AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021414.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021414.01.T01 MTR_4g074280 89.753 283 27 1 1 283 1 281 0.0 503
MsG0480021414.01.T01 MTR_4g074300 81.004 279 44 2 12 283 6 282 1.55e-166 463
MsG0480021414.01.T01 MTR_4g074330 60.751 293 98 5 2 283 16 302 8.29e-121 348
MsG0480021414.01.T01 MTR_4g077140 78.723 94 19 1 185 277 9 102 1.86e-46 152
MsG0480021414.01.T01 MTR_3g063510 91.228 57 5 0 65 121 5 61 1.01e-33 118
MsG0480021414.01.T01 MTR_4g074270 57.353 68 11 2 58 121 1 54 2.11e-14 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021414.01.T01 AT3G18630 59.690 258 96 4 28 283 79 330 1.88e-106 312

Find 74 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTAAAATTTCCAATCTA+TGG 0.187462 4:+57651666 None:intergenic
CTTAAGTAGATTCTTCAAAA+TGG 0.273854 4:+57653376 None:intergenic
GCTTGACCAGGTCCAGAATA+AGG 0.283982 4:+57653449 None:intergenic
AACCAACTTCTGGAGCAAAA+TGG 0.285038 4:-57651697 MsG0480021414.01.T01:CDS
AAGGAGGTTAAGAAAGATAT+TGG 0.290774 4:-57653356 MsG0480021414.01.T01:CDS
CAAGACGATCTCAGAGAAAA+AGG 0.290873 4:-57652578 MsG0480021414.01.T01:CDS
ATACATACTGTCATTGAGTT+TGG 0.291970 4:+57653841 None:intergenic
CTCTAAAACTAACCAACTTC+TGG 0.301966 4:-57651707 MsG0480021414.01.T01:CDS
CAAGTCCTTGGAAGCATGAT+TGG 0.303955 4:+57653940 None:intergenic
ACTGTGAAAGGAGGTTTCTT+TGG 0.311335 4:-57652349 MsG0480021414.01.T01:CDS
CTTGGAAGCATGATTGGGTT+TGG 0.346810 4:+57653946 None:intergenic
GATTGTTCCACAAGCATATC+AGG 0.358210 4:+57653727 None:intergenic
TACATACTGTCATTGAGTTT+GGG 0.389629 4:+57653842 None:intergenic
TTTATCAGATTCTTTAGCTA+CGG 0.412813 4:-57653764 MsG0480021414.01.T01:intron
TCTGGACCTGGTCAAGCAAT+GGG 0.414240 4:-57653443 MsG0480021414.01.T01:CDS
ATGGGATTGGTCCCATAGAT+TGG 0.422643 4:-57651678 MsG0480021414.01.T01:CDS
ACCAACTTCTGGAGCAAAAT+GGG 0.423051 4:-57651696 MsG0480021414.01.T01:CDS
TCTGTTAAGGCTGTGATCCT+TGG 0.426938 4:-57653556 MsG0480021414.01.T01:CDS
GGAGAGGGTGGAGGAGCCTT+CGG 0.434104 4:+57653913 None:intergenic
ATATGCTTGTGGAACAATCT+TGG 0.435091 4:-57653723 MsG0480021414.01.T01:CDS
GCTATCATTCGCGGTTCCTC+AGG 0.452538 4:-57653420 MsG0480021414.01.T01:CDS
GCCTTTCGCGGCAGATTTCG+CGG 0.453227 4:+57653867 None:intergenic
CCTTTCACAGTAGCTCTAGA+AGG 0.455048 4:+57652361 None:intergenic
TTATCAGATTCTTTAGCTAC+GGG 0.458597 4:-57653763 MsG0480021414.01.T01:intron
CGATTTGTCTGCAGCGGAGA+GGG 0.459006 4:+57653898 None:intergenic
ACGCACATGCAAACATAGGC+TGG 0.462917 4:-57652624 MsG0480021414.01.T01:CDS
