AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022853.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022853.01.T01 MTR_4g114040 57.851 121 34 1 25 145 7 110 1.15e-42 163
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022853.01.T01 AT2G02160 40.032 627 283 28 3 596 5 571 2.63e-105 335

Find 217 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGAGTCCTTCTTTCTATT+TGG 0.122370 4:-77559212 None:intergenic
ATTTGGGCTGATCCCTTTCT+AGG 0.173898 4:-77559195 None:intergenic
GAGAGAGCCGCCACAGAAAT+TGG 0.190492 4:-77556922 None:intergenic
GATCCATCGATCTCTTCTTC+TGG 0.192710 4:+77556985 MsG0480022853.01.T01:five_prime_UTR
GAATGTGATGATGGGCTTTA+AGG 0.209581 4:-77556828 None:intergenic
AGAATTTCACTAAGTGGTTT+TGG 0.245906 4:-77559786 None:intergenic
TATTAACTCTCTAACGTTAC+AGG 0.259234 4:-77560411 None:intergenic
TATCATGGGGAAGATGAATT+TGG 0.267482 4:+77559009 MsG0480022853.01.T01:CDS
GCTTGTTTACTACCATTATA+AGG 0.280011 4:-77558475 None:intergenic
TTTCTCAGAGAGTCGTCTCC+TGG 0.281678 4:+77558943 MsG0480022853.01.T01:CDS
CCTCTTCTCAGATTGAGATT+TGG 0.282214 4:+77556963 MsG0480022853.01.T01:five_prime_UTR
AGTCTTGCTGAACTTAAGTA+TGG 0.284200 4:+77559669 MsG0480022853.01.T01:CDS
ATGAGTCCTTCTTTCTATTT+GGG 0.297001 4:-77559211 None:intergenic
TTCTCCCTTGACATGCAAAA+AGG 0.299512 4:+77557127 MsG0480022853.01.T01:CDS
TCCTCTTTCCAAATGATTGT+TGG 0.310747 4:-77559713 None:intergenic
ATCCATCGATCTCTTCTTCT+GGG 0.318828 4:+77556986 MsG0480022853.01.T01:five_prime_UTR
TTGGAAAGAGGAAAAGCTTC+AGG 0.319306 4:+77559724 MsG0480022853.01.T01:CDS
ATCGATCTCTTCTTCTGGGT+TGG 0.324812 4:+77556990 MsG0480022853.01.T01:five_prime_UTR
CAGCCTCTTGACGGGTTGTT+AGG 0.337201 4:+77558370 MsG0480022853.01.T01:intron
CAACACCTGCAACATTTGCT+TGG 0.342566 4:-77558696 None:intergenic
CCAAAAGGTTTCTTAAAACT+TGG 0.344005 4:-77558637 None:intergenic
TCGATCTCTTCTTCTGGGTT+GGG 0.344716 4:+77556991 MsG0480022853.01.T01:five_prime_UTR
AAGAACAACACCAATCTTCT+TGG 0.345542 4:-77560147 None:intergenic
ACCCATGCACCGCCTTATAA+TGG 0.352929 4:+77558463 MsG0480022853.01.T01:CDS
GGAAGAAGAGTCCAAGATTC+AGG 0.353435 4:+77559917 MsG0480022853.01.T01:CDS
CCGGCAACTGCTGCTGCTGC+TGG 0.354940 4:+77558400 MsG0480022853.01.T01:CDS
GCCGTTTCCCTTCCTGCGCT+TGG 0.358186 4:-77559289 None:intergenic
ATCAGTGGCCGGTTGTCATC+TGG 0.358804 4:+77559522 MsG0480022853.01.T01:CDS
TCGTATTCATTCAAAGAGTC+TGG 0.359110 4:-77559060 None:intergenic
AGAAATTCTGATTACTATCA+TGG 0.361394 4:+77558994 MsG0480022853.01.T01:CDS
AGAGTAAGAGAATGTGATGA+TGG 0.369394 4:-77556837 None:intergenic
TTAAGCATGTAGGCCTCAAC+TGG 0.379353 4:+77560269 MsG0480022853.01.T01:three_prime_UTR
TTACTGCCATTGGTAGGGTT+TGG 0.386685 4:-77558565 None:intergenic
AATAATGACCAACAATCATT+TGG 0.389220 4:+77559705 MsG0480022853.01.T01:CDS
CGTCATTGTCCTTACCACTA+TGG 0.395917 4:-77558918 None:intergenic
ATCTCTCATTTGAAGGCAAC+TGG 0.399075 4:-77559374 None:intergenic
ATCCTAGAGATTGTTGGTAT+TGG 0.401206 4:+77558172 MsG0480022853.01.T01:CDS
TTTCTAGGTTCCCAGCCATA+TGG 0.401770 4:-77559180 None:intergenic
ATCATATGAGTCATAACCTT+GGG 0.402504 4:-77559145 None:intergenic
TCCATCAGCAGCCTGAATCT+TGG 0.402576 4:-77559928 None:intergenic
CTATGGAAATTGTGATCATC+TGG 0.404436 4:-77558901 None:intergenic
AAGTTTCTCCTCTCGTCATC+TGG 0.405913 4:-77559600 None:intergenic
CGATGAAGCTGCCGAAGATC+AGG 0.408429 4:+77560004 MsG0480022853.01.T01:CDS
AAATCAAGAGCAAGAATATA+TGG 0.412298 4:+77560100 MsG0480022853.01.T01:CDS
GTACATCATCTTCATATTGT+TGG 0.423888 4:-77559752 None:intergenic
TTGACGGATCTCTCATTTGA+AGG 0.431022 4:-77559381 None:intergenic
TAAAACAAGTAAGCGTGGTT+TGG 0.434567 4:-77556805 None:intergenic
AGGATCCAGGATAGATTAAG+AGG 0.436261 4:+77559570 MsG0480022853.01.T01:CDS
ACTTCCCAAGCAAATGTTGC+AGG 0.436467 4:+77558691 MsG0480022853.01.T01:CDS
ATTGGTTGGCGGTGGAGAAC+TGG 0.437841 4:-77558836 None:intergenic
ACCTTCATACTCCTGATCTT+CGG 0.437886 4:-77560015 None:intergenic
GAAGATGATGTACCATTTGA+AGG 0.438650 4:+77559762 MsG0480022853.01.T01:CDS
GAATCTGAAGTTGTGGCTGT+TGG 0.444668 4:-77557031 None:intergenic
ACCTTCCTCTTAATCTATCC+TGG 0.445108 4:-77559575 None:intergenic
AACACCTGCAACATTTGCTT+GGG 0.445165 4:-77558695 None:intergenic
TCCTTCAGAATTTCACTAAG+TGG 0.448374 4:-77559792 None:intergenic
AGGTGACTGTCACCACCATT+TGG 0.450256 4:-77559435 None:intergenic
GAAATTCTGATTACTATCAT+GGG 0.451701 4:+77558995 MsG0480022853.01.T01:CDS
GTCCCTCTCTAGGTGACTGC+TGG 0.452700 4:-77559484 None:intergenic
ACACGATTAGACCGGGCATT+AGG 0.453044 4:-77558862 None:intergenic
GATTGTTGGTATTGGTTGAA+TGG 0.456384 4:+77558180 MsG0480022853.01.T01:CDS
ATCTGTGGCGTGGGGACAGA+TGG 0.457178 4:-77558424 None:intergenic
TAAGTTAAAGAGACAATATA+AGG 0.459796 4:-77560231 None:intergenic
ATATGGCTGGGAACCTAGAA+AGG 0.461958 4:+77559182 MsG0480022853.01.T01:CDS
CGGATGACGGAATGAACACT+TGG 0.466296 4:-77558217 None:intergenic
CTCAAGATGAAGCCTTGAAA+AGG 0.468804 4:+77557078 MsG0480022853.01.T01:CDS
AATATATGGAAGATGAAGAT+GGG 0.468862 4:+77560114 MsG0480022853.01.T01:CDS
AGAGAGCCGCCACAGAAATT+GGG 0.468937 4:-77556921 None:intergenic
AACTTGGATTCTCAGCTCCT+TGG 0.469416 4:-77558621 None:intergenic
AATCTGAAGTTGTGGCTGTT+GGG 0.469633 4:-77557030 None:intergenic
TGACTCTAGCATACTCACTA+TGG 0.470886 4:-77558149 None:intergenic
AGTTCTCCACCGCCAACCAA+TGG 0.471253 4:+77558838 MsG0480022853.01.T01:CDS
TCTGAGACCTCAACACTGTC+AGG 0.480290 4:-77559249 None:intergenic
GCATTAGGCCCATTGGTTGG+CGG 0.480720 4:-77558847 None:intergenic
AGAATAAATCTTCCACCAAA+TGG 0.481461 4:+77559420 MsG0480022853.01.T01:CDS
