenic
CTAACAGCTGATCAAATCCT+TGG 0.511531 4:+56253834 None:intergenic
AAAGTGTAACAGCCTGAAGA+AGG 0.512898 4:+56252521 None:intergenic
CTTGTCCAAATTGGGTTCCA+AGG 0.517978 4:-56254957 MsG0480021281.01.T01:intron
ATATGAATGGCTTCACATCC+AGG 0.518251 4:+56255317 None:intergenic
GTCACCACTCACCAGGCTGT+TGG 0.520095 4:-56252417 MsG0480021281.01.T01:three_prime_UTR
GAAGAAGAATGCCGTTGTCA+TGG 0.523764 4:-56255649 MsG0480021281.01.T01:CDS
CTGTTACACTTTCTTAAACA+AGG 0.524986 4:-56252510 MsG0480021281.01.T01:three_prime_UTR
TTCTGTAATCGTCAATGGAA+TGG 0.530871 4:-56255826 MsG0480021281.01.T01:CDS
AAGAAGAATGCCGTTGTCAT+GGG 0.532642 4:-56255648 MsG0480021281.01.T01:CDS
CTAAGGATGGAAAATTACCC+TGG 0.535736 4:-56255731 MsG0480021281.01.T01:CDS
CATGATGACTACTCCGGCCA+AGG 0.536981 4:-56253851 MsG0480021281.01.T01:CDS
AGTGGAGGCATTTGGGTGCA+AGG 0.537908 4:-56253976 MsG0480021281.01.T01:intron
CAGCTGATCAAATCCTTGGC+CGG 0.540194 4:+56253838 None:intergenic
CTTAGCAATACCCATATCTC+GGG 0.540562 4:+56255749 None:intergenic
GATATGGGTATTGCTAAGGA+TGG 0.541923 4:-56255744 MsG0480021281.01.T01:CDS
AAGTTCTCATTCGAAATCGT+TGG 0.542175 4:-56256645 MsG0480021281.01.T01:five_prime_UTR
AACTGCTTGGTAAGTCCTTG+CGG 0.543079 4:+56255782 None:intergenic
ATGCAGTTCTATGTGGCAAA+TGG 0.543190 4:-56253605 MsG0480021281.01.T01:intron
TTCTCATTCGAAATCGTTGG+AGG 0.544083 4:-56256642 MsG0480021281.01.T01:five_prime_UTR
GTATCAACGATCTGCAGACA+TGG 0.546321 4:-56253564 MsG0480021281.01.T01:CDS
AGGTTCAGATTCCACTGCTA+TGG 0.546491 4:-56255859 MsG0480021281.01.T01:intron
CTGAGAGGTCTGTTCTCAGG+AGG 0.546791 4:+56255603 None:intergenic
TGATTTCATCCATGTTATTG+GGG 0.547049 4:-56252860 MsG0480021281.01.T01:CDS
CCGAGATATGGGTATTGCTA+AGG 0.548713 4:-56255748 MsG0480021281.01.T01:CDS
CACAGTTAAGGACGATAGGA+CGG 0.549458 4:-56254990 MsG0480021281.01.T01:CDS
CATGTGCATCCCCAATAACA+TGG 0.552050 4:+56252851 None:intergenic
CCTGCGCAAACATGTGGCAG+GGG 0.552311 4:+56253720 None:intergenic
GAGACTTGTCACCACTCACC+AGG 0.552576 4:-56252424 MsG0480021281.01.T01:three_prime_UTR
ACAGTTAAGGACGATAGGAC+GGG 0.557878 4:-56254989 MsG0480021281.01.T01:CDS
ACCTGCGCAAACATGTGGCA+GGG 0.561899 4:+56253719 None:intergenic
AGAGAGGCTCTTCATGCACC+TGG 0.563412 4:-56255335 MsG0480021281.01.T01:CDS
AAGTGCCATTAATTTAAGAT+CGG 0.565500 4:+56253745 None:intergenic
GTTGAAGAAATCATCTCTGA+AGG 0.565648 4:-56255013 MsG0480021281.01.T01:CDS
AATACAGAGAAATCAATTCG+AGG 0.566352 4:+56255254 None:intergenic
GATTTGAAAGAAAGGGAAGA+GGG 0.569963 4:-56254025 MsG0480021281.01.T01:CDS
AAGGACGATAGGACGGGGAC+TGG 0.570181 4:-56254983 MsG0480021281.01.T01:CDS
TGATTTGAAAGAAAGGGAAG+AGG 0.575271 4:-56254026 MsG0480021281.01.T01:CDS
GGGTTGCAATTACAACTGCT+TGG 0.577827 4:+56255769 None:intergenic
CTTGGAACCCAATTTGGACA+AGG 0.579617 4:+56254958 None:intergenic
TCGAATGAGAACTTAAGGAA+AGG 0.584321 4:+56256654 None:intergenic
TGCAGACCTGCGCAAACATG+TGG 0.585135 4:+56253714 None:intergenic
CTGCGCAAACATGTGGCAGG+GGG 0.588068 4:+56253721 None:intergenic
CAACGGTGACATCTGATCCT+GGG 0.591260 4:-56255671 MsG0480021281.01.T01:CDS
TGTCATGGGTAGAAAATCAT+GGG 0.596867 4:-56255634 MsG0480021281.01.T01:CDS
ATTATCATAAAGAACTGGAT+CGG 0.604413 4:+56255124 None:intergenic
AGCTTTCCTGTTAACAACCA+AGG 0.605146 4:-56254843 MsG0480021281.01.T01:intron
AACTCAGAGCCGAATCCGCA+AGG 0.608434 4:-56255797 MsG0480021281.01.T01:CDS
GGATGAAATCACCTGGAACA+AGG 0.610015 4:+56252872 None:intergenic
GACGTATCATCCTCTCAGCA+TGG 0.612338 4:-56253775 MsG0480021281.01.T01:CDS
ATAACATGGATGAAATCACC+TGG 0.618623 4:+56252865 None:intergenic
AAGTGTAACAGCCTGAAGAA+GGG 0.621237 4:+56252522 None:intergenic
GAGAAAGTATTTCTTACAGG+AGG 0.621492 4:-56255450 MsG0480021281.01.T01:CDS
AAGGCACAGTTAAGGACGAT+AGG 0.622211 4:-56254994 MsG0480021281.01.T01:CDS
TGAGAGGTCTGTTCTCAGGA+GGG 0.625637 4:+56255604 None:intergenic
CATAAGTGTTAAAAGAATAG+CGG 0.642370 4:+56255189 None:intergenic
AGAATCATTAGCCATAGCAG+TGG 0.644265 4:+56255848 None:intergenic
GAGTTAGAATAATATTAAGA+CGG 0.645126 4:+56255577 None:intergenic
ATATTAAGACGGCCCCTGAG+AGG 0.645842 4:+56255588 None:intergenic
