AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022841.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022841.01.T01 MTR_4g094792 79.268 82 17 0 1 82 1 82 4.54e-44 139
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022841.01.T01 AT4G20150 71.831 71 20 0 10 80 10 80 4.35e-34 113

Find 2 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATACAACATGGCAATTA+AGG 0.184743 4:-77380470 MsG0480022841.01.T01:intron
GATGTTATACTCATACAACA+TGG 0.729852 4:-77380479 MsG0480022841.01.T01:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATTTAACTATTATTAG+GGG - Chr4:77377458-77377477 MsG0480022841.01.T01:intron 10.0%
!!! TTAATTTTTCTTTGAAAATT+TGG + Chr4:77376895-77376914 None:intergenic 10.0%
!! AACAATATAATAAATAAGCA+CGG + Chr4:77380252-77380271 None:intergenic 15.0%
!! AAGAATTCAATTAGTATTTA+TGG + Chr4:77377248-77377267 None:intergenic 15.0%
!!! AAAAATTTGTTACTATATTG+AGG - Chr4:77379611-77379630 MsG0480022841.01.T01:intron 15.0%
!!! AAAATGATTTTTAGCAAAAA+TGG - Chr4:77376543-77376562 MsG0480022841.01.T01:exon 15.0%
!!! TCTTTTAATTGATAAATGTT+TGG - Chr4:77376941-77376960 MsG0480022841.01.T01:intron 15.0%
!! AAAAAAAAAAATGTCTTTGG+TGG - Chr4:77380017-77380036 MsG0480022841.01.T01:intron 20.0%
!! AAAATCAAAATCACAGTATT+TGG + Chr4:77379800-77379819 None:intergenic 20.0%
!! AAATCAAAATCACAGTATTT+GGG + Chr4:77379799-77379818 None:intergenic 20.0%
!! AACAAGAAATCATAAAACAA+AGG + Chr4:77380367-77380386 None:intergenic 20.0%
!! AAGAAGATGAAAAAATGTAT+TGG - Chr4:77378348-77378367 MsG0480022841.01.T01:intron 20.0%
!! AATTAAAACAAACAAGATCT+AGG + Chr4:77379156-77379175 None:intergenic 20.0%
!! ACCAAAAAAAAAAATGTCTT+TGG - Chr4:77380014-77380033 MsG0480022841.01.T01:intron 20.0%
!! AGAAGATGAAAAAATGTATT+GGG - Chr4:77378349-77378368 MsG0480022841.01.T01:intron 20.0%
!! AGATAAATCACATTAATAAG+TGG + Chr4:77379882-77379901 None:intergenic 20.0%
!! ATAAGCATATTATCAATATC+AGG + Chr4:77378835-77378854 None:intergenic 20.0%
!! ATACATAATATACGTAAGAT+CGG + Chr4:77377387-77377406 None:intergenic 20.0%
!! TAAAAGAAATGTTATAACAC+TGG + Chr4:77376928-77376947 None:intergenic 20.0%
!! TACAATATACATAGTCAATA+CGG + Chr4:77378420-77378439 None:intergenic 20.0%
!! TTAAAACAAAAAATATGGGT+TGG + Chr4:77376521-77376540 None:intergenic 20.0%
!!! AAAAAATCATATTTGAAGTG+CGG + Chr4:77376424-77376443 None:intergenic 20.0%
!!! ACCAAAGACATTTTTTTTTT+TGG + Chr4:77380018-77380037 None:intergenic 20.0%
!!! ATTGAGTTTTTTTTTTGTGA+TGG - Chr4:77377349-77377368 MsG0480022841.01.T01:intron 20.0%
!!! GTTTTGATTTTGAGTAATTT+CGG - Chr4:77377961-77377980 MsG0480022841.01.T01:intron 20.0%