AATGAAGGAATTACCGAAAA+CGG 0.483376 4:+77559876 MsG0480022853.01.T01:CDS
CATGTACCGCCACCACCTGC+AGG 0.483658 4:+77558781 MsG0480022853.01.T01:CDS
GATGACTTTGCCAAGAAGAT+TGG 0.484215 4:+77560137 MsG0480022853.01.T01:CDS
GCCTCATGAGGGAAGGATCC+AGG 0.484648 4:+77559557 MsG0480022853.01.T01:CDS
TACCATTATAAGGCGGTGCA+TGG 0.485504 4:-77558465 None:intergenic
CAACCAATGGGCCTAATGCC+CGG 0.485721 4:+77558851 MsG0480022853.01.T01:CDS
GTTCTCCACCGCCAACCAAT+GGG 0.486313 4:+77558839 MsG0480022853.01.T01:CDS
TTAGGCCCATTGGTTGGCGG+TGG 0.486496 4:-77558844 None:intergenic
TTCTCAGAGAGTCGTCTCCT+GGG 0.488365 4:+77558944 MsG0480022853.01.T01:CDS
GAAATTCTGAAGGAGAAGAA+AGG 0.491627 4:+77559801 MsG0480022853.01.T01:CDS
TCCAAGCGCAGGAAGGGAAA+CGG 0.492405 4:+77559288 MsG0480022853.01.T01:CDS
GAATATATGGAAGATGAAGA+TGG 0.492589 4:+77560113 MsG0480022853.01.T01:CDS
GCCTCGGAAACGATTATTGA+CGG 0.493252 4:-77559397 None:intergenic
CAAGTGTTCATTCCGTCATC+CGG 0.493411 4:+77558218 MsG0480022853.01.T01:CDS
TTTACATGCAGCCTCTTGAC+GGG 0.494749 4:+77558362 MsG0480022853.01.T01:intron
GTCATCATGTTTGCTACTGT+GGG 0.496484 4:-77559847 None:intergenic
TGGATTCTCAGCTCCTTGGT+TGG 0.496891 4:-77558617 None:intergenic
TGGTAGGGTTTGGTCCATGC+AGG 0.497954 4:-77558555 None:intergenic
TCCAAGATTCAGGCTGCTGA+TGG 0.498699 4:+77559927 MsG0480022853.01.T01:CDS
GAAGCCTTCCAGATGACAAC+CGG 0.499100 4:-77559530 None:intergenic
CTGGGTTGGGTTGTTCGCCA+TGG 0.501508 4:+77557004 MsG0480022853.01.T01:exon
AAGGCTTCATCTTGAGGAGA+AGG 0.502963 4:-77557071 None:intergenic
TTATCTAACCCTGCAGGTGG+TGG 0.503622 4:-77558790 None:intergenic
TCATCTTGAGGAGAAGGTGT+TGG 0.504643 4:-77557065 None:intergenic
TGGAAAGAGGAAAAGCTTCA+GGG 0.504669 4:+77559725 MsG0480022853.01.T01:CDS
CTGAAGGAGAAGAAAGGAGT+TGG 0.505461 4:+77559807 MsG0480022853.01.T01:CDS
GTATGAGTATGAACAAGTTG+AGG 0.507239 4:+77560073 MsG0480022853.01.T01:CDS
GAGAAGAGGAGAAGAAGTAG+AGG 0.508002 4:-77556949 None:intergenic
TCTTTGAATGAATACGATGT+AGG 0.510886 4:+77559066 MsG0480022853.01.T01:CDS
AAAGGAGTTGGAGCTGGTGC+AGG 0.510993 4:+77559819 MsG0480022853.01.T01:CDS
CATGATGACAATAAGAATGA+AGG 0.513449 4:+77559861 MsG0480022853.01.T01:CDS
GAGTAAGAGAATGTGATGAT+GGG 0.516605 4:-77556836 None:intergenic
AGACCGGGCATTAGGCCCAT+TGG 0.518925 4:-77558854 None:intergenic
ACCAACAATCATTTGGAAAG+AGG 0.519008 4:+77559712 MsG0480022853.01.T01:CDS
TGTCATCATGTTTGCTACTG+TGG 0.520700 4:-77559848 None:intergenic
TCTAACCCTGCAGGTGGTGG+CGG 0.521071 4:-77558787 None:intergenic
CTTTGAATGAATACGATGTA+GGG 0.521877 4:+77559067 MsG0480022853.01.T01:CDS
CGGAACATTGTCAGAGAGCA+AGG 0.523049 4:+77559896 MsG0480022853.01.T01:CDS
GATCACATGCAAGAGCCATA+TGG 0.523697 4:+77559165 MsG0480022853.01.T01:CDS
GAGTCAATCCTAGAGATTGT+TGG 0.524919 4:+77558166 MsG0480022853.01.T01:CDS
TATGAGTATGAACAAGTTGA+GGG 0.525313 4:+77560074 MsG0480022853.01.T01:CDS
GTTGCCGCAATCTGTGGCGT+GGG 0.527866 4:-77558433 None:intergenic
ACATGCAAGAGCCATATGGC+TGG 0.534478 4:+77559169 MsG0480022853.01.T01:CDS
GCAGCAGCAGCAGTTGCCGG+TGG 0.534503 4:-77558397 None:intergenic
GCCTCATTATCTAACCCTGC+AGG 0.535034 4:-77558796 None:intergenic
GTGGAAGATTTATTCTGCCT+CGG 0.535587 4:-77559413 None:intergenic
ACCTGCAGGGTTAGATAATG+AGG 0.535845 4:+77558795 MsG0480022853.01.T01:CDS
GCTTCCATCATATCAACTAA+AGG 0.541333 4:-77560461 None:intergenic
GAGAAGAAAGGAGTTGGAGC+TGG 0.544404 4:+77559813 MsG0480022853.01.T01:CDS
CTCTGTCCAAGTCCCTCTCT+AGG 0.544981 4:-77559494 None:intergenic
CGTTTATCCAAGCGCAGGAA+GGG 0.547030 4:+77559282 MsG0480022853.01.T01:CDS
ACCATTATAAGGCGGTGCAT+GGG 0.548023 4:-77558464 None:intergenic
GATGATCACAATTTCCATAG+TGG 0.554285 4:+77558904 MsG0480022853.01.T01:CDS
TGGCAGTAAAATAGCTACAC+AGG 0.556312 4:+77558579 MsG0480022853.01.T01:CDS
AGCAAGAAAGTAGACACAAT+CGG 0.559051 4:-77557105 None:intergenic
GATCGAATGAGGACCGAAGT+GGG 0.559665 4:+77559631 MsG0480022853.01.T01:CDS
TCCAGGATAGATTAAGAGGA+AGG 0.562641 4:+77559574 MsG0480022853.01.T01:CDS
CGGGCATTAGGCCCATTGGT+TGG 0.564557 4:-77558850 None:intergenic
CTCTGTCTAAGTCCCTCTCT+AGG 0.564616 4:-77559455 None:intergenic
TCCTGGATCCTTCCCTCATG+AGG 0.568928 4:-77559558 None:intergenic
GAACCAGCAGTCACCTAGAG+AGG 0.569215 4:+77559481 MsG0480022853.01.T01:CDS
TGTCCCCACGCCACAGATTG+CGG 0.569632 4:+77558429 MsG0480022853.01.T01:CDS
TGACTGTCACCACCATTTGG+TGG 0.569677 4:-77559432 None:intergenic
CGTATTCATTCAAAGAGTCT+GGG 0.569875 4:-77559059 None:intergenic
GACAGATGTGCCTTCCTGCA+TGG 0.570126 4:+77558541 MsG0480022853.01.T01:CDS
CCAAATCTCAATCTGAGAAG+AGG 0.573248 4:-77556963 None:intergenic
TTGAAAGAAAATGCAAGGCA+CGG 0.577753 4:-77558497 None:intergenic
CTTCAGCAGTCGATCGAATG+AGG 0.577765 4:+77559620 MsG0480022853.01.T01:CDS
TGTTGCCGCAATCTGTGGCG+TGG 0.581148 4:-77558434 None:intergenic
CAAAGAAACTCACCGGATGA+CGG 0.581589 4:-77558230 None:intergenic
GACAGATATTACCCCAGTTG+AGG 0.582522 4:-77560282 None:intergenic
GCAGATGTTGCCGCAATCTG+TGG 0.582954 4:-77558439 None:intergenic
TCGTTTATCCAAGCGCAGGA+AGG 0.583309 4:+77559281 MsG0480022853.01.T01:CDS
GATCAGCCCAAATAGAAAGA+AGG 0.583430 4:+77559205 MsG0480022853.01.T01:CDS
GATGAATTTGGTAAAACAAG+AGG 0.583764 4:+77559021 MsG0480022853.01.T01:CDS
TCACAATTTCCATAGTGGTA+AGG 0.586818 4:+77558909 MsG0480022853.01.T01:CDS
TTGTGGCTGTTGGGCAACCA+TGG 0.587839 4:-77557021 None:intergenic
TCGTAGTCCTGACAGTGTTG+AGG 0.587874 4:+77559242 MsG0480022853.01.T01:CDS
GTTGATGCACACGATTAGAC+CGG 0.589529 4:-77558870 None:intergenic
TTCAATCGCCTCATGAGGGA+AGG 0.590666 4:+77559550 MsG0480022853.01.T01:CDS