TGATCAGTAGGCAATGTCCA+GGG 0.646115 4:+56255714 None:intergenic
TATCAACGATCTGCAGACAT+GGG 0.648595 4:-56253563 MsG0480021281.01.T01:CDS
CGGATGGATTCCATGCTGAG+AGG 0.653160 4:+56253765 None:intergenic
AACATGCATGATGACTACTC+CGG 0.656860 4:-56253857 MsG0480021281.01.T01:CDS
GCAAAGGCTTCACATGATTG+CGG 0.657311 4:+56252824 None:intergenic
CAGTTAAGGACGATAGGACG+GGG 0.657786 4:-56254988 MsG0480021281.01.T01:CDS
CAATATTAAAGGGCACACCA+AGG 0.680253 4:+56253540 None:intergenic
TGCGCAAACATGTGGCAGGG+GGG 0.681399 4:+56253722 None:intergenic
AAAGGGAAAGACGTATACCA+TGG 0.681591 4:+56255227 None:intergenic
CATGGGTAGAAAATCATGGG+AGG 0.707303 4:-56255631 MsG0480021281.01.T01:CDS
CCTGAGAACAGACCTCTCAG+GGG 0.707726 4:-56255600 MsG0480021281.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATTATAGCTATTTTAA+TGG - Chr4:56256065-56256084 MsG0480021281.01.T01:intron 10.0%
!! TCAAAATATATTATATTGAC+AGG - Chr4:56254876-56254895 MsG0480021281.01.T01:intron 15.0%
!!! CTTAATTTTTTTTTTTGTGA+AGG + Chr4:56256353-56256372 None:intergenic 15.0%
!!! TTATTTTGAATTAGTTGAAA+TGG - Chr4:56256701-56256720 MsG0480021281.01.T01:five_prime_UTR 15.0%
!!! TTCTTTTAATTCTTCATTTT+TGG - Chr4:56252515-56252534 MsG0480021281.01.T01:three_prime_UTR 15.0%
!! AACTTGAAACTACAATTTAA+AGG + Chr4:56252999-56253018 None:intergenic 20.0%
!! AAGATTAAAAACTGGTTAAT+TGG - Chr4:56255749-56255768 MsG0480021281.01.T01:CDS 20.0%
!! ATGAAATGTGAAGAATAATA+AGG + Chr4:56252488-56252507 None:intergenic 20.0%
!! CAAAACAATAGAAAAAGAAA+AGG + Chr4:56254317-56254336 None:intergenic 20.0%
!! GAGTTAGAATAATATTAAGA+CGG + Chr4:56253495-56253514 None:intergenic 20.0%
!! GTAAAGAGATTTATATAATG+TGG - Chr4:56256620-56256639 MsG0480021281.01.T01:five_prime_UTR 20.0%
!! TATCTTCAATATCTGAATTT+AGG + Chr4:56256408-56256427 None:intergenic 20.0%
!! TCTCTTTACAATAATAATCA+TGG + Chr4:56256609-56256628 None:intergenic 20.0%
!! TTTGAATTATCATAAAGAAC+TGG + Chr4:56253953-56253972 None:intergenic 20.0%
!!! ATTTGTTTTGACATTGTAAT+TGG + Chr4:56256047-56256066 None:intergenic 20.0%
!!! ATTTTGTAAAAAAGTTGACA+TGG - Chr4:56254402-56254421 MsG0480021281.01.T01:intron 20.0%
!!! CTTTTATATTTGAGGAAAAT+TGG - Chr4:56256124-56256143 MsG0480021281.01.T01:intron 20.0%
!!! GAACATATCTTTTATATTTG+AGG - Chr4:56256116-56256135 MsG0480021281.01.T01:intron 20.0%
!!! TGATTTAATACTATTTTGCT+AGG - Chr4:56253190-56253209 MsG0480021281.01.T01:intron 20.0%
!!! TTTTAATATAGGTAAACTTG+TGG - Chr4:56254662-56254681 MsG0480021281.01.T01:intron 20.0%
!!! TTTTTCATTCAGTTATTAAC+TGG - Chr4:56254997-56255016 MsG0480021281.01.T01:CDS 20.0%
! AAATGTGAAGAATAATAAGG+TGG + Chr4:56252485-56252504 None:intergenic 25.0%
! AACAAGAAAAGACAATTAAC+GGG + Chr4:56256380-56256399 None:intergenic 25.0%
! ACAAAACAAACACAAATTGA+CGG + Chr4:56255959-56255978 None:intergenic 25.0%
! ACCTTAATACTAACATATCT+GGG - Chr4:56255646-56255665 MsG0480021281.01.T01:CDS 25.0%
! ATAAAAGATATGTTCCTCTA+AGG + Chr4:56256111-56256130 None:intergenic 25.0%
! ATTATCATAAAGAACTGGAT+CGG + Chr4:56253948-56253967 None:intergenic 25.0%
! CAACAAGAAAAGACAATTAA+CGG + Chr4:56256381-56256400 None:intergenic 25.0%
! CATAAGTGTTAAAAGAATAG+CGG + Chr4:56253883-56253902 None:intergenic 25.0%
! CTTGAGTTATCAATATAGTT+TGG - Chr4:56254685-56254704 MsG0480021281.01.T01:intron 25.0%
! GAAATTTGTATAATCTACTG+TGG - Chr4:56254267-56254286 MsG0480021281.01.T01:intron 25.0%
! GCATAAGATGCAATATTAAA+GGG + Chr4:56255542-56255561 None:intergenic 25.0%
! GGAAAATTATATCATTACCT+TGG + Chr4:56254509-56254528 None:intergenic 25.0%
! GTTAAGTTAATTGAAGTGAT+GGG - Chr4:56255817-56255836 MsG0480021281.01.T01:CDS 25.0%
! TAATATTATTCTAACTCGCT+CGG - Chr4:56253498-56253517 MsG0480021281.01.T01:CDS 25.0%
! TCAGAAGATAGAAATGAAAA+TGG - Chr4:56256496-56256515 MsG0480021281.01.T01:intron 25.0%
! TGTTAAGTTAATTGAAGTGA+TGG - Chr4:56255816-56255835 MsG0480021281.01.T01:CDS 25.0%
! TTCAATTTCGGTAATATGAA+TGG + Chr4:56253768-56253787 None:intergenic 25.0%
! TTTGAATTAGTTGAAATGGT+TGG - Chr4:56256705-56256724 MsG0480021281.01.T01:five_prime_UTR 25.0%
