AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022957.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022957.01.T01 MTR_8g080490 99.213 254 2 0 39 292 154 407 0.0 528
MsG0480022957.01.T01 MTR_3g085480 79.044 272 46 1 19 290 147 407 3.11e-162 458
MsG0480022957.01.T01 MTR_8g080490 98.496 133 2 0 39 171 154 286 1.45e-91 274
MsG0480022957.01.T01 MTR_3g037720 45.669 254 137 1 41 294 229 481 5.23e-81 253
MsG0480022957.01.T01 MTR_6g027310 45.059 253 137 1 40 292 224 474 1.51e-80 252
MsG0480022957.01.T01 MTR_7g087100 45.238 252 136 1 41 292 230 479 2.03e-79 249
MsG0480022957.01.T01 MTR_4g084200 44.048 252 135 2 41 292 208 453 1.58e-68 221
MsG0480022957.01.T01 MTR_4g084200 45.175 228 122 1 41 268 208 432 2.61e-62 203
MsG0480022957.01.T01 MTR_4g084200 45.946 222 117 1 41 262 208 426 2.09e-61 201
MsG0480022957.01.T01 MTR_1g097090 37.226 274 145 4 40 290 184 453 4.29e-55 185
MsG0480022957.01.T01 MTR_1g097090 37.226 274 145 4 40 290 184 453 4.61e-55 185
MsG0480022957.01.T01 MTR_4g077920 37.066 259 159 1 40 294 155 413 4.21e-54 182
MsG0480022957.01.T01 MTR_4g077920 37.066 259 159 1 40 294 213 471 1.60e-53 182
MsG0480022957.01.T01 MTR_4g077920 37.903 248 150 1 40 283 213 460 2.58e-52 178
MsG0480022957.01.T01 MTR_4g115460 29.344 259 149 9 47 288 222 463 1.07e-18 86.3
MsG0480022957.01.T01 MTR_7g103270 28.516 256 165 9 34 283 146 389 1.48e-18 85.5
MsG0480022957.01.T01 MTR_3g110200 25.882 255 169 7 40 283 337 582 6.84e-18 84.0
MsG0480022957.01.T01 MTR_4g115530 27.612 268 152 11 34 283 84 327 6.96e-17 80.1
MsG0480022957.01.T01 MTR_4g115530 27.612 268 152 11 34 283 138 381 1.07e-16 80.1
MsG0480022957.01.T01 MTR_3g081240 28.151 238 154 7 47 279 208 433 2.47e-16 79.3
MsG0480022957.01.T01 MTR_3g110198 26.616 263 157 9 40 283 340 585 2.51e-16 79.3
MsG0480022957.01.T01 MTR_5g031480 26.423 246 154 8 44 279 174 402 3.11e-16 78.6
MsG0480022957.01.T01 MTR_1g061760 28.244 262 132 10 47 283 245 475 1.27e-15 77.0
MsG0480022957.01.T01 MTR_3g097310 27.200 250 139 9 47 278 253 477 2.20e-15 76.6
MsG0480022957.01.T01 MTR_4g100730 26.667 255 151 8 47 283 291 527 4.61e-15 75.5
MsG0480022957.01.T01 MTR_4g115540 28.287 251 145 10 47 283 386 615 1.72e-14 73.9
MsG0480022957.01.T01 MTR_5g049790 25.714 245 141 7 44 279 210 422 2.50e-14 73.2
MsG0480022957.01.T01 MTR_7g103260 27.016 248 154 8 46 283 158 388 3.38e-14 72.8
MsG0480022957.01.T01 MTR_3g080690 26.471 238 158 7 47 279 206 431 3.67e-14 72.8
MsG0480022957.01.T01 MTR_3g106690 25.926 243 157 9 50 283 154 382 7.13e-14 71.6
MsG0480022957.01.T01 MTR_7g103150 24.706 255 172 6 40 283 231 476 3.55e-13 69.7
