AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021411.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021411.01.T01 MTR_4g074300 95.745 282 11 1 1 281 1 282 0.0 558
MsG0480021411.01.T01 MTR_4g074280 79.061 277 50 2 6 281 12 281 3.87e-153 429
MsG0480021411.01.T01 MTR_4g074330 71.538 260 71 2 22 281 46 302 5.89e-140 396
MsG0480021411.01.T01 MTR_4g077140 84.043 94 14 1 183 275 9 102 4.37e-51 163
MsG0480021411.01.T01 MTR_3g063510 84.211 57 9 0 65 121 5 61 3.03e-30 108
MsG0480021411.01.T01 MTR_4g074270 61.765 68 8 2 58 121 1 54 1.52e-16 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021411.01.T01 AT3G18630 63.019 265 93 3 19 281 69 330 5.01e-119 344

Find 72 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGAATACATTCTTCAAAA+TGG 0.220666 4:+57636886 None:intergenic
AAATTATAGTTGCCAGTCTA+TGG 0.259711 4:+57635517 None:intergenic
TCTGTTAAGGCTGTGATTCT+TGG 0.283322 4:-57637058 MsG0480021411.01.T01:CDS
AAGGAGCTTAAGAAAGATAT+TGG 0.300644 4:-57636866 MsG0480021411.01.T01:CDS
CTCTAAAACTAACCAACTTC+TGG 0.301966 4:-57635558 MsG0480021411.01.T01:CDS
TTAAATTCACATGCAAATAT+AGG 0.302412 4:-57636026 MsG0480021411.01.T01:CDS
AGCAATGGGGCTTTCATATT+CGG 0.315884 4:-57636933 MsG0480021411.01.T01:CDS
TGAAAGCGAAAATCTCATTC+TGG 0.333305 4:+57637143 None:intergenic
ACTGTGAAAAGAGGTTTCTT+TGG 0.334242 4:-57635695 MsG0480021411.01.T01:CDS
GACTGCTCCACAAGCATATC+AGG 0.339292 4:+57637229 None:intergenic
ATACATACTGTCATTGTGTT+TGG 0.340999 4:+57637345 None:intergenic
GCAGATTCTGCGGTTTCTCT+TGG 0.368092 4:+57637381 None:intergenic
TCTTTATCAGATATGGTTAC+GGG 0.385929 4:-57637265 MsG0480021411.01.T01:intron
TACATACTGTCATTGTGTTT+GGG 0.385978 4:+57637346 None:intergenic
TTCTTTATCAGATATGGTTA+CGG 0.401577 4:-57637266 MsG0480021411.01.T01:intron
TAACCAACTTCTGGAGCAAA+AGG 0.401614 4:-57635549 MsG0480021411.01.T01:CDS
TAAGGCTGTGATTCTTGGCC+AGG 0.414619 4:-57637053 MsG0480021411.01.T01:intron
GTTCTGATTGTATTCTTCTT+CGG 0.422844 4:+57637414 None:intergenic
GATGGACCTGGTCAAGCAAT+GGG 0.434454 4:-57636947 MsG0480021411.01.T01:CDS
ATATGCTTGTGGAGCAGTCT+TGG 0.446099 4:-57637225 MsG0480021411.01.T01:CDS
TCTTGGTTGGAAGCTTTACC+TGG 0.460927 4:-57637208 MsG0480021411.01.T01:CDS
ATTCACATGCAAATATAGGC+TGG 0.461912 4:-57636022 MsG0480021411.01.T01:CDS
GATGGAACTTTAACTCCCTC+TGG 0.466607 4:+57636908 None:intergenic
TTGCTGAATGCTGTTCTCAC+AGG 0.467980 4:-57636235 MsG0480021411.01.T01:intron