!! AAGTGCCATTAATTTAAGAT+CGG + Chr4:56255327-56255346 None:intergenic 25.0%
!! ATCATTACACTGTATTTTGT+GGG - Chr4:56255144-56255163 MsG0480021281.01.T01:CDS 25.0%
!! ATTCAAATGCTCTAAATTTG+AGG - Chr4:56253966-56253985 MsG0480021281.01.T01:intron 25.0%
!! CTACAATTTAAAGGTTTGTT+TGG + Chr4:56252990-56253009 None:intergenic 25.0%
!! GATGATTTTTATATACAGAG+AGG - Chr4:56253718-56253737 MsG0480021281.01.T01:intron 25.0%
!! TCAAAAAACTTTTGATCAGT+AGG + Chr4:56253370-56253389 None:intergenic 25.0%
!!! ATTGAGAAAGTATTTCTTAC+AGG - Chr4:56253616-56253635 MsG0480021281.01.T01:intron 25.0%
!!! TACTGATCAAAAGTTTTTTG+AGG - Chr4:56253369-56253388 MsG0480021281.01.T01:intron 25.0%
!!! TATAGCTATTTTAATGGAGT+TGG - Chr4:56256071-56256090 MsG0480021281.01.T01:intron 25.0%
!!! TTGAGCTTAGGTTTTAATAT+AGG - Chr4:56254651-56254670 MsG0480021281.01.T01:intron 25.0%
!!! TTGATTTGTAGAGAGTATTT+TGG - Chr4:56254434-56254453 MsG0480021281.01.T01:intron 25.0%
AAAAAGGACATTATACTGGT+TGG + Chr4:56256168-56256187 None:intergenic 30.0%
AAACATGCACAGCATTTATT+TGG + Chr4:56253133-56253152 None:intergenic 30.0%
AAACCAATCAAATGTTACCT+TGG + Chr4:56254132-56254151 None:intergenic 30.0%
AACCAAAATTACACATACCT+TGG + Chr4:56254246-56254265 None:intergenic 30.0%
AATACAGAGAAATCAATTCG+AGG + Chr4:56253818-56253837 None:intergenic 30.0%
AATATTATTCTAACTCGCTC+GGG - Chr4:56253499-56253518 MsG0480021281.01.T01:CDS 30.0%
ACCCAGATATGTTAGTATTA+AGG + Chr4:56255650-56255669 None:intergenic 30.0%
ACTTCAAGTAGAATCAATGT+TGG - Chr4:56252789-56252808 MsG0480021281.01.T01:CDS 30.0%
AGAAATGAAAATGGCTGTTT+AGG - Chr4:56256505-56256524 MsG0480021281.01.T01:intron 30.0%
AGACAAAAGATTTGTGTGTT+TGG - Chr4:56252587-56252606 MsG0480021281.01.T01:CDS 30.0%
ATGCCTCTCAAAAATATCTT+AGG + Chr4:56254012-56254031 None:intergenic 30.0%
ATTTCTCTGTATTTCATCCA+TGG - Chr4:56253825-56253844 MsG0480021281.01.T01:CDS 30.0%
CAAAACAAACACAAATTGAC+GGG + Chr4:56255958-56255977 None:intergenic 30.0%
CAAGAAAAAGGACATTATAC+TGG + Chr4:56256172-56256191 None:intergenic 30.0%
CACCTTAATACTAACATATC+TGG - Chr4:56255645-56255664 MsG0480021281.01.T01:CDS 30.0%
CGCATAAGATGCAATATTAA+AGG + Chr4:56255543-56255562 None:intergenic 30.0%
CTGTTACACTTTCTTAAACA+AGG - Chr4:56256559-56256578 MsG0480021281.01.T01:intron 30.0%
GAAACTGAAAGTGAAAAAAG+TGG + Chr4:56252335-56252354 None:intergenic 30.0%
GAATCAATGTCTTTCTTCTT+TGG + Chr4:56256434-56256453 None:intergenic 30.0%
GCAGATAATGTTCTTATATG+TGG - Chr4:56253541-56253560 MsG0480021281.01.T01:CDS 30.0%
GTGATTTCATCCATGTTATT+GGG - Chr4:56256208-56256227 MsG0480021281.01.T01:intron 30.0%
TAGAACTGCATAACAAAAAG+AGG + Chr4:56255455-56255474 None:intergenic 30.0%
TCAAGTTAGAATCAATTCTG+AGG - Chr4:56253012-56253031 MsG0480021281.01.T01:intron 30.0%
TCCATCCGATCTTAAATTAA+TGG - Chr4:56255319-56255338 MsG0480021281.01.T01:CDS 30.0%
TGATTTCATCCATGTTATTG+GGG - Chr4:56256209-56256228 MsG0480021281.01.T01:intron 30.0%
TTATTTGAACAGTTGAGCTT+AGG - Chr4:56254639-56254658 MsG0480021281.01.T01:intron 30.0%
TTCATTTCTATCTTCTGATG+AGG + Chr4:56256494-56256513 None:intergenic 30.0%
TTGAGCAGAAGATTAAAAAC+TGG - Chr4:56255741-56255760 MsG0480021281.01.T01:CDS 30.0%
TTTAGAAACTACAACGTTGT+TGG - Chr4:56255989-56256008 MsG0480021281.01.T01:intron 30.0%
! AACCAAGGTATGTGTAATTT+TGG - Chr4:56254241-56254260 MsG0480021281.01.T01:intron 30.0%
! AAGCATATGCATAGGTTTTA+TGG + Chr4:56254750-56254769 None:intergenic 30.0%
! ATGAGTTTTTCACTTTCAGT+TGG - Chr4:56256018-56256037 MsG0480021281.01.T01:intron 30.0%
! CATCATTACACTGTATTTTG+TGG - Chr4:56255143-56255162 MsG0480021281.01.T01:CDS 30.0%
! TTTGATGGACAATATGTACT+TGG - Chr4:56255612-56255631 MsG0480021281.01.T01:CDS 30.0%
!! AACATTTGATTGGTTTGTTG+TGG - Chr4:56254136-56254155 MsG0480021281.01.T01:intron 30.0%
!! AATTTTAGCACATCCAAAAG+TGG + Chr4:56252615-56252634 None:intergenic 30.0%
!! ACAGCATTGATTTGAAAGAA+AGG - Chr4:56255036-56255055 MsG0480021281.01.T01:intron 30.0%
!! AGGAAAAAGGCATTCATATA+TGG - Chr4:56254905-56254924 MsG0480021281.01.T01:intron 30.0%
!! CAGCATTGATTTGAAAGAAA+GGG - Chr4:56255037-56255056 MsG0480021281.01.T01:intron 30.0%
