AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021741.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021741.01.T01 MTR_4g074300 95.035 282 14 0 1 282 1 282 0.0 562
MsG0480021741.01.T01 MTR_4g074280 78.700 277 52 1 6 282 12 281 9.18e-154 431
MsG0480021741.01.T01 MTR_4g074330 71.648 261 70 3 22 282 46 302 1.27e-138 393
MsG0480021741.01.T01 MTR_4g077140 84.043 94 14 1 184 276 9 102 1.12e-50 162
MsG0480021741.01.T01 MTR_3g063510 82.456 57 10 0 66 122 5 61 4.19e-29 106
MsG0480021741.01.T01 MTR_4g074270 60.294 68 9 2 59 122 1 54 3.51e-16 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021741.01.T01 AT3G18630 63.158 266 92 3 19 282 69 330 1.86e-119 345

Find 71 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAAATACATTCTTCAAAA+TGG 0.191715 4:+63769276 None:intergenic
AAATTATAGTTGCCAGTCTA+TGG 0.259711 4:+63767474 None:intergenic
TCTGTTAAAGCTGTGATTCT+TGG 0.265676 4:-63769447 MsG0480021741.01.T01:CDS
AAGGAGCTTAAGAAAGATAT+TGG 0.290774 4:-63769256 MsG0480021741.01.T01:CDS
CTCTAAAACTAACCAACTTC+TGG 0.301966 4:-63767515 MsG0480021741.01.T01:CDS
TTAAATTCACATGCAAATAT+AGG 0.302412 4:-63767988 MsG0480021741.01.T01:CDS
AGCAATGGGGCTTTCATATT+CGG 0.315884 4:-63769323 MsG0480021741.01.T01:CDS
ACTGTGAAAAGAGGTTTCTT+TGG 0.334242 4:-63767651 MsG0480021741.01.T01:CDS
GACTTCTCCACAAGCATATC+AGG 0.336995 4:+63769618 None:intergenic
TTATCAGAATCTATGGTTAC+GGG 0.360478 4:-63769654 MsG0480021741.01.T01:intron
GCAGATTCTGCGGTTTCTCT+TGG 0.368092 4:+63769773 None:intergenic
TACATACTGTCATTGTGTTT+AGG 0.372600 4:+63769738 None:intergenic
CAAATGCGCAGGAGGATATA+CGG 0.386977 4:+63769503 None:intergenic
GGGGCTTTCATATTCGGTTC+CGG 0.387774 4:-63769317 MsG0480021741.01.T01:CDS
TTTATCAGAATCTATGGTTA+CGG 0.394551 4:-63769655 MsG0480021741.01.T01:intron
TAACCAACTTCTGGAGCAAA+AGG 0.401614 4:-63767506 MsG0480021741.01.T01:CDS
GACGGACCTGGTCAAGCAAT+GGG 0.416667 4:-63769337 MsG0480021741.01.T01:CDS
ATGCAAAGAGCCGGGGCATA+AGG 0.420515 4:+63769561 None:intergenic
GTTCTGATTGTATTCTTCTT+CGG 0.422844 4:+63769806 None:intergenic
TAAAGCTGTGATTCTTGGCC+AGG 0.427463 4:-63769442 MsG0480021741.01.T01:intron
CTTCTGGAGCAAAAGGGAAT+TGG 0.428250 4:-63767499 MsG0480021741.01.T01:CDS
TTGCTGAATGTTGTTCTCAC+AGG 0.439671 4:-63768201 MsG0480021741.01.T01:intron
ATTCACATGCAAATATAGGC+TGG 0.461912 4:-63767984 MsG0480021741.01.T01:CDS
AGGGAATTGGTCCCATAGAC+TGG 0.463210 4:-63767486 MsG0480021741.01.T01:CDS
AATACATTCTTCAAAATGGA+TGG 0.480854 4:+63769280 None:intergenic
AGGGGTCGTGTTTCTGCTGT+GGG 0.482950 4:-63767914 MsG0480021741.01.T01:CDS
ATATGCTTGTGGAGAAGTCT+TGG 0.486031 4:-63769614 MsG0480021741.01.T01:CDS