MsG0480022957.01.T01 MTR_1g090733 27.273 242 161 10 47 283 308 539 4.19e-13 69.7
MsG0480022957.01.T01 MTR_1g006600 25.000 248 158 8 47 283 348 578 1.24e-12 68.6
MsG0480022957.01.T01 MTR_1g029350 53.846 52 24 0 174 225 301 352 2.53e-12 67.4
MsG0480022957.01.T01 MTR_8g102840 26.271 236 161 7 47 278 370 596 1.09e-11 65.5
MsG0480022957.01.T01 MTR_2g084245 28.426 197 113 8 50 225 180 369 7.00e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022957.01.T01 AT1G67410 71.984 257 69 1 39 292 159 415 1.35e-140 403
MsG0480022957.01.T01 AT3G45400 46.825 252 132 1 41 292 196 445 2.86e-82 256
MsG0480022957.01.T01 AT1G74680 46.000 250 134 1 41 290 191 439 2.19e-80 251
MsG0480022957.01.T01 AT2G35100 45.669 254 132 2 41 294 170 417 2.09e-72 229
MsG0480022957.01.T01 AT3G03650 40.234 256 148 2 40 292 234 487 7.48e-68 219
MsG0480022957.01.T01 AT5G44930 42.460 252 139 2 41 292 166 411 2.54e-64 209
MsG0480022957.01.T01 AT5G44930 42.460 252 139 2 41 292 166 411 2.54e-64 209
MsG0480022957.01.T01 AT5G44930 46.411 209 109 1 41 249 166 371 3.95e-58 191
MsG0480022957.01.T01 AT5G16890 37.838 259 157 1 40 294 219 477 1.62e-56 190
MsG0480022957.01.T01 AT1G67410 64.706 136 45 1 39 171 159 294 4.85e-55 181
MsG0480022957.01.T01 AT1G34270 37.591 274 143 4 41 290 185 454 5.41e-54 182
MsG0480022957.01.T01 AT3G07620 27.132 258 168 9 33 283 205 449 3.30e-19 87.8
MsG0480022957.01.T01 AT4G38040 25.000 268 166 9 25 279 167 412 1.45e-16 79.7
MsG0480022957.01.T01 AT3G42180 27.668 253 144 11 47 283 101 330 6.74e-16 77.4
MsG0480022957.01.T01 AT3G42180 27.668 253 144 11 47 283 230 459 1.41e-15 77.0
MsG0480022957.01.T01 AT5G33290 26.953 256 142 9 47 283 260 489 4.25e-15 75.9
MsG0480022957.01.T01 AT4G16745 32.727 110 71 1 174 283 417 523 6.16e-14 72.4
MsG0480022957.01.T01 AT5G19670 26.154 260 165 9 39 283 352 599 1.04e-13 71.6
MsG0480022957.01.T01 AT5G19670 26.154 260 165 9 39 283 352 599 1.04e-13 71.6
MsG0480022957.01.T01 AT5G11130 25.275 273 152 12 34 283 80 323 1.34e-13 70.5
MsG0480022957.01.T01 AT5G03795 26.033 242 162 7 47 283 277 506 2.31e-13 70.5
MsG0480022957.01.T01 AT5G25310 25.869 259 161 9 34 278 224 465 2.62e-13 70.5
MsG0480022957.01.T01 AT5G11130 25.275 273 152 12 34 283 224 467 2.79e-13 70.1
MsG0480022957.01.T01 AT5G25820 23.047 256 170 7 40 283 404 644 4.60e-13 69.7
MsG0480022957.01.T01 AT4G32790 24.324 259 169 8 40 283 339 585 5.54e-13 69.3
MsG0480022957.01.T01 AT4G32790 24.324 259 169 8 40 283 339 585 5.54e-13 69.3
MsG0480022957.01.T01 AT4G32790 24.324 259 169 8 40 283 339 585 5.54e-13 69.3