AGGGGATTGGTCCCATAGAC+TGG 0.470030 4:-57635529 MsG0480021411.01.T01:CDS
AATACATTCTTCAAAATGGA+TGG 0.480854 4:+57636890 None:intergenic
ATGCAAAGAGCCGGGGCGTA+AGG 0.481471 4:+57637172 None:intergenic
AGTCTGCTCAGGAGAAAATT+CGG 0.486511 4:-57635926 MsG0480021411.01.T01:intron
GGACGAACATGCAAAGAGCC+GGG 0.489820 4:+57637164 None:intergenic
TCCGAGGGCTTGAAAACCTA+TGG 0.492905 4:-57637454 MsG0480021411.01.T01:CDS
CAAGACGATCTCTGAGAAGA+AGG 0.497827 4:-57635976 MsG0480021411.01.T01:CDS
TTGAAAATCAAATGCGGAGG+AGG 0.498546 4:+57637106 None:intergenic
AGGGGTCGTGTTTCTGATGT+GGG 0.511121 4:-57635952 MsG0480021411.01.T01:CDS
TCCGCGTTGACTGTGAAAAG+AGG 0.513655 4:-57635704 MsG0480021411.01.T01:CDS
TGGACGAACATGCAAAGAGC+CGG 0.518558 4:+57637163 None:intergenic
CTTCTGGAGCAAAAGGGGAT+TGG 0.519411 4:-57635542 MsG0480021411.01.T01:CDS
CGATGGACCTGGTCAAGCAA+TGG 0.519690 4:-57636948 MsG0480021411.01.T01:CDS
AACCAACTTCTGGAGCAAAA+GGG 0.520287 4:-57635548 MsG0480021411.01.T01:CDS
GGTTGTTCCGTTCCATCTCA+CGG 0.526693 4:-57636845 MsG0480021411.01.T01:CDS
CGATCTCTGAGAAGAAGGAA+GGG 0.538663 4:-57635971 MsG0480021411.01.T01:CDS
TGTGTTTGGGAAGCCTTTCG+AGG 0.545130 4:+57637359 None:intergenic
GCCTTTCGAGGCAGATTCTG+CGG 0.547231 4:+57637371 None:intergenic
AAGATTGCCGTGAGATGGAA+CGG 0.550896 4:+57636838 None:intergenic
TTCACATGCAAATATAGGCT+GGG 0.551088 4:-57636021 MsG0480021411.01.T01:CDS
ACCGCAGAATCTGCCTCGAA+AGG 0.551608 4:-57637372 MsG0480021411.01.T01:CDS
ACGATCTCTGAGAAGAAGGA+AGG 0.552096 4:-57635972 MsG0480021411.01.T01:CDS
AATTATAGTTGCCAGTCTAT+GGG 0.552607 4:+57635518 None:intergenic
ACAGCCTTAACAGAATGAAA+AGG 0.557732 4:+57637067 None:intergenic
GCTTGACCAGGTCCATCGTA+AGG 0.561795 4:+57636953 None:intergenic
GCTTGTGGAGCAGTCTTGGT+TGG 0.566541 4:-57637221 MsG0480021411.01.T01:CDS
GATGTGGGGAGAGTCTGCTC+AGG 0.573326 4:-57635937 MsG0480021411.01.T01:CDS
GTATTCTTCTTCGGCAGAGA+GGG 0.577541 4:+57637423 None:intergenic
ACCAACTTCTGGAGCAAAAG+GGG 0.578543 4:-57635547 MsG0480021411.01.T01:CDS
AAGGGGTCGTGTTTCTGATG+TGG 0.582620 4:-57635953 MsG0480021411.01.T01:CDS
CTTTCATATTCGGTTCCAGA+GGG 0.583017 4:-57636923 MsG0480021411.01.T01:CDS
TAAACTACCTGATATGCTTG+TGG 0.584571 4:-57637236 MsG0480021411.01.T01:CDS
GGTTTCTCTTGGACAATGTG+AGG 0.589321 4:+57637392 None:intergenic
GAAAGCCCCATTGCTTGACC+AGG 0.595008 4:+57636941 None:intergenic
ATTTCACAAACCTTACGCCC+CGG 0.606591 4:-57637182 MsG0480021411.01.T01:CDS