TCTTGGTTGGAAGCTTTACC+TGG 0.486448 4:-63769597 MsG0480021741.01.T01:CDS
AGTCTGCTCAGGAGAAAATT+CGG 0.486511 4:-63767888 MsG0480021741.01.T01:intron
TGGACGAACATGCAAAGAGC+CGG 0.491515 4:+63769552 None:intergenic
GGACGAACATGCAAAGAGCC+GGG 0.491844 4:+63769553 None:intergenic
TCCGAGGGCTTGAAAACCTA+TGG 0.492905 4:-63769846 MsG0480021741.01.T01:CDS
CAAGACGATCTCTGAGAAGA+AGG 0.497827 4:-63767938 MsG0480021741.01.T01:CDS
TCCGCGTTGACTGTGAAAAG+AGG 0.513655 4:-63767660 MsG0480021741.01.T01:CDS
GGTTGTTCCGTTCCATCTCA+CGG 0.526693 4:-63769235 MsG0480021741.01.T01:CDS
CGACGGACCTGGTCAAGCAA+TGG 0.534548 4:-63769338 MsG0480021741.01.T01:CDS
CGATCTCTGAGAAGAAGGAA+GGG 0.538663 4:-63767933 MsG0480021741.01.T01:CDS
CTTTCATATTCGGTTCCGGA+GGG 0.539855 4:-63769313 MsG0480021741.01.T01:CDS
GTATTCTTCTTCGGCAGAGA+GGG 0.540050 4:+63769815 None:intergenic
ACAGCTTTAACAGAATGAAA+AGG 0.542054 4:+63769456 None:intergenic
GATGGAACTTTAACTCCCTC+CGG 0.542718 4:+63769298 None:intergenic
GCTTGACCAGGTCCGTCGTA+AGG 0.544754 4:+63769343 None:intergenic
GCCTTTCGAGGCAGATTCTG+CGG 0.547231 4:+63769763 None:intergenic
AAGGGGTCGTGTTTCTGCTG+TGG 0.547333 4:-63767915 MsG0480021741.01.T01:CDS
GCTGTGGGGAGAGTCTGCTC+AGG 0.547805 4:-63767899 MsG0480021741.01.T01:CDS
AAGATTGCCGTGAGATGGAA+CGG 0.550896 4:+63769228 None:intergenic
TTCACATGCAAATATAGGCT+GGG 0.551088 4:-63767983 MsG0480021741.01.T01:CDS
ACCGCAGAATCTGCCTCGAA+AGG 0.551608 4:-63769764 MsG0480021741.01.T01:CDS
ACGATCTCTGAGAAGAAGGA+AGG 0.552096 4:-63767934 MsG0480021741.01.T01:CDS
AATTATAGTTGCCAGTCTAT+GGG 0.552607 4:+63767475 None:intergenic
AGAGAGGGCGGAGAAGCCAT+AGG 0.558619 4:+63769830 None:intergenic
TGTGTTTAGGAAGCCTTTCG+AGG 0.565414 4:+63769751 None:intergenic
TAGGAGCCTTACGACGGACC+TGG 0.575717 4:-63769349 MsG0480021741.01.T01:CDS
TTCTTCTTCGGCAGAGAGGG+CGG 0.576216 4:+63769818 None:intergenic
AACCAACTTCTGGAGCAAAA+GGG 0.578841 4:-63767505 MsG0480021741.01.T01:CDS
ATTTCACAAACCTTATGCCC+CGG 0.581446 4:-63769571 MsG0480021741.01.T01:CDS
TTGAAAATCAAATGCGCAGG+AGG 0.582274 4:+63769495 None:intergenic
GCTTGTGGAGAAGTCTTGGT+TGG 0.582641 4:-63769610 MsG0480021741.01.T01:CDS
TAAACTACCTGATATGCTTG+TGG 0.584571 4:-63769625 MsG0480021741.01.T01:CDS
GGTTTCTCTTGGACAATGTG+AGG 0.589321 4:+63769784 None:intergenic
GAAAGCCCCATTGCTTGACC+AGG 0.595008 4:+63769331 None:intergenic
GCATTGAAAATCAAATGCGC+AGG 0.600626 4:+63769492 None:intergenic
ATGGCTTCTTCATACTCCGA+GGG 0.611571 4:-63769861 MsG0480021741.01.T01:CDS
TAAGGTTTGTGAAATTCACC+AGG 0.613272 4:+63769579 None:intergenic
GCTTTCATATTCGGTTCCGG+AGG 0.619613 4:-63769314 MsG0480021741.01.T01:CDS
GATCTCTGAGAAGAAGGAAG+GGG 0.625589 4:-63767932 MsG0480021741.01.T01:CDS