!! CTTCCTAAGATATTTTTGAG+AGG - Chr4:56254006-56254025 MsG0480021281.01.T01:CDS 30.0%
!! GGAAAAAGGCATTCATATAT+GGG - Chr4:56254906-56254925 MsG0480021281.01.T01:intron 30.0%
!! TATTTGGTGTATCTCATATG+CGG + Chr4:56253117-56253136 None:intergenic 30.0%
!! TCTGGGTTTTATAGAGTTAT+AGG - Chr4:56255663-56255682 MsG0480021281.01.T01:CDS 30.0%
!! TTTTAAAAATCCCACCTTAG+AGG - Chr4:56256094-56256113 MsG0480021281.01.T01:intron 30.0%
!! TTTTGTTATGCAGTTCTATG+TGG - Chr4:56255457-56255476 MsG0480021281.01.T01:CDS 30.0%
!!! ATTTTTGGTGCTCATTTTCA+TGG - Chr4:56252530-56252549 MsG0480021281.01.T01:three_prime_UTR 30.0%
!!! CACAAGTGATGTTTTTAGTT+AGG - Chr4:56254551-56254570 MsG0480021281.01.T01:intron 30.0%
!!! GAAAGACATTGATTCTTTTG+TGG - Chr4:56256439-56256458 MsG0480021281.01.T01:intron 30.0%
!!! GTTTTTTGAGGATATCACAA+CGG - Chr4:56253381-56253400 MsG0480021281.01.T01:intron 30.0%
!!! TAAAGGTTTGTTTGGTTTTG+CGG + Chr4:56252982-56253001 None:intergenic 30.0%
AACAAGGTCTGACAAGAAAA+AGG + Chr4:56256184-56256203 None:intergenic 35.0%
AAGTTCTCATTCGAAATCGT+TGG - Chr4:56252424-56252443 MsG0480021281.01.T01:three_prime_UTR 35.0%
ACATATTGTCCATCAAAAGC+TGG + Chr4:56255609-56255628 None:intergenic 35.0%
ATAACATGGATGAAATCACC+TGG + Chr4:56256207-56256226 None:intergenic 35.0%
ATAATCATGCTTGCCTATCA+AGG + Chr4:56254954-56254973 None:intergenic 35.0%
ATGTTTGATTCCACTTCTAG+AGG + Chr4:56252868-56252887 None:intergenic 35.0%
CATCAAAGCAAATGATATCC+AGG + Chr4:56256324-56256343 None:intergenic 35.0%
CATCTGTGGAATTATAGAGT+AGG + Chr4:56254188-56254207 None:intergenic 35.0%
CGATTTCGAATGAGAACTTA+AGG + Chr4:56252423-56252442 None:intergenic 35.0%
CTCAATGCTTGCTTCAATTT+CGG + Chr4:56253780-56253799 None:intergenic 35.0%
GATTCTTCTGTAATCGTCAA+TGG - Chr4:56253238-56253257 MsG0480021281.01.T01:intron 35.0%
GATTTGAAAGAAAGGGAAGA+GGG - Chr4:56255044-56255063 MsG0480021281.01.T01:intron 35.0%
GGTGATTTCATCCATGTTAT+TGG - Chr4:56256207-56256226 MsG0480021281.01.T01:intron 35.0%
GTAATGATGAACACAGACAA+AGG + Chr4:56255132-56255151 None:intergenic 35.0%
GTTCCAAGGTAACATTTGAT+TGG - Chr4:56254126-56254145 MsG0480021281.01.T01:intron 35.0%
GTTGAAGAAATCATCTCTGA+AGG - Chr4:56254056-56254075 MsG0480021281.01.T01:CDS 35.0%
TACATGATTGCTCATGTTTG+TGG - Chr4:56255572-56255591 MsG0480021281.01.T01:CDS 35.0%
TCAAAATTTGAGTAGTTGCC+TGG - Chr4:56256747-56256766 MsG0480021281.01.T01:five_prime_UTR 35.0%
TCAAGTAGAATCAATGTTGG+AGG - Chr4:56252792-56252811 MsG0480021281.01.T01:CDS 35.0%
TCGAATGAGAACTTAAGGAA+AGG + Chr4:56252418-56252437 None:intergenic 35.0%
TGATTTGAAAGAAAGGGAAG+AGG - Chr4:56255043-56255062 MsG0480021281.01.T01:intron 35.0%
TGTCATGGGTAGAAAATCAT+GGG - Chr4:56253435-56253454 MsG0480021281.01.T01:intron 35.0%
TGTGAAGAATAATAAGGTGG+CGG + Chr4:56252482-56252501 None:intergenic 35.0%
TTAACACTTATGTGCGTGTA+AGG - Chr4:56253891-56253910 MsG0480021281.01.T01:intron 35.0%
TTCTCAATTGACTGACAGTA+AGG + Chr4:56253604-56253623 None:intergenic 35.0%
TTCTGTAATCGTCAATGGAA+TGG - Chr4:56253243-56253262 MsG0480021281.01.T01:intron 35.0%
TTGTCATGGGTAGAAAATCA+TGG - Chr4:56253434-56253453 MsG0480021281.01.T01:intron 35.0%
TTTGCTAATGGCATAATGCA+TGG - Chr4:56253150-56253169 MsG0480021281.01.T01:intron 35.0%
! AAACCTACCAAAACCTTTTC+CGG - Chr4:56256284-56256303 MsG0480021281.01.T01:intron 35.0%
! AAAGATATGTTCCTCTAAGG+TGG + Chr4:56256108-56256127 None:intergenic 35.0%
! AAGTTAATTGAAGTGATGGG+TGG - Chr4:56255820-56255839 MsG0480021281.01.T01:CDS 35.0%
! CACAAATTGACGGGTAATTT+CGG + Chr4:56255949-56255968 None:intergenic 35.0%
! GCCATTAATTTAAGATCGGA+TGG + Chr4:56255323-56255342 None:intergenic 35.0%
! TACACTGTATTTTGTGGGAT+TGG - Chr4:56255149-56255168 MsG0480021281.01.T01:CDS 35.0%
! TGATTTTCTACCCATGACAA+CGG + Chr4:56253434-56253453 None:intergenic 35.0%
! TGCAATGCAGTATTGAACTT+TGG + Chr4:56254778-56254797 None:intergenic 35.0%
!! AAAGGCATTCATATATGGGA+TGG - Chr4:56254910-56254929 MsG0480021281.01.T01:intron 35.0%
!! AAGATATGTTCCTCTAAGGT+GGG + Chr4:56256107-56256126 None:intergenic 35.0%