AGAGAGGGCAGAGAAGCCAT+AGG 0.607045 4:+57637438 None:intergenic
ATGGCTTCTTCATACTCCGA+GGG 0.611571 4:-57637469 MsG0480021411.01.T01:CDS
TAGGAACCTTACGATGGACC+TGG 0.619125 4:-57636959 MsG0480021411.01.T01:CDS
GATCTCTGAGAAGAAGGAAG+GGG 0.625589 4:-57635970 MsG0480021411.01.T01:CDS
TAAGGTTTGTGAAATTCACC+AGG 0.630665 4:+57637190 None:intergenic
GCTTTCATATTCGGTTCCAG+AGG 0.636368 4:-57636924 MsG0480021411.01.T01:CDS
GACGAACATGCAAAGAGCCG+GGG 0.639763 4:+57637165 None:intergenic
TGTATTCTTCTTCGGCAGAG+AGG 0.656367 4:+57637422 None:intergenic
GGGGTCGTGTTTCTGATGTG+GGG 0.666438 4:-57635951 MsG0480021411.01.T01:CDS
AATGGCTTCTTCATACTCCG+AGG 0.670407 4:-57637470 MsG0480021411.01.T01:CDS
GCATTGAAAATCAAATGCGG+AGG 0.680649 4:+57637103 None:intergenic
AGAGCATTGAAAATCAAATG+CGG 0.706495 4:+57637100 None:intergenic
ATGGACCTGGTCAAGCAATG+GGG 0.712342 4:-57636946 MsG0480021411.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAACACAATTCAATATAAAA+AGG + Chr4:57637385-57637404 None:intergenic 15.0%
!! ACAAGCTGAAAATATATATT+TGG + Chr4:57636460-57636479 None:intergenic 20.0%
!! ATTTGTAAGAATGAAATGTT+AGG + Chr4:57636276-57636295 None:intergenic 20.0%
!! CAAAATAACAATGAAAACAA+CGG - Chr4:57636431-57636450 MsG0480021411.01.T01:intron 20.0%
!! TAAACACAATTCGATATAAA+AGG + Chr4:57637339-57637358 None:intergenic 20.0%
!! TACAGAATCAAAATAATGAA+TGG + Chr4:57636199-57636218 None:intergenic 20.0%
!! TTAAATTCACATGCAAATAT+AGG - Chr4:57636963-57636982 MsG0480021411.01.T01:intron 20.0%
!!! AAATGTTTATTTTTGTGGAA+TGG - Chr4:57637170-57637189 MsG0480021411.01.T01:CDS 20.0%
!!! AATTGGTTATTTTGATATTG+TGG - Chr4:57636230-57636249 MsG0480021411.01.T01:intron 20.0%
!!! ACAGCTTTAATTTAATTTCA+GGG - Chr4:57636724-57636743 MsG0480021411.01.T01:intron 20.0%
!!! ATTCTGATTTTGGTTATTTT+AGG - Chr4:57636011-57636030 MsG0480021411.01.T01:CDS 20.0%
!!! CATATTTTCTTTATCAGATA+TGG - Chr4:57635717-57635736 MsG0480021411.01.T01:CDS 20.0%
!!! TGAGTAAATGTTTATTTTTG+TGG - Chr4:57637165-57637184 MsG0480021411.01.T01:CDS 20.0%
! AAATGAGTGAATAGAAGAAA+AGG + Chr4:57636628-57636647 None:intergenic 25.0%
! AATACATTCTTCAAAATGGA+TGG + Chr4:57636102-57636121 None:intergenic 25.0%
! CTTGAATACATTCTTCAAAA+TGG + Chr4:57636106-57636125 None:intergenic 25.0%
! TTCTTTATCAGATATGGTTA+CGG - Chr4:57635723-57635742 MsG0480021411.01.T01:CDS 25.0%
! TTGTAAAAACATGTTCACAA+TGG + Chr4:57636414-57636433 None:intergenic 25.0%