AAGTCCTTGGAAGCATGATT+GGG 0.467495 4:+57653941 None:intergenic
TTGCTGAATGCTGTTCTCAC+AGG 0.467980 4:-57652829 MsG0480021414.01.T01:intron
AATTAAAATTTCCAATCTAT+GGG 0.471489 4:+57651667 None:intergenic
TAAGGCTGTGATCCTTGGAC+AGG 0.472496 4:-57653551 MsG0480021414.01.T01:intron
AGGAGTTGTGTTTCTGCTGT+GGG 0.480390 4:-57652554 MsG0480021414.01.T01:CDS
AGTATGCTCAGGAGAAAATT+CGG 0.480436 4:-57652528 MsG0480021414.01.T01:intron
AGTAGATTCTTCAAAATGGA+TGG 0.480763 4:+57653380 None:intergenic
ATTCGCGGTTCCTCAGGCTC+GGG 0.482238 4:-57653414 MsG0480021414.01.T01:CDS
TTCTGGACCTGGTCAAGCAA+TGG 0.487661 4:-57653444 MsG0480021414.01.T01:CDS
CATTCGCGGTTCCTCAGGCT+CGG 0.490087 4:-57653415 MsG0480021414.01.T01:CDS
AGCTTTCAGAATATGATGCT+TGG 0.492764 4:+57652390 None:intergenic
ATGCAAAGAGCAGGGGCGTA+AGG 0.493873 4:+57653670 None:intergenic
TAAGGTTTCTGAAACTCATC+AGG 0.496686 4:+57653688 None:intergenic
TCGAAAATCAAATGCGGAGG+AGG 0.500842 4:+57653604 None:intergenic
GGTTGTAAGCTTCCATCTCA+TGG 0.505673 4:-57653335 MsG0480021414.01.T01:CDS
GTCTGCAGCGGAGAGGGTGG+AGG 0.507144 4:+57653904 None:intergenic
CCGACGAACATGCAAAGAGC+AGG 0.517254 4:+57653661 None:intergenic
CAAACCCAATCATGCTTCCA+AGG 0.538573 4:-57653945 MsG0480021414.01.T01:CDS
TTTGAAGAATCTACTTAAGG+AGG 0.539710 4:-57653372 MsG0480021414.01.T01:CDS
GCTTGTGGAACAATCTTGGT+TGG 0.540250 4:-57653719 MsG0480021414.01.T01:CDS
CTTCTGGAGCAAAATGGGAT+TGG 0.540956 4:-57651691 MsG0480021414.01.T01:CDS
ACCGCGAAATCTGCCGCGAA+AGG 0.546132 4:-57653868 MsG0480021414.01.T01:CDS
TGAGTTTGGGAAGCCTTTCG+CGG 0.550574 4:+57653855 None:intergenic
CCTTCTAGAGCTACTGTGAA+AGG 0.551319 4:-57652361 MsG0480021414.01.T01:CDS
CCTGCTCTTTGCATGTTCGT+CGG 0.551374 4:-57653661 MsG0480021414.01.T01:CDS
TAGGAACCTTATTCTGGACC+TGG 0.552507 4:-57653455 MsG0480021414.01.T01:CDS
AGCAATGGGGCTATCATTCG+CGG 0.554899 4:-57653429 MsG0480021414.01.T01:CDS
ACAGCCTTAACAGAATGAAA+AGG 0.557732 4:+57653565 None:intergenic
GCAAACGCACATGCAAACAT+AGG 0.559870 4:-57652628 MsG0480021414.01.T01:CDS
TAAACTACCTGATATGCTTG+TGG 0.569391 4:-57653734 MsG0480021414.01.T01:CDS
CGCACATGCAAACATAGGCT+GGG 0.570014 4:-57652623 MsG0480021414.01.T01:CDS
TTCGCGGTTCCTCAGGCTCG+GGG 0.577978 4:-57653413 MsG0480021414.01.T01:CDS
TCCAAGGACTTGAAAACCGA+AGG 0.582664 4:-57653929 MsG0480021414.01.T01:CDS
TTTGTCTGCAGCGGAGAGGG+TGG 0.586236 4:+57653901 None:intergenic
AAGGAGTTGTGTTTCTGCTG+TGG 0.588101 4:-57652555 MsG0480021414.01.T01:CDS
TCGATTTGTCTGCAGCGGAG+AGG 0.595460 4:+57653897 None:intergenic