GATCATATGAGTCATAACCT+TGG 0.590754 4:-77559146 None:intergenic
CAGTCACCTAGAGAGGGACT+TGG 0.591478 4:+77559488 MsG0480022853.01.T01:CDS
AAGGCTTCAATCGCCTCATG+AGG 0.592807 4:+77559545 MsG0480022853.01.T01:CDS
ATCTGTCGTCGCTCATGATG+AGG 0.592954 4:+77559317 MsG0480022853.01.T01:CDS
ACCACTTAGTGAAATTCTGA+AGG 0.593072 4:+77559791 MsG0480022853.01.T01:CDS
AACCAATACCAACAATCTCT+AGG 0.593370 4:-77558174 None:intergenic
CGATCGAATGAGGACCGAAG+TGG 0.593485 4:+77559630 MsG0480022853.01.T01:CDS
GACATCGTTTATCCAAGCGC+AGG 0.594290 4:+77559277 MsG0480022853.01.T01:CDS
GTCTTGCTGAACTTAAGTAT+GGG 0.596178 4:+77559670 MsG0480022853.01.T01:CDS
GATCAGGAGTATGAAGGTGA+AGG 0.597456 4:+77560020 MsG0480022853.01.T01:CDS
GCCGAAGATCAGGAGTATGA+AGG 0.599647 4:+77560014 MsG0480022853.01.T01:CDS
TCTCTACCCAATTTCTGTGG+CGG 0.599837 4:+77556915 MsG0480022853.01.T01:five_prime_UTR
CATGCAAGAGCCATATGGCT+GGG 0.599944 4:+77559170 MsG0480022853.01.T01:CDS
CACGGTCAATCATCTGAGGA+AGG 0.602447 4:+77559972 MsG0480022853.01.T01:CDS
CTAGAGAGGGACTTGGACAG+AGG 0.604960 4:+77559495 MsG0480022853.01.T01:CDS
CGGGTTGTTAGGAACACCAC+CGG 0.605352 4:+77558381 MsG0480022853.01.T01:CDS
TGAATATGAGCAAGGTGATG+AGG 0.606447 4:+77560049 MsG0480022853.01.T01:CDS
GTTCCTAACAACCCGTCAAG+AGG 0.607813 4:-77558373 None:intergenic
TATGGCTGGGAACCTAGAAA+GGG 0.609578 4:+77559183 MsG0480022853.01.T01:CDS
ATCATGTTTGCTACTGTGGG+AGG 0.610033 4:-77559844 None:intergenic
GATAGATTTCGTGTGCCCCA+AGG 0.610131 4:+77559129 MsG0480022853.01.T01:CDS
ACAAGAGGTCAAGATGAAAG+AGG 0.612476 4:+77559036 MsG0480022853.01.T01:CDS
ATATATGGAAGATGAAGATG+GGG 0.612975 4:+77560115 MsG0480022853.01.T01:CDS
CTCTCTCTACCCAATTTCTG+TGG 0.614772 4:+77556912 MsG0480022853.01.T01:five_prime_UTR
TAAGCATGTAGGCCTCAACT+GGG 0.615366 4:+77560270 MsG0480022853.01.T01:three_prime_UTR
GACAATACTGATGTAACTCA+CGG 0.620169 4:+77559954 MsG0480022853.01.T01:CDS
TTGCTGAACTTAAGTATGGG+AGG 0.621411 4:+77559673 MsG0480022853.01.T01:CDS
GTGGTGACAGTCACCTAGAG+AGG 0.623462 4:+77559442 MsG0480022853.01.T01:CDS
ACAGAGGAAGAATCAGTGGC+CGG 0.626828 4:+77559511 MsG0480022853.01.T01:CDS
TTGTGATCATCTGGCAAACG+AGG 0.626895 4:-77558892 None:intergenic
TCCGTCAATAATCGTTTCCG+AGG 0.626973 4:+77559396 MsG0480022853.01.T01:CDS
TTGGCGCAGAGAACCCACTT+CGG 0.629325 4:-77559644 None:intergenic
GGCAGTAAAATAGCTACACA+GGG 0.630874 4:+77558580 MsG0480022853.01.T01:CDS
AGGGTTTGGTCCATGCAGGA+AGG 0.631683 4:-77558551 None:intergenic
AACCCAGAAGAAGAGATCGA+TGG 0.631981 4:-77556988 None:intergenic
AACCAGCAGTCACCTAGAGA+GGG 0.636906 4:+77559482 MsG0480022853.01.T01:CDS
TAAGGTAAAACAAGTAAGCG+TGG 0.639199 4:-77556810 None:intergenic
GAAGGTTGCCAGATGACGAG+AGG 0.639411 4:+77559592 MsG0480022853.01.T01:CDS
CTAGAGAGGGACTTAGACAG+AGG 0.639929 4:+77559456 MsG0480022853.01.T01:CDS
GGATGACGGAATGAACACTT+GGG 0.640470 4:-77558216 None:intergenic
AGGCTTCAATCGCCTCATGA+GGG 0.642774 4:+77559546 MsG0480022853.01.T01:CDS
ATGTACCGCCACCACCTGCA+GGG 0.643731 4:+77558782 MsG0480022853.01.T01:CDS
AAATTCTGATTACTATCATG+GGG 0.645440 4:+77558996 MsG0480022853.01.T01:CDS
TTGCCGCAATCTGTGGCGTG+GGG 0.646254 4:-77558432 None:intergenic
GTGGCCGGTTGTCATCTGGA+AGG 0.646666 4:+77559526 MsG0480022853.01.T01:CDS
CATGGACCAAACCCTACCAA+TGG 0.648418 4:+77558559 MsG0480022853.01.T01:CDS
ATAAATCTTCCACCAAATGG+TGG 0.648459 4:+77559423 MsG0480022853.01.T01:CDS
TTGGACAGAGGAAGAATCAG+TGG 0.649407 4:+77559507 MsG0480022853.01.T01:CDS
GGAGACTATGAATATGAGCA+AGG 0.650461 4:+77560041 MsG0480022853.01.T01:CDS
TTGATGCACACGATTAGACC+GGG 0.654044 4:-77558869 None:intergenic
TGCGCTTGGATAAACGATGT+CGG 0.656360 4:-77559275 None:intergenic
AACTCACGGTCAATCATCTG+AGG 0.657007 4:+77559968 MsG0480022853.01.T01:CDS
TCAATGACAATGACCAACCA+AGG 0.673022 4:+77558604 MsG0480022853.01.T01:CDS
TGAGTCTGAATCTGAAGTTG+TGG 0.677604 4:-77557038 None:intergenic
TGGTGACAGTCACCTAGAGA+GGG 0.684816 4:+77559443 MsG0480022853.01.T01:CDS
TCATTATCTAACCCTGCAGG+TGG 0.685323 4:-77558793 None:intergenic
TGTTTACTACCATTATAAGG+CGG 0.686484 4:-77558472 None:intergenic
TCATATGAGTCATAACCTTG+GGG 0.704228 4:-77559144 None:intergenic
CTCTAGCATACTCACTATGG+CGG 0.707134 4:-77558146 None:intergenic
GCTACAAGAACATCAAACCC+AGG 0.714968 4:-77558961 None:intergenic
AAGCATGTAGGCCTCAACTG+GGG 0.762858 4:+77560271 MsG0480022853.01.T01:three_prime_UTR
GCAGTAAAATAGCTACACAG+GGG 0.802739 4:+77558581 MsG0480022853.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTTAATAATAATA+GGG - Chr4:77557780-77557799 None:intergenic 0.0%
!! ATAATTGATAAAGAAAAAAA+GGG - Chr4:77557184-77557203 None:intergenic 10.0%
!! TATAATTGATAAAGAAAAAA+AGG - Chr4:77557185-77557204 None:intergenic 10.0%
!!! AAATTTAATTTTGATTAATG+GGG + Chr4:77557274-77557293 MsG0480022853.01.T01:intron 10.0%
!!! TTTATCAATTATATCTTTTA+GGG + Chr4:77557192-77557211 MsG0480022853.01.T01:intron 10.0%
!! CATAACTCAATTAAAATAAA+AGG - Chr4:77558274-77558293 None:intergenic 15.0%
!!! CTTTATCAATTATATCTTTT+AGG + Chr4:77557191-77557210 MsG0480022853.01.T01:intron 15.0%
!!! TTGTTCTTTCATAATTTTTA+TGG + Chr4:77560162-77560181 MsG0480022853.01.T01:exon 15.0%
!! AATACTCTAAACTTAATGAA+AGG - Chr4:77557689-77557708 None:intergenic 20.0%
!! ACAGAAAAATATGTTTAAGT+TGG + Chr4:77558753-77558772 MsG0480022853.01.T01:CDS 20.0%
!! CATCTGTTATTAAGAATATA+AGG + Chr4:77558024-77558043 MsG0480022853.01.T01:intron 20.0%
!! TAAGTTAAAGAGACAATATA+AGG - Chr4:77560234-77560253 None:intergenic 20.0%
!!! AACTTAAACATATTTTTCTG+TGG - Chr4:77558754-77558773 None:intergenic 20.0%