!!! TAGTATTTTATGGTAATTTC+TGG - Chr4:77380108-77380127 MsG0480022841.01.T01:intron 20.0%
!!! TGTAATTATGATGATGATTT+AGG - Chr4:77377984-77378003 MsG0480022841.01.T01:intron 20.0%
!!! TTATATTGTTTTATTGCAGA+TGG - Chr4:77380262-77380281 MsG0480022841.01.T01:intron 20.0%
!!! TTTAAAACTTAAAAAGACCT+AGG - Chr4:77379704-77379723 MsG0480022841.01.T01:intron 20.0%
!!! TTTCACATTTGTTGTAAATT+TGG - Chr4:77376494-77376513 MsG0480022841.01.T01:exon 20.0%
! ACATCTATACAACATATCAT+TGG - Chr4:77377194-77377213 MsG0480022841.01.T01:intron 25.0%
! AGAAAGACTATTAGAAGAAT+TGG - Chr4:77379035-77379054 MsG0480022841.01.T01:CDS 25.0%
! AGTTTATCTTCTGATAAGTT+TGG + Chr4:77378256-77378275 None:intergenic 25.0%
! ATGCCACAAATATGAAAATA+GGG + Chr4:77379082-77379101 None:intergenic 25.0%
! ATTAAAACTAAAAACCTACG+TGG + Chr4:77379654-77379673 None:intergenic 25.0%
! CCATAAAATACTAAAATGAC+AGG + Chr4:77380101-77380120 None:intergenic 25.0%
! CTTATCAGAAGATAAACTTA+TGG - Chr4:77378258-77378277 MsG0480022841.01.T01:intron 25.0%
! GAAAGACTATTAGAAGAATT+GGG - Chr4:77379036-77379055 MsG0480022841.01.T01:CDS 25.0%
! GATACAGACAACTAAATTAA+AGG + Chr4:77378699-77378718 None:intergenic 25.0%
! TACATAATATACGTAAGATC+GGG + Chr4:77377386-77377405 None:intergenic 25.0%
! TAGATGATGTTATGAACTTA+TGG - Chr4:77380466-77380485 MsG0480022841.01.T01:intron 25.0%
! TCTAATAGTCTTTCTTAACT+TGG + Chr4:77379030-77379049 None:intergenic 25.0%
! TTTAGCTGTAATAATGTCTT+TGG - Chr4:77379980-77379999 MsG0480022841.01.T01:intron 25.0%
! TTTCTTTAACTCTTGTTACT+AGG - Chr4:77378725-77378744 MsG0480022841.01.T01:intron 25.0%
!! AAAAATCATATTTGAAGTGC+GGG + Chr4:77376423-77376442 None:intergenic 25.0%
!! TAAACGTGATATTTTGTCTT+CGG + Chr4:77376594-77376613 None:intergenic 25.0%
!! TATATCGTTTAAGTTCGAAT+AGG + Chr4:77376994-77377013 None:intergenic 25.0%
!! TTAACGTGAATTCTGAAAAA+TGG + Chr4:77378756-77378775 None:intergenic 25.0%
!!! AAAGAAGAAGACAGATTTTT+TGG + Chr4:77378902-77378921 None:intergenic 25.0%
!!! AAGATTTTGTTTGTTTCTGA+TGG - Chr4:77378580-77378599 MsG0480022841.01.T01:CDS 25.0%
!!! ACGTAGGTTTTTAGTTTTAA+TGG - Chr4:77379653-77379672 MsG0480022841.01.T01:intron 25.0%
!!! AGTTTTTTTTTTGTGATGGT+CGG - Chr4:77377353-77377372 MsG0480022841.01.T01:intron 25.0%
!!! CCTGTCATTTTAGTATTTTA+TGG - Chr4:77380098-77380117 MsG0480022841.01.T01:intron 25.0%
!!! GTTTTAATGGAAACTCTAAA+AGG - Chr4:77379666-77379685 MsG0480022841.01.T01:intron 25.0%
!!! GTTTTAGTTTAGTTTTCTGT+TGG - Chr4:77379179-77379198 MsG0480022841.01.T01:intron 25.0%
!!! TTTGGATTTGTTGTAATTCA+CGG - Chr4:77379836-77379855 MsG0480022841.01.T01:intron 25.0%