TCTCTTCGATTTGTCTGCAG+CGG 0.603443 4:+57653892 None:intergenic
GATAGCCCCATTGCTTGACC+AGG 0.603480 4:+57653437 None:intergenic
CGACGAACATGCAAAGAGCA+GGG 0.604175 4:+57653662 None:intergenic
AATCTGACTCCCCGAGCCTG+AGG 0.607202 4:+57653404 None:intergenic
GAAATCCACAAACCTGTCCA+AGG 0.608302 4:+57653539 None:intergenic
GCTGTGGGGAGAGTATGCTC+AGG 0.618401 4:-57652539 MsG0480021414.01.T01:CDS
GACGAACATGCAAAGAGCAG+GGG 0.641386 4:+57653663 None:intergenic
GGAGTTGTGTTTCTGCTGTG+GGG 0.643590 4:-57652553 MsG0480021414.01.T01:CDS
GCATCGAAAATCAAATGCGG+AGG 0.645170 4:+57653601 None:intergenic
TCTAGAGCTACTGTGAAAGG+AGG 0.663588 4:-57652358 MsG0480021414.01.T01:CDS
CTGGACCTGGTCAAGCAATG+GGG 0.690829 4:-57653442 MsG0480021414.01.T01:CDS
AAAGCATCGAAAATCAAATG+CGG 0.706905 4:+57653598 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAACTTTAACTTAATTTTA+GGG - Chr4:57652772-57652791 MsG0480021414.01.T01:intron 10.0%
!! AAATTTATAGAATCAACTAA+TGG + Chr4:57653134-57653153 None:intergenic 15.0%
!! GCTTAATGTATATATAAAAT+AGG - Chr4:57653380-57653399 MsG0480021414.01.T01:CDS 15.0%
!! TACAATCTTAAATTACATAT+TGG + Chr4:57652604-57652623 None:intergenic 15.0%
!! TATAGAATCAAAATAATCAA+TGG + Chr4:57652351-57652370 None:intergenic 15.0%
!! TCTATAGAAATATTAGAAAT+TGG - Chr4:57652365-57652384 MsG0480021414.01.T01:CDS 15.0%
!!! ATTAGTTGATTCTATAAATT+TGG - Chr4:57653133-57653152 MsG0480021414.01.T01:intron 15.0%
!!! ATTTTTATTTTGGTTTTTCT+AGG - Chr4:57652157-57652176 MsG0480021414.01.T01:intron 15.0%
!!! CAAAACTTTAACTTAATTTT+AGG - Chr4:57652771-57652790 MsG0480021414.01.T01:intron 15.0%
!!! CATTTTAGTATATTTTGTTA+TGG + Chr4:57652514-57652533 None:intergenic 15.0%
!!! CTAAAATTAAGTTAAAGTTT+TGG + Chr4:57652773-57652792 None:intergenic 15.0%
!!! TATTTTAAGAATGAAATGTT+TGG + Chr4:57652429-57652448 None:intergenic 15.0%
!! ATACTTAGCTATAATATAAC+AGG - Chr4:57651820-57651839 MsG0480021414.01.T01:intron 20.0%
!! TGATAAAATTAAAACTGATC+AGG + Chr4:57653840-57653859 None:intergenic 20.0%
!! TTAAGTTTGTCTGAAAATAA+GGG - Chr4:57653418-57653437 MsG0480021414.01.T01:CDS 20.0%
!!! TACTTCACTGATTTTTATTT+TGG - Chr4:57652147-57652166 MsG0480021414.01.T01:intron 20.0%
! AAAAGAGTGATTTCTTTGAA+TGG - Chr4:57652462-57652481 MsG0480021414.01.T01:intron 25.0%
! CAAACATAATACACCAAATA+TGG + Chr4:57652929-57652948 None:intergenic 25.0%
! CAAGTTATTCTTCTTACTTT+GGG - Chr4:57653190-57653209 MsG0480021414.01.T01:intron 25.0%
! CTTAAGTAGATTCTTCAAAA+TGG + Chr4:57652258-57652277 None:intergenic 25.0%
