AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021348.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021348.01.T01 MTR_4g072210 97.802 273 6 0 1 273 1 273 0.0 553
MsG0480021348.01.T01 MTR_5g021980 70.886 237 67 1 32 266 36 272 5.65e-127 362
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021348.01.T01 AT5G45600 68.382 272 81 1 1 272 1 267 4.74e-144 405
MsG0480021348.01.T01 AT5G45600 68.382 272 80 1 1 272 1 266 8.54e-144 404
MsG0480021348.01.T01 AT2G18000 58.750 240 97 1 33 270 24 263 7.87e-105 306
MsG0480021348.01.T01 AT2G18000 58.889 180 72 1 27 204 18 197 1.29e-78 236

Find 60 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCTGCTTCTGAGAAATTC+AGG 0.264995 4:-56915063 None:intergenic
TATTTCTCACCCAATCAAAA+TGG 0.267469 4:+56912918 MsG0480021348.01.T01:CDS
TATACGGGAACGTAGCATTT+TGG 0.267574 4:+56913815 MsG0480021348.01.T01:CDS
CAAGGTATCAATCACATAAA+TGG 0.269072 4:+56913976 MsG0480021348.01.T01:intron
TTCAGGAACCATTGGCTTAA+GGG 0.287646 4:-56915046 None:intergenic
ATTAGTGTTCCAATAGTATA+CGG 0.306773 4:+56913799 MsG0480021348.01.T01:CDS
ATTCAGGAACCATTGGCTTA+AGG 0.353599 4:-56915047 None:intergenic
GCTACGTTCCCGTATACTAT+TGG 0.356357 4:-56913808 None:intergenic
AAGGAACTGCCTTCATCATC+TGG 0.371847 4:-56914741 None:intergenic
GCTGGCAGCAGCTCGTCAGC+AGG 0.387535 4:+56915096 MsG0480021348.01.T01:CDS
AGTCTTGGCATGTTCACAAC+TGG 0.396171 4:-56914855 None:intergenic
AACAGGCTTCTTTGTGGAAA+AGG 0.415370 4:-56914760 None:intergenic
CACAACAACAGGCTTCTTTG+TGG 0.416649 4:-56914766 None:intergenic
CTGAGAAATTCAGGAACCAT+TGG 0.419880 4:-56915054 None:intergenic
TCATAAAATTCCACAACAAC+AGG 0.422701 4:-56914777 None:intergenic
GGAGGCAAGGTAAGCCCAGC+AGG 0.425533 4:-56914879 None:intergenic
CACAAAGAAGCCTGTTGTTG+TGG 0.444280 4:+56914767 MsG0480021348.01.T01:CDS
TGGAGCATCCAACGAGGACC+TGG 0.447185 4:+56914013 MsG0480021348.01.T01:CDS
TAATTATATATCTATTGGTC+AGG 0.454108 4:-56917226 None:intergenic
TGAGTTGTCAGAGGCAGGAT+GGG 0.486427 4:+56914115 MsG0480021348.01.T01:CDS
TACCTTCTTATCATTGTCAT+CGG 0.494938 4:-56912947 None:intergenic
CGTTTACTAGCATCTTCGAT+TGG 0.501880 4:-56914998 None:intergenic
GTAAGCCCAGCAGGTAGTCT+TGG 0.502144 4:-56914870 None:intergenic
CAATCGAAGATGCTAGTAAA+CGG 0.502979 4:+56914999 MsG0480021348.01.T01:CDS
CAAGATCAGTCTCAATTAAG+TGG 0.506486 4:+56912886 MsG0480021348.01.T01:CDS
TTGAGTTGTCAGAGGCAGGA+TGG 0.507623 4:+56914114 MsG0480021348.01.T01:CDS
ATTTCTCACCCAATCAAAAT+GGG 0.508818 4:+56912919 MsG0480021348.01.T01:CDS
AGCAGATGAACTCTTGCAGC+TGG 0.510733 4:+56915078 MsG0480021348.01.T01:CDS
TTACTCTTTGTGTAGAACTC+AGG 0.519723 4:+56913754 MsG0480021348.01.T01:intron
ATCCGATGACAATGATAAGA+AGG 0.520538 4:+56912945 MsG0480021348.01.T01:CDS
CCTGCCTCTGACAACTCAAA+AGG 0.523948 4:-56914110 None:intergenic
CAATAATCCCACAAGGATTG+TGG 0.525358 4:+56914079 MsG0480021348.01.T01:CDS
TTTGATTGGGTGAGAAATAG+GGG 0.531862 4:-56912914 None:intergenic
GGAGCATCCAACGAGGACCT+GGG 0.547877 4:+56914014 MsG0480021348.01.T01:CDS
GAGTTGTCAGAGGCAGGATG+GGG 0.549359 4:+56914116 MsG0480021348.01.T01:CDS