!! AATTTTATTGAATCGTCGAT+GGG - Chr4:57636554-57636573 MsG0480021411.01.T01:intron 25.0%
!! CACAGCTTTAATTTAATTTC+AGG - Chr4:57636723-57636742 MsG0480021411.01.T01:intron 25.0%
!! TAATTTTATTGAATCGTCGA+TGG - Chr4:57636553-57636572 MsG0480021411.01.T01:intron 25.0%
!!! AAGTTATTCTGCTTACTTTT+GGG - Chr4:57637202-57637221 MsG0480021411.01.T01:CDS 25.0%
!!! CATTTTGAAGAATGTATTCA+AGG - Chr4:57636104-57636123 MsG0480021411.01.T01:intron 25.0%
!!! TAATTTGATTTTCTCTGAAC+AGG - Chr4:57637403-57637422 MsG0480021411.01.T01:CDS 25.0%
!!! TTTTGATTCTGTAGAAATGT+TGG - Chr4:57636206-57636225 MsG0480021411.01.T01:intron 25.0%
AAGGAGCTTAAGAAAGATAT+TGG - Chr4:57636123-57636142 MsG0480021411.01.T01:intron 30.0%
ATACATACTGTCATTGTGTT+TGG + Chr4:57635647-57635666 None:intergenic 30.0%
GTTCTGATTGTATTCTTCTT+CGG + Chr4:57635578-57635597 None:intergenic 30.0%
TAAATATGTAATCAGCGATG+TGG - Chr4:57637101-57637120 MsG0480021411.01.T01:CDS 30.0%
TACATACTGTCATTGTGTTT+GGG + Chr4:57635646-57635665 None:intergenic 30.0%
TATGTTTGTATATACGTGCA+TGG - Chr4:57636838-57636857 MsG0480021411.01.T01:CDS 30.0%
TCTGTAGAAATGTTGGAAAT+TGG - Chr4:57636213-57636232 MsG0480021411.01.T01:intron 30.0%
TCTTTATCAGATATGGTTAC+GGG - Chr4:57635724-57635743 MsG0480021411.01.T01:CDS 30.0%
TTGCACAATTAAAGCATACA+CGG - Chr4:57636379-57636398 MsG0480021411.01.T01:intron 30.0%
! AAAAGTGTGATTTCCTTGAA+TGG - Chr4:57636310-57636329 MsG0480021411.01.T01:intron 30.0%
! ATGTTTTGCAGAAAATTGAG+AGG + Chr4:57636336-57636355 None:intergenic 30.0%
! CAAGTTATTCTGCTTACTTT+TGG - Chr4:57637201-57637220 MsG0480021411.01.T01:CDS 30.0%
! TACTCCTTTTCATTCTGTTA+AGG - Chr4:57635918-57635937 MsG0480021411.01.T01:intron 30.0%
!! AGAGCATTGAAAATCAAATG+CGG + Chr4:57635892-57635911 None:intergenic 30.0%
!! TTGTAACTAGCTTTCAATTC+AGG - Chr4:57636921-57636940 MsG0480021411.01.T01:CDS 30.0%
!!! TACTTCACTGATTCTGATTT+TGG - Chr4:57636001-57636020 MsG0480021411.01.T01:CDS 30.0%
!!! TTATTTTAGGAACCTTACGA+TGG - Chr4:57636024-57636043 MsG0480021411.01.T01:CDS 30.0%
ACAGCCTTAACAGAATGAAA+AGG + Chr4:57635925-57635944 None:intergenic 35.0%
ACTGTGAAAAGAGGTTTCTT+TGG - Chr4:57637294-57637313 MsG0480021411.01.T01:intron 35.0%
AGAAAATTCGGTACTGTCAT+TGG - Chr4:57637075-57637094 MsG0480021411.01.T01:CDS 35.0%
ATTCACATGCAAATATAGGC+TGG - Chr4:57636967-57636986 MsG0480021411.01.T01:intron 35.0%
CAAACATAATACACCAAGCA+CGG + Chr4:57636889-57636908 None:intergenic 35.0%