AAAACTTAAAAAGACCTAGG+TGG - Chr4:77379707-77379726 MsG0480022841.01.T01:intron 30.0%
AAACTTAAAAAGACCTAGGT+GGG - Chr4:77379708-77379727 MsG0480022841.01.T01:intron 30.0%
AACGACTTATTTGTAGCTTA+TGG - Chr4:77378071-77378090 MsG0480022841.01.T01:intron 30.0%
AATAAGTCGTTTATCCAAAC+AGG + Chr4:77378062-77378081 None:intergenic 30.0%
AATGTAACGTCTTTCATTAG+CGG + Chr4:77377873-77377892 None:intergenic 30.0%
ACACAATTCTCTTCAATATG+TGG + Chr4:77378493-77378512 None:intergenic 30.0%
ACTAGGCAAAATTGTATTTG+TGG - Chr4:77378672-77378691 MsG0480022841.01.T01:intron 30.0%
AGTTCTTAGCGGAAAAAAAA+TGG + Chr4:77376862-77376881 None:intergenic 30.0%
ATAGAAGTGGGGAAAAAATT+AGG + Chr4:77378935-77378954 None:intergenic 30.0%
ATATGAAAACAGCTTATGAC+AGG + Chr4:77378176-77378195 None:intergenic 30.0%
CTATCTGGCATTAGAAATTT+AGG - Chr4:77378319-77378338 MsG0480022841.01.T01:intron 30.0%
CTCCAATCAAAAACCTATTA+TGG + Chr4:77379224-77379243 None:intergenic 30.0%
CTTTGTAACTAGTTGCTAAT+GGG - Chr4:77379356-77379375 MsG0480022841.01.T01:intron 30.0%
GAGAACAACATAGTTTAGAA+CGG - Chr4:77377508-77377527 MsG0480022841.01.T01:intron 30.0%
GATGAAAAAATGTATTGGGT+AGG - Chr4:77378353-77378372 MsG0480022841.01.T01:intron 30.0%
GATGCCACAAATATGAAAAT+AGG + Chr4:77379083-77379102 None:intergenic 30.0%
GATGTTATACTCATACAACA+TGG - Chr4:77376352-77376371 MsG0480022841.01.T01:exon 30.0%
GGTACAATCAAACATCTTAA+TGG - Chr4:77379756-77379775 MsG0480022841.01.T01:intron 30.0%
TAAACTAAGGAAGGCAAAAT+GGG + Chr4:77379119-77379138 None:intergenic 30.0%
TAGAAGTGGGGAAAAAATTA+GGG + Chr4:77378934-77378953 None:intergenic 30.0%
TATGGAAGAGAATCTATTTG+TGG - Chr4:77378276-77378295 MsG0480022841.01.T01:intron 30.0%
TCTGTTTAGACACACATAAA+TGG - Chr4:77379456-77379475 MsG0480022841.01.T01:intron 30.0%
TGACAGGAAAAAAATTGACT+TGG + Chr4:77380085-77380104 None:intergenic 30.0%
TGCCACAAATATGAAAATAG+GGG + Chr4:77379081-77379100 None:intergenic 30.0%
TTGTTTATCTGCACCATAAT+AGG - Chr4:77379208-77379227 MsG0480022841.01.T01:CDS 30.0%
TTTCATATTTGTGGCATCAT+TGG - Chr4:77379085-77379104 MsG0480022841.01.T01:intron 30.0%
TTTGGGAACAAACTAAACTA+AGG + Chr4:77379132-77379151 None:intergenic 30.0%
! AAACGTGATATTTTGTCTTC+GGG + Chr4:77376593-77376612 None:intergenic 30.0%
! AACAAACAAGATCTAGGTTT+TGG + Chr4:77379150-77379169 None:intergenic 30.0%
! AATAGTCTTTCTTAACTTGG+TGG + Chr4:77379027-77379046 None:intergenic 30.0%
! ACAAACAAGATCTAGGTTTT+GGG + Chr4:77379149-77379168 None:intergenic 30.0%
! ATAGTCTTTCTTAACTTGGT+GGG + Chr4:77379026-77379045 None:intergenic 30.0%
! CACCATAATAGGTTTTTGAT+TGG - Chr4:77379219-77379238 MsG0480022841.01.T01:CDS 30.0%