GTCTTGGCATGTTCACAACT+GGG 0.560043 4:-56914854 None:intergenic
AAATGGACTATATATGTTCG+TGG 0.565195 4:+56913993 MsG0480021348.01.T01:CDS
GGTGCATCCACAATCCTTGT+GGG 0.565259 4:-56914086 None:intergenic
AAGATAATCCCTTAAGCCAA+TGG 0.568475 4:+56915038 MsG0480021348.01.T01:CDS
CAAAGTAACATACTAGGAGG+AGG 0.586112 4:-56914897 None:intergenic
GAGCATCCAACGAGGACCTG+GGG 0.590570 4:+56914015 MsG0480021348.01.T01:CDS
AACATGCCAAGACTACCTGC+TGG 0.595578 4:+56914864 MsG0480021348.01.T01:CDS
TTAGTGTTCCAATAGTATAC+GGG 0.596441 4:+56913800 MsG0480021348.01.T01:CDS
TAACATACTAGGAGGAGGCA+AGG 0.606191 4:-56914892 None:intergenic
AGGTGCATCCACAATCCTTG+TGG 0.606632 4:-56914087 None:intergenic
CAAACGACTCACAAGTTCAC+AGG 0.610052 4:-56914191 None:intergenic
TATACAGATATCATCAGTTG+AGG 0.617329 4:+56914712 MsG0480021348.01.T01:intron
GCCTCTGACAACTCAAAAGG+AGG 0.617900 4:-56914107 None:intergenic
CGACAGATAAGTTTGATCGA+TGG 0.622925 4:+56917178 MsG0480021348.01.T01:CDS
ACATGCCAAGACTACCTGCT+GGG 0.629730 4:+56914865 MsG0480021348.01.T01:CDS
AGGTTGTATCCAGATGATGA+AGG 0.632066 4:+56914732 MsG0480021348.01.T01:CDS
ATTGGGTGAGAAATAGGGGT+GGG 0.632597 4:-56912910 None:intergenic
GATTGGGTGAGAAATAGGGG+TGG 0.652805 4:-56912911 None:intergenic
CTAGTTTCAATAATCCCACA+AGG 0.653695 4:+56914072 MsG0480021348.01.T01:CDS
GATGCTAGTAAACGGAGGAG+AGG 0.657501 4:+56915007 MsG0480021348.01.T01:CDS
ACTGTGGAAATAAAGTGTGA+TGG 0.663057 4:-56914153 None:intergenic
AGCATCCAACGAGGACCTGG+GGG 0.700369 4:+56914016 MsG0480021348.01.T01:CDS
TCGAAGATGCTAGTAAACGG+AGG 0.723176 4:+56915002 MsG0480021348.01.T01:CDS
TGTTCGTGGAGCATCCAACG+AGG 0.768144 4:+56914007 MsG0480021348.01.T01:CDS
GCTTGTCGCAAACATCACTG+TGG 0.771336 4:-56914169 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAGTAAAAGATAAAATAA+AGG - Chr4:56913370-56913389 None:intergenic 10.0%
!! TTATCATTATTAATAAAATG+CGG - Chr4:56914481-56914500 None:intergenic 10.0%
!!! ATTAAAAAGTTAGTTTAATT+AGG + Chr4:56915947-56915966 MsG0480021348.01.T01:intron 10.0%
!!! TTAAAAAGTTAGTTTAATTA+GGG + Chr4:56915948-56915967 MsG0480021348.01.T01:intron 10.0%
!!! TTTTTCTTAAATAAGATTAT+TGG + Chr4:56915534-56915553 MsG0480021348.01.T01:intron 10.0%
!! AATATATGTATTGCTTAAAT+GGG + Chr4:56913903-56913922 MsG0480021348.01.T01:intron 15.0%
!! AATATGCTTAAATAAATTTC+TGG + Chr4:56915780-56915799 MsG0480021348.01.T01:intron 15.0%
!! ATCTATTCTAATTAATACAA+AGG - Chr4:56915505-56915524 None:intergenic 15.0%
!! CAACTTAATAATAAAATACA+AGG - Chr4:56916665-56916684 None:intergenic 15.0%
!! TAAGAACAAAGAAAATATTT+AGG - Chr4:56916019-56916038 None:intergenic 15.0%
!! TAATATATGTATTGCTTAAA+TGG + Chr4:56913902-56913921 MsG0480021348.01.T01:intron 15.0%
!! TTAATTAAAACAACAATTGA+AGG - Chr4:56913881-56913900 None:intergenic 15.0%
!!! ATATTTTGAATAAAACCATT+TGG - Chr4:56915599-56915618 None:intergenic 15.0%
!! AAAGAAAATATTTAGGAAAG+AGG - Chr4:56916012-56916031 None:intergenic 20.0%
!! AAAGCTTCAAATTTGAATAA+AGG - Chr4:56913061-56913080 None:intergenic 20.0%
!! AAATTGATGAAAGATAATAG+AGG - Chr4:56916306-56916325 None:intergenic 20.0%