CAAATTGAAATCCACAAACC+TGG + Chr4:57635957-57635976 None:intergenic 35.0%
CTGCAAAACATACAGATTTG+AGG - Chr4:57636345-57636364 MsG0480021411.01.T01:intron 35.0%
TAAACTACCTGATATGCTTG+TGG - Chr4:57635753-57635772 MsG0480021411.01.T01:CDS 35.0%
TAAGGTTTGTGAAATTCACC+AGG + Chr4:57635802-57635821 None:intergenic 35.0%
TATTCACTCATTTGTGCAGA+TGG - Chr4:57636635-57636654 MsG0480021411.01.T01:intron 35.0%
TCACGGCAATCTTGAAAAAT+GGG - Chr4:57636161-57636180 MsG0480021411.01.T01:intron 35.0%
TGAAAGCGAAAATCTCATTC+TGG + Chr4:57635849-57635868 None:intergenic 35.0%
TTCACATGCAAATATAGGCT+GGG - Chr4:57636968-57636987 MsG0480021411.01.T01:intron 35.0%
TTTGTGCAGATGGTTTAACA+TGG - Chr4:57636645-57636664 MsG0480021411.01.T01:intron 35.0%
! AGCAAAGTGTCTGTTCTAAA+TGG - Chr4:57636591-57636610 MsG0480021411.01.T01:intron 35.0%
! GAACTTCTAATCAAGAGTGT+TGG - Chr4:57636798-57636817 MsG0480021411.01.T01:intron 35.0%
!! AACTAGCTTTCAATTCAGGT+AGG - Chr4:57636925-57636944 MsG0480021411.01.T01:CDS 35.0%
!! CTCTAAAACTAACCAACTTC+TGG - Chr4:57637431-57637450 MsG0480021411.01.T01:CDS 35.0%
!!! AGCTTTTAGAATGTGATGCT+TGG + Chr4:57637256-57637275 None:intergenic 35.0%
AGCAATGGGGCTTTCATATT+CGG - Chr4:57636056-57636075 MsG0480021411.01.T01:intron 40.0%
AGTCTGCTCAGGAGAAAATT+CGG - Chr4:57637063-57637082 MsG0480021411.01.T01:CDS 40.0%
CTCACGGCAATCTTGAAAAA+TGG - Chr4:57636160-57636179 MsG0480021411.01.T01:intron 40.0%
CTTTCATATTCGGTTCCAGA+GGG - Chr4:57636066-57636085 MsG0480021411.01.T01:intron 40.0%
GAAAATTGAGAGGCCATTCA+AGG + Chr4:57636326-57636345 None:intergenic 40.0%
GCATTGAAAATCAAATGCGG+AGG + Chr4:57635889-57635908 None:intergenic 40.0%
TCTGTTAAGGCTGTGATTCT+TGG - Chr4:57635931-57635950 MsG0480021411.01.T01:CDS 40.0%
TTGAAAATCAAATGCGGAGG+AGG + Chr4:57635886-57635905 None:intergenic 40.0%
! AGTGTCTGTTCTAAATGGAG+AGG - Chr4:57636596-57636615 MsG0480021411.01.T01:intron 40.0%
! GTGTCTGTTCTAAATGGAGA+GGG - Chr4:57636597-57636616 MsG0480021411.01.T01:intron 40.0%
! TGTCTGTTCTAAATGGAGAG+GGG - Chr4:57636598-57636617 MsG0480021411.01.T01:intron 40.0%
!! AACCAACTTCTGGAGCAAAA+GGG - Chr4:57637441-57637460 MsG0480021411.01.T01:CDS 40.0%
!! CAAGAGTGTTGGTGACTTAA+AGG - Chr4:57636809-57636828 MsG0480021411.01.T01:intron 40.0%
!! TAACCAACTTCTGGAGCAAA+AGG - Chr4:57637440-57637459 MsG0480021411.01.T01:CDS 40.0%
!! TTTTCAAGATTGCCGTGAGA+TGG + Chr4:57636159-57636178 None:intergenic 40.0%