MsG0480022957.01.T01 AT1G21480 28.788 198 123 6 42 225 174 367 8.52e-13 68.6
MsG0480022957.01.T01 AT1G21480 28.788 198 123 6 42 225 174 367 1.09e-12 68.2
MsG0480022957.01.T01 AT4G38040 25.769 260 155 10 25 268 167 404 1.46e-12 67.8
MsG0480022957.01.T01 AT5G20260 26.337 243 161 7 47 283 94 324 1.94e-12 67.0
MsG0480022957.01.T01 AT4G16745 34.343 99 62 1 174 272 417 512 2.08e-12 67.8
MsG0480022957.01.T01 AT5G20260 26.337 243 161 7 47 283 121 351 2.67e-12 67.0
MsG0480022957.01.T01 AT5G20260 26.337 243 161 7 47 283 226 456 5.61e-12 66.2

Find 74 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCAAGTTGTTGTGGATTT+TGG 0.180394 4:+79085846 MsG0480022957.01.T01:CDS
TTTAGACCTCTGCCAATATT+TGG 0.188935 4:-79085751 None:intergenic
TCTTTCGAGGGAGGACTTTC+AGG 0.233960 4:+79085991 MsG0480022957.01.T01:CDS
ATTTCAGTCCACTTCTGTTT+TGG 0.271836 4:-79087245 None:intergenic
TCTTGAAGAAATCCAAATAT+TGG 0.317518 4:+79085739 MsG0480022957.01.T01:CDS
TGACACACCCCAATGCCTTT+AGG 0.351671 4:+79085796 MsG0480022957.01.T01:CDS
GACTCACAATGGCATCAAAA+AGG 0.367535 4:-79087085 None:intergenic
CCTTACAACACCGGCTTGTA+AGG 0.369186 4:-79085334 None:intergenic
CAGGTCAAACACAAGCTTCC+AGG 0.383103 4:+79087353 MsG0480022957.01.T01:CDS
CGTAGGAACCTAAAGGCATT+GGG 0.388704 4:-79085804 None:intergenic
AAGGCATTGGGGTGTGTCAT+AGG 0.398620 4:-79085792 None:intergenic
AGGATGCTGTTAATATGCTT+TGG 0.404147 4:+79087327 MsG0480022957.01.T01:CDS
GGTACTGGAATTCATAATGA+TGG 0.425117 4:-79087292 None:intergenic
TGTTAATATGCTTTGGAGAC+AGG 0.426963 4:+79087334 MsG0480022957.01.T01:CDS
TTCAAATTAGACATTCCCTT+AGG 0.428467 4:-79085876 None:intergenic
TAATCAATCTCATCCTCAAA+AGG 0.436131 4:-79087146 None:intergenic
TCTACTTGTAACCCATGTTC+AGG 0.441564 4:-79085300 None:intergenic
GGCCTTGTCTCTTCCGATGT+GGG 0.457150 4:-79085279 None:intergenic
GGCATTACAGCCTGGCTACA+TGG 0.464917 4:+79087202 MsG0480022957.01.T01:CDS
ATTTGATCACTCACAATGAC+TGG 0.475884 4:-79087116 None:intergenic
TTCAAAGAGGCATTACAGCC+TGG 0.487772 4:+79087194 MsG0480022957.01.T01:CDS
CATTAGCTATGATAGAGACT+TGG 0.492107 4:+79085229 None:intergenic
TCAAATTAGACATTCCCTTA+GGG 0.498198 4:-79085875 None:intergenic
CTGGTGTTAGGTTGATCTGA+TGG 0.498628 4:+79085713 MsG0480022957.01.T01:intron
AAATATTGGCAGAGGTCTAA+AGG 0.501500 4:+79085753 MsG0480022957.01.T01:CDS
TATCATTCAATTGATTTCGT+AGG 0.502088 4:-79085821 None:intergenic
TATGAGCGAAGTGTTGCAAC+AGG 0.503613 4:+79086332 MsG0480022957.01.T01:CDS
TCGTAGGAACCTAAAGGCAT+TGG 0.503794 4:-79085805 None:intergenic
GATGATGGTGTGTCTCCTGC+TGG 0.505695 4:-79087056 None:intergenic
TTGATTTCGTAGGAACCTAA+AGG 0.507378 4:-79085811 None:intergenic