!! AACAATGTTTATGTTATACA+AGG + Chr4:56913958-56913977 MsG0480021348.01.T01:intron 20.0%
!! AACATATAATCAAGAATCTT+CGG + Chr4:56915379-56915398 MsG0480021348.01.T01:intron 20.0%
!! AAGTTAATTCTATCATCAAA+AGG + Chr4:56916765-56916784 MsG0480021348.01.T01:intron 20.0%
!! AATTTGCACTGTATATTTAA+TGG + Chr4:56915982-56916001 MsG0480021348.01.T01:intron 20.0%
!! AGTTAATTCTATCATCAAAA+GGG + Chr4:56916766-56916785 MsG0480021348.01.T01:intron 20.0%
!! ATTATCTTTCATCAATTTAC+AGG + Chr4:56916308-56916327 MsG0480021348.01.T01:intron 20.0%
!! CAGAAATAAAAAGTAAATCA+TGG - Chr4:56916558-56916577 None:intergenic 20.0%
!! TAAATCATTTAGTTACAAAC+AGG - Chr4:56916229-56916248 None:intergenic 20.0%
!! TGTTCTAATAATATCTATGT+GGG + Chr4:56915711-56915730 MsG0480021348.01.T01:intron 20.0%
!! TTCAAATAAATGTATCATCA+TGG - Chr4:56915187-56915206 None:intergenic 20.0%
!! TTGTTCTAATAATATCTATG+TGG + Chr4:56915710-56915729 MsG0480021348.01.T01:intron 20.0%
!!! ATTTTGACATTCACAAAATA+TGG - Chr4:56914655-56914674 None:intergenic 20.0%
!!! TTTTACTCAAATAAGATTGT+AGG + Chr4:56916175-56916194 MsG0480021348.01.T01:intron 20.0%
! AAATAGTGTTTCATTAATCG+TGG + Chr4:56916875-56916894 MsG0480021348.01.T01:intron 25.0%
! AACAATTTACAGCAAGTATA+TGG + Chr4:56915215-56915234 MsG0480021348.01.T01:intron 25.0%
! AAGATGAAATAACTATCAGT+TGG - Chr4:56917118-56917137 None:intergenic 25.0%
! AATAAGCTAAAAACATCCAA+AGG - Chr4:56913294-56913313 None:intergenic 25.0%
! AATGAATAACTTTCAAGCAT+TGG - Chr4:56914574-56914593 None:intergenic 25.0%
! ACATCCATTATTATCAATTG+TGG + Chr4:56916412-56916431 MsG0480021348.01.T01:intron 25.0%
! ACGTTAATTAAACTCAAATG+TGG - Chr4:56914956-56914975 None:intergenic 25.0%
! ATTAGTGTTCCAATAGTATA+CGG + Chr4:56913799-56913818 MsG0480021348.01.T01:CDS 25.0%
! CAATTCAATCAAGTCAATAA+GGG - Chr4:56913516-56913535 None:intergenic 25.0%
! CATCCATTATTATCAATTGT+GGG + Chr4:56916413-56916432 MsG0480021348.01.T01:intron 25.0%
! CCATTATCATCAATATATTG+TGG + Chr4:56915681-56915700 MsG0480021348.01.T01:intron 25.0%
! GTTAATGATATGTAACAAAC+AGG - Chr4:56914364-56914383 None:intergenic 25.0%
! GTTCTAATAATATCTATGTG+GGG + Chr4:56915712-56915731 MsG0480021348.01.T01:intron 25.0%
! TCAACGAATAATACAAAAGT+GGG - Chr4:56915467-56915486 None:intergenic 25.0%
! TCAATTCAATCAAGTCAATA+AGG - Chr4:56913517-56913536 None:intergenic 25.0%
! TCATCAATATATTGTGGATT+AGG + Chr4:56915687-56915706 MsG0480021348.01.T01:intron 25.0%
! TGATTATATGTTTAGAAGTG+TGG - Chr4:56915371-56915390 None:intergenic 25.0%
! TGTTCTAATAATTTCTATGC+CGG + Chr4:56916443-56916462 MsG0480021348.01.T01:intron 25.0%
! TTATTTGAGCTTATCTATTG+AGG + Chr4:56913543-56913562 MsG0480021348.01.T01:intron 25.0%
! TTGTGATTGTTCATCATTTA+AGG + Chr4:56915643-56915662 MsG0480021348.01.T01:intron 25.0%
!! ATCATTTAAGGATTTGTTTC+TGG + Chr4:56915655-56915674 MsG0480021348.01.T01:intron 25.0%
!! CCACAATATATTGATGATAA+TGG - Chr4:56915684-56915703 None:intergenic 25.0%
!! TGTATGTTTTCAAAAATCAC+AGG + Chr4:56916818-56916837 MsG0480021348.01.T01:intron 25.0%
!!! CTTAAATAAATTTCTGGTCT+TGG + Chr4:56915786-56915805 MsG0480021348.01.T01:intron 25.0%