! CTTAAGTTTGTCTGAAAATA+AGG - Chr4:57653417-57653436 MsG0480021414.01.T01:CDS 25.0%
! CTTGTTTACAAAAAATTGAG+AGG + Chr4:57652488-57652507 None:intergenic 25.0%
! TATAACTAGTTCATGTGATA+TGG - Chr4:57653632-57653651 MsG0480021414.01.T01:CDS 25.0%
! TTTATCAGATTCTTTAGCTA+CGG - Chr4:57651867-57651886 MsG0480021414.01.T01:intron 25.0%
!! TTTTGGTCAGAGAATATTTT+TGG + Chr4:57652756-57652775 None:intergenic 25.0%
!!! AATTGTTTATTTTAGCGGAA+TGG - Chr4:57653159-57653178 MsG0480021414.01.T01:intron 25.0%
!!! ATTGTTTATTTTAGCGGAAT+GGG - Chr4:57653160-57653179 MsG0480021414.01.T01:intron 25.0%
!!! CATTTTGAAGAATCTACTTA+AGG - Chr4:57652256-57652275 MsG0480021414.01.T01:intron 25.0%
AAAATTACCCTCACCATATT+TGG - Chr4:57652913-57652932 MsG0480021414.01.T01:intron 30.0%
AAGGAGGTTAAGAAAGATAT+TGG - Chr4:57652275-57652294 MsG0480021414.01.T01:intron 30.0%
AAGGTTCAAAATCTAGAAGT+TGG - Chr4:57653571-57653590 MsG0480021414.01.T01:CDS 30.0%
AGGTTCAAAATCTAGAAGTT+GGG - Chr4:57653572-57653591 MsG0480021414.01.T01:CDS 30.0%
AGTAGATTCTTCAAAATGGA+TGG + Chr4:57652254-57652273 None:intergenic 30.0%
ATAATACACCAAATATGGTG+AGG + Chr4:57652924-57652943 None:intergenic 30.0%
ATACATACTGTCATTGAGTT+TGG + Chr4:57651793-57651812 None:intergenic 30.0%
CAAAATAACCATAGAAACAG+CGG - Chr4:57652575-57652594 MsG0480021414.01.T01:CDS 30.0%
CTTAGATAAATGCAGAAAGA+AGG + Chr4:57653514-57653533 None:intergenic 30.0%
GCAAGTTATTCTTCTTACTT+TGG - Chr4:57653189-57653208 MsG0480021414.01.T01:intron 30.0%
GCTACAACAAGAATTATCTT+GGG + Chr4:57653547-57653566 None:intergenic 30.0%
TAATACACCAAATATGGTGA+GGG + Chr4:57652923-57652942 None:intergenic 30.0%
TACATACTGTCATTGAGTTT+GGG + Chr4:57651792-57651811 None:intergenic 30.0%
TCATGGCAATCTTGAAAAAT+GGG - Chr4:57652313-57652332 MsG0480021414.01.T01:intron 30.0%
TTATCAGATTCTTTAGCTAC+GGG - Chr4:57651868-57651887 MsG0480021414.01.T01:intron 30.0%
TTTGAAGAATCTACTTAAGG+AGG - Chr4:57652259-57652278 MsG0480021414.01.T01:intron 30.0%
! TACTCCTTTTCATTCTGTTA+AGG - Chr4:57652062-57652081 MsG0480021414.01.T01:intron 30.0%
! TTCTAGATTTTGAACCTTTC+AGG + Chr4:57653569-57653588 None:intergenic 30.0%
!! AAAGCATCGAAAATCAAATG+CGG + Chr4:57652036-57652055 None:intergenic 30.0%
!! TTGTAACTAGCTTTCAATTC+AGG - Chr4:57652961-57652980 MsG0480021414.01.T01:intron 30.0%
!! TTGTTTGATTTTCTCTGAAC+AGG - Chr4:57653896-57653915 MsG0480021414.01.T01:CDS 30.0%
!! TTTTTCTAGGAACCTTATTC+TGG - Chr4:57652170-57652189 MsG0480021414.01.T01:intron 30.0%
!!! GGCGTAATTGTTTATTTTAG+CGG - Chr4:57653154-57653173 MsG0480021414.01.T01:intron 30.0%