! CATGTCTTTTTACCCTAAAA+TGG + Chr4:77376654-77376673 None:intergenic 30.0%
! CTATTTTATCAACAAGCTTC+AGG - Chr4:77380429-77380448 MsG0480022841.01.T01:intron 30.0%
! GGCATGATTTATTCAGTTTT+CGG - Chr4:77379477-77379496 MsG0480022841.01.T01:intron 30.0%
! GTTACAAAGGCATATTTAAC+AGG + Chr4:77379345-77379364 None:intergenic 30.0%
! TACCCCTATTTTCATATTTG+TGG - Chr4:77379076-77379095 MsG0480022841.01.T01:CDS 30.0%
! TTAATGCATTGACATGACTT+TGG - Chr4:77379818-77379837 MsG0480022841.01.T01:intron 30.0%
!! ATTTAGGATGATTTGTTCTG+AGG - Chr4:77378000-77378019 MsG0480022841.01.T01:intron 30.0%
!! CTGAAGCTTGTTGATAAAAT+AGG + Chr4:77380431-77380450 None:intergenic 30.0%
!! GATAAAATAGGTTGATTAGC+AGG + Chr4:77380419-77380438 None:intergenic 30.0%
!! TTGGATTTGTTGTAATTCAC+GGG - Chr4:77379837-77379856 MsG0480022841.01.T01:intron 30.0%
!!! AGTATGGTGTTTTAAGTTAG+TGG - Chr4:77378538-77378557 MsG0480022841.01.T01:CDS 30.0%
!!! ATAAGAAGCCTGTTTTGTTT+TGG + Chr4:77378984-77379003 None:intergenic 30.0%
!!! CTTTCATGGTAGATGTTTTT+TGG - Chr4:77379280-77379299 MsG0480022841.01.T01:intron 30.0%
!!! GAGAAAACAATTTTGGTTCA+AGG + Chr4:77378958-77378977 None:intergenic 30.0%
!!! GTTTTTTTTTTGTGATGGTC+GGG - Chr4:77377354-77377373 MsG0480022841.01.T01:intron 30.0%
!!! TGGTAGATGTTTTTTGGATT+TGG - Chr4:77379286-77379305 MsG0480022841.01.T01:intron 30.0%
!!! TTTTTTGGATTTGGTAGAAG+TGG - Chr4:77379295-77379314 MsG0480022841.01.T01:intron 30.0%
AAAACCTTATTGGACCTATC+TGG - Chr4:77379735-77379754 MsG0480022841.01.T01:intron 35.0%
AAACTAAGGAAGGCAAAATG+GGG + Chr4:77379118-77379137 None:intergenic 35.0%
AAAGAGAGAGAGGAAGAAAA+TGG - Chr4:77377551-77377570 MsG0480022841.01.T01:intron 35.0%
AATCCACATTAGACCCATAA+CGG + Chr4:77378795-77378814 None:intergenic 35.0%
ACGTTAAAAAAATACGCACG+TGG - Chr4:77378769-77378788 MsG0480022841.01.T01:intron 35.0%
ACTAATCTGAGCTTATCTTC+AGG + Chr4:77378229-77378248 None:intergenic 35.0%
AGCAATGGTATATTGCTATC+TGG - Chr4:77378304-77378323 MsG0480022841.01.T01:intron 35.0%
AGCTGTAATAATGTCTTTGG+TGG - Chr4:77379983-77380002 MsG0480022841.01.T01:intron 35.0%
ATAAGTGGAACTAATCACCT+AGG + Chr4:77379867-77379886 None:intergenic 35.0%
CACACATTAAGAACGAATGA+AGG + Chr4:77379946-77379965 None:intergenic 35.0%
CCATTAGCAACTAGTTACAA+AGG + Chr4:77379358-77379377 None:intergenic 35.0%
CCATTTAAGAAGCTGATTGA+CGG + Chr4:77377801-77377820 None:intergenic 35.0%
CCTTTGTAACTAGTTGCTAA+TGG - Chr4:77379355-77379374 MsG0480022841.01.T01:intron 35.0%
CGTCAATCAGCTTCTTAAAT+GGG - Chr4:77377799-77377818 MsG0480022841.01.T01:intron 35.0%