!!! GAAGTACACAATTTTTTGTA+AGG - Chr4:56915836-56915855 None:intergenic 25.0%
!!! GTTGTAAAAAGCGTTATTTT+GGG - Chr4:56913004-56913023 None:intergenic 25.0%
!!! GTTGTTTTCATAAACTATTC+AGG - Chr4:56913329-56913348 None:intergenic 25.0%
!!! GTTGTTTTTGATTTAGTCTT+TGG + Chr4:56914216-56914235 MsG0480021348.01.T01:intron 25.0%
!!! TAGTTATTTCATCTTTTCCA+TGG + Chr4:56917123-56917142 MsG0480021348.01.T01:intron 25.0%
AACAGTGAATAATAGACCTA+TGG - Chr4:56914611-56914630 None:intergenic 30.0%
AACTCTACTAATCCCAAAAT+TGG - Chr4:56916124-56916143 None:intergenic 30.0%
AAGCATTTGTGATACTCTTT+GGG + Chr4:56913261-56913280 MsG0480021348.01.T01:intron 30.0%
ATGTACAATCGACATTTCTA+GGG - Chr4:56915302-56915321 None:intergenic 30.0%
ATTTCTCACCCAATCAAAAT+GGG + Chr4:56912919-56912938 MsG0480021348.01.T01:CDS 30.0%
CAATTGCAAAGTAACATACT+AGG - Chr4:56914906-56914925 None:intergenic 30.0%
CCATGATAGCTTAATGAAAA+TGG + Chr4:56913650-56913669 MsG0480021348.01.T01:intron 30.0%
GGTTAAACTACTTAGATACA+AGG + Chr4:56916795-56916814 MsG0480021348.01.T01:intron 30.0%
GTCAACGAATAATACAAAAG+TGG - Chr4:56915468-56915487 None:intergenic 30.0%
GTTAGATTGAGTTAGTAGTT+TGG + Chr4:56914443-56914462 MsG0480021348.01.T01:intron 30.0%
GTTCTAATAATTTCTATGCC+GGG + Chr4:56916444-56916463 MsG0480021348.01.T01:intron 30.0%
TAAGCATTTGTGATACTCTT+TGG + Chr4:56913260-56913279 MsG0480021348.01.T01:intron 30.0%
TACAGACTTCATTATGAGTA+AGG - Chr4:56915247-56915266 None:intergenic 30.0%
TACCTTCTTATCATTGTCAT+CGG - Chr4:56912950-56912969 None:intergenic 30.0%
TATACAGATATCATCAGTTG+AGG + Chr4:56914712-56914731 MsG0480021348.01.T01:intron 30.0%
TATTTCTCACCCAATCAAAA+TGG + Chr4:56912918-56912937 MsG0480021348.01.T01:CDS 30.0%
TCAAAGTATGCTCAAAAGTA+GGG + Chr4:56914314-56914333 MsG0480021348.01.T01:intron 30.0%
TCATAAAATTCCACAACAAC+AGG - Chr4:56914780-56914799 None:intergenic 30.0%
TCATGGAAACAGTATATCTT+TGG - Chr4:56916541-56916560 None:intergenic 30.0%
TTAGTGTTCCAATAGTATAC+GGG + Chr4:56913800-56913819 MsG0480021348.01.T01:CDS 30.0%
TTCAAAGTATGCTCAAAAGT+AGG + Chr4:56914313-56914332 MsG0480021348.01.T01:intron 30.0%
TTCACACAAAAAATGTGCTA+AGG + Chr4:56913934-56913953 MsG0480021348.01.T01:intron 30.0%
TTGATATACTACATGACCAT+AGG + Chr4:56914592-56914611 MsG0480021348.01.T01:intron 30.0%
TTTATGCACTCCGAAAAAAA+GGG - Chr4:56913031-56913050 None:intergenic 30.0%
! AACTACTTTGTTTACCCAAA+TGG - Chr4:56916716-56916735 None:intergenic 30.0%
! CAAGGTATCAATCACATAAA+TGG + Chr4:56913976-56913995 MsG0480021348.01.T01:intron 30.0%
! CCATTTTCATTAAGCTATCA+TGG - Chr4:56913653-56913672 None:intergenic 30.0%
! CTATTGAGGTAAACACTTTT+GGG + Chr4:56913557-56913576 MsG0480021348.01.T01:intron 30.0%
! TCTATTGAGGTAAACACTTT+TGG + Chr4:56913556-56913575 MsG0480021348.01.T01:intron 30.0%
! TGACCCACAATTGATAATAA+TGG - Chr4:56916419-56916438 None:intergenic 30.0%
! TGTTGTGGAATTTTATGATG+AGG + Chr4:56914782-56914801 MsG0480021348.01.T01:CDS 30.0%
!! AAATGGACTATATATGTTCG+TGG + Chr4:56913993-56914012 MsG0480021348.01.T01:CDS 30.0%