!! CAGTTGTTTGTTGCTTTCTT+CGG - Chr4:56254712-56254731 MsG0480021281.01.T01:intron 35.0%
!! GAAAAGGTTTTGGTAGGTTT+TGG + Chr4:56256284-56256303 None:intergenic 35.0%
!! GAGAAAGTATTTCTTACAGG+AGG - Chr4:56253619-56253638 MsG0480021281.01.T01:intron 35.0%
!! TCATCTGATTAGTCTATGCT+TGG + Chr4:56253085-56253104 None:intergenic 35.0%
!! TTAGGAATCTCTGAGATTCT+CGG - Chr4:56256523-56256542 MsG0480021281.01.T01:intron 35.0%
AAAGGGAAAGACGTATACCA+TGG + Chr4:56253845-56253864 None:intergenic 40.0%
AAAGTGTAACAGCCTGAAGA+AGG + Chr4:56256551-56256570 None:intergenic 40.0%
AACATGCATGATGACTACTC+CGG - Chr4:56255212-56255231 MsG0480021281.01.T01:CDS 40.0%
AAGAAGAATGCCGTTGTCAT+GGG - Chr4:56253421-56253440 MsG0480021281.01.T01:intron 40.0%
AAGTGTAACAGCCTGAAGAA+GGG + Chr4:56256550-56256569 None:intergenic 40.0%
ACATTCACACATACCGGAAA+AGG + Chr4:56256300-56256319 None:intergenic 40.0%
ACTGGTACCTTGTCCAAATT+GGG - Chr4:56254104-56254123 MsG0480021281.01.T01:intron 40.0%
AGAATCATTAGCCATAGCAG+TGG + Chr4:56253224-56253243 None:intergenic 40.0%
AGCTTTCCTGTTAACAACCA+AGG - Chr4:56254226-56254245 MsG0480021281.01.T01:intron 40.0%
ATATGAATGGCTTCACATCC+AGG + Chr4:56253755-56253774 None:intergenic 40.0%
ATCTTCTGCTATGGAACTGT+TGG - Chr4:56253570-56253589 MsG0480021281.01.T01:CDS 40.0%
ATGCAGTTCTATGTGGCAAA+TGG - Chr4:56255464-56255483 MsG0480021281.01.T01:CDS 40.0%
ATGGTATACGTCTTTCCCTT+TGG - Chr4:56253844-56253863 MsG0480021281.01.T01:CDS 40.0%
CACATACCTTGGTTGTTAAC+AGG + Chr4:56254235-56254254 None:intergenic 40.0%
CCTTAGCAATACCCATATCT+CGG + Chr4:56253324-56253343 None:intergenic 40.0%
CGCAGATTAAATCTCATCTG+TGG + Chr4:56254202-56254221 None:intergenic 40.0%
CTAACAGCTGATCAAATCCT+TGG + Chr4:56255238-56255257 None:intergenic 40.0%
CTAAGGATGGAAAATTACCC+TGG - Chr4:56253338-56253357 MsG0480021281.01.T01:intron 40.0%
CTGTGGAATTATAGAGTAGG+AGG + Chr4:56254185-56254204 None:intergenic 40.0%
CTTAGCAATACCCATATCTC+GGG + Chr4:56253323-56253342 None:intergenic 40.0%
GTAATTGCAACCCGAGATAT+GGG - Chr4:56253310-56253329 MsG0480021281.01.T01:intron 40.0%
GTGACTTAGGACCTGTTTAT+GGG - Chr4:56255066-56255085 MsG0480021281.01.T01:intron 40.0%
GTTACAATTCACACACTAGC+TGG - Chr4:56254573-56254592 MsG0480021281.01.T01:intron 40.0%
GTTCAATACTGCATTGCATG+AGG - Chr4:56254780-56254799 MsG0480021281.01.T01:intron 40.0%
TATCAACGATCTGCAGACAT+GGG - Chr4:56255506-56255525 MsG0480021281.01.T01:CDS 40.0%
TCTTTCCCTTTGGTGGAAAA+TGG - Chr4:56253854-56253873 MsG0480021281.01.T01:CDS 40.0%
TGTAATTGCAACCCGAGATA+TGG - Chr4:56253309-56253328 MsG0480021281.01.T01:intron 40.0%
TGTTACCTTGGAACCCAATT+TGG + Chr4:56254120-56254139 None:intergenic 40.0%
TTCTCATTCGAAATCGTTGG+AGG - Chr4:56252427-56252446 MsG0480021281.01.T01:three_prime_UTR 40.0%
! AATATTCGCTCCTCTAGAAG+TGG - Chr4:56252855-56252874 MsG0480021281.01.T01:CDS 40.0%
! ACACATACCGGAAAAGGTTT+TGG + Chr4:56256294-56256313 None:intergenic 40.0%
! ATGCTGTGCATGTTTGCTAA+TGG - Chr4:56253138-56253157 MsG0480021281.01.T01:intron 40.0%
! ATTATATTGACAGGTGCTGC+AGG - Chr4:56254885-56254904 MsG0480021281.01.T01:intron 40.0%
! CAATATTAAAGGGCACACCA+AGG + Chr4:56255532-56255551 None:intergenic 40.0%
! GAGCTTCTTTGGTTTATCAG+TGG - Chr4:56254472-56254491 MsG0480021281.01.T01:intron 40.0%
! GATATGGGTATTGCTAAGGA+TGG - Chr4:56253325-56253344 MsG0480021281.01.T01:intron 40.0%
! TGGTAGTGTATCTTCTGCTA+TGG - Chr4:56253561-56253580 MsG0480021281.01.T01:CDS 40.0%
! TGGTCAAGAAGCATATGCAT+AGG + Chr4:56254758-56254777 None:intergenic 40.0%
! TTGCATGAGGTGTTTCTTCT+AGG - Chr4:56254793-56254812 MsG0480021281.01.T01:intron 40.0%
! TTTGTGATTTTCCAACAGCC+TGG + Chr4:56256666-56256685 None:intergenic 40.0%
!! AAGGTTTTGGTAGGTTTTGG+AGG + Chr4:56256281-56256300 None:intergenic 40.0%
!! ATACCGGAAAAGGTTTTGGT+AGG + Chr4:56256290-56256309 None:intergenic 40.0%
!!! TTGTAGAGAGTATTTTGGCG+AGG - Chr4:56254439-56254458 MsG0480021281.01.T01:intron 40.0%
AACACCACATGCCAGTTGTA+GGG + Chr4:56255899-56255918 None:intergenic 45.0%
AACTGCTTGGTAAGTCCTTG+CGG + Chr4:56253290-56253309 None:intergenic 45.0%