TGTATTCTTCTTCGGCAGAG+AGG 0.627218 4:+63769814 None:intergenic
GACGAACATGCAAAGAGCCG+GGG 0.645848 4:+63769554 None:intergenic
GGGGTCGTGTTTCTGCTGTG+GGG 0.654689 4:-63767913 MsG0480021741.01.T01:CDS
AATGGCTTCTTCATACTCCG+AGG 0.670407 4:-63769862 MsG0480021741.01.T01:CDS
ACGGACCTGGTCAAGCAATG+GGG 0.727200 4:-63769336 MsG0480021741.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCGAAAAAATTATATAAATT+TGG - Chr4:63769538-63769557 MsG0480021741.01.T01:CDS 10.0%
!!! GTATTTTTTTTTTTTATGAA+AGG - Chr4:63768818-63768837 MsG0480021741.01.T01:intron 10.0%
!! ATAAATAAGATTGAAATCTA+AGG - Chr4:63768844-63768863 MsG0480021741.01.T01:intron 15.0%
!! TAAATAAGATTGAAATCTAA+GGG - Chr4:63768845-63768864 MsG0480021741.01.T01:intron 15.0%
!! TTAACACAATTCAATATAAA+AGG + Chr4:63769778-63769797 None:intergenic 15.0%
!! ACAAGCTGAAAATATATATT+TGG + Chr4:63768391-63768410 None:intergenic 20.0%
!! ATTTGTAAGAATGAAATGTT+AGG + Chr4:63768235-63768254 None:intergenic 20.0%
!! CTTAAATACATTCTTCAAAA+TGG + Chr4:63768065-63768084 None:intergenic 20.0%
!! TAAACACAGTTCAATATAAA+AGG + Chr4:63769732-63769751 None:intergenic 20.0%
!! TACAGAATCAAAATAATGAA+TGG + Chr4:63768158-63768177 None:intergenic 20.0%
!! TTAAATTCACATGCAAATAT+AGG - Chr4:63769350-63769369 MsG0480021741.01.T01:intron 20.0%
!!! AAATGTTTATTTTTGTGGAA+TGG - Chr4:63769564-63769583 MsG0480021741.01.T01:CDS 20.0%
!!! AATGTTTATTTTTGTGGAAT+GGG - Chr4:63769565-63769584 MsG0480021741.01.T01:CDS 20.0%
!!! AATTGGTTATTTTGATATTG+TGG - Chr4:63768189-63768208 MsG0480021741.01.T01:intron 20.0%
!!! ACAACTTTAACTTAATTTCA+GGG - Chr4:63769107-63769126 MsG0480021741.01.T01:intron 20.0%
!!! ATTCTGATTTTGGTTATTTT+AGG - Chr4:63767970-63767989 MsG0480021741.01.T01:CDS 20.0%
!!! ATTTTCTTTATCAGAATCTA+TGG - Chr4:63767677-63767696 MsG0480021741.01.T01:CDS 20.0%
!!! CATTTTGAAGAATGTATTTA+AGG - Chr4:63768063-63768082 MsG0480021741.01.T01:intron 20.0%
! AAATGAGTGAATAGAAGAAA+AGG + Chr4:63769011-63769030 None:intergenic 25.0%
! AATACATTCTTCAAAATGGA+TGG + Chr4:63768061-63768080 None:intergenic 25.0%
! AGAAAATTTCAAGAATGACA+TGG - Chr4:63768525-63768544 MsG0480021741.01.T01:intron 25.0%
! CTCTTCTTGATAAAATCTAA+GGG + Chr4:63768562-63768581 None:intergenic 25.0%
! TAAATATGTAATCAGTGATG+TGG - Chr4:63769488-63769507 MsG0480021741.01.T01:CDS 25.0%
! TATCAAGAAATGGAAATCAT+GGG - Chr4:63768780-63768799 MsG0480021741.01.T01:intron 25.0%
! TCGACGATTCAATAAAATTA+AGG + Chr4:63768936-63768955 None:intergenic 25.0%
! TTTATCAGAATCTATGGTTA+CGG - Chr4:63767683-63767702 MsG0480021741.01.T01:CDS 25.0%
!! AATTTTATTGAATCGTCGAT+GGG - Chr4:63768937-63768956 MsG0480021741.01.T01:intron 25.0%