AAGATTGCCGTGAGATGGAA+CGG + Chr4:57636154-57636173 None:intergenic 45.0%
ATAATACACCAAGCACGGTG+AGG + Chr4:57636884-57636903 None:intergenic 45.0%
ATATGCTTGTGGAGCAGTCT+TGG - Chr4:57635764-57635783 MsG0480021411.01.T01:intron 45.0%
ATGGCTTCTTCATACTCCGA+GGG - Chr4:57635520-57635539 MsG0480021411.01.T01:CDS 45.0%
ATTTCACAAACCTTACGCCC+CGG - Chr4:57635807-57635826 MsG0480021411.01.T01:intron 45.0%
GATGGAACTTTAACTCCCTC+TGG + Chr4:57636084-57636103 None:intergenic 45.0%
GCTTTCATATTCGGTTCCAG+AGG - Chr4:57636065-57636084 MsG0480021411.01.T01:intron 45.0%
GGTTTCTCTTGGACAATGTG+AGG + Chr4:57635600-57635619 None:intergenic 45.0%
GTATTCTTCTTCGGCAGAGA+GGG + Chr4:57635569-57635588 None:intergenic 45.0%
TAATACACCAAGCACGGTGA+GGG + Chr4:57636883-57636902 None:intergenic 45.0%
TCTTGGTTGGAAGCTTTACC+TGG - Chr4:57635781-57635800 MsG0480021411.01.T01:intron 45.0%
TGTATTCTTCTTCGGCAGAG+AGG + Chr4:57635570-57635589 None:intergenic 45.0%
TTGCTGAATGCTGTTCTCAC+AGG - Chr4:57636754-57636773 MsG0480021411.01.T01:intron 45.0%
! ACCTCTTTTCACAGTCAACG+CGG + Chr4:57637289-57637308 None:intergenic 45.0%
! ACGATCTCTGAGAAGAAGGA+AGG - Chr4:57637017-57637036 MsG0480021411.01.T01:intron 45.0%
! CAAGACGATCTCTGAGAAGA+AGG - Chr4:57637013-57637032 MsG0480021411.01.T01:intron 45.0%
! CGATCTCTGAGAAGAAGGAA+GGG - Chr4:57637018-57637037 MsG0480021411.01.T01:intron 45.0%
! GATCTCTGAGAAGAAGGAAG+GGG - Chr4:57637019-57637038 MsG0480021411.01.T01:intron 45.0%
! GTCTGTTCTAAATGGAGAGG+GGG - Chr4:57636599-57636618 MsG0480021411.01.T01:intron 45.0%
! TCTTGAAAAATGGGCTCTGC+AGG - Chr4:57636170-57636189 MsG0480021411.01.T01:intron 45.0%
!! ACCAACTTCTGGAGCAAAAG+GGG - Chr4:57637442-57637461 MsG0480021411.01.T01:CDS 45.0%
ATGGACCTGGTCAAGCAATG+GGG - Chr4:57636043-57636062 MsG0480021411.01.T01:CDS 50.0%
GACTGCTCCACAAGCATATC+AGG + Chr4:57635763-57635782 None:intergenic 50.0%
GATGGACCTGGTCAAGCAAT+GGG - Chr4:57636042-57636061 MsG0480021411.01.T01:CDS 50.0%
GCAGATTCTGCGGTTTCTCT+TGG + Chr4:57635611-57635630 None:intergenic 50.0%
GGTTGTTCCGTTCCATCTCA+CGG - Chr4:57636144-57636163 MsG0480021411.01.T01:intron 50.0%
GTGATTCTTGGCCAGGTTTG+TGG - Chr4:57635943-57635962 MsG0480021411.01.T01:CDS 50.0%
TAAGGCTGTGATTCTTGGCC+AGG - Chr4:57635936-57635955 MsG0480021411.01.T01:CDS 50.0%
TAGGAACCTTACGATGGACC+TGG - Chr4:57636030-57636049 MsG0480021411.01.T01:CDS 50.0%
TCCGAGGGCTTGAAAACCTA+TGG - Chr4:57635535-57635554 MsG0480021411.01.T01:CDS 50.0%