AAGGCACAGTTAAGGACGAT+AGG - Chr4:56254075-56254094 MsG0480021281.01.T01:intron 45.0%
ACAGTTAAGGACGATAGGAC+GGG - Chr4:56254080-56254099 MsG0480021281.01.T01:intron 45.0%
ACCTCAAGTTCCCCAACATT+TGG + Chr4:56254605-56254624 None:intergenic 45.0%
AGCTTCTGCGCAACATTCTT+AGG - Chr4:56252450-56252469 MsG0480021281.01.T01:three_prime_UTR 45.0%
AGCTTTCTTTCCCCTACAAC+TGG - Chr4:56255885-56255904 MsG0480021281.01.T01:intron 45.0%
AGGATGATACGTCGATCATC+AGG + Chr4:56255287-56255306 None:intergenic 45.0%
AGGTTCAGATTCCACTGCTA+TGG - Chr4:56253210-56253229 MsG0480021281.01.T01:intron 45.0%
CAATCATGTGAAGCCTTTGC+AGG - Chr4:56256248-56256267 MsG0480021281.01.T01:intron 45.0%
CACAGTTAAGGACGATAGGA+CGG - Chr4:56254079-56254098 MsG0480021281.01.T01:intron 45.0%
CATCCAGGGAATACCTTGAT+AGG - Chr4:56254938-56254957 MsG0480021281.01.T01:intron 45.0%
CATGGGTAGAAAATCATGGG+AGG - Chr4:56253438-56253457 MsG0480021281.01.T01:intron 45.0%
CATGTGCATCCCCAATAACA+TGG + Chr4:56256221-56256240 None:intergenic 45.0%
CTCCACTGAAACCCATAAAC+AGG + Chr4:56255080-56255099 None:intergenic 45.0%
CTGTTTATGGGTTTCAGTGG+AGG - Chr4:56255078-56255097 MsG0480021281.01.T01:intron 45.0%
CTTACTGTCTCGCATTCTGT+AGG - Chr4:56255183-56255202 MsG0480021281.01.T01:CDS 45.0%
CTTGGAACCCAATTTGGACA+AGG + Chr4:56254114-56254133 None:intergenic 45.0%
CTTGTCCAAATTGGGTTCCA+AGG - Chr4:56254112-56254131 MsG0480021281.01.T01:intron 45.0%
GAAGAAGAATGCCGTTGTCA+TGG - Chr4:56253420-56253439 MsG0480021281.01.T01:intron 45.0%
GACCTGTTTATGGGTTTCAG+TGG - Chr4:56255075-56255094 MsG0480021281.01.T01:intron 45.0%
GACTGGTACCTTGTCCAAAT+TGG - Chr4:56254103-56254122 MsG0480021281.01.T01:intron 45.0%
GCAAAGGCTTCACATGATTG+CGG + Chr4:56256248-56256267 None:intergenic 45.0%
GCGTTGTTGAAGAGCTTCTT+TGG - Chr4:56254461-56254480 MsG0480021281.01.T01:intron 45.0%
GGATGAAATCACCTGGAACA+AGG + Chr4:56256200-56256219 None:intergenic 45.0%
GGGTTGCAATTACAACTGCT+TGG + Chr4:56253303-56253322 None:intergenic 45.0%
GGTGACTTAGGACCTGTTTA+TGG - Chr4:56255065-56255084 MsG0480021281.01.T01:intron 45.0%
GTATACGTCTTTCCCTTTGG+TGG - Chr4:56253847-56253866 MsG0480021281.01.T01:CDS 45.0%
GTATCAACGATCTGCAGACA+TGG - Chr4:56255505-56255524 MsG0480021281.01.T01:CDS 45.0%
TAACACCACATGCCAGTTGT+AGG + Chr4:56255900-56255919 None:intergenic 45.0%
TCCAATCTTTCTACGCACGT+GGG - Chr4:56254526-56254545 MsG0480021281.01.T01:intron 45.0%
TGATCAGTAGGCAATGTCCA+GGG + Chr4:56253358-56253377 None:intergenic 45.0%
TTCCAATCTTTCTACGCACG+TGG - Chr4:56254525-56254544 MsG0480021281.01.T01:intron 45.0%
TTCTTGTCAGACCTTGTTCC+AGG - Chr4:56256186-56256205 MsG0480021281.01.T01:intron 45.0%
TTGATCAGTAGGCAATGTCC+AGG + Chr4:56253359-56253378 None:intergenic 45.0%
TTGGTAAGTCCTTGCGGATT+CGG + Chr4:56253284-56253303 None:intergenic 45.0%
! CATCTCTGAAGGCACAGTTA+AGG - Chr4:56254067-56254086 MsG0480021281.01.T01:intron 45.0%
! CCGAGATATGGGTATTGCTA+AGG - Chr4:56253321-56253340 MsG0480021281.01.T01:intron 45.0%
! CGCAAATTGCCAGCTTTTGA+TGG - Chr4:56255597-56255616 MsG0480021281.01.T01:CDS 45.0%
! TTGCCTATCAAGGTATTCCC+TGG + Chr4:56254944-56254963 None:intergenic 45.0%
!! CAGGAGGTGCTGAGATATTT+AGG - Chr4:56253635-56253654 MsG0480021281.01.T01:intron 45.0%
!! GCTGCTGATTTCAAGCTCAT+AGG - Chr4:56256461-56256480 MsG0480021281.01.T01:intron 45.0%
!!! GGATGCCATTTTCCACCAAA+GGG + Chr4:56253862-56253881 None:intergenic 45.0%
!! ATGTAAAAAAAAAATTAAAT+AGG - Chr4:56255778-56255797 MsG0480021281.01.T01:CDS 5.0%
ACAACGGCATTCTTCTTCCC+AGG + Chr4:56253418-56253437 None:intergenic 50.0%
ACAACGGTGACATCTGATCC+TGG - Chr4:56253397-56253416 MsG0480021281.01.T01:intron 50.0%
ACACCACATGCCAGTTGTAG+GGG + Chr4:56255898-56255917 None:intergenic 50.0%
AGATTCTCGGTCCCTTCTTC+AGG - Chr4:56256536-56256555 MsG0480021281.01.T01:intron 50.0%
AGCTGGCATGAGCCAAATGT+TGG - Chr4:56254590-56254609 MsG0480021281.01.T01:intron 50.0%
ATATTAAGACGGCCCCTGAG+AGG + Chr4:56253484-56253503 None:intergenic 50.0%
ATGGGATGGCAATGCATCCA+GGG - Chr4:56254924-56254943 MsG0480021281.01.T01:intron 50.0%