ACAGCCTTAACAGAATGAAA+AGG + Chr4:57652069-57652088 None:intergenic 35.0%
AGCTTTCAGAATATGATGCT+TGG + Chr4:57653244-57653263 None:intergenic 35.0%
AGTATGCTCAGGAGAAAATT+CGG - Chr4:57653103-57653122 MsG0480021414.01.T01:intron 35.0%
ATATGCTTGTGGAACAATCT+TGG - Chr4:57651908-57651927 MsG0480021414.01.T01:intron 35.0%
CTCATGGCAATCTTGAAAAA+TGG - Chr4:57652312-57652331 MsG0480021414.01.T01:intron 35.0%
CTTAGGCTTCTTATGAAGTT+AGG - Chr4:57652649-57652668 MsG0480021414.01.T01:CDS 35.0%
GGCTACAACAAGAATTATCT+TGG + Chr4:57653548-57653567 None:intergenic 35.0%
TAAAATAGGCATTCATGACG+AGG - Chr4:57653394-57653413 MsG0480021414.01.T01:CDS 35.0%
TAAACTACCTGATATGCTTG+TGG - Chr4:57651897-57651916 MsG0480021414.01.T01:intron 35.0%
TTCATAAGAAGCCTAAGTGA+CGG + Chr4:57652646-57652665 None:intergenic 35.0%
! AATTCTTGTTGTAGCCTGAA+AGG - Chr4:57653552-57653571 MsG0480021414.01.T01:CDS 35.0%
! GAACTTCTAATCAAGAGTGT+TGG - Chr4:57652846-57652865 MsG0480021414.01.T01:intron 35.0%
! GTTTTTATTGACCGTCACTT+AGG - Chr4:57652632-57652651 MsG0480021414.01.T01:CDS 35.0%
!! AACTAGCTTTCAATTCAGGT+AGG - Chr4:57652965-57652984 MsG0480021414.01.T01:intron 35.0%
!! CTCTAAAACTAACCAACTTC+TGG - Chr4:57653924-57653943 MsG0480021414.01.T01:CDS 35.0%
!! TAAGGTTTCTGAAACTCATC+AGG + Chr4:57651946-57651965 None:intergenic 35.0%
!! TTTTCAAGATTGCCATGAGA+TGG + Chr4:57652311-57652330 None:intergenic 35.0%
ACGATCTCAGAGAAAAAGGA+AGG - Chr4:57653057-57653076 MsG0480021414.01.T01:intron 40.0%
ACTGTGAAAGGAGGTTTCTT+TGG - Chr4:57653282-57653301 MsG0480021414.01.T01:intron 40.0%
CAAGACGATCTCAGAGAAAA+AGG - Chr4:57653053-57653072 MsG0480021414.01.T01:intron 40.0%
GATTGTTCCACAAGCATATC+AGG + Chr4:57651907-57651926 None:intergenic 40.0%
GGTCATGATATGTTTGTGCA+TGG - Chr4:57652878-57652897 MsG0480021414.01.T01:intron 40.0%
TCAGATTTGTGAACGCATTG+TGG - Chr4:57652541-57652560 MsG0480021414.01.T01:CDS 40.0%
! AAGTCCTTGGAAGCATGATT+GGG + Chr4:57651693-57651712 None:intergenic 40.0%
! ATCGTCTGTTCTAAACACAG+AGG - Chr4:57652674-57652693 MsG0480021414.01.T01:intron 40.0%
! TCGTCTGTTCTAAACACAGA+GGG - Chr4:57652675-57652694 MsG0480021414.01.T01:intron 40.0%
!! AACCAACTTCTGGAGCAAAA+TGG - Chr4:57653934-57653953 MsG0480021414.01.T01:CDS 40.0%
!! ACCAACTTCTGGAGCAAAAT+GGG - Chr4:57653935-57653954 MsG0480021414.01.T01:CDS 40.0%
!! CAAGAGTGTTGGTGACTTAA+AGG - Chr4:57652857-57652876 MsG0480021414.01.T01:intron 40.0%
ATCTAGAAGTTGGGTCTGCT+TGG - Chr4:57653581-57653600 MsG0480021414.01.T01:CDS 45.0%