CTAAACTAAGGAAGGCAAAA+TGG + Chr4:77379120-77379139 None:intergenic 35.0%
CTATTTGTGGAATCAAGCAA+TGG - Chr4:77378289-77378308 MsG0480022841.01.T01:intron 35.0%
CTCATACAACATGGCAATTA+AGG - Chr4:77376361-77376380 MsG0480022841.01.T01:exon 35.0%
GATGTTTGATTGTACCAGAT+AGG + Chr4:77379752-77379771 None:intergenic 35.0%
GCTAATGAAAGACGTTACAT+TGG - Chr4:77377872-77377891 MsG0480022841.01.T01:intron 35.0%
GGAACAAACTAAACTAAGGA+AGG + Chr4:77379128-77379147 None:intergenic 35.0%
GTTTGGTTGATTGTGCATTA+GGG - Chr4:77378036-77378055 MsG0480022841.01.T01:intron 35.0%
TAACTAGTTGCTAATGGGAT+TGG - Chr4:77379361-77379380 MsG0480022841.01.T01:intron 35.0%
TAAGATGCTTGACAAAGCTA+AGG - Chr4:77377847-77377866 MsG0480022841.01.T01:intron 35.0%
TAAGCTTGCATAAGCTGTAT+TGG - Chr4:77378113-77378132 MsG0480022841.01.T01:intron 35.0%
! ACTATACACTTTTGAGCTTG+AGG - Chr4:77378644-77378663 MsG0480022841.01.T01:intron 35.0%
! AGGTTTAAAACTAGATCGAG+AGG - Chr4:77376381-77376400 MsG0480022841.01.T01:exon 35.0%
! ATAAGTATCGTGAGACTGTT+TGG + Chr4:77378205-77378224 None:intergenic 35.0%
! CACAAAAGGTCACCATTTTA+GGG - Chr4:77376639-77376658 MsG0480022841.01.T01:intron 35.0%
! CACCATTTCTTTTGCACAAA+AGG - Chr4:77376625-77376644 MsG0480022841.01.T01:exon 35.0%
! GACCTTTTGTGCAAAAGAAA+TGG + Chr4:77376630-77376649 None:intergenic 35.0%
! TAAGTATCGTGAGACTGTTT+GGG + Chr4:77378204-77378223 None:intergenic 35.0%
! TCTTAACTTGGTGGGAAAAA+GGG + Chr4:77379018-77379037 None:intergenic 35.0%
! TGGAAACTCTAAAAGGTCAA+AGG - Chr4:77379673-77379692 MsG0480022841.01.T01:intron 35.0%
! TGTCTTTGCACGAAATGTTT+TGG - Chr4:77380157-77380176 MsG0480022841.01.T01:intron 35.0%
! TTCTTAACTTGGTGGGAAAA+AGG + Chr4:77379019-77379038 None:intergenic 35.0%
! TTGGCTGGAGAAAACAATTT+TGG + Chr4:77378965-77378984 None:intergenic 35.0%
! TTTGGTTCAAGGATAGAAGT+GGG + Chr4:77378947-77378966 None:intergenic 35.0%
! TTTTCCGCTAAGAACTATGA+GGG - Chr4:77376866-77376885 MsG0480022841.01.T01:intron 35.0%
! TTTTTCCGCTAAGAACTATG+AGG - Chr4:77376865-77376884 MsG0480022841.01.T01:intron 35.0%
!! AAGATGAAGAGGAGTGTTAT+TGG - Chr4:77379542-77379561 MsG0480022841.01.T01:intron 35.0%
!! ATGATTTGTTCTGAGGAAAC+TGG - Chr4:77378007-77378026 MsG0480022841.01.T01:intron 35.0%
!! TGGATTTGTTGTAATTCACG+GGG - Chr4:77379838-77379857 MsG0480022841.01.T01:intron 35.0%
!!! TTTTGGTTCAAGGATAGAAG+TGG + Chr4:77378948-77378967 None:intergenic 35.0%
ACAGGTGACTAATTACACCA+AGG + Chr4:77379327-77379346 None:intergenic 40.0%
ACGATTAGTGCATGTCTTCA+AGG - Chr4:77380290-77380309 MsG0480022841.01.T01:intron 40.0%
ATAAACATCAACAGCCACGT+AGG - Chr4:77379637-77379656 MsG0480022841.01.T01:intron 40.0%