!!! ATATTTTTATGTAAGAAGTG+GGG + Chr4:77560357-77560376 MsG0480022853.01.T01:three_prime_UTR 20.0%
!!! ATCTACAATTCAACAATTTT+AGG - Chr4:77557337-77557356 None:intergenic 20.0%
!!! GATATTTTTATGTAAGAAGT+GGG + Chr4:77560356-77560375 MsG0480022853.01.T01:three_prime_UTR 20.0%
!!! TCTACAATTCAACAATTTTA+GGG - Chr4:77557336-77557355 None:intergenic 20.0%
!!! TGATATTTTTATGTAAGAAG+TGG + Chr4:77560355-77560374 MsG0480022853.01.T01:three_prime_UTR 20.0%
! AAATCAAGAGCAAGAATATA+TGG + Chr4:77560100-77560119 MsG0480022853.01.T01:CDS 25.0%
! AAATTCTGATTACTATCATG+GGG + Chr4:77558996-77559015 MsG0480022853.01.T01:CDS 25.0%
! AACAAAAAAATCTTCATGGA+TGG - Chr4:77557363-77557382 None:intergenic 25.0%
! AATAAGCTATTTATCCAAAC+AGG + Chr4:77557753-77557772 MsG0480022853.01.T01:intron 25.0%
! AATAATGACCAACAATCATT+TGG + Chr4:77559705-77559724 MsG0480022853.01.T01:CDS 25.0%
! AATATATGGAAGATGAAGAT+GGG + Chr4:77560114-77560133 MsG0480022853.01.T01:CDS 25.0%
! ACAAAAAAATCTTCATGGAT+GGG - Chr4:77557362-77557381 None:intergenic 25.0%
! AGAAATTCTGATTACTATCA+TGG + Chr4:77558994-77559013 MsG0480022853.01.T01:CDS 25.0%
! AGTATTTGAGTCTTGATTAT+AGG + Chr4:77557812-77557831 MsG0480022853.01.T01:intron 25.0%
! ATAAGCTATTTATCCAAACA+GGG + Chr4:77557754-77557773 MsG0480022853.01.T01:intron 25.0%
! GAAATTCTGATTACTATCAT+GGG + Chr4:77558995-77559014 MsG0480022853.01.T01:CDS 25.0%
! GTCTAACAAAAAAATCTTCA+TGG - Chr4:77557367-77557386 None:intergenic 25.0%
! TTCTCTTCTTTATTGAAACA+GGG + Chr4:77558108-77558127 MsG0480022853.01.T01:intron 25.0%
!!! AAAAAGGGCTTTTTAGAAAA+AGG - Chr4:77557169-77557188 None:intergenic 25.0%
!!! GTTAGACTGTGAATTTTTTA+TGG + Chr4:77557380-77557399 MsG0480022853.01.T01:intron 25.0%
!!! TAATTTTGATTAATGGGGTT+TGG + Chr4:77557279-77557298 MsG0480022853.01.T01:intron 25.0%
!!! TGATCATCTTGTTATTTGAT+TGG + Chr4:77557430-77557449 MsG0480022853.01.T01:intron 25.0%
!!! TTTCAGATTCGAATTAGTTT+TGG + Chr4:77557215-77557234 MsG0480022853.01.T01:intron 25.0%
AAAGGAATGATCAAAAAGAG+AGG - Chr4:77557476-77557495 None:intergenic 30.0%
AATGAAGGAATTACCGAAAA+CGG + Chr4:77559876-77559895 MsG0480022853.01.T01:CDS 30.0%
AGAATAAATCTTCCACCAAA+TGG + Chr4:77559420-77559439 MsG0480022853.01.T01:CDS 30.0%
AGTCAAAAGATAGGACAAAA+TGG - Chr4:77558309-77558328 None:intergenic 30.0%
AGTTAACAAAAACAACTTCC+AGG - Chr4:77557871-77557890 None:intergenic 30.0%
ATACAGACAAGTCAAAAGAT+AGG - Chr4:77558318-77558337 None:intergenic 30.0%
ATATATGGAAGATGAAGATG+GGG + Chr4:77560115-77560134 MsG0480022853.01.T01:CDS 30.0%
ATCATATGAGTCATAACCTT+GGG - Chr4:77559148-77559167 None:intergenic 30.0%
ATGAGTCCTTCTTTCTATTT+GGG - Chr4:77559214-77559233 None:intergenic 30.0%
CAAAAAAACACAACTGCTAA+AGG - Chr4:77557842-77557861 None:intergenic 30.0%
CATGATGACAATAAGAATGA+AGG + Chr4:77559861-77559880 MsG0480022853.01.T01:CDS 30.0%
CCAAAAGGTTTCTTAAAACT+TGG - Chr4:77558640-77558659 None:intergenic 30.0%
CTTTGAATGAATACGATGTA+GGG + Chr4:77559067-77559086 MsG0480022853.01.T01:CDS 30.0%
GAATATATGGAAGATGAAGA+TGG + Chr4:77560113-77560132 MsG0480022853.01.T01:CDS 30.0%
GATGAATTTGGTAAAACAAG+AGG + Chr4:77559021-77559040 MsG0480022853.01.T01:CDS 30.0%
GCTTGTTTACTACCATTATA+AGG - Chr4:77558478-77558497 None:intergenic 30.0%
GTACATCATCTTCATATTGT+TGG - Chr4:77559755-77559774 None:intergenic 30.0%
GTTCTCTTCTTTATTGAAAC+AGG + Chr4:77558107-77558126 MsG0480022853.01.T01:intron 30.0%
TATTAACTCTCTAACGTTAC+AGG - Chr4:77560414-77560433 None:intergenic 30.0%
TCTTTGAATGAATACGATGT+AGG + Chr4:77559066-77559085 MsG0480022853.01.T01:CDS 30.0%
TGTTTACTACCATTATAAGG+CGG - Chr4:77558475-77558494 None:intergenic 30.0%
TTGAAAAACATGCACAAGAA+AGG + Chr4:77558665-77558684 MsG0480022853.01.T01:CDS 30.0%
! AGAATTTCACTAAGTGGTTT+TGG - Chr4:77559789-77559808 None:intergenic 30.0%
! CCTTGCATTTTCTTTCAAAA+GGG + Chr4:77558502-77558521 MsG0480022853.01.T01:CDS 30.0%
! CCTTTTGTATTTAACAGAGT+GGG + Chr4:77557491-77557510 MsG0480022853.01.T01:intron 30.0%
! CTTGCATTTTCTTTCAAAAG+GGG + Chr4:77558503-77558522 MsG0480022853.01.T01:CDS 30.0%
! TATGAGTATGAACAAGTTGA+GGG + Chr4:77560074-77560093 MsG0480022853.01.T01:CDS 30.0%
! TCCTTTTGTATTTAACAGAG+TGG + Chr4:77557490-77557509 MsG0480022853.01.T01:intron 30.0%
! TTAAGTTCAGCAAGACTTTT+TGG - Chr4:77559666-77559685 None:intergenic 30.0%
!! TTTTTATGGATTGCGTTTCT+TGG + Chr4:77557394-77557413 MsG0480022853.01.T01:intron 30.0%
!!! ACATGCTGCTTTTATTTTTG+TGG + Chr4:77557953-77557972 MsG0480022853.01.T01:intron 30.0%
!!! AGTTTTAAGAAACCTTTTGG+CGG + Chr4:77558640-77558659 MsG0480022853.01.T01:CDS 30.0%
!!! CCAAGTTTTAAGAAACCTTT+TGG + Chr4:77558637-77558656 MsG0480022853.01.T01:CDS 30.0%
!!! TATCTTTTGACTTGTCTGTA+TGG + Chr4:77558317-77558336 MsG0480022853.01.T01:intron 30.0%
!!! TGTGTTTTTTTGAGTAATCC+TGG + Chr4:77557850-77557869 MsG0480022853.01.T01:intron 30.0%
!!! TTTTTTCTGCTTAAGCATGT+AGG + Chr4:77560259-77560278 MsG0480022853.01.T01:three_prime_UTR 30.0%
AACCAATACCAACAATCTCT+AGG - Chr4:77558177-77558196 None:intergenic 35.0%
AAGAACAACACCAATCTTCT+TGG - Chr4:77560150-77560169 None:intergenic 35.0%
AATAATAATAGGGCCCTGTT+TGG - Chr4:77557770-77557789 None:intergenic 35.0%
ACCAACAATCATTTGGAAAG+AGG + Chr4:77559712-77559731 MsG0480022853.01.T01:CDS 35.0%
ACCACTTAGTGAAATTCTGA+AGG + Chr4:77559791-77559810 MsG0480022853.01.T01:CDS 35.0%
AGAGTAAGAGAATGTGATGA+TGG - Chr4:77556840-77556859 None:intergenic 35.0%
AGCAAGAAAGTAGACACAAT+CGG - Chr4:77557108-77557127 None:intergenic 35.0%