GAATCCACAACATGAACATA+CGG 0.508623 4:-79085915 None:intergenic
CATTGTCCGTGCTAAACTGA+TGG 0.511811 4:+79086280 MsG0480022957.01.T01:CDS
TTTGTTCTTCTCTTTCAAAG+AGG 0.513727 4:+79087181 MsG0480022957.01.T01:CDS
ATGATACAACAGTCATCTAA+AGG 0.516200 4:+79087005 MsG0480022957.01.T01:intron
AGCTGGTCAACCATGTAGCC+AGG 0.520294 4:-79087212 None:intergenic
AAGTTCTGTTTGCATCCAGC+AGG 0.523942 4:+79087041 MsG0480022957.01.T01:CDS
TGATACTATTCAAGTTGTTG+TGG 0.526811 4:+79085839 MsG0480022957.01.T01:CDS
TAGACATTCCCTTAGGGTAG+CGG 0.529225 4:-79085869 None:intergenic
AGGTCAAACACAAGCTTCCA+GGG 0.534742 4:+79087354 MsG0480022957.01.T01:CDS
AATCAATCTCATCCTCAAAA+GGG 0.541106 4:-79087145 None:intergenic
AGGCCTTGTCTCTTCCGATG+TGG 0.542376 4:-79085280 None:intergenic
GTAAAGTTCCAAAACAGAAG+TGG 0.546616 4:+79087237 MsG0480022957.01.T01:CDS
GTGGACTGAAATGTGGAGGC+AGG 0.549173 4:+79087256 MsG0480022957.01.T01:CDS
CGAATCTCGTACGGATCTTG+AGG 0.549607 4:-79085954 None:intergenic
AGTGTGGAGCGAATCTCGTA+CGG 0.553714 4:-79085963 None:intergenic
TATGAATAGAGTGTGACCCC+TGG 0.561453 4:-79087371 None:intergenic
ATTAGCTATGATAGAGACTT+GGG 0.567705 4:+79085230 None:intergenic
GTACTGGAATTCATAATGAT+GGG 0.569866 4:-79087291 None:intergenic
AATCCACAACATGAACATAC+GGG 0.584521 4:-79085914 None:intergenic
AGAAATCCAAATATTGGCAG+AGG 0.585239 4:+79085745 MsG0480022957.01.T01:CDS
ATTGTCCGTGCTAAACTGAT+GGG 0.588872 4:+79086281 MsG0480022957.01.T01:CDS
GAAGAGACAAGGCCTGAACA+TGG 0.590086 4:+79085288 MsG0480022957.01.T01:CDS
AACAGAAGTGGACTGAAATG+TGG 0.594850 4:+79087249 MsG0480022957.01.T01:CDS
GTCCCCGTATGTTCATGTTG+TGG 0.595331 4:+79085911 MsG0480022957.01.T01:CDS
TGAACATGGGTTACAAGTAG+AGG 0.598926 4:+79085302 MsG0480022957.01.T01:CDS
GTCCCACATCGGAAGAGACA+AGG 0.600063 4:+79085277 MsG0480022957.01.T01:CDS
TCGAGGGAGGACTTTCAGGA+AGG 0.609417 4:+79085995 MsG0480022957.01.T01:CDS
GCAGTCTTCACCTTACAAGC+CGG 0.621261 4:+79085324 MsG0480022957.01.T01:CDS
GTCTAATTTGAATAAAGATG+TGG 0.629262 4:+79085887 MsG0480022957.01.T01:CDS
AAGAGACAAGGCCTGAACAT+GGG 0.647838 4:+79085289 MsG0480022957.01.T01:CDS
GATGTGGGACTCTTAACAGT+GGG 0.650146 4:-79085264 None:intergenic
CACTGTTAAGAGTCCCACAT+CGG 0.654167 4:+79085266 MsG0480022957.01.T01:CDS
CTAACTCAGCCTTACAACAC+CGG 0.660851 4:-79085343 None:intergenic
AACAGGAGCAAACATAAAAG+CGG 0.673543 4:+79086349 MsG0480022957.01.T01:CDS
AGAAGTGGACTGAAATGTGG+AGG 0.674582 4:+79087252 MsG0480022957.01.T01:CDS
ATATACCCATCAGTTTAGCA+CGG 0.676515 4:-79086286 None:intergenic
TGGAACACAGTGACTCACAA+TGG 0.680701 4:-79087096 None:intergenic
CGATGTGGGACTCTTAACAG+TGG 0.688145 4:-79085265 None:intergenic