!! TTTTGATTGGGTGAGAAATA+GGG - Chr4:56912918-56912937 None:intergenic 30.0%
!!! ACTTTATTTTCCCCATAAAC+AGG - Chr4:56914245-56914264 None:intergenic 30.0%
!!! ATTTTGATTGGGTGAGAAAT+AGG - Chr4:56912919-56912938 None:intergenic 30.0%
!!! CCTTTGTTTTCATTCAGATT+CGG + Chr4:56912971-56912990 MsG0480021348.01.T01:intron 30.0%
!!! GCTTCAACTCTATTTTTGTT+TGG + Chr4:56916085-56916104 MsG0480021348.01.T01:intron 30.0%
!!! GGTTGTAAAAAGCGTTATTT+TGG - Chr4:56913005-56913024 None:intergenic 30.0%
!!! TACAACCATACCCTTTTTTT+CGG + Chr4:56913018-56913037 MsG0480021348.01.T01:intron 30.0%
!!! TTAGCACATTTTTTGTGTGA+AGG - Chr4:56913935-56913954 None:intergenic 30.0%
AAGATAATCCCTTAAGCCAA+TGG + Chr4:56915038-56915057 MsG0480021348.01.T01:CDS 35.0%
ACTGAACATGGTCAATGATT+TGG - Chr4:56916614-56916633 None:intergenic 35.0%
ACTGTGGAAATAAAGTGTGA+TGG - Chr4:56914156-56914175 None:intergenic 35.0%
AGAGTTTAGCATACTGAACA+TGG - Chr4:56916626-56916645 None:intergenic 35.0%
AGATCACAGTATCACACAAA+AGG - Chr4:56914275-56914294 None:intergenic 35.0%
ATCATACATGTACACGTGTT+TGG + Chr4:56915266-56915285 MsG0480021348.01.T01:intron 35.0%
ATCCGATGACAATGATAAGA+AGG + Chr4:56912945-56912964 MsG0480021348.01.T01:CDS 35.0%
ATCCTTTAATGAACAAGCAC+AGG - Chr4:56916383-56916402 None:intergenic 35.0%
CAAGATCAGTCTCAATTAAG+TGG + Chr4:56912886-56912905 MsG0480021348.01.T01:CDS 35.0%
CAATCGAAGATGCTAGTAAA+CGG + Chr4:56914999-56915018 MsG0480021348.01.T01:CDS 35.0%
CAATCTAACTGAACTTAGCA+GGG - Chr4:56914432-56914451 None:intergenic 35.0%
CATGTACAATCGACATTTCT+AGG - Chr4:56915303-56915322 None:intergenic 35.0%
CCGAATCTGAATGAAAACAA+AGG - Chr4:56912974-56912993 None:intergenic 35.0%
CTAGTTTCAATAATCCCACA+AGG + Chr4:56914072-56914091 MsG0480021348.01.T01:CDS 35.0%
CTATCATCAAAAGGGAAATG+TGG + Chr4:56916774-56916793 MsG0480021348.01.T01:intron 35.0%
CTTTATGCACTCCGAAAAAA+AGG - Chr4:56913032-56913051 None:intergenic 35.0%
GATCACAGTATCACACAAAA+GGG - Chr4:56914274-56914293 None:intergenic 35.0%
TAAAAAAGCTTCAGAGGGAT+CGG - Chr4:56914817-56914836 None:intergenic 35.0%
TACCTGTGCTTGTTCATTAA+AGG + Chr4:56916378-56916397 MsG0480021348.01.T01:intron 35.0%
TCAATCTAACTGAACTTAGC+AGG - Chr4:56914433-56914452 None:intergenic 35.0%
TGATGAACAATCACAAGAGA+TGG - Chr4:56915639-56915658 None:intergenic 35.0%
TGTATCAACTTCCACAAATG+AGG - Chr4:56916996-56917015 None:intergenic 35.0%
TTACTCTTTCTTGACGACTT+TGG + Chr4:56917053-56917072 MsG0480021348.01.T01:intron 35.0%
TTACTCTTTGTGTAGAACTC+AGG + Chr4:56913754-56913773 MsG0480021348.01.T01:intron 35.0%
TTGCAAAGTAACATACTAGG+AGG - Chr4:56914903-56914922 None:intergenic 35.0%
TTTGATTGGGTGAGAAATAG+GGG - Chr4:56912917-56912936 None:intergenic 35.0%
! AGCATTTTGAATATTCAGCC+CGG - Chr4:56916465-56916484 None:intergenic 35.0%
! ATGATGCTTACGTCCAATTT+TGG + Chr4:56916108-56916127 MsG0480021348.01.T01:intron 35.0%
! GATTCTTGTTTGTGACCAAA+TGG + Chr4:56915581-56915600 MsG0480021348.01.T01:intron 35.0%
! TGATGCTTACGTCCAATTTT+GGG + Chr4:56916109-56916128 MsG0480021348.01.T01:intron 35.0%
!! ATCGTGATTTTTCGAAGATG+AGG - Chr4:56912866-56912885 None:intergenic 35.0%