CAAACCCAATCATGCTTCCA+AGG - Chr4:57651686-57651705 MsG0480021414.01.T01:CDS 45.0%
GAAATCCACAAACCTGTCCA+AGG + Chr4:57652095-57652114 None:intergenic 45.0%
GCAAACGCACATGCAAACAT+AGG - Chr4:57653003-57653022 MsG0480021414.01.T01:intron 45.0%
GCATCGAAAATCAAATGCGG+AGG + Chr4:57652033-57652052 None:intergenic 45.0%
GCTTGTGGAACAATCTTGGT+TGG - Chr4:57651912-57651931 MsG0480021414.01.T01:intron 45.0%
GGTTGTAAGCTTCCATCTCA+TGG - Chr4:57652296-57652315 MsG0480021414.01.T01:intron 45.0%
TAGGAACCTTATTCTGGACC+TGG - Chr4:57652176-57652195 MsG0480021414.01.T01:intron 45.0%
TCCAAGGACTTGAAAACCGA+AGG - Chr4:57651702-57651721 MsG0480021414.01.T01:CDS 45.0%
TCGAAAATCAAATGCGGAGG+AGG + Chr4:57652030-57652049 None:intergenic 45.0%
TCTGTTAAGGCTGTGATCCT+TGG - Chr4:57652075-57652094 MsG0480021414.01.T01:intron 45.0%
TTGCTGAATGCTGTTCTCAC+AGG - Chr4:57652802-57652821 MsG0480021414.01.T01:intron 45.0%
! AAGGAGTTGTGTTTCTGCTG+TGG - Chr4:57653076-57653095 MsG0480021414.01.T01:intron 45.0%
! AGGAGTTGTGTTTCTGCTGT+GGG - Chr4:57653077-57653096 MsG0480021414.01.T01:intron 45.0%
! CAAGTCCTTGGAAGCATGAT+TGG + Chr4:57651694-57651713 None:intergenic 45.0%
! CGTCTGTTCTAAACACAGAG+GGG - Chr4:57652676-57652695 MsG0480021414.01.T01:intron 45.0%
! CTTGGAAGCATGATTGGGTT+TGG + Chr4:57651688-57651707 None:intergenic 45.0%
! GTCTGTTCTAAACACAGAGG+GGG - Chr4:57652677-57652696 MsG0480021414.01.T01:intron 45.0%
! TCCCATTTTGCTCCAGAAGT+TGG + Chr4:57653939-57653958 None:intergenic 45.0%
! TCTAGAGCTACTGTGAAAGG+AGG - Chr4:57653273-57653292 MsG0480021414.01.T01:intron 45.0%
! TCTCTTCGATTTGTCTGCAG+CGG + Chr4:57651742-57651761 None:intergenic 45.0%
! TCTTGAAAAATGGGCTCTGC+AGG - Chr4:57652322-57652341 MsG0480021414.01.T01:intron 45.0%
!! ATGGGATTGGTCCCATAGAT+TGG - Chr4:57653953-57653972 MsG0480021414.01.T01:CDS 45.0%
!! ATTGGTCACCGCTGTTTCTA+TGG + Chr4:57652586-57652605 None:intergenic 45.0%
!! CCTTCTAGAGCTACTGTGAA+AGG - Chr4:57653270-57653289 MsG0480021414.01.T01:intron 45.0%
!! CCTTTCACAGTAGCTCTAGA+AGG + Chr4:57653273-57653292 None:intergenic 45.0%
!! CTTCTGGAGCAAAATGGGAT+TGG - Chr4:57653940-57653959 MsG0480021414.01.T01:CDS 45.0%
ACGCACATGCAAACATAGGC+TGG - Chr4:57653007-57653026 MsG0480021414.01.T01:intron 50.0%
AGCAATGGGGCTATCATTCG+CGG - Chr4:57652202-57652221 MsG0480021414.01.T01:intron 50.0%
CCTGCTCTTTGCATGTTCGT+CGG - Chr4:57651970-57651989 MsG0480021414.01.T01:intron 50.0%
CGACGAACATGCAAAGAGCA+GGG + Chr4:57651972-57651991 None:intergenic 50.0%