CAATCAGCTTCTTAAATGGG+AGG - Chr4:77377802-77377821 MsG0480022841.01.T01:intron 40.0%
CCGTCAATCAGCTTCTTAAA+TGG - Chr4:77377798-77377817 MsG0480022841.01.T01:intron 40.0%
CTCTTCATGTACCCAATACT+TGG - Chr4:77378442-77378461 MsG0480022841.01.T01:intron 40.0%
CTGAGAAACATCAGCTTTCA+TGG - Chr4:77379266-77379285 MsG0480022841.01.T01:intron 40.0%
GATGAATTACGACGCATGTA+AGG + Chr4:77377650-77377669 None:intergenic 40.0%
GGTGGGACAAAAAACCTTAT+TGG - Chr4:77379725-77379744 MsG0480022841.01.T01:intron 40.0%
GTTCAGTTCACTGAACAGAA+CGG - Chr4:77376824-77376843 MsG0480022841.01.T01:intron 40.0%
TAAATGTTGTGTTGTGCGAG+TGG - Chr4:77379519-77379538 MsG0480022841.01.T01:intron 40.0%
TCATGTACCCAATACTTGGA+GGG - Chr4:77378446-77378465 MsG0480022841.01.T01:intron 40.0%
TGAGAAAGAGAAAGAGAGAG+AGG - Chr4:77377541-77377560 MsG0480022841.01.T01:intron 40.0%
TGCAATTGTGTTAGATCCGT+GGG - Chr4:77377742-77377761 MsG0480022841.01.T01:intron 40.0%
TGGATTAAACGACTCTGATG+TGG - Chr4:77378809-77378828 MsG0480022841.01.T01:intron 40.0%
TGGTGGGAAAAAGGGAAAAT+TGG + Chr4:77379010-77379029 None:intergenic 40.0%
TGTACCAGATAGGTCCAATA+AGG + Chr4:77379742-77379761 None:intergenic 40.0%
TTCATGTACCCAATACTTGG+AGG - Chr4:77378445-77378464 MsG0480022841.01.T01:intron 40.0%
TTCTCCAGCCAAAACAAAAC+AGG - Chr4:77378973-77378992 MsG0480022841.01.T01:CDS 40.0%
TTGCAATTGTGTTAGATCCG+TGG - Chr4:77377741-77377760 MsG0480022841.01.T01:intron 40.0%
TTGGTTCAAGGATAGAAGTG+GGG + Chr4:77378946-77378965 None:intergenic 40.0%
! GCACAAAAGGTCACCATTTT+AGG - Chr4:77376638-77376657 MsG0480022841.01.T01:intron 40.0%
! GGTTTGGTTGATTGTGCATT+AGG - Chr4:77378035-77378054 MsG0480022841.01.T01:intron 40.0%
!! AAGAGGAGTGTTATTGGAGA+AGG - Chr4:77379548-77379567 MsG0480022841.01.T01:intron 40.0%
!! ACTTGCTATGCAGAAGAGTA+TGG - Chr4:77378522-77378541 MsG0480022841.01.T01:CDS 40.0%
!! AGAGGAGTGTTATTGGAGAA+GGG - Chr4:77379549-77379568 MsG0480022841.01.T01:intron 40.0%
!! GTTCTGAGGAAACTGGAATT+GGG - Chr4:77378014-77378033 MsG0480022841.01.T01:intron 40.0%
!! TGCTTTGGATGTGGTGTTTT+TGG - Chr4:77380205-77380224 MsG0480022841.01.T01:intron 40.0%
!! TGTTCTGAGGAAACTGGAAT+TGG - Chr4:77378013-77378032 MsG0480022841.01.T01:intron 40.0%
!!! GTGTTTTAAGTTAGTGGCGT+GGG - Chr4:77378544-77378563 MsG0480022841.01.T01:CDS 40.0%
!!! TAAGGTTTTTTGTCCCACCT+AGG + Chr4:77379724-77379743 None:intergenic 40.0%
AAGTGCGGGAAACTAAACGT+GGG + Chr4:77376409-77376428 None:intergenic 45.0%
ATTGTGCATTAGGGCCTGTT+TGG - Chr4:77378045-77378064 MsG0480022841.01.T01:intron 45.0%