AGTCTTGCTGAACTTAAGTA+TGG + Chr4:77559669-77559688 MsG0480022853.01.T01:CDS 35.0%
ATAAATCTTCCACCAAATGG+TGG + Chr4:77559423-77559442 MsG0480022853.01.T01:CDS 35.0%
ATCCTAGAGATTGTTGGTAT+TGG + Chr4:77558172-77558191 MsG0480022853.01.T01:CDS 35.0%
CATGTGTATAGTGTAGTGAA+TGG + Chr4:77557663-77557682 MsG0480022853.01.T01:intron 35.0%
CCCACTCTGTTAAATACAAA+AGG - Chr4:77557494-77557513 None:intergenic 35.0%
CGTATTCATTCAAAGAGTCT+GGG - Chr4:77559062-77559081 None:intergenic 35.0%
CTATGGAAATTGTGATCATC+TGG - Chr4:77558904-77558923 None:intergenic 35.0%
GAACCCTAATTGTGATTGTT+AGG + Chr4:77557543-77557562 MsG0480022853.01.T01:intron 35.0%
GAAGATGATGTACCATTTGA+AGG + Chr4:77559762-77559781 MsG0480022853.01.T01:CDS 35.0%
GACAATACTGATGTAACTCA+CGG + Chr4:77559954-77559973 MsG0480022853.01.T01:CDS 35.0%
GAGTAAGAGAATGTGATGAT+GGG - Chr4:77556839-77556858 None:intergenic 35.0%
GATCATATGAGTCATAACCT+TGG - Chr4:77559149-77559168 None:intergenic 35.0%
GATGAGTCCTTCTTTCTATT+TGG - Chr4:77559215-77559234 None:intergenic 35.0%
GATGATCACAATTTCCATAG+TGG + Chr4:77558904-77558923 MsG0480022853.01.T01:CDS 35.0%
GGTCCTAACAATCACAATTA+GGG - Chr4:77557549-77557568 None:intergenic 35.0%
GTATGAGTATGAACAAGTTG+AGG + Chr4:77560073-77560092 MsG0480022853.01.T01:CDS 35.0%
GTCTTGCTGAACTTAAGTAT+GGG + Chr4:77559670-77559689 MsG0480022853.01.T01:CDS 35.0%
GTGAAGGAAATTAGGATGAA+CGG + Chr4:77557513-77557532 MsG0480022853.01.T01:intron 35.0%
TAAAACAAGTAAGCGTGGTT+TGG - Chr4:77556808-77556827 None:intergenic 35.0%
TAAGGTAAAACAAGTAAGCG+TGG - Chr4:77556813-77556832 None:intergenic 35.0%
TATCATGGGGAAGATGAATT+TGG + Chr4:77559009-77559028 MsG0480022853.01.T01:CDS 35.0%
TCACAATTTCCATAGTGGTA+AGG + Chr4:77558909-77558928 MsG0480022853.01.T01:CDS 35.0%
TCATATGAGTCATAACCTTG+GGG - Chr4:77559147-77559166 None:intergenic 35.0%
TCCTCTTTCCAAATGATTGT+TGG - Chr4:77559716-77559735 None:intergenic 35.0%
TCCTTCAGAATTTCACTAAG+TGG - Chr4:77559795-77559814 None:intergenic 35.0%
TCGTATTCATTCAAAGAGTC+TGG - Chr4:77559063-77559082 None:intergenic 35.0%
TGAAGGAAATTAGGATGAAC+GGG + Chr4:77557514-77557533 MsG0480022853.01.T01:intron 35.0%
TGGTCCTAACAATCACAATT+AGG - Chr4:77557550-77557569 None:intergenic 35.0%
TTGAAAGAAAATGCAAGGCA+CGG - Chr4:77558500-77558519 None:intergenic 35.0%
! AAGAACCTTTTTGCATGTCA+AGG - Chr4:77557135-77557154 None:intergenic 35.0%
! AGAACCTTTTTGCATGTCAA+GGG - Chr4:77557134-77557153 None:intergenic 35.0%
! CAAAAGGGGTTTTGCTTAAA+AGG + Chr4:77558517-77558536 MsG0480022853.01.T01:CDS 35.0%
! CTATTTTACTGCCATTGGTA+GGG - Chr4:77558573-77558592 None:intergenic 35.0%
! GAAATTCTGAAGGAGAAGAA+AGG + Chr4:77559801-77559820 MsG0480022853.01.T01:CDS 35.0%
! GCCTTGCATTTTCTTTCAAA+AGG + Chr4:77558501-77558520 MsG0480022853.01.T01:CDS 35.0%
!! CCCTTTTGAAAGAAAATGCA+AGG - Chr4:77558505-77558524 None:intergenic 35.0%
!! GATTGTTGGTATTGGTTGAA+TGG + Chr4:77558180-77558199 MsG0480022853.01.T01:CDS 35.0%
!! TGTAGCTATTTTACTGCCAT+TGG - Chr4:77558578-77558597 None:intergenic 35.0%
!!! AGCAAAGTCATCGATTTTCT+CGG + Chr4:77559340-77559359 MsG0480022853.01.T01:CDS 35.0%
AACACCTGCAACATTTGCTT+GGG - Chr4:77558698-77558717 None:intergenic 40.0%
ACAAGAGGTCAAGATGAAAG+AGG + Chr4:77559036-77559055 MsG0480022853.01.T01:CDS 40.0%
ACCTTCATACTCCTGATCTT+CGG - Chr4:77560018-77560037 None:intergenic 40.0%
ACCTTCCTCTTAATCTATCC+TGG - Chr4:77559578-77559597 None:intergenic 40.0%
AGGATCCAGGATAGATTAAG+AGG + Chr4:77559570-77559589 MsG0480022853.01.T01:CDS 40.0%
ATCCATCGATCTCTTCTTCT+GGG + Chr4:77556986-77557005 MsG0480022853.01.T01:five_prime_UTR 40.0%
ATCTCTCATTTGAAGGCAAC+TGG - Chr4:77559377-77559396 None:intergenic 40.0%
CCAAATCTCAATCTGAGAAG+AGG - Chr4:77556966-77556985 None:intergenic 40.0%
CCTCTTCTCAGATTGAGATT+TGG + Chr4:77556963-77556982 MsG0480022853.01.T01:five_prime_UTR 40.0%
CTCAAGATGAAGCCTTGAAA+AGG + Chr4:77557078-77557097 MsG0480022853.01.T01:CDS 40.0%
GAAGGAAATTAGGATGAACG+GGG + Chr4:77557515-77557534 MsG0480022853.01.T01:intron 40.0%
GAGTCAATCCTAGAGATTGT+TGG + Chr4:77558166-77558185 MsG0480022853.01.T01:CDS 40.0%
GATCAGCCCAAATAGAAAGA+AGG + Chr4:77559205-77559224 MsG0480022853.01.T01:CDS 40.0%
GATGACTTTGCCAAGAAGAT+TGG + Chr4:77560137-77560156 MsG0480022853.01.T01:CDS 40.0%
GCAGTAAAATAGCTACACAG+GGG + Chr4:77558581-77558600 MsG0480022853.01.T01:CDS 40.0%
GCTGATGTCAATTGAGCATT+TGG + Chr4:77557629-77557648 MsG0480022853.01.T01:intron 40.0%
GGAGACTATGAATATGAGCA+AGG + Chr4:77560041-77560060 MsG0480022853.01.T01:CDS 40.0%
GGCAGTAAAATAGCTACACA+GGG + Chr4:77558580-77558599 MsG0480022853.01.T01:CDS 40.0%
GTATTTAACAGAGTGGGTGA+AGG + Chr4:77557497-77557516 MsG0480022853.01.T01:intron 40.0%
GTGGAAGATTTATTCTGCCT+CGG - Chr4:77559416-77559435 None:intergenic 40.0%
TCAATGACAATGACCAACCA+AGG + Chr4:77558604-77558623 MsG0480022853.01.T01:CDS 40.0%
TCCAGGATAGATTAAGAGGA+AGG + Chr4:77559574-77559593 MsG0480022853.01.T01:CDS 40.0%
TGAATATGAGCAAGGTGATG+AGG + Chr4:77560049-77560068 MsG0480022853.01.T01:CDS 40.0%
TGACTCTAGCATACTCACTA+TGG - Chr4:77558152-77558171 None:intergenic 40.0%
TGGAAAGAGGAAAAGCTTCA+GGG + Chr4:77559725-77559744 MsG0480022853.01.T01:CDS 40.0%
TGGCAGTAAAATAGCTACAC+AGG + Chr4:77558579-77558598 MsG0480022853.01.T01:CDS 40.0%
TTCTCCCTTGACATGCAAAA+AGG + Chr4:77557127-77557146 MsG0480022853.01.T01:CDS 40.0%
TTGCTGAACTTAAGTATGGG+AGG + Chr4:77559673-77559692 MsG0480022853.01.T01:CDS 40.0%
TTGGAAAGAGGAAAAGCTTC+AGG + Chr4:77559724-77559743 MsG0480022853.01.T01:CDS 40.0%