CGCACATGCAAACATAGGCT+GGG - Chr4:57653008-57653027 MsG0480021414.01.T01:intron 50.0%
GACGAACATGCAAAGAGCAG+GGG + Chr4:57651971-57651990 None:intergenic 50.0%
GCTTGACCAGGTCCAGAATA+AGG + Chr4:57652185-57652204 None:intergenic 50.0%
GTGATCCTTGGACAGGTTTG+TGG - Chr4:57652087-57652106 MsG0480021414.01.T01:intron 50.0%
TAAGGCTGTGATCCTTGGAC+AGG - Chr4:57652080-57652099 MsG0480021414.01.T01:intron 50.0%
TCTGGACCTGGTCAAGCAAT+GGG - Chr4:57652188-57652207 MsG0480021414.01.T01:intron 50.0%
TGAGTTTGGGAAGCCTTTCG+CGG + Chr4:57651779-57651798 None:intergenic 50.0%
TTCTGGACCTGGTCAAGCAA+TGG - Chr4:57652187-57652206 MsG0480021414.01.T01:intron 50.0%
! GGAGTTGTGTTTCTGCTGTG+GGG - Chr4:57653078-57653097 MsG0480021414.01.T01:intron 50.0%
!!! GCCTTCGGTTTTCAAGTCCT+TGG + Chr4:57651706-57651725 None:intergenic 50.0%
CCGACGAACATGCAAAGAGC+AGG + Chr4:57651973-57651992 None:intergenic 55.0%
CGATTTGTCTGCAGCGGAGA+GGG + Chr4:57651736-57651755 None:intergenic 55.0%
CTGGACCTGGTCAAGCAATG+GGG - Chr4:57652189-57652208 MsG0480021414.01.T01:intron 55.0%
GATAGCCCCATTGCTTGACC+AGG + Chr4:57652197-57652216 None:intergenic 55.0%
GCTATCATTCGCGGTTCCTC+AGG - Chr4:57652211-57652230 MsG0480021414.01.T01:intron 55.0%
! ATGCAAAGAGCAGGGGCGTA+AGG + Chr4:57651964-57651983 None:intergenic 55.0%
! TCGATTTGTCTGCAGCGGAG+AGG + Chr4:57651737-57651756 None:intergenic 55.0%
AATCTGACTCCCCGAGCCTG+AGG + Chr4:57652230-57652249 None:intergenic 60.0%
ACCGCGAAATCTGCCGCGAA+AGG - Chr4:57651763-57651782 MsG0480021414.01.T01:intron 60.0%
ATTCGCGGTTCCTCAGGCTC+GGG - Chr4:57652217-57652236 MsG0480021414.01.T01:intron 60.0%
CATTCGCGGTTCCTCAGGCT+CGG - Chr4:57652216-57652235 MsG0480021414.01.T01:intron 60.0%
GCCTTTCGCGGCAGATTTCG+CGG + Chr4:57651767-57651786 None:intergenic 60.0%
TTTGTCTGCAGCGGAGAGGG+TGG + Chr4:57651733-57651752 None:intergenic 60.0%
! GCTGTGGGGAGAGTATGCTC+AGG - Chr4:57653092-57653111 MsG0480021414.01.T01:intron 60.0%
GGAGAGGGTGGAGGAGCCTT+CGG + Chr4:57651721-57651740 None:intergenic 65.0%
TTCGCGGTTCCTCAGGCTCG+GGG - Chr4:57652218-57652237 MsG0480021414.01.T01:intron 65.0%
GTCTGCAGCGGAGAGGGTGG+AGG + Chr4:57651730-57651749 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 57651669 57653984 57651669 ID=MsG0480021414.01;Name=MsG0480021414.01
Chr4 mRNA 57651669 57653984 57651669 ID=MsG0480021414.01.T01;Parent=MsG0480021414.01;Name=MsG0480021414.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|7|0|283
Chr4 exon 57653849 57653984 57653849 ID=MsG0480021414.01.T01:exon:19367;Parent=MsG0480021414.01.T01