CATGTACCCAATACTTGGAG+GGG - Chr4:77378447-77378466 MsG0480022841.01.T01:intron 45.0%
GAGGAAACTGGAATTGGGTT+TGG - Chr4:77378019-77378038 MsG0480022841.01.T01:intron 45.0%
GCTTCTGTAGCTGAATGCTT+TGG - Chr4:77380190-77380209 MsG0480022841.01.T01:intron 45.0%
GGTAGAAGTGGTTACATCCT+TGG - Chr4:77379307-77379326 MsG0480022841.01.T01:intron 45.0%
TCTGAGTCCCCAACCTAATA+AGG + Chr4:77377601-77377620 None:intergenic 45.0%
TGTAATTCACGGGGAAACCT+AGG - Chr4:77379847-77379866 MsG0480022841.01.T01:intron 45.0%
TTGAGCTTGAGGTCGATACT+AGG - Chr4:77378655-77378674 MsG0480022841.01.T01:intron 45.0%
! GTAGCTGAATGCTTTGGATG+TGG - Chr4:77380196-77380215 MsG0480022841.01.T01:intron 45.0%
!! ATCGGAGCCTTATTAGGTTG+GGG - Chr4:77377591-77377610 MsG0480022841.01.T01:intron 45.0%
!! GATCGGAGCCTTATTAGGTT+GGG - Chr4:77377590-77377609 MsG0480022841.01.T01:intron 45.0%
!! TCAGTTTTCGGTGTGAGTGA+TGG - Chr4:77379489-77379508 MsG0480022841.01.T01:intron 45.0%
!!! CACGTTTTGGGAATGGGATT+GGG - Chr4:77377767-77377786 MsG0480022841.01.T01:intron 45.0%
!!! GAAGCCTGTTTTGTTTTGGC+TGG + Chr4:77378980-77378999 None:intergenic 45.0%
!!! GGTGTTTTAAGTTAGTGGCG+TGG - Chr4:77378543-77378562 MsG0480022841.01.T01:CDS 45.0%
!! ATAATTATTTAACTATTATT+AGG - Chr4:77377456-77377475 MsG0480022841.01.T01:intron 5.0%
!! TAATTATTTAACTATTATTA+GGG - Chr4:77377457-77377476 MsG0480022841.01.T01:intron 5.0%
!!! TTACAAATTTATTATAATTT+TGG + Chr4:77376685-77376704 None:intergenic 5.0%
!!! TTTTTTAAAACAAAAAATAT+GGG + Chr4:77376525-77376544 None:intergenic 5.0%
!!! TTTTTTTAAAACAAAAAATA+TGG + Chr4:77376526-77376545 None:intergenic 5.0%
AAATACGCACGTGGCCGTTA+TGG - Chr4:77378778-77378797 MsG0480022841.01.T01:intron 50.0%
AAGGATTGCGTTGCAGCAGT+TGG - Chr4:77380309-77380328 MsG0480022841.01.T01:intron 50.0%
AATACGCACGTGGCCGTTAT+GGG - Chr4:77378779-77378798 MsG0480022841.01.T01:intron 50.0%
ACACTGCCCCTCCAAGTATT+GGG + Chr4:77378456-77378475 None:intergenic 50.0%
AGATGTACTCCAACGCTCTC+AGG - Chr4:77377618-77377637 MsG0480022841.01.T01:intron 50.0%
ATTCCCAAAACGTGCTCCCA+CGG + Chr4:77377761-77377780 None:intergenic 50.0%
GAAGTGCGGGAAACTAAACG+TGG + Chr4:77376410-77376429 None:intergenic 50.0%
GCCACCCTCATAGTTCTTAG+CGG + Chr4:77376873-77376892 None:intergenic 50.0%
TACACTGCCCCTCCAAGTAT+TGG + Chr4:77378457-77378476 None:intergenic 50.0%
TCCGCTAAGAACTATGAGGG+TGG - Chr4:77376869-77376888 MsG0480022841.01.T01:intron 50.0%
TGGCCGTTATGGGTCTAATG+TGG - Chr4:77378789-77378808 MsG0480022841.01.T01:intron 50.0%
TGTGCGAGTGGAAGATGAAG+AGG - Chr4:77379531-77379550 MsG0480022841.01.T01:intron 50.0%
! AGGAAGTTTCCTGAGAGCGT+TGG + Chr4:77377630-77377649 None:intergenic 50.0%