TGGACGAACATGCAAAGAGC+CGG + Chr4:57635829-57635848 None:intergenic 50.0%
TGTGTTTGGGAAGCCTTTCG+AGG + Chr4:57635633-57635652 None:intergenic 50.0%
! AAGGGGTCGTGTTTCTGATG+TGG - Chr4:57637036-57637055 MsG0480021411.01.T01:intron 50.0%
! AGGGGTCGTGTTTCTGATGT+GGG - Chr4:57637037-57637056 MsG0480021411.01.T01:intron 50.0%
! CTTTTCACAGTCAACGCGGA+GGG + Chr4:57637285-57637304 None:intergenic 50.0%
! TCCCCTTTTGCTCCAGAAGT+TGG + Chr4:57637446-57637465 None:intergenic 50.0%
! TCTTTTCACAGTCAACGCGG+AGG + Chr4:57637286-57637305 None:intergenic 50.0%
!! CTTCTGGAGCAAAAGGGGAT+TGG - Chr4:57637447-57637466 MsG0480021411.01.T01:CDS 50.0%
!! GCCATAGGTTTTCAAGCCCT+CGG + Chr4:57635539-57635558 None:intergenic 50.0%
!! TCCGCGTTGACTGTGAAAAG+AGG - Chr4:57637285-57637304 MsG0480021411.01.T01:intron 50.0%
ACAATGACCCTCACCGTGCT+TGG - Chr4:57636873-57636892 MsG0480021411.01.T01:CDS 55.0%
ACCGCAGAATCTGCCTCGAA+AGG - Chr4:57635617-57635636 MsG0480021411.01.T01:intron 55.0%
AGAGAGGGCAGAGAAGCCAT+AGG + Chr4:57635554-57635573 None:intergenic 55.0%
CGATGGACCTGGTCAAGCAA+TGG - Chr4:57636041-57636060 MsG0480021411.01.T01:CDS 55.0%
GAAAGCCCCATTGCTTGACC+AGG + Chr4:57636051-57636070 None:intergenic 55.0%
GACGAACATGCAAAGAGCCG+GGG + Chr4:57635827-57635846 None:intergenic 55.0%
GCCTTTCGAGGCAGATTCTG+CGG + Chr4:57635621-57635640 None:intergenic 55.0%
GCTTGACCAGGTCCATCGTA+AGG + Chr4:57636039-57636058 None:intergenic 55.0%
GCTTGTGGAGCAGTCTTGGT+TGG - Chr4:57635768-57635787 MsG0480021411.01.T01:intron 55.0%
GGACGAACATGCAAAGAGCC+GGG + Chr4:57635828-57635847 None:intergenic 55.0%
! GGGGTCGTGTTTCTGATGTG+GGG - Chr4:57637038-57637057 MsG0480021411.01.T01:intron 55.0%
!! AGGGGATTGGTCCCATAGAC+TGG - Chr4:57637460-57637479 MsG0480021411.01.T01:CDS 55.0%
ATGCAAAGAGCCGGGGCGTA+AGG + Chr4:57635820-57635839 None:intergenic 60.0%
GATGTGGGGAGAGTCTGCTC+AGG - Chr4:57637052-57637071 MsG0480021411.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 57635520 57637491 57635520 ID=MsG0480021411.01;Name=MsG0480021411.01
Chr4 mRNA 57635520 57637491 57635520 ID=MsG0480021411.01.T01;Parent=MsG0480021411.01;Name=MsG0480021411.01.T01;_AED=0.19;_eAED=0.19;_QI=0|0|0|1|1|1|7|0|281
Chr4 exon 57637353 57637491 57637353 ID=MsG0480021411.01.T01:exon:19359;Parent=MsG0480021411.01.T01
Chr4 exon 57637054 57637277 57637054 ID=MsG0480021411.01.T01:exon:19358;Parent=MsG0480021411.01.T01