Chr4 exon 57653552 57653778 57653552 ID=MsG0480021414.01.T01:exon:19366;Parent=MsG0480021414.01.T01
Chr4 exon 57653310 57653474 57653310 ID=MsG0480021414.01.T01:exon:19365;Parent=MsG0480021414.01.T01
Chr4 exon 57652830 57652860 57652830 ID=MsG0480021414.01.T01:exon:19364;Parent=MsG0480021414.01.T01
Chr4 exon 57652529 57652670 57652529 ID=MsG0480021414.01.T01:exon:19363;Parent=MsG0480021414.01.T01
Chr4 exon 57652343 57652426 57652343 ID=MsG0480021414.01.T01:exon:19362;Parent=MsG0480021414.01.T01
Chr4 exon 57651669 57651735 57651669 ID=MsG0480021414.01.T01:exon:19361;Parent=MsG0480021414.01.T01
Chr4 CDS 57653849 57653984 57653849 ID=MsG0480021414.01.T01:cds;Parent=MsG0480021414.01.T01
Chr4 CDS 57653552 57653778 57653552 ID=MsG0480021414.01.T01:cds;Parent=MsG0480021414.01.T01
Chr4 CDS 57653310 57653474 57653310 ID=MsG0480021414.01.T01:cds;Parent=MsG0480021414.01.T01
Chr4 CDS 57652830 57652860 57652830 ID=MsG0480021414.01.T01:cds;Parent=MsG0480021414.01.T01
Chr4 CDS 57652529 57652670 57652529 ID=MsG0480021414.01.T01:cds;Parent=MsG0480021414.01.T01
Chr4 CDS 57652343 57652426 57652343 ID=MsG0480021414.01.T01:cds;Parent=MsG0480021414.01.T01
Chr4 CDS 57651669 57651735 57651669 ID=MsG0480021414.01.T01:cds;Parent=MsG0480021414.01.T01
Gene Sequence

>MsG0480021414.01.T01

ATGGCTTCTTCATCTTCCAAACCCAATCATGCTTCCAAGGACTTGAAAACCGAAGGCTCCTCCACCCTCTCCGCTGCAGACAAATCGAAGAGAAACCGCGAAATCTGCCGCGAAAGGCTTCCCAAACTCAATGACAATTCTTTAGCTACGGGTCGCATTAAACTACCTGATATGCTTGTGGAACAATCTTGGTTGGAAGCTTTACCTGATGAGTTTCAGAAACCTTACGCCCCTGCTCTTTGCATGTTCGTCGGAAATGAGTATTTTGCTTTCAAAGATTCTGTGTATCCTCCTCCGCATTTGATTTTCGATGCTTTTAACACTACTCCTTTTCATTCTGTTAAGGCTGTGATCCTTGGACAGGAACCTTATTCTGGACCTGGTCAAGCAATGGGGCTATCATTCGCGGTTCCTCAGGCTCGGGGAGTCAGATTTCCATCCATTTTGAAGAATCTACTTAAGGAGGTTAAGAAAGATATTGGTTGTAAGCTTCCATCTCATGGCAATCTTGAAAAATGGGCTCTGCAGGGCGTTCTCTTGCTGAATGCTGTTCTCACAGGTAGGATAAATGAAAATAATGCAAACGCACATGCAAACATAGGCTGGGAACAATTTACGAATGCTGTTATCAAGACGATCTCAGAGAAAAAGGAAGGAGTTGTGTTTCTGCTGTGGGGAGAGTATGCTCAGGAGAAAATTCGCTTAATTGATCAAACCAAGCATCATATTCTGAAAGCTGAACATCCTTCTAGAGCTACTGTGAAAGGAGGTTTCTTTGGCTGCAAGCACTTCTCTAAAACTAACCAACTTCTGGAGCAAAATGGGATTGGTCCCATAGATTGGAAATTTTAA
Protein sequence

>MsG0480021414.01.T01

MASSSSKPNHASKDLKTEGSSTLSAADKSKRNREICRERLPKLNDNSLATGRIKLPDMLVEQSWLEALPDEFQKPYAPALCMFVGNEYFAFKDSVYPPPHLIFDAFNTTPFHSVKAVILGQEPYSGPGQAMGLSFAVPQARGVRFPSILKNLLKEVKKDIGCKLPSHGNLEKWALQGVLLLNAVLTGRINENNANAHANIGWEQFTNAVIKTISEKKEGVVFLLWGEYAQEKIRLIDQTKHHILKAEHPSRATVKGGFFGCKHFSKTNQLLEQNGIGPIDWKF*