CAACGGTGACATCTGATCCT+GGG - Chr4:56253398-56253417 MsG0480021281.01.T01:intron 50.0%
CAGCTGATCAAATCCTTGGC+CGG + Chr4:56255234-56255253 None:intergenic 50.0%
CAGTTAAGGACGATAGGACG+GGG - Chr4:56254081-56254100 MsG0480021281.01.T01:intron 50.0%
CGCAGGTCTGCAGCTATATT+TGG - Chr4:56255366-56255385 MsG0480021281.01.T01:intron 50.0%
CTGGCATGAGCCAAATGTTG+GGG - Chr4:56254592-56254611 MsG0480021281.01.T01:intron 50.0%
GAAAGGGAAGAGGGTGACTT+AGG - Chr4:56255053-56255072 MsG0480021281.01.T01:intron 50.0%
GACGTATCATCCTCTCAGCA+TGG - Chr4:56255294-56255313 MsG0480021281.01.T01:CDS 50.0%
GCCAAATGTTGGGGAACTTG+AGG - Chr4:56254601-56254620 MsG0480021281.01.T01:intron 50.0%
GCTGGCATGAGCCAAATGTT+GGG - Chr4:56254591-56254610 MsG0480021281.01.T01:intron 50.0%
TATGGGATGGCAATGCATCC+AGG - Chr4:56254923-56254942 MsG0480021281.01.T01:intron 50.0%
TCCTGAGAACAGACCTCTCA+GGG - Chr4:56253468-56253487 MsG0480021281.01.T01:intron 50.0%
TGAGAGGTCTGTTCTCAGGA+GGG + Chr4:56253468-56253487 None:intergenic 50.0%
TTTCCCCTACAACTGGCATG+TGG - Chr4:56255892-56255911 MsG0480021281.01.T01:intron 50.0%
! TGACAGGTGCTGCAGGAAAA+AGG - Chr4:56254892-56254911 MsG0480021281.01.T01:intron 50.0%
! TTTTCCAACAGCCTGGTGAG+TGG + Chr4:56256659-56256678 None:intergenic 50.0%
!! GGGTTTCAGTGGAGGCATTT+GGG - Chr4:56255086-56255105 MsG0480021281.01.T01:intron 50.0%
!! TGGGTTTCAGTGGAGGCATT+TGG - Chr4:56255085-56255104 MsG0480021281.01.T01:intron 50.0%
!! TGTGTGTTTGGCGCCACTTT+TGG - Chr4:56252599-56252618 MsG0480021281.01.T01:CDS 50.0%
!!! CGGATGCCATTTTCCACCAA+AGG + Chr4:56253863-56253882 None:intergenic 50.0%
AACTCAGAGCCGAATCCGCA+AGG - Chr4:56253272-56253291 MsG0480021281.01.T01:intron 55.0%
ACCTGCGCAAACATGTGGCA+GGG + Chr4:56255353-56255372 None:intergenic 55.0%
AGAGAGGCTCTTCATGCACC+TGG - Chr4:56253734-56253753 MsG0480021281.01.T01:CDS 55.0%
CAGTGGCTCAACAAGTGCCA+AGG - Chr4:56254489-56254508 MsG0480021281.01.T01:intron 55.0%
CATGATGACTACTCCGGCCA+AGG - Chr4:56255218-56255237 MsG0480021281.01.T01:CDS 55.0%
CCTGAGAACAGACCTCTCAG+GGG - Chr4:56253469-56253488 MsG0480021281.01.T01:intron 55.0%
CTCCTGAGAACAGACCTCTC+AGG - Chr4:56253467-56253486 MsG0480021281.01.T01:intron 55.0%
CTGAGAGGTCTGTTCTCAGG+AGG + Chr4:56253469-56253488 None:intergenic 55.0%
GAGACTTGTCACCACTCACC+AGG - Chr4:56256645-56256664 MsG0480021281.01.T01:five_prime_UTR 55.0%
GCATTTGGGTGCAAGGTAGG+TGG - Chr4:56255100-56255119 MsG0480021281.01.T01:intron 55.0%
GCCCACGTGCGTAGAAAGAT+TGG + Chr4:56254530-56254549 None:intergenic 55.0%
TGCAGACCTGCGCAAACATG+TGG + Chr4:56255358-56255377 None:intergenic 55.0%
TGGAGGAGCTGTTCCTGCAA+AGG + Chr4:56256264-56256283 None:intergenic 55.0%
! CGGATGGATTCCATGCTGAG+AGG + Chr4:56255307-56255326 None:intergenic 55.0%
! GAGGCATTTGGGTGCAAGGT+AGG - Chr4:56255097-56255116 MsG0480021281.01.T01:intron 55.0%
!! AGTGGAGGCATTTGGGTGCA+AGG - Chr4:56255093-56255112 MsG0480021281.01.T01:intron 55.0%
AAGGACGATAGGACGGGGAC+TGG - Chr4:56254086-56254105 MsG0480021281.01.T01:intron 60.0%
CCCCTGAGAGGTCTGTTCTC+AGG + Chr4:56253472-56253491 None:intergenic 60.0%
CCTGCGCAAACATGTGGCAG+GGG + Chr4:56255352-56255371 None:intergenic 60.0%
CGATCTGCAGACATGGGCCT+TGG - Chr4:56255512-56255531 MsG0480021281.01.T01:CDS 60.0%
CTGCGCAAACATGTGGCAGG+GGG + Chr4:56255351-56255370 None:intergenic 60.0%
GACCTGCGCAAACATGTGGC+AGG + Chr4:56255354-56255373 None:intergenic 60.0%
GTCACCACTCACCAGGCTGT+TGG - Chr4:56256652-56256671 MsG0480021281.01.T01:five_prime_UTR 60.0%
TGCGCAAACATGTGGCAGGG+GGG + Chr4:56255350-56255369 None:intergenic 60.0%
CCCCTGCCACATGTTTGCGC+AGG - Chr4:56255349-56255368 MsG0480021281.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 56252324 56256767 56252324 ID=MsG0480021281.01;Name=MsG0480021281.01
Chr4 mRNA 56252324 56256767 56252324 ID=MsG0480021281.01.T01;Parent=MsG0480021281.01;Name=MsG0480021281.01.T01;_AED=0.32;_eAED=0.32;_QI=159|0.77|0.7|1|0.88|0.8|10|241|473
Chr4 exon 56252324 56252675 56252324 ID=MsG0480021281.01.T01:exon:6908;Parent=MsG0480021281.01.T01
Chr4 exon 56252786 56252895 56252786 ID=MsG0480021281.01.T01:exon:6907;Parent=MsG0480021281.01.T01