!! ATGTTTTACAGAAAATTGAG+AGG + Chr4:63768295-63768314 None:intergenic 25.0%
!! CACAACTTTAACTTAATTTC+AGG - Chr4:63769106-63769125 MsG0480021741.01.T01:intron 25.0%
!! TAATTTTATTGAATCGTCGA+TGG - Chr4:63768936-63768955 MsG0480021741.01.T01:intron 25.0%
!! TGAAAGCAAAAATCTCATTT+TGG + Chr4:63767809-63767828 None:intergenic 25.0%
!!! GGAGTAAATGTTTATTTTTG+TGG - Chr4:63769559-63769578 MsG0480021741.01.T01:CDS 25.0%
!!! TAATTTGATTTTCTCTGAAC+AGG - Chr4:63769795-63769814 MsG0480021741.01.T01:CDS 25.0%
!!! TTTTGATTCTGTAGAAATGT+TGG - Chr4:63768165-63768184 MsG0480021741.01.T01:intron 25.0%
AAGGAGCTTAAGAAAGATAT+TGG - Chr4:63768082-63768101 MsG0480021741.01.T01:intron 30.0%
AGAAAGATTCAAGAATGACA+TGG + Chr4:63768882-63768901 None:intergenic 30.0%
ATAACCAAAATCAGAATCAG+TGG + Chr4:63767967-63767986 None:intergenic 30.0%
ATCAAGAAATGGAAATCATG+GGG - Chr4:63768781-63768800 MsG0480021741.01.T01:intron 30.0%
CAAACATAATACACCAAACA+TGG + Chr4:63769276-63769295 None:intergenic 30.0%
CATGATTTCCATTTCTTGAT+AGG + Chr4:63768781-63768800 None:intergenic 30.0%
CATGTTATTCTGCTTACTTT+GGG - Chr4:63769595-63769614 MsG0480021741.01.T01:CDS 30.0%
CTATCAAGAAATGGAAATCA+TGG - Chr4:63768779-63768798 MsG0480021741.01.T01:intron 30.0%
CTGTAAAACATACAGATTTG+TGG - Chr4:63768304-63768323 MsG0480021741.01.T01:intron 30.0%
GCTCTTCTTGATAAAATCTA+AGG + Chr4:63768563-63768582 None:intergenic 30.0%
GTTCTGATTGTATTCTTCTT+CGG + Chr4:63767535-63767554 None:intergenic 30.0%
TACATACTGTCATTGTGTTT+AGG + Chr4:63767603-63767622 None:intergenic 30.0%
TCTGTAGAAATGTTGGAAAT+TGG - Chr4:63768172-63768191 MsG0480021741.01.T01:intron 30.0%
TTATCAGAATCTATGGTTAC+GGG - Chr4:63767684-63767703 MsG0480021741.01.T01:CDS 30.0%
TTGCACAATTAAAGCATACA+CGG - Chr4:63768337-63768356 MsG0480021741.01.T01:intron 30.0%
! AAAAGTGTGATTTCCTTGAA+TGG - Chr4:63768269-63768288 MsG0480021741.01.T01:intron 30.0%
! ACAGCTTTAACAGAATGAAA+AGG + Chr4:63767885-63767904 None:intergenic 30.0%
! AGCATTTTCCTATCAAGAAA+TGG - Chr4:63768770-63768789 MsG0480021741.01.T01:intron 30.0%
!! TTGTAACTAGCTTTCAATTC+AGG - Chr4:63769308-63769327 MsG0480021741.01.T01:CDS 30.0%
!!! AGAATTTTTCAAGACACATG+TGG + Chr4:63768727-63768746 None:intergenic 30.0%
ACTGTGAAAAGAGGTTTCTT+TGG - Chr4:63769687-63769706 MsG0480021741.01.T01:intron 35.0%
AGAAAATTCGGTACTGTCAT+TGG - Chr4:63769462-63769481 MsG0480021741.01.T01:CDS 35.0%
AGTGAATCCATTGTGAACAA+CGG - Chr4:63768362-63768381 MsG0480021741.01.T01:intron 35.0%
ATAATACACCAAACATGGTG+AGG + Chr4:63769271-63769290 None:intergenic 35.0%
ATTCACATGCAAATATAGGC+TGG - Chr4:63769354-63769373 MsG0480021741.01.T01:intron 35.0%