! GAAAATGGTGCTAAGCGCGA+CGG - Chr4:77377566-77377585 MsG0480022841.01.T01:intron 50.0%
!! CGATCGGAGCCTTATTAGGT+TGG - Chr4:77377589-77377608 MsG0480022841.01.T01:intron 50.0%
!!! GCACGTTTTGGGAATGGGAT+TGG - Chr4:77377766-77377785 MsG0480022841.01.T01:intron 50.0%
!!! TGGGAGCACGTTTTGGGAAT+GGG - Chr4:77377761-77377780 MsG0480022841.01.T01:intron 50.0%
AGTTAGTGGCGTGGGTAACG+TGG - Chr4:77378552-77378571 MsG0480022841.01.T01:CDS 55.0%
!! ACGGCGATCGGAGCCTTATT+AGG - Chr4:77377585-77377604 MsG0480022841.01.T01:intron 55.0%
!! AGATCCGTGGGAGCACGTTT+TGG - Chr4:77377754-77377773 MsG0480022841.01.T01:intron 55.0%
!! GATCCGTGGGAGCACGTTTT+GGG - Chr4:77377755-77377774 MsG0480022841.01.T01:intron 55.0%
!!! GTGGGAGCACGTTTTGGGAA+TGG - Chr4:77377760-77377779 MsG0480022841.01.T01:intron 55.0%
! GGGAATGGGATTGGGCGTTG+TGG - Chr4:77377775-77377794 MsG0480022841.01.T01:intron 60.0%
GTGCTAAGCGCGACGGCGAT+CGG - Chr4:77377573-77377592 MsG0480022841.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 77376341 77380512 77376341 ID=MsG0480022841.01;
Chr4 mRNA 77376341 77380512 77376341 ID=MsG0480022841.01.T01;Parent=MsG0480022841.01
Chr4 exon 77376341 77376653 77376341 ID=MsG0480022841.01.T01.exon;Parent=MsG0480022841.01.T01
Chr4 exon 77378483 77378620 77378483 ID=MsG0480022841.01.T01.exon;Parent=MsG0480022841.01.T01
Chr4 CDS 77378496 77378620 77378496 ID=MsG0480022841.01.T01.cds;Parent=MsG0480022841.01.T01
Chr4 CDS 77378960 77379097 77378960 ID=MsG0480022841.01.T01.cds;Parent=MsG0480022841.01.T01
Chr4 exon 77378960 77379097 77378960 ID=MsG0480022841.01.T01.exon;Parent=MsG0480022841.01.T01
Chr4 CDS 77379194 77379272 77379194 ID=MsG0480022841.01.T01.cds;Parent=MsG0480022841.01.T01
Chr4 exon 77379194 77379272 77379194 ID=MsG0480022841.01.T01.exon;Parent=MsG0480022841.01.T01
Chr4 CDS 77380471 77380482 77380471 ID=MsG0480022841.01.T01.cds;Parent=MsG0480022841.01.T01
Chr4 exon 77380471 77380512 77380471 ID=MsG0480022841.01.T01.exon;Parent=MsG0480022841.01.T01
Gene Sequence

>MsG0480022841.01.T01

ATGGCAATTAAGCGCGACGGCGATCGGAGCCTTATTAGGTTGGGGACTCAGATGTACTCCAACGCTCTCAGGAAACTTCCTTACATGCGTCATCCGTGGGAGCACGTTTTGGGAATGGGATTGGGCGTTGTGGCCGTCAATCAGCTTCTTAAATGGGAGGCTCAAGTTGAACAAGATCTTGATAAGATGCTTGACAAAGCTAAGGCCGCTAATGAAAGACGTTACATTGATAAGCTCAGATTAGTCAATCCAAACTTATCAGAAGATAAACTTATGGAAGAGAATCTATTTGTGGAATCAAGCAATGGTATATTGCTATCTGGCATTAGAAATTTAGGTGTTGAAAGAAGATGA
Protein sequence

>MsG0480022841.01.T01

MAIKRDGDRSLIRLGTQMYSNALRKLPYMRHPWEHVLGMGLGVVAVNQLLKWEAQVEQDLDKMLDKAKAANERRYIDKLRLVNPNLSEDKLMEENLFVESSNGILLSGIRNLGVERR*