Chr4 exon 57636820 57636978 57636820 ID=MsG0480021411.01.T01:exon:19357;Parent=MsG0480021411.01.T01
Chr4 exon 57636236 57636266 57636236 ID=MsG0480021411.01.T01:exon:19356;Parent=MsG0480021411.01.T01
Chr4 exon 57635927 57636068 57635927 ID=MsG0480021411.01.T01:exon:19355;Parent=MsG0480021411.01.T01
Chr4 exon 57635689 57635772 57635689 ID=MsG0480021411.01.T01:exon:19354;Parent=MsG0480021411.01.T01
Chr4 exon 57635520 57635586 57635520 ID=MsG0480021411.01.T01:exon:19353;Parent=MsG0480021411.01.T01
Chr4 CDS 57637353 57637491 57637353 ID=MsG0480021411.01.T01:cds;Parent=MsG0480021411.01.T01
Chr4 CDS 57637054 57637277 57637054 ID=MsG0480021411.01.T01:cds;Parent=MsG0480021411.01.T01
Chr4 CDS 57636820 57636978 57636820 ID=MsG0480021411.01.T01:cds;Parent=MsG0480021411.01.T01
Chr4 CDS 57636236 57636266 57636236 ID=MsG0480021411.01.T01:cds;Parent=MsG0480021411.01.T01
Chr4 CDS 57635927 57636068 57635927 ID=MsG0480021411.01.T01:cds;Parent=MsG0480021411.01.T01
Chr4 CDS 57635689 57635772 57635689 ID=MsG0480021411.01.T01:cds;Parent=MsG0480021411.01.T01
Chr4 CDS 57635520 57635586 57635520 ID=MsG0480021411.01.T01:cds;Parent=MsG0480021411.01.T01
Gene Sequence

>MsG0480021411.01.T01

ATGGCTTCTTCATACTCCGAGGGCTTGAAAACCTATGGCTTCTCTGCCCTCTCTGCCGAAGAAGAATACAATCAGAACCTCACATTGTCCAAGAGAAACCGCAGAATCTGCCTCGAAAGGCTTCCCAAACACAATGACAATATGGTTACGGGTCGCATTAAACTACCTGATATGCTTGTGGAGCAGTCTTGGTTGGAAGCTTTACCTGGTGAATTTCACAAACCTTACGCCCCGGCTCTTTGCATGTTCGTCCAGAATGAGATTTTCGCTTTCAAAGATTCTGTATATCCTCCTCCGCATTTGATTTTCAATGCTCTTAATACTACTCCTTTTCATTCTGTTAAGGCTGTGATTCTTGGCCAGGAACCTTACGATGGACCTGGTCAAGCAATGGGGCTTTCATATTCGGTTCCAGAGGGAGTTAAAGTTCCATCCATTTTGAAGAATGTATTCAAGGAGCTTAAGAAAGATATTGGTTGTTCCGTTCCATCTCACGGCAATCTTGAAAAATGGGCTCTGCAGGGCGTTCTCTTGCTGAATGCTGTTCTCACAGGTAGGAAGAATGAAGATAATTTAAATTCACATGCAAATATAGGCTGGGAACATTTTACAGATGTTGTTATCAAGACGATCTCTGAGAAGAAGGAAGGGGTCGTGTTTCTGATGTGGGGAGAGTCTGCTCAGGAGAAAATTCGCTTAATTGATCAAACCAAGCATCACATTCTAAAAGCTGAGCATCCCTCCGCGTTGACTGTGAAAAGAGGTTTCTTTGGCTGCAAGCACTTCTCTAAAACTAACCAACTTCTGGAGCAAAAGGGGATTGGTCCCATAGACTGGCAACTATAA
Protein sequence

>MsG0480021411.01.T01

MASSYSEGLKTYGFSALSAEEEYNQNLTLSKRNRRICLERLPKHNDNMVTGRIKLPDMLVEQSWLEALPGEFHKPYAPALCMFVQNEIFAFKDSVYPPPHLIFNALNTTPFHSVKAVILGQEPYDGPGQAMGLSYSVPEGVKVPSILKNVFKELKKDIGCSVPSHGNLEKWALQGVLLLNAVLTGRKNEDNLNSHANIGWEHFTDVVIKTISEKKEGVVFLMWGESAQEKIRLIDQTKHHILKAEHPSALTVKRGFFGCKHFSKTNQLLEQKGIGPIDWQL*