CAAATTGAAATCCACAAACC+TGG + Chr4:63767917-63767936 None:intergenic 35.0%
GAACTTCTAATCAAGAGTCT+TGG - Chr4:63769181-63769200 MsG0480021741.01.T01:intron 35.0%
GATGGGATTCTTATGAAGTT+AGG - Chr4:63768954-63768973 MsG0480021741.01.T01:intron 35.0%
GCATGTTATTCTGCTTACTT+TGG - Chr4:63769594-63769613 MsG0480021741.01.T01:CDS 35.0%
TAAACTACCTGATATGCTTG+TGG - Chr4:63767713-63767732 MsG0480021741.01.T01:intron 35.0%
TAAGGTTTGTGAAATTCACC+AGG + Chr4:63767762-63767781 None:intergenic 35.0%
TAATACACCAAACATGGTGA+GGG + Chr4:63769270-63769289 None:intergenic 35.0%
TATTCACTCATTTGTGCAGA+TGG - Chr4:63769018-63769037 MsG0480021741.01.T01:intron 35.0%
TCACGGCAATCTTGAAAAAT+GGG - Chr4:63768120-63768139 MsG0480021741.01.T01:intron 35.0%
TCTGTTAAAGCTGTGATTCT+TGG - Chr4:63767891-63767910 MsG0480021741.01.T01:CDS 35.0%
TGTGGCTAAAAAATAGGAAG+TGG - Chr4:63768674-63768693 MsG0480021741.01.T01:intron 35.0%
TTCACATGCAAATATAGGCT+GGG - Chr4:63769355-63769374 MsG0480021741.01.T01:intron 35.0%
TTTGTGCAGATGGTTTAACA+TGG - Chr4:63769028-63769047 MsG0480021741.01.T01:intron 35.0%
!! AACTAGCTTTCAATTCAGGT+AGG - Chr4:63769312-63769331 MsG0480021741.01.T01:CDS 35.0%
!! CTCTAAAACTAACCAACTTC+TGG - Chr4:63769823-63769842 MsG0480021741.01.T01:CDS 35.0%
!!! AGCTTTTAGAATGTGATGCT+TGG + Chr4:63769649-63769668 None:intergenic 35.0%
!!! TACTCCACTGATTCTGATTT+TGG - Chr4:63767960-63767979 MsG0480021741.01.T01:CDS 35.0%
!!! TTATTTTAGGAGCCTTACGA+CGG - Chr4:63767983-63768002 MsG0480021741.01.T01:CDS 35.0%
AATGGAAATCATGGGGTGAT+TGG - Chr4:63768788-63768807 MsG0480021741.01.T01:intron 40.0%
AGCAATGGGGCTTTCATATT+CGG - Chr4:63768015-63768034 MsG0480021741.01.T01:intron 40.0%
AGTCTGCTCAGGAGAAAATT+CGG - Chr4:63769450-63769469 MsG0480021741.01.T01:CDS 40.0%
ATATGCTTGTGGAGAAGTCT+TGG - Chr4:63767724-63767743 MsG0480021741.01.T01:intron 40.0%
ATTTCACAAACCTTATGCCC+CGG - Chr4:63767767-63767786 MsG0480021741.01.T01:intron 40.0%
CTATTTGCCACAATTCAAGG+AGG - Chr4:63768651-63768670 MsG0480021741.01.T01:intron 40.0%
CTCACGGCAATCTTGAAAAA+TGG - Chr4:63768119-63768138 MsG0480021741.01.T01:intron 40.0%
GAAAATTGAGAGGCCATTCA+AGG + Chr4:63768285-63768304 None:intergenic 40.0%
GCACTATTTGCCACAATTCA+AGG - Chr4:63768648-63768667 MsG0480021741.01.T01:intron 40.0%
GCATTGAAAATCAAATGCGC+AGG + Chr4:63767849-63767868 None:intergenic 40.0%
GGCAAATAGTGCATTGTGAT+TGG + Chr4:63768640-63768659 None:intergenic 40.0%
TTGAAAATCAAATGCGCAGG+AGG + Chr4:63767846-63767865 None:intergenic 40.0%
TTGCTGAATGTTGTTCTCAC+AGG - Chr4:63769137-63769156 MsG0480021741.01.T01:intron 40.0%
! AGGAGGTGTGGCTAAAAAAT+AGG - Chr4:63768668-63768687 MsG0480021741.01.T01:intron 40.0%