Chr4 exon 56253498 56253621 56253498 ID=MsG0480021281.01.T01:exon:6906;Parent=MsG0480021281.01.T01
Chr4 exon 56253721 56253886 56253721 ID=MsG0480021281.01.T01:exon:6905;Parent=MsG0480021281.01.T01
Chr4 exon 56253977 56254082 56253977 ID=MsG0480021281.01.T01:exon:6904;Parent=MsG0480021281.01.T01
Chr4 exon 56254844 56254886 56254844 ID=MsG0480021281.01.T01:exon:6903;Parent=MsG0480021281.01.T01
Chr4 exon 56254958 56255039 56254958 ID=MsG0480021281.01.T01:exon:6902;Parent=MsG0480021281.01.T01
Chr4 exon 56255104 56255355 56255104 ID=MsG0480021281.01.T01:exon:6901;Parent=MsG0480021281.01.T01
Chr4 exon 56255435 56255873 56255435 ID=MsG0480021281.01.T01:exon:6900;Parent=MsG0480021281.01.T01
Chr4 exon 56256620 56256767 56256620 ID=MsG0480021281.01.T01:exon:6899;Parent=MsG0480021281.01.T01
Chr4 five_prime_UTR 56256620 56256767 56256620 ID=MsG0480021281.01.T01:five_prime_utr;Parent=MsG0480021281.01.T01
Chr4 five_prime_UTR 56255863 56255873 56255863 ID=MsG0480021281.01.T01:five_prime_utr;Parent=MsG0480021281.01.T01
Chr4 CDS 56255435 56255862 56255435 ID=MsG0480021281.01.T01:cds;Parent=MsG0480021281.01.T01
Chr4 CDS 56255104 56255355 56255104 ID=MsG0480021281.01.T01:cds;Parent=MsG0480021281.01.T01
Chr4 CDS 56254958 56255039 56254958 ID=MsG0480021281.01.T01:cds;Parent=MsG0480021281.01.T01
Chr4 CDS 56254844 56254886 56254844 ID=MsG0480021281.01.T01:cds;Parent=MsG0480021281.01.T01
Chr4 CDS 56253977 56254082 56253977 ID=MsG0480021281.01.T01:cds;Parent=MsG0480021281.01.T01
Chr4 CDS 56253721 56253886 56253721 ID=MsG0480021281.01.T01:cds;Parent=MsG0480021281.01.T01
Chr4 CDS 56253498 56253621 56253498 ID=MsG0480021281.01.T01:cds;Parent=MsG0480021281.01.T01
Chr4 CDS 56252786 56252895 56252786 ID=MsG0480021281.01.T01:cds;Parent=MsG0480021281.01.T01
Chr4 CDS 56252565 56252675 56252565 ID=MsG0480021281.01.T01:cds;Parent=MsG0480021281.01.T01
Chr4 three_prime_UTR 56252324 56252564 56252324 ID=MsG0480021281.01.T01:three_prime_utr;Parent=MsG0480021281.01.T01
Gene Sequence

>MsG0480021281.01.T01

ATGGCTAATGATTCTTCTGTAATCGTCAATGGAATGGCAATGAAACTCAGAGCCGAATCCGCAAGGACTTACCAAGCAGTTGTAATTGCAACCCGAGATATGGGTATTGCTAAGGATGGAAAATTACCCTGGACATTGCCTACTGATCAAAAGTTTTTTGAGGATATCACAACGGTGACATCTGATCCTGGGAAGAAGAATGCCGTTGTCATGGGTAGAAAATCATGGGAGGCTATCCCTCCTGAGAACAGACCTCTCAGGGGCCGTCTTAATATTATTCTAACTCGCTCGGGTAGTTTTGAAATTGCAACTGCAGATAATGTTCTTATATGTGGTAGTGTATCTTCTGCTATGGAACTGTTGGCTTCTTCTCCTTACTGTCAGTCAATTGAGAAAGTATTTCTTACAGGAGGTGCTGAGATATTTAGAGAGGCTCTTCATGCACCTGGATGTGAAGCCATTCATATTACCGAAATTGAAGCAAGCATTGAGTGCGACACTTTTATGCCTCGAATTGATTTCTCTGTATTTCATCCATGGTATACGTCTTTCCCTTTGGTGGAAAATGGCATCCGCTATTCTTTTAACACTTATGTGCGTGTAAGGTCTTCAACAGAAGAATCTCAGAGTCTTATTACCGATCCAGTTCTTTATGATAATTCAAATGCTCTAAATTTGAGATTAGTTGAAGAAATCATCTCTGAAGGCACAGTTAAGGACGATAGGACGGGGACTGGTACCTTGTCCAAATTGGGTTCCAAGATGAGATTTAATCTGCGTAGAAGCTTTCCTGTTAACAACCAAGTTATTAACTGGATTTGCAATTTATTTTACAGCATTGATTTGAAAGAAAGGGAAGAGGGTGACTTAGGACCTGTTTATGGGTTTCAGTGGAGGCATTTGGGTGCAAGGTATACTAACATGCATGATGACTACTCCGGCCAAGGATTTGATCAGCTGTTAGATGTTATTAACAAGATAAAACACAATCCTGATGATCGACGTATCATCCTCTCAGCATGGAATCCATCCGATCTTAAATTAATGGCACTTCCCCCCTGCCACATGTTTGCGCAGTTCTATGTGGCAAATGGAGAGTTATCATGTCAAATGTATCAACGATCTGCAGACATGGGCCTTGGTGTGCCCTTTAATATTGCATCTTATGCGCTCTTGACATACATGATTGCTCATGTTTGTGACCTTGTTCCAGGTGATTTCATCCATGTTATTGGGGATGCACATGTTTACCGCAATCATGTGAAGCCTTTGCAGGAACAGCTCCTCCAAAACCTACCAAAACCTTTTCCGATATTGAAGATAAATCCAAAGAAGAAAGACATTGATTCTTTTGTGGCTGCTGATTTCAAGCTCATAGGCTATGATCCTCATCAGAAGATAGAAATGAAAATGGCTGTTTAG
Protein sequence

>MsG0480021281.01.T01

MANDSSVIVNGMAMKLRAESARTYQAVVIATRDMGIAKDGKLPWTLPTDQKFFEDITTVTSDPGKKNAVVMGRKSWEAIPPENRPLRGRLNIILTRSGSFEIATADNVLICGSVSSAMELLASSPYCQSIEKVFLTGGAEIFREALHAPGCEAIHITEIEASIECDTFMPRIDFSVFHPWYTSFPLVENGIRYSFNTYVRVRSSTEESQSLITDPVLYDNSNALNLRLVEEIISEGTVKDDRTGTGTLSKLGSKMRFNLRRSFPVNNQVINWICNLFYSIDLKEREEGDLGPVYGFQWRHLGARYTNMHDDYSGQGFDQLLDVINKIKHNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTYMIAHVCDLVPGDFIHVIGDAHVYRNHVKPLQEQLLQNLPKPFPILKINPKKKDIDSFVAADFKLIGYDPHQKIEMKMAV*