! AATCTGAAGTTGTGGCTGTT+GGG - Chr4:77557033-77557052 None:intergenic 40.0%
! CTCTGACAATGTTCCGTTTT+CGG - Chr4:77559892-77559911 None:intergenic 40.0%
! GACATCAGCTTACACTTTTG+TGG - Chr4:77557618-77557637 None:intergenic 40.0%
! GTCATCATGTTTGCTACTGT+GGG - Chr4:77559850-77559869 None:intergenic 40.0%
! GTGGAGCAGTCTCAAATTTT+TGG - Chr4:77558735-77558754 None:intergenic 40.0%
! TGAGTCTGAATCTGAAGTTG+TGG - Chr4:77557041-77557060 None:intergenic 40.0%
! TGTCATCATGTTTGCTACTG+TGG - Chr4:77559851-77559870 None:intergenic 40.0%
! TTGACGGATCTCTCATTTGA+AGG - Chr4:77559384-77559403 None:intergenic 40.0%
! TTTTACATGCAGCCTCTTGA+CGG + Chr4:77558361-77558380 MsG0480022853.01.T01:intron 40.0%
!! ACAATCGGTGTTCCTTTTCA+AGG - Chr4:77557093-77557112 None:intergenic 40.0%
!! CTTTTCAAGGCTTCATCTTG+AGG - Chr4:77557080-77557099 None:intergenic 40.0%
!! GAATGTGATGATGGGCTTTA+AGG - Chr4:77556831-77556850 None:intergenic 40.0%
!! GCAGTCTCAAATTTTTGGAC+AGG - Chr4:77558730-77558749 None:intergenic 40.0%
!! GCTATTTTACTGCCATTGGT+AGG - Chr4:77558574-77558593 None:intergenic 40.0%
!! TGTTTTTCAATGCCGCCAAA+AGG - Chr4:77558655-77558674 None:intergenic 40.0%
!!! AAGTCATCGATTTTCTCGGA+AGG + Chr4:77559344-77559363 MsG0480022853.01.T01:CDS 40.0%
!!! AGTGGTTTTGGACCTTCAAA+TGG - Chr4:77559777-77559796 None:intergenic 40.0%
AAAGGACAGAAAACTCGTGC+TGG - Chr4:77558256-77558275 None:intergenic 45.0%
AACCCAGAAGAAGAGATCGA+TGG - Chr4:77556991-77557010 None:intergenic 45.0%
AACTCACGGTCAATCATCTG+AGG + Chr4:77559968-77559987 MsG0480022853.01.T01:CDS 45.0%
AACTTGGATTCTCAGCTCCT+TGG - Chr4:77558624-77558643 None:intergenic 45.0%
AAGGCTTCATCTTGAGGAGA+AGG - Chr4:77557074-77557093 None:intergenic 45.0%
AAGTTTCTCCTCTCGTCATC+TGG - Chr4:77559603-77559622 None:intergenic 45.0%
ACCATTATAAGGCGGTGCAT+GGG - Chr4:77558467-77558486 None:intergenic 45.0%
ACCTGCAGGGTTAGATAATG+AGG + Chr4:77558795-77558814 MsG0480022853.01.T01:CDS 45.0%
ACTTCCCAAGCAAATGTTGC+AGG + Chr4:77558691-77558710 MsG0480022853.01.T01:CDS 45.0%
ATATGGCTGGGAACCTAGAA+AGG + Chr4:77559182-77559201 MsG0480022853.01.T01:CDS 45.0%
ATCGATCTCTTCTTCTGGGT+TGG + Chr4:77556990-77557009 MsG0480022853.01.T01:five_prime_UTR 45.0%
ATTTGGGCTGATCCCTTTCT+AGG - Chr4:77559198-77559217 None:intergenic 45.0%
CAAAGAAACTCACCGGATGA+CGG - Chr4:77558233-77558252 None:intergenic 45.0%
CAACACCTGCAACATTTGCT+TGG - Chr4:77558699-77558718 None:intergenic 45.0%
CAAGTGTTCATTCCGTCATC+CGG + Chr4:77558218-77558237 MsG0480022853.01.T01:CDS 45.0%
CAGAGTGGGTGAAGGAAATT+AGG + Chr4:77557505-77557524 MsG0480022853.01.T01:intron 45.0%
CGTCATTGTCCTTACCACTA+TGG - Chr4:77558921-77558940 None:intergenic 45.0%
CTCTAGCATACTCACTATGG+CGG - Chr4:77558149-77558168 None:intergenic 45.0%
CTCTCTCTACCCAATTTCTG+TGG + Chr4:77556912-77556931 MsG0480022853.01.T01:five_prime_UTR 45.0%
CTGAAGGAGAAGAAAGGAGT+TGG + Chr4:77559807-77559826 MsG0480022853.01.T01:CDS 45.0%
GACAGATATTACCCCAGTTG+AGG - Chr4:77560285-77560304 None:intergenic 45.0%
GAGAAGAGGAGAAGAAGTAG+AGG - Chr4:77556952-77556971 None:intergenic 45.0%
GATCACATGCAAGAGCCATA+TGG + Chr4:77559165-77559184 MsG0480022853.01.T01:CDS 45.0%
GATCCATCGATCTCTTCTTC+TGG + Chr4:77556985-77557004 MsG0480022853.01.T01:five_prime_UTR 45.0%
GCCTCGGAAACGATTATTGA+CGG - Chr4:77559400-77559419 None:intergenic 45.0%
GCTACAAGAACATCAAACCC+AGG - Chr4:77558964-77558983 None:intergenic 45.0%
GGAAGAAGAGTCCAAGATTC+AGG + Chr4:77559917-77559936 MsG0480022853.01.T01:CDS 45.0%
GTTGATGCACACGATTAGAC+CGG - Chr4:77558873-77558892 None:intergenic 45.0%
TAAGCATGTAGGCCTCAACT+GGG + Chr4:77560270-77560289 MsG0480022853.01.T01:three_prime_UTR 45.0%
TACCATTATAAGGCGGTGCA+TGG - Chr4:77558468-77558487 None:intergenic 45.0%
TATGGCTGGGAACCTAGAAA+GGG + Chr4:77559183-77559202 MsG0480022853.01.T01:CDS 45.0%
TCATTATCTAACCCTGCAGG+TGG - Chr4:77558796-77558815 None:intergenic 45.0%
TCCGTCAATAATCGTTTCCG+AGG + Chr4:77559396-77559415 MsG0480022853.01.T01:CDS 45.0%
TCGATCTCTTCTTCTGGGTT+GGG + Chr4:77556991-77557010 MsG0480022853.01.T01:five_prime_UTR 45.0%
TCTCTACCCAATTTCTGTGG+CGG + Chr4:77556915-77556934 MsG0480022853.01.T01:five_prime_UTR 45.0%
TGCGCTTGGATAAACGATGT+CGG - Chr4:77559278-77559297 None:intergenic 45.0%
TTAAGCATGTAGGCCTCAAC+TGG + Chr4:77560269-77560288 MsG0480022853.01.T01:three_prime_UTR 45.0%
TTACTGCCATTGGTAGGGTT+TGG - Chr4:77558568-77558587 None:intergenic 45.0%
TTGATGCACACGATTAGACC+GGG - Chr4:77558872-77558891 None:intergenic 45.0%
TTGGACAGAGGAAGAATCAG+TGG + Chr4:77559507-77559526 MsG0480022853.01.T01:CDS 45.0%
TTGTGATCATCTGGCAAACG+AGG - Chr4:77558895-77558914 None:intergenic 45.0%
TTTACATGCAGCCTCTTGAC+GGG + Chr4:77558362-77558381 MsG0480022853.01.T01:intron 45.0%
TTTCTAGGTTCCCAGCCATA+TGG - Chr4:77559183-77559202 None:intergenic 45.0%
! ATCATGTTTGCTACTGTGGG+AGG - Chr4:77559847-77559866 None:intergenic 45.0%
! GAATCTGAAGTTGTGGCTGT+TGG - Chr4:77557034-77557053 None:intergenic 45.0%
! GATCAGGAGTATGAAGGTGA+AGG + Chr4:77560020-77560039 MsG0480022853.01.T01:CDS 45.0%
! TCATCTTGAGGAGAAGGTGT+TGG - Chr4:77557068-77557087 None:intergenic 45.0%
!! GGATGACGGAATGAACACTT+GGG - Chr4:77558219-77558238 None:intergenic 45.0%
!! TAATAAAATAACAAAAATTA+TGG - Chr4:77557570-77557589 None:intergenic 5.0%
!!! AAAAATTTAATTTTGATTAA+TGG + Chr4:77557272-77557291 MsG0480022853.01.T01:intron 5.0%
!!! AAAATTTAATTTTGATTAAT+GGG + Chr4:77557273-77557292 MsG0480022853.01.T01:intron 5.0%
!!! CTTTTTATTTTAATAATAAT+AGG - Chr4:77557781-77557800 None:intergenic 5.0%