!! AACCAACTTCTGGAGCAAAA+GGG - Chr4:63769833-63769852 MsG0480021741.01.T01:CDS 40.0%
!! TAACCAACTTCTGGAGCAAA+AGG - Chr4:63769832-63769851 MsG0480021741.01.T01:CDS 40.0%
!! TTTTCAAGATTGCCGTGAGA+TGG + Chr4:63768118-63768137 None:intergenic 40.0%
AAGATTGCCGTGAGATGGAA+CGG + Chr4:63768113-63768132 None:intergenic 45.0%
ACAATGACCCTCACCATGTT+TGG - Chr4:63769260-63769279 MsG0480021741.01.T01:CDS 45.0%
ATGGCTTCTTCATACTCCGA+GGG - Chr4:63767477-63767496 MsG0480021741.01.T01:CDS 45.0%
CAAATGCGCAGGAGGATATA+CGG + Chr4:63767838-63767857 None:intergenic 45.0%
CTTTCATATTCGGTTCCGGA+GGG - Chr4:63768025-63768044 MsG0480021741.01.T01:intron 45.0%
GACTTCTCCACAAGCATATC+AGG + Chr4:63767723-63767742 None:intergenic 45.0%
GATGGAACTTTAACTCCCTC+CGG + Chr4:63768043-63768062 None:intergenic 45.0%
GGTTTCTCTTGGACAATGTG+AGG + Chr4:63767557-63767576 None:intergenic 45.0%
GTATTCTTCTTCGGCAGAGA+GGG + Chr4:63767526-63767545 None:intergenic 45.0%
TAAAGCTGTGATTCTTGGCC+AGG - Chr4:63767896-63767915 MsG0480021741.01.T01:CDS 45.0%
TCTTGGTTGGAAGCTTTACC+TGG - Chr4:63767741-63767760 MsG0480021741.01.T01:intron 45.0%
TGTATTCTTCTTCGGCAGAG+AGG + Chr4:63767527-63767546 None:intergenic 45.0%
TGTGTTTAGGAAGCCTTTCG+AGG + Chr4:63767590-63767609 None:intergenic 45.0%
TTGGTCACCGTTGTTCACAA+TGG + Chr4:63768372-63768391 None:intergenic 45.0%
TTTGTACTTCGCTACGTGCA+TGG - Chr4:63769225-63769244 MsG0480021741.01.T01:CDS 45.0%
! ACCTCTTTTCACAGTCAACG+CGG + Chr4:63769682-63769701 None:intergenic 45.0%
! ACGATCTCTGAGAAGAAGGA+AGG - Chr4:63769404-63769423 MsG0480021741.01.T01:intron 45.0%
! CAAGACGATCTCTGAGAAGA+AGG - Chr4:63769400-63769419 MsG0480021741.01.T01:intron 45.0%
! CGATCTCTGAGAAGAAGGAA+GGG - Chr4:63769405-63769424 MsG0480021741.01.T01:intron 45.0%
! GATCTCTGAGAAGAAGGAAG+GGG - Chr4:63769406-63769425 MsG0480021741.01.T01:intron 45.0%
! TCTTGAAAAATGGGCTCTGC+AGG - Chr4:63768129-63768148 MsG0480021741.01.T01:intron 45.0%
! TTCCCTTTTGCTCCAGAAGT+TGG + Chr4:63769838-63769857 None:intergenic 45.0%
!! AGTGTCAGTTCTAAACGCAG+AGG - Chr4:63768979-63768998 MsG0480021741.01.T01:intron 45.0%
!! CTTCTGGAGCAAAAGGGAAT+TGG - Chr4:63769839-63769858 MsG0480021741.01.T01:CDS 45.0%
!! GTGTCAGTTCTAAACGCAGA+GGG - Chr4:63768980-63768999 MsG0480021741.01.T01:intron 45.0%
!! TGTCAGTTCTAAACGCAGAG+GGG - Chr4:63768981-63769000 MsG0480021741.01.T01:intron 45.0%
AGCCACACCTCCTTGAATTG+TGG + Chr4:63768661-63768680 None:intergenic 50.0%
AGGGAATTGGTCCCATAGAC+TGG - Chr4:63769852-63769871 MsG0480021741.01.T01:CDS 50.0%
GCAGATTCTGCGGTTTCTCT+TGG + Chr4:63767568-63767587 None:intergenic 50.0%