!!! AGGTAAACACTTTTGGGTTT+GGG + Chr4:56913563-56913582 MsG0480021348.01.T01:intron 35.0%
AAAAAAGCTTCAGAGGGATC+GGG - Chr4:56914816-56914835 None:intergenic 40.0%
AACAGGCTTCTTTGTGGAAA+AGG - Chr4:56914763-56914782 None:intergenic 40.0%
ACGAGCTAAAAAAGCTTCAG+AGG - Chr4:56914823-56914842 None:intergenic 40.0%
AGGTTGTATCCAGATGATGA+AGG + Chr4:56914732-56914751 MsG0480021348.01.T01:CDS 40.0%
AGTCTTTGGTTGCCTGTTTA+TGG + Chr4:56914230-56914249 MsG0480021348.01.T01:intron 40.0%
CAAAGTAACATACTAGGAGG+AGG - Chr4:56914900-56914919 None:intergenic 40.0%
CAAGAATCCTTTACATGCAC+AGG - Chr4:56915569-56915588 None:intergenic 40.0%
CAATAATCCCACAAGGATTG+TGG + Chr4:56914079-56914098 MsG0480021348.01.T01:CDS 40.0%
CGACAGATAAGTTTGATCGA+TGG + Chr4:56917178-56917197 MsG0480021348.01.T01:CDS 40.0%
CGAGCTAAAAAAGCTTCAGA+GGG - Chr4:56914822-56914841 None:intergenic 40.0%
CGTTTACTAGCATCTTCGAT+TGG - Chr4:56915001-56915020 None:intergenic 40.0%
CTGAGAAATTCAGGAACCAT+TGG - Chr4:56915057-56915076 None:intergenic 40.0%
GTAGTTACCTGTGCATGTAA+AGG + Chr4:56915559-56915578 MsG0480021348.01.T01:intron 40.0%
GTATGCTAAACTCTGTGTGA+TGG + Chr4:56916632-56916651 MsG0480021348.01.T01:intron 40.0%
GTCTTTGGTTGCCTGTTTAT+GGG + Chr4:56914231-56914250 MsG0480021348.01.T01:intron 40.0%
TCTGTGATCATGCTCTATAG+AGG + Chr4:56916574-56916593 MsG0480021348.01.T01:intron 40.0%
TCTTTGGTTGCCTGTTTATG+GGG + Chr4:56914232-56914251 MsG0480021348.01.T01:intron 40.0%
TGCTTATGTGTCCTCATTTG+TGG + Chr4:56916982-56917001 MsG0480021348.01.T01:intron 40.0%
TGTAAAGTCTTGCAGTACTG+TGG + Chr4:56914399-56914418 MsG0480021348.01.T01:intron 40.0%
! CATCTGCTTCTGAGAAATTC+AGG - Chr4:56915066-56915085 None:intergenic 40.0%
! CTCTTTGGGAAGATTTCCTT+TGG + Chr4:56913275-56913294 MsG0480021348.01.T01:intron 40.0%
! TATACGGGAACGTAGCATTT+TGG + Chr4:56913815-56913834 MsG0480021348.01.T01:CDS 40.0%
! TTTCATCTTTTCCATGGCGT+AGG + Chr4:56917129-56917148 MsG0480021348.01.T01:intron 40.0%
!! ATTCAGGAACCATTGGCTTA+AGG - Chr4:56915050-56915069 None:intergenic 40.0%
!! TCGGATTTGCCCATTTTGAT+TGG - Chr4:56912931-56912950 None:intergenic 40.0%
!! TTCAGGAACCATTGGCTTAA+GGG - Chr4:56915049-56915068 None:intergenic 40.0%
!!! CGGATTTGCCCATTTTGATT+GGG - Chr4:56912930-56912949 None:intergenic 40.0%
!!! GAGGTAAACACTTTTGGGTT+TGG + Chr4:56913562-56913581 MsG0480021348.01.T01:intron 40.0%
AAAAAGCTTCAGAGGGATCG+GGG - Chr4:56914815-56914834 None:intergenic 45.0%
AAGGAACTGCCTTCATCATC+TGG - Chr4:56914744-56914763 None:intergenic 45.0%
AGTCTTGGCATGTTCACAAC+TGG - Chr4:56914858-56914877 None:intergenic 45.0%
ATTGGGTGAGAAATAGGGGT+GGG - Chr4:56912913-56912932 None:intergenic 45.0%
CAAACGACTCACAAGTTCAC+AGG - Chr4:56914194-56914213 None:intergenic 45.0%
CACAAAGAAGCCTGTTGTTG+TGG + Chr4:56914767-56914786 MsG0480021348.01.T01:CDS 45.0%
CACAACAACAGGCTTCTTTG+TGG - Chr4:56914769-56914788 None:intergenic 45.0%
GATCTCTTGCTTCAGTGTAG+AGG + Chr4:56914290-56914309 MsG0480021348.01.T01:intron 45.0%
GCACTCCGAAAAAAAGGGTA+TGG - Chr4:56913026-56913045 None:intergenic 45.0%