CCCTCGAAAGAAAAGCAGTG+TGG 0.694397 4:-79085979 None:intergenic
GTAGGAACCTAAAGGCATTG+GGG 0.709481 4:-79085803 None:intergenic
AAACTGATGGGTATATTGAG+TGG 0.712698 4:+79086293 MsG0480022957.01.T01:CDS
GGTGTGTCATAGGAAATACA+TGG 0.712760 4:-79085782 None:intergenic
ATCCACAACATGAACATACG+GGG 0.720725 4:-79085913 None:intergenic
GGTCAAACACAAGCTTCCAG+GGG 0.733871 4:+79087355 MsG0480022957.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTCAAATTAAATAAAAGA+TGG - Chr4:79086120-79086139 None:intergenic 10.0%
!!! TATGCATAAAAAAATATTTT+TGG + Chr4:79086738-79086757 MsG0480022957.01.T01:intron 10.0%
!! TTTGGATAATTTAGATAATA+GGG + Chr4:79086543-79086562 MsG0480022957.01.T01:intron 15.0%
!!! AAATTATTTTCCTCTTTTTA+AGG - Chr4:79086525-79086544 None:intergenic 15.0%
!!! AATTATTTTCCTCTTTTTAA+GGG - Chr4:79086524-79086543 None:intergenic 15.0%
!!! TAAAAAGAGGAAAATAATTT+TGG + Chr4:79086525-79086544 MsG0480022957.01.T01:intron 15.0%
!!! TTCTATTTTGATGTTATATT+GGG + Chr4:79085683-79085702 MsG0480022957.01.T01:intron 15.0%
!!! TTTCTATTTTGATGTTATAT+TGG + Chr4:79085682-79085701 MsG0480022957.01.T01:intron 15.0%
!!! TTTTGGATAATTTAGATAAT+AGG + Chr4:79086542-79086561 MsG0480022957.01.T01:intron 15.0%
!! ACATTTCATTGAATTTAAGA+AGG - Chr4:79086227-79086246 None:intergenic 20.0%
!! TGGTAATTATTTCCTAAAAT+GGG + Chr4:79086439-79086458 MsG0480022957.01.T01:intron 20.0%
!!! AAAAGTTTGTCTTTAAAAGT+TGG + Chr4:79086080-79086099 MsG0480022957.01.T01:intron 20.0%
! ACTGACTGTTAATAAAAGAA+TGG + Chr4:79086029-79086048 MsG0480022957.01.T01:intron 25.0%
! ATAAAAACTGCTCTATTTCA+AGG + Chr4:79086821-79086840 MsG0480022957.01.T01:intron 25.0%
! ATCATAAAGATAGTTTGATG+GGG - Chr4:79085510-79085529 None:intergenic 25.0%
! CAAAAGAGTTATACAGTTAT+AGG - Chr4:79085662-79085681 None:intergenic 25.0%
! CATCATAAAGATAGTTTGAT+GGG - Chr4:79085511-79085530 None:intergenic 25.0%
! CTGGTAATTATTTCCTAAAA+TGG + Chr4:79086438-79086457 MsG0480022957.01.T01:intron 25.0%
! CTTACCAGCTAAAAATAAAA+AGG - Chr4:79086701-79086720 None:intergenic 25.0%
! GTCTAATTTGAATAAAGATG+TGG + Chr4:79085887-79085906 MsG0480022957.01.T01:CDS 25.0%
! TAAAAACTGCTCTATTTCAA+GGG + Chr4:79086822-79086841 MsG0480022957.01.T01:intron 25.0%
! TAGAGATAATATCACTTTAG+AGG + Chr4:79086193-79086212 MsG0480022957.01.T01:intron 25.0%
! TAGGAAATAATTACCAGTAA+TGG - Chr4:79086435-79086454 None:intergenic 25.0%
! TAGTAACTGATATTACCAAA+AGG - Chr4:79086867-79086886 None:intergenic 25.0%
! TCTTGAAGAAATCCAAATAT+TGG + Chr4:79085739-79085758 MsG0480022957.01.T01:CDS 25.0%
! TTGTTAAAAAATCACAATGC+AGG - Chr4:79085610-79085629 None:intergenic 25.0%