GCTTGTGGAGAAGTCTTGGT+TGG - Chr4:63767728-63767747 MsG0480021741.01.T01:intron 50.0%
GCTTTCATATTCGGTTCCGG+AGG - Chr4:63768024-63768043 MsG0480021741.01.T01:intron 50.0%
GGGGCTTTCATATTCGGTTC+CGG - Chr4:63768021-63768040 MsG0480021741.01.T01:intron 50.0%
GGTTGTTCCGTTCCATCTCA+CGG - Chr4:63768103-63768122 MsG0480021741.01.T01:intron 50.0%
GTGATTCTTGGCCAGGTTTG+TGG - Chr4:63767903-63767922 MsG0480021741.01.T01:CDS 50.0%
TCCGAGGGCTTGAAAACCTA+TGG - Chr4:63767492-63767511 MsG0480021741.01.T01:CDS 50.0%
TGCCACAATTCAAGGAGGTG+TGG - Chr4:63768656-63768675 MsG0480021741.01.T01:intron 50.0%
TGGACGAACATGCAAAGAGC+CGG + Chr4:63767789-63767808 None:intergenic 50.0%
! CTTTTCACAGTCAACGCGGA+GGG + Chr4:63769678-63769697 None:intergenic 50.0%
! TCTTTTCACAGTCAACGCGG+AGG + Chr4:63769679-63769698 None:intergenic 50.0%
!! GCCATAGGTTTTCAAGCCCT+CGG + Chr4:63767496-63767515 None:intergenic 50.0%
!! GTCAGTTCTAAACGCAGAGG+GGG - Chr4:63768982-63769001 MsG0480021741.01.T01:intron 50.0%
!! TCCGCGTTGACTGTGAAAAG+AGG - Chr4:63769678-63769697 MsG0480021741.01.T01:intron 50.0%
ACCGCAGAATCTGCCTCGAA+AGG - Chr4:63767574-63767593 MsG0480021741.01.T01:intron 55.0%
ACGGACCTGGTCAAGCAATG+GGG - Chr4:63768002-63768021 MsG0480021741.01.T01:CDS 55.0%
ATGCAAAGAGCCGGGGCATA+AGG + Chr4:63767780-63767799 None:intergenic 55.0%
GAAAGCCCCATTGCTTGACC+AGG + Chr4:63768010-63768029 None:intergenic 55.0%
GACGAACATGCAAAGAGCCG+GGG + Chr4:63767787-63767806 None:intergenic 55.0%
GACGGACCTGGTCAAGCAAT+GGG - Chr4:63768001-63768020 MsG0480021741.01.T01:CDS 55.0%
GCCTTTCGAGGCAGATTCTG+CGG + Chr4:63767578-63767597 None:intergenic 55.0%
GGACGAACATGCAAAGAGCC+GGG + Chr4:63767788-63767807 None:intergenic 55.0%
TTCTTCTTCGGCAGAGAGGG+CGG + Chr4:63767523-63767542 None:intergenic 55.0%
! AAGGGGTCGTGTTTCTGCTG+TGG - Chr4:63769423-63769442 MsG0480021741.01.T01:intron 55.0%
! AGGGGTCGTGTTTCTGCTGT+GGG - Chr4:63769424-63769443 MsG0480021741.01.T01:intron 55.0%
AGAGAGGGCGGAGAAGCCAT+AGG + Chr4:63767511-63767530 None:intergenic 60.0%
CGACGGACCTGGTCAAGCAA+TGG - Chr4:63768000-63768019 MsG0480021741.01.T01:CDS 60.0%
GCTTGACCAGGTCCGTCGTA+AGG + Chr4:63767998-63768017 None:intergenic 60.0%
TAGGAGCCTTACGACGGACC+TGG - Chr4:63767989-63768008 MsG0480021741.01.T01:CDS 60.0%
! GGGGTCGTGTTTCTGCTGTG+GGG - Chr4:63769425-63769444 MsG0480021741.01.T01:intron 60.0%
GCTGTGGGGAGAGTCTGCTC+AGG - Chr4:63769439-63769458 MsG0480021741.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 63767477 63769883 63767477 ID=MsG0480021741.01;Name=MsG0480021741.01
Chr4 mRNA 63767477 63769883 63767477 ID=MsG0480021741.01.T01;Parent=MsG0480021741.01;Name=MsG0480021741.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|0.66|0.85|7|0|282