GCTACGTTCCCGTATACTAT+TGG - Chr4:56913811-56913830 None:intergenic 45.0%
GTCTTGGCATGTTCACAACT+GGG - Chr4:56914857-56914876 None:intergenic 45.0%
TAACATACTAGGAGGAGGCA+AGG - Chr4:56914895-56914914 None:intergenic 45.0%
TCGAAGATGCTAGTAAACGG+AGG + Chr4:56915002-56915021 MsG0480021348.01.T01:CDS 45.0%
TGTGGAAAAATGAAAGCCGC+AGG - Chr4:56914938-56914957 None:intergenic 45.0%
! GGCAACACAGTTTTCTCACA+AGG - Chr4:56917097-56917116 None:intergenic 45.0%
! TTTGGGTTTGGGAGAACTGA+TGG + Chr4:56913574-56913593 MsG0480021348.01.T01:intron 45.0%
!! CAAGTTGATTGCTCGAGTTG+TGG + Chr4:56916689-56916708 MsG0480021348.01.T01:intron 45.0%
!!! ACCTCCTTTTGAGTTGTCAG+AGG + Chr4:56914106-56914125 MsG0480021348.01.T01:CDS 45.0%
!!! TTTAAAATATATAATATTTG+TGG + Chr4:56915140-56915159 MsG0480021348.01.T01:intron 5.0%
AACATGCCAAGACTACCTGC+TGG + Chr4:56914864-56914883 MsG0480021348.01.T01:CDS 50.0%
ACATGCCAAGACTACCTGCT+GGG + Chr4:56914865-56914884 MsG0480021348.01.T01:CDS 50.0%
AGCAGATGAACTCTTGCAGC+TGG + Chr4:56915078-56915097 MsG0480021348.01.T01:CDS 50.0%
AGGTGCATCCACAATCCTTG+TGG - Chr4:56914090-56914109 None:intergenic 50.0%
ATGAAAGCCGCAGGTGACTA+TGG - Chr4:56914929-56914948 None:intergenic 50.0%
ATGAGCTTGAACCTACGCCA+TGG - Chr4:56917143-56917162 None:intergenic 50.0%
CACGCTTTACAATAACCCCC+AGG - Chr4:56914034-56914053 None:intergenic 50.0%
CAGGAATTCCTCTCATGCAC+AGG - Chr4:56916210-56916229 None:intergenic 50.0%
CCTGCCTCTGACAACTCAAA+AGG - Chr4:56914113-56914132 None:intergenic 50.0%
GATGCTAGTAAACGGAGGAG+AGG + Chr4:56915007-56915026 MsG0480021348.01.T01:CDS 50.0%
GATTGGGTGAGAAATAGGGG+TGG - Chr4:56912914-56912933 None:intergenic 50.0%
GCAATTGCCATAGTCACCTG+CGG + Chr4:56914919-56914938 MsG0480021348.01.T01:intron 50.0%
GCCTCTGACAACTCAAAAGG+AGG - Chr4:56914110-56914129 None:intergenic 50.0%
GCTTGTCGCAAACATCACTG+TGG - Chr4:56914172-56914191 None:intergenic 50.0%
GGTGCATCCACAATCCTTGT+GGG - Chr4:56914089-56914108 None:intergenic 50.0%
TGAGTTGTCAGAGGCAGGAT+GGG + Chr4:56914115-56914134 MsG0480021348.01.T01:CDS 50.0%
! GCTCGAGTTGTGGTCCATTT+GGG + Chr4:56916699-56916718 MsG0480021348.01.T01:intron 50.0%
! TGCTCGAGTTGTGGTCCATT+TGG + Chr4:56916698-56916717 MsG0480021348.01.T01:intron 50.0%
! TGTACTGACCTGTGCATGAG+AGG + Chr4:56916199-56916218 MsG0480021348.01.T01:intron 50.0%
! TTGAGTTGTCAGAGGCAGGA+TGG + Chr4:56914114-56914133 MsG0480021348.01.T01:CDS 50.0%
!!! CCTTTTGAGTTGTCAGAGGC+AGG + Chr4:56914110-56914129 MsG0480021348.01.T01:CDS 50.0%
!!! GGGAACGTAGCATTTTGGCT+TGG + Chr4:56913820-56913839 MsG0480021348.01.T01:CDS 50.0%
AATAACCCCCAGGTCCTCGT+TGG - Chr4:56914024-56914043 None:intergenic 55.0%
CAGCTCGTCAGCAGGTATGA+TGG + Chr4:56915104-56915123 MsG0480021348.01.T01:intron 55.0%
GAGTTGTCAGAGGCAGGATG+GGG + Chr4:56914116-56914135 MsG0480021348.01.T01:CDS 55.0%
GTAAGCCCAGCAGGTAGTCT+TGG - Chr4:56914873-56914892 None:intergenic 55.0%
! TGTTCGTGGAGCATCCAACG+AGG + Chr4:56914007-56914026 MsG0480021348.01.T01:CDS 55.0%
AGCATCCAACGAGGACCTGG+GGG + Chr4:56914016-56914035 MsG0480021348.01.T01:CDS 60.0%