AACCAGCAGTCACCTAGAGA+GGG + Chr4:77559482-77559501 MsG0480022853.01.T01:CDS 50.0%
AAGCATGTAGGCCTCAACTG+GGG + Chr4:77560271-77560290 MsG0480022853.01.T01:three_prime_UTR 50.0%
AAGGCTTCAATCGCCTCATG+AGG + Chr4:77559545-77559564 MsG0480022853.01.T01:CDS 50.0%
ACACGATTAGACCGGGCATT+AGG - Chr4:77558865-77558884 None:intergenic 50.0%
ACAGAGGAAGAATCAGTGGC+CGG + Chr4:77559511-77559530 MsG0480022853.01.T01:CDS 50.0%
ACATGCAAGAGCCATATGGC+TGG + Chr4:77559169-77559188 MsG0480022853.01.T01:CDS 50.0%
ACCCATGCACCGCCTTATAA+TGG + Chr4:77558463-77558482 MsG0480022853.01.T01:CDS 50.0%
AGAGAGCCGCCACAGAAATT+GGG - Chr4:77556924-77556943 None:intergenic 50.0%
AGGCTTCAATCGCCTCATGA+GGG + Chr4:77559546-77559565 MsG0480022853.01.T01:CDS 50.0%
AGGTGACTGTCACCACCATT+TGG - Chr4:77559438-77559457 None:intergenic 50.0%
ATCTGTCGTCGCTCATGATG+AGG + Chr4:77559317-77559336 MsG0480022853.01.T01:CDS 50.0%
CACGGTCAATCATCTGAGGA+AGG + Chr4:77559972-77559991 MsG0480022853.01.T01:CDS 50.0%
CATGCAAGAGCCATATGGCT+GGG + Chr4:77559170-77559189 MsG0480022853.01.T01:CDS 50.0%
CATGGACCAAACCCTACCAA+TGG + Chr4:77558559-77558578 MsG0480022853.01.T01:CDS 50.0%
CGGAACATTGTCAGAGAGCA+AGG + Chr4:77559896-77559915 MsG0480022853.01.T01:CDS 50.0%
CGTTTATCCAAGCGCAGGAA+GGG + Chr4:77559282-77559301 MsG0480022853.01.T01:CDS 50.0%
CTAGAGAGGGACTTAGACAG+AGG + Chr4:77559456-77559475 MsG0480022853.01.T01:CDS 50.0%
CTCTGTCTAAGTCCCTCTCT+AGG - Chr4:77559458-77559477 None:intergenic 50.0%
CTTCAGCAGTCGATCGAATG+AGG + Chr4:77559620-77559639 MsG0480022853.01.T01:CDS 50.0%
GAAGCCTTCCAGATGACAAC+CGG - Chr4:77559533-77559552 None:intergenic 50.0%
GACATCGTTTATCCAAGCGC+AGG + Chr4:77559277-77559296 MsG0480022853.01.T01:CDS 50.0%
GAGAAGAAAGGAGTTGGAGC+TGG + Chr4:77559813-77559832 MsG0480022853.01.T01:CDS 50.0%
GAGAGAGAGAGAGAGAGTAG+AGG - Chr4:77556899-77556918 None:intergenic 50.0%
GATAGATTTCGTGTGCCCCA+AGG + Chr4:77559129-77559148 MsG0480022853.01.T01:CDS 50.0%
GATCGAATGAGGACCGAAGT+GGG + Chr4:77559631-77559650 MsG0480022853.01.T01:CDS 50.0%
GCCTCATTATCTAACCCTGC+AGG - Chr4:77558799-77558818 None:intergenic 50.0%
GTTCCTAACAACCCGTCAAG+AGG - Chr4:77558376-77558395 None:intergenic 50.0%
TCCAAGATTCAGGCTGCTGA+TGG + Chr4:77559927-77559946 MsG0480022853.01.T01:CDS 50.0%
TCCATCAGCAGCCTGAATCT+TGG - Chr4:77559931-77559950 None:intergenic 50.0%
TCGTAGTCCTGACAGTGTTG+AGG + Chr4:77559242-77559261 MsG0480022853.01.T01:CDS 50.0%
TCGTTTATCCAAGCGCAGGA+AGG + Chr4:77559281-77559300 MsG0480022853.01.T01:CDS 50.0%
TGACTGTCACCACCATTTGG+TGG - Chr4:77559435-77559454 None:intergenic 50.0%
TGGATTCTCAGCTCCTTGGT+TGG - Chr4:77558620-77558639 None:intergenic 50.0%
TGGTGACAGTCACCTAGAGA+GGG + Chr4:77559443-77559462 MsG0480022853.01.T01:CDS 50.0%
TTATCTAACCCTGCAGGTGG+TGG - Chr4:77558793-77558812 None:intergenic 50.0%
TTCAATCGCCTCATGAGGGA+AGG + Chr4:77559550-77559569 MsG0480022853.01.T01:CDS 50.0%
TTCTCAGAGAGTCGTCTCCT+GGG + Chr4:77558944-77558963 MsG0480022853.01.T01:CDS 50.0%
TTGTGGCTGTGCGAATCATG+TGG + Chr4:77557970-77557989 MsG0480022853.01.T01:intron 50.0%
TTTCTCAGAGAGTCGTCTCC+TGG + Chr4:77558943-77558962 MsG0480022853.01.T01:CDS 50.0%
! GCCGAAGATCAGGAGTATGA+AGG + Chr4:77560014-77560033 MsG0480022853.01.T01:CDS 50.0%
! GTGCTGGCAAAGAAACTCAC+CGG - Chr4:77558240-77558259 None:intergenic 50.0%
! TCTGAGACCTCAACACTGTC+AGG - Chr4:77559252-77559271 None:intergenic 50.0%
!! CGGATGACGGAATGAACACT+TGG - Chr4:77558220-77558239 None:intergenic 50.0%
AAAGGAGTTGGAGCTGGTGC+AGG + Chr4:77559819-77559838 MsG0480022853.01.T01:CDS 55.0%
AGTTCTCCACCGCCAACCAA+TGG + Chr4:77558838-77558857 MsG0480022853.01.T01:CDS 55.0%
ATCAGTGGCCGGTTGTCATC+TGG + Chr4:77559522-77559541 MsG0480022853.01.T01:CDS 55.0%
ATTGGTTGGCGGTGGAGAAC+TGG - Chr4:77558839-77558858 None:intergenic 55.0%
CAACCAATGGGCCTAATGCC+CGG + Chr4:77558851-77558870 MsG0480022853.01.T01:CDS 55.0%
CAGTCACCTAGAGAGGGACT+TGG + Chr4:77559449-77559468 MsG0480022853.01.T01:CDS 55.0%
CGATCGAATGAGGACCGAAG+TGG + Chr4:77559630-77559649 MsG0480022853.01.T01:CDS 55.0%
CGATGAAGCTGCCGAAGATC+AGG + Chr4:77560004-77560023 MsG0480022853.01.T01:CDS 55.0%
CGGGTTGTTAGGAACACCAC+CGG + Chr4:77558381-77558400 MsG0480022853.01.T01:CDS 55.0%
CTAGAGAGGGACTTGGACAG+AGG + Chr4:77559495-77559514 MsG0480022853.01.T01:CDS 55.0%
CTCTGTCCAAGTCCCTCTCT+AGG - Chr4:77559497-77559516 None:intergenic 55.0%
GAACCAGCAGTCACCTAGAG+AGG + Chr4:77559481-77559500 MsG0480022853.01.T01:CDS 55.0%
GAAGGTTGCCAGATGACGAG+AGG + Chr4:77559592-77559611 MsG0480022853.01.T01:CDS 55.0%
GACAGATGTGCCTTCCTGCA+TGG + Chr4:77558541-77558560 MsG0480022853.01.T01:CDS 55.0%
GAGAGAGCCGCCACAGAAAT+TGG - Chr4:77556925-77556944 None:intergenic 55.0%
GCAGATGTTGCCGCAATCTG+TGG - Chr4:77558442-77558461 None:intergenic 55.0%
GTGGTGACAGTCACCTAGAG+AGG + Chr4:77559442-77559461 MsG0480022853.01.T01:CDS 55.0%
GTTCTCCACCGCCAACCAAT+GGG + Chr4:77558839-77558858 MsG0480022853.01.T01:CDS 55.0%
TCCAAGCGCAGGAAGGGAAA+CGG + Chr4:77559288-77559307 MsG0480022853.01.T01:CDS 55.0%
TCCTGGATCCTTCCCTCATG+AGG - Chr4:77559561-77559580 None:intergenic 55.0%
TTGGCGCAGAGAACCCACTT+CGG - Chr4:77559647-77559666 None:intergenic 55.0%
TTGTGGCTGTTGGGCAACCA+TGG - Chr4:77557024-77557043 None:intergenic 55.0%
! AGGGTTTGGTCCATGCAGGA+AGG - Chr4:77558554-77558573 None:intergenic 55.0%
! GCATTAGGCCCATTGGTTGG+CGG - Chr4:77558850-77558869 None:intergenic 55.0%
! TGGTAGGGTTTGGTCCATGC+AGG - Chr4:77558558-77558577 None:intergenic 55.0%
!! CAGCCTCTTGACGGGTTGTT+AGG + Chr4:77558370-77558389 MsG0480022853.01.T01:intron 55.0%