Chr4 exon 63769745 63769883 63769745 ID=MsG0480021741.01.T01:exon:3495;Parent=MsG0480021741.01.T01
Chr4 exon 63769443 63769669 63769443 ID=MsG0480021741.01.T01:exon:3496;Parent=MsG0480021741.01.T01
Chr4 exon 63769210 63769368 63769210 ID=MsG0480021741.01.T01:exon:3497;Parent=MsG0480021741.01.T01
Chr4 exon 63768202 63768232 63768202 ID=MsG0480021741.01.T01:exon:3498;Parent=MsG0480021741.01.T01
Chr4 exon 63767889 63768030 63767889 ID=MsG0480021741.01.T01:exon:3499;Parent=MsG0480021741.01.T01
Chr4 exon 63767645 63767728 63767645 ID=MsG0480021741.01.T01:exon:3500;Parent=MsG0480021741.01.T01
Chr4 exon 63767477 63767543 63767477 ID=MsG0480021741.01.T01:exon:3501;Parent=MsG0480021741.01.T01
Chr4 CDS 63769745 63769883 63769745 ID=MsG0480021741.01.T01:cds;Parent=MsG0480021741.01.T01
Chr4 CDS 63769443 63769669 63769443 ID=MsG0480021741.01.T01:cds;Parent=MsG0480021741.01.T01
Chr4 CDS 63769210 63769368 63769210 ID=MsG0480021741.01.T01:cds;Parent=MsG0480021741.01.T01
Chr4 CDS 63768202 63768232 63768202 ID=MsG0480021741.01.T01:cds;Parent=MsG0480021741.01.T01
Chr4 CDS 63767889 63768030 63767889 ID=MsG0480021741.01.T01:cds;Parent=MsG0480021741.01.T01
Chr4 CDS 63767645 63767728 63767645 ID=MsG0480021741.01.T01:cds;Parent=MsG0480021741.01.T01
Chr4 CDS 63767477 63767543 63767477 ID=MsG0480021741.01.T01:cds;Parent=MsG0480021741.01.T01
Gene Sequence

>MsG0480021741.01.T01

ATGGCTTCTTCATACTCCGAGGGCTTGAAAACCTATGGCTTCTCCGCCCTCTCTGCCGAAGAAGAATACAATCAGAACCTCACATTGTCCAAGAGAAACCGCAGAATCTGCCTCGAAAGGCTTCCTAAACACAATGACAAATCTATGGTTACGGGTCGCATTAAACTACCTGATATGCTTGTGGAGAAGTCTTGGTTGGAAGCTTTACCTGGTGAATTTCACAAACCTTATGCCCCGGCTCTTTGCATGTTCGTCCAAAATGAGATTTTTGCTTTCAAAGATTCCGTATATCCTCCTGCGCATTTGATTTTCAATGCTCTTAATACTACTCCTTTTCATTCTGTTAAAGCTGTGATTCTTGGCCAGGAGCCTTACGACGGACCTGGTCAAGCAATGGGGCTTTCATATTCGGTTCCGGAGGGAGTTAAAGTTCCATCCATTTTGAAGAATGTATTTAAGGAGCTTAAGAAAGATATTGGTTGTTCCGTTCCATCTCACGGCAATCTTGAAAAATGGGCTCTGCAGGGCATTCTCTTGCTGAATGTTGTTCTCACAGGTAGGAAGAATGAAGATAATTTAAATTCACATGCAAATATAGGCTGGGAACATTTTACAGATGTTGTTATCAAGACGATCTCTGAGAAGAAGGAAGGGGTCGTGTTTCTGCTGTGGGGAGAGTCTGCTCAGGAGAAAATTCGCTTAATTGATCAAACCAAGCATCACATTCTAAAAGCTGAACATCCCTCCGCGTTGACTGTGAAAAGAGGTTTCTTTGGCTGCAAGCACTTCTCTAAAACTAACCAACTTCTGGAGCAAAAGGGAATTGGTCCCATAGACTGGCAACTATAA
Protein sequence

>MsG0480021741.01.T01

MASSYSEGLKTYGFSALSAEEEYNQNLTLSKRNRRICLERLPKHNDKSMVTGRIKLPDMLVEKSWLEALPGEFHKPYAPALCMFVQNEIFAFKDSVYPPAHLIFNALNTTPFHSVKAVILGQEPYDGPGQAMGLSYSVPEGVKVPSILKNVFKELKKDIGCSVPSHGNLEKWALQGILLLNVVLTGRKNEDNLNSHANIGWEHFTDVVIKTISEKKEGVVFLLWGESAQEKIRLIDQTKHHILKAEHPSALTVKRGFFGCKHFSKTNQLLEQKGIGPIDWQL*