GAGCATCCAACGAGGACCTG+GGG + Chr4:56914015-56914034 MsG0480021348.01.T01:CDS 60.0%
! GGAGCATCCAACGAGGACCT+GGG + Chr4:56914014-56914033 MsG0480021348.01.T01:CDS 60.0%
! TGGAGCATCCAACGAGGACC+TGG + Chr4:56914013-56914032 MsG0480021348.01.T01:CDS 60.0%
GGAGGCAAGGTAAGCCCAGC+AGG - Chr4:56914882-56914901 None:intergenic 65.0%
GCTGGCAGCAGCTCGTCAGC+AGG + Chr4:56915096-56915115 MsG0480021348.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 56912853 56917237 56912853 ID=MsG0480021348.01;Name=MsG0480021348.01
Chr4 mRNA 56912853 56917237 56912853 ID=MsG0480021348.01.T01;Parent=MsG0480021348.01;Name=MsG0480021348.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|6|0|273
Chr4 exon 56912853 56912966 56912853 ID=MsG0480021348.01.T01:exon:7124;Parent=MsG0480021348.01.T01
Chr4 exon 56913769 56913857 56913769 ID=MsG0480021348.01.T01:exon:7125;Parent=MsG0480021348.01.T01
Chr4 exon 56913980 56914201 56913980 ID=MsG0480021348.01.T01:exon:7126;Parent=MsG0480021348.01.T01
Chr4 exon 56914719 56914906 56914719 ID=MsG0480021348.01.T01:exon:7127;Parent=MsG0480021348.01.T01
Chr4 exon 56914996 56915117 56914996 ID=MsG0480021348.01.T01:exon:7128;Parent=MsG0480021348.01.T01
Chr4 exon 56917151 56917237 56917151 ID=MsG0480021348.01.T01:exon:7129;Parent=MsG0480021348.01.T01
Chr4 CDS 56912853 56912966 56912853 ID=MsG0480021348.01.T01:cds;Parent=MsG0480021348.01.T01
Chr4 CDS 56913769 56913857 56913769 ID=MsG0480021348.01.T01:cds;Parent=MsG0480021348.01.T01
Chr4 CDS 56913980 56914201 56913980 ID=MsG0480021348.01.T01:cds;Parent=MsG0480021348.01.T01
Chr4 CDS 56914719 56914906 56914719 ID=MsG0480021348.01.T01:cds;Parent=MsG0480021348.01.T01
Chr4 CDS 56914996 56915117 56914996 ID=MsG0480021348.01.T01:cds;Parent=MsG0480021348.01.T01
Chr4 CDS 56917151 56917237 56917151 ID=MsG0480021348.01.T01:cds;Parent=MsG0480021348.01.T01
Gene Sequence

>MsG0480021348.01.T01

ATGCTCAACACCTCATCTTCGAAAAATCACGATCAAGATCAGTCTCAATTAAGTGGTCCCACCCCTATTTCTCACCCAATCAAAATGGGCAAATCCGATGACAATGATAAGAAGAACTCAGGTAAGAAACTCAAAGATGTAGAAATTAGTGTTCCAATAGTATACGGGAACGTAGCATTTTGGCTTGGCAAAAAAGCTAGTGAGTATCAATCACATAAATGGACTATATATGTTCGTGGAGCATCCAACGAGGACCTGGGGGTTATTGTAAAGCGTGTTGTTTTTCAGTTGCATACTAGTTTCAATAATCCCACAAGGATTGTGGATGCACCTCCTTTTGAGTTGTCAGAGGCAGGATGGGGAGAATTTGAAATTGCCATCACACTTTATTTCCACAGTGATGTTTGCGACAAGCCTGTGAACTTATATCATCAGTTGAGGTTGTATCCAGATGATGAAGGCAGTTCCTTTTCCACAAAGAAGCCTGTTGTTGTGGAATTTTATGATGAGGTAGTTTTCCCCGATCCCTCTGAAGCTTTTTTAGCTCGTGTGCAGAATCACCCAGTTGTGAACATGCCAAGACTACCTGCTGGGCTTACCTTGCCTCCTCCTATTCCAATCGAAGATGCTAGTAAACGGAGGAGAGGTGATACTAAAGATAATCCCTTAAGCCAATGGTTCCTGAATTTCTCAGAAGCAGATGAACTCTTGCAGCTGGCAGCAGCTCGTCAGCAGGTTCAAGCTCATATTTCAAAACTCAAACGACAGATAAGTTTGATCGATGGACAGCATAAACAGCTTAAATCTTCTCCTGACCAATAG
Protein sequence

>MsG0480021348.01.T01

MLNTSSSKNHDQDQSQLSGPTPISHPIKMGKSDDNDKKNSGKKLKDVEISVPIVYGNVAFWLGKKASEYQSHKWTIYVRGASNEDLGVIVKRVVFQLHTSFNNPTRIVDAPPFELSEAGWGEFEIAITLYFHSDVCDKPVNLYHQLRLYPDDEGSSFSTKKPVVVEFYDEVVFPDPSEAFLARVQNHPVVNMPRLPAGLTLPPPIPIEDASKRRRGDTKDNPLSQWFLNFSEADELLQLAAARQQVQAHISKLKRQISLIDGQHKQLKSSPDQ*