AGACCGGGCATTAGGCCCAT+TGG - Chr4:77558857-77558876 None:intergenic 60.0%
ATCTGTGGCGTGGGGACAGA+TGG - Chr4:77558427-77558446 None:intergenic 60.0%
ATGTACCGCCACCACCTGCA+GGG + Chr4:77558782-77558801 MsG0480022853.01.T01:CDS 60.0%
CGGGCATTAGGCCCATTGGT+TGG - Chr4:77558853-77558872 None:intergenic 60.0%
GCCTCATGAGGGAAGGATCC+AGG + Chr4:77559557-77559576 MsG0480022853.01.T01:CDS 60.0%
GTCCCTCTCTAGGTGACTGC+TGG - Chr4:77559487-77559506 None:intergenic 60.0%
GTGGCCGGTTGTCATCTGGA+AGG + Chr4:77559526-77559545 MsG0480022853.01.T01:CDS 60.0%
GTTGCCGCAATCTGTGGCGT+GGG - Chr4:77558436-77558455 None:intergenic 60.0%
TGTCCCCACGCCACAGATTG+CGG + Chr4:77558429-77558448 MsG0480022853.01.T01:CDS 60.0%
TGTTGCCGCAATCTGTGGCG+TGG - Chr4:77558437-77558456 None:intergenic 60.0%
TTGCCGCAATCTGTGGCGTG+GGG - Chr4:77558435-77558454 None:intergenic 60.0%
! CTGGGTTGGGTTGTTCGCCA+TGG + Chr4:77557004-77557023 MsG0480022853.01.T01:exon 60.0%
! TCTAACCCTGCAGGTGGTGG+CGG - Chr4:77558790-77558809 None:intergenic 60.0%
! TTAGGCCCATTGGTTGGCGG+TGG - Chr4:77558847-77558866 None:intergenic 60.0%
CATGTACCGCCACCACCTGC+AGG + Chr4:77558781-77558800 MsG0480022853.01.T01:CDS 65.0%
CCAGCAGCAGCAGCAGTTGC+CGG - Chr4:77558403-77558422 None:intergenic 65.0%
GCCGTTTCCCTTCCTGCGCT+TGG - Chr4:77559292-77559311 None:intergenic 65.0%
CCGGCAACTGCTGCTGCTGC+TGG + Chr4:77558400-77558419 MsG0480022853.01.T01:CDS 70.0%
GCAGCAGCAGCAGTTGCCGG+TGG - Chr4:77558400-77558419 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 77556754 77560468 77556754 ID=MsG0480022853.01;Name=MsG0480022853.01
Chr4 mRNA 77556754 77560468 77556754 ID=MsG0480022853.01.T01;Parent=MsG0480022853.01;Name=MsG0480022853.01.T01;_AED=0.18;_eAED=0.18;_QI=269|1|1|1|1|1|3|293|679
Chr4 exon 77556754 77557148 77556754 ID=MsG0480022853.01.T01:exon:11070;Parent=MsG0480022853.01.T01
Chr4 exon 77558129 77558239 77558129 ID=MsG0480022853.01.T01:exon:11071;Parent=MsG0480022853.01.T01
Chr4 exon 77558373 77560468 77558373 ID=MsG0480022853.01.T01:exon:11072;Parent=MsG0480022853.01.T01
Chr4 five_prime_UTR 77556754 77557022 77556754 ID=MsG0480022853.01.T01:five_prime_utr;Parent=MsG0480022853.01.T01
Chr4 CDS 77557023 77557148 77557023 ID=MsG0480022853.01.T01:cds;Parent=MsG0480022853.01.T01
Chr4 CDS 77558129 77558239 77558129 ID=MsG0480022853.01.T01:cds;Parent=MsG0480022853.01.T01
Chr4 CDS 77558373 77560175 77558373 ID=MsG0480022853.01.T01:cds;Parent=MsG0480022853.01.T01
Chr4 three_prime_UTR 77560176 77560468 77560176 ID=MsG0480022853.01.T01:three_prime_utr;Parent=MsG0480022853.01.T01
Gene Sequence

>MsG0480022853.01.T01

ATGGTTGCCCAACAGCCACAACTTCAGATTCAGACTCAGCAACCAACACCTTCTCCTCAAGATGAAGCCTTGAAAAGGAACACCGATTGTGTCTACTTTCTTGCTTCTCCCTTGACATGCAAAAAGGGAAACGAATGTGAGTACCGCCATAGTGAGTATGCTAGAGTCAATCCTAGAGATTGTTGGTATTGGTTGAATGGTAACTGCTTGAATCCCAAGTGTTCATTCCGTCATCCGCCTCTTGACGGGTTGTTAGGAACACCACCGGCAACTGCTGCTGCTGCTGGACCATCTGTCCCCACGCCACAGATTGCGGCAACATCTGCAACCCATGCACCGCCTTATAATGGTAGTAAACAAGCCGTGCCTTGCATTTTCTTTCAAAAGGGGTTTTGCTTAAAAGGTGACAGATGTGCCTTCCTGCATGGACCAAACCCTACCAATGGCAGTAAAATAGCTACACAGGGGTCAATGACAATGACCAACCAAGGAGCTGAGAATCCAAGTTTTAAGAAACCTTTTGGCGGCATTGAAAAACATGCACAAGAAAGGAAAACTTCCCAAGCAAATGTTGCAGGTGTTGAAGCTAAACCTGTCCAAAAATTTGAGACTGCTCCACAGAAAAATATGTTTAAGTTGGTGAAGCATGTACCGCCACCACCTGCAGGGTTAGATAATGAGGCTTCGCGATTTAAGACAACCAGTTCTCCACCGCCAACCAATGGGCCTAATGCCCGGTCTAATCGTGTGCATCAACCTCGTTTGCCAGATGATCACAATTTCCATAGTGGTAAGGACAATGACGAGTTTCTCAGAGAGTCGTCTCCTGGGTTTGATGTTCTTGTAGCTGACGAACTTAGAAATTCTGATTACTATCATGGGGAAGATGAATTTGGTAAAACAAGAGGTCAAGATGAAAGAGGCCCAGACTCTTTGAATGAATACGATGTAGGGCATTCTGCTGATTATAGTTTAGCTGCTGATATTGATCGAGATAGATTTCGTGTGCCCCAAGGTTATGACTCATATGATCACATGCAAGAGCCATATGGCTGGGAACCTAGAAAGGGATCAGCCCAAATAGAAAGAAGGACTCATCACAGATCTCGTAGTCCTGACAGTGTTGAGGTCTCAGATCTCCGACATCGTTTATCCAAGCGCAGGAAGGGAAACGGCTTAAAATCTGTCGTCGCTCATGATGAGGAGCAAAGTCATCGATTTTCTCGGAAGGATTCACACCAGTTGCCTTCAAATGAGAGATCCGTCAATAATCGTTTCCGAGGCAGAATAAATCTTCCACCAAATGGTGGTGACAGTCACCTAGAGAGGGACTTAGACAGAGGAAGAACCAGCAGTCACCTAGAGAGGGACTTGGACAGAGGAAGAATCAGTGGCCGGTTGTCATCTGGAAGGCTTCAATCGCCTCATGAGGGAAGGATCCAGGATAGATTAAGAGGAAGGTTGCCAGATGACGAGAGGAGAAACTTCAGCAGTCGATCGAATGAGGACCGAAGTGGGTTCTCTGCGCCAAAAAGTCTTGCTGAACTTAAGTATGGGAGGAACACTGAGAATAATGACCAACAATCATTTGGAAAGAGGAAAAGCTTCAGGGATCACCAACAATATGAAGATGATGTACCATTTGAAGGTCCAAAACCACTTAGTGAAATTCTGAAGGAGAAGAAAGGAGTTGGAGCTGGTGCAGGCTCCTCCCACAGTAGCAAACATGATGACAATAAGAATGAAGGAATTACCGAAAACGGAACATTGTCAGAGAGCAAGGAAGAAGAGTCCAAGATTCAGGCTGCTGATGGAGTTGACAATACTGATGTAACTCACGGTCAATCATCTGAGGAAGGAATGATATACGATGAAGCTGCCGAAGATCAGGAGTATGAAGGTGAAGGAGACTATGAATATGAGCAAGGTGATGAGGAGTATGAGTATGAACAAGTTGAGGGTGAAAATCAAGAGCAAGAATATATGGAAGATGAAGATGGGGATGACTTTGCCAAGAAGATTGGTGTTGTTCTTTCATAA
Protein sequence

>MsG0480022853.01.T01

MVAQQPQLQIQTQQPTPSPQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCWYWLNGNCLNPKCSFRHPPLDGLLGTPPATAAAAGPSVPTPQIAATSATHAPPYNGSKQAVPCIFFQKGFCLKGDRCAFLHGPNPTNGSKIATQGSMTMTNQGAENPSFKKPFGGIEKHAQERKTSQANVAGVEAKPVQKFETAPQKNMFKLVKHVPPPPAGLDNEASRFKTTSSPPPTNGPNARSNRVHQPRLPDDHNFHSGKDNDEFLRESSPGFDVLVADELRNSDYYHGEDEFGKTRGQDERGPDSLNEYDVGHSADYSLAADIDRDRFRVPQGYDSYDHMQEPYGWEPRKGSAQIERRTHHRSRSPDSVEVSDLRHRLSKRRKGNGLKSVVAHDEEQSHRFSRKDSHQLPSNERSVNNRFRGRINLPPNGGDSHLERDLDRGRTSSHLERDLDRGRISGRLSSGRLQSPHEGRIQDRLRGRLPDDERRNFSSRSNEDRSGFSAPKSLAELKYGRNTENNDQQSFGKRKSFRDHQQYEDDVPFEGPKPLSEILKEKKGVGAGAGSSHSSKHDDNKNEGITENGTLSESKEEESKIQAADGVDNTDVTHGQSSEEGMIYDEAAEDQEYEGEGDYEYEQGDEEYEYEQVEGENQEQEYMEDEDGDDFAKKIGVVLS*