!! AAAATCAATCTTCCCATTTT+AGG - Chr4:79086454-79086473 None:intergenic 25.0%
!! TATCATTCAATTGATTTCGT+AGG - Chr4:79085824-79085843 None:intergenic 25.0%
!! TCAATGAAATGTGATTTTGT+GGG + Chr4:79086235-79086254 MsG0480022957.01.T01:intron 25.0%
!! TTCAATGAAATGTGATTTTG+TGG + Chr4:79086234-79086253 MsG0480022957.01.T01:intron 25.0%
!!! CTTTCCTTTTTATTTTTAGC+TGG + Chr4:79086694-79086713 MsG0480022957.01.T01:intron 25.0%
AATCAATCTCATCCTCAAAA+GGG - Chr4:79087148-79087167 None:intergenic 30.0%
AGAATGGCACATTTCTTAAA+AGG + Chr4:79086045-79086064 MsG0480022957.01.T01:intron 30.0%
ATAAAAAGGAAAGAACCCTT+CGG - Chr4:79086687-79086706 None:intergenic 30.0%
ATATTTCTTGATGAAGAGAG+AGG + Chr4:79086886-79086905 MsG0480022957.01.T01:intron 30.0%
ATCAAGTAGTATCAGATGTT+TGG + Chr4:79085391-79085410 MsG0480022957.01.T01:intron 30.0%
ATCTTAGCAGATAAGAAAAG+GGG - Chr4:79086955-79086974 None:intergenic 30.0%
ATGATACAACAGTCATCTAA+AGG + Chr4:79087005-79087024 MsG0480022957.01.T01:intron 30.0%
GATCTTAGCAGATAAGAAAA+GGG - Chr4:79086956-79086975 None:intergenic 30.0%
GCATCATAAAGATAGTTTGA+TGG - Chr4:79085512-79085531 None:intergenic 30.0%
GTACTGGAATTCATAATGAT+GGG - Chr4:79087294-79087313 None:intergenic 30.0%
TAATCAATCTCATCCTCAAA+AGG - Chr4:79087149-79087168 None:intergenic 30.0%
TATTACCAAAAGGAAGTTTC+AGG - Chr4:79086857-79086876 None:intergenic 30.0%
TCAAATTAGACATTCCCTTA+GGG - Chr4:79085878-79085897 None:intergenic 30.0%
TCACTTCTCACTAAATACAT+TGG + Chr4:79086797-79086816 MsG0480022957.01.T01:intron 30.0%
TCTTCATTATCAGTTGACAA+AGG + Chr4:79086491-79086510 MsG0480022957.01.T01:intron 30.0%
TGATCTTAGCAGATAAGAAA+AGG - Chr4:79086957-79086976 None:intergenic 30.0%
TTCAAATTAGACATTCCCTT+AGG - Chr4:79085879-79085898 None:intergenic 30.0%
TTTAAAAGTTGGCAAGTAAG+GGG + Chr4:79086091-79086110 MsG0480022957.01.T01:intron 30.0%
TTTGTTCTTCTCTTTCAAAG+AGG + Chr4:79087181-79087200 MsG0480022957.01.T01:CDS 30.0%
! CAATGAAATGTGATTTTGTG+GGG + Chr4:79086236-79086255 MsG0480022957.01.T01:intron 30.0%
! CTTTAAAAGTTGGCAAGTAA+GGG + Chr4:79086090-79086109 MsG0480022957.01.T01:intron 30.0%
! TCTTTAAAAGTTGGCAAGTA+AGG + Chr4:79086089-79086108 MsG0480022957.01.T01:intron 30.0%
! TTTGTCAACTGATAATGAAG+AGG - Chr4:79086492-79086511 None:intergenic 30.0%
!! TGATACTATTCAAGTTGTTG+TGG + Chr4:79085839-79085858 MsG0480022957.01.T01:CDS 30.0%
!!! ATTCAAGTTGTTGTGGATTT+TGG + Chr4:79085846-79085865 MsG0480022957.01.T01:CDS 30.0%
!!! GTGATTTTTTAACAAGTGCA+GGG + Chr4:79085615-79085634 MsG0480022957.01.T01:intron 30.0%
!!! TGTGATTTTTTAACAAGTGC+AGG + Chr4:79085614-79085633 MsG0480022957.01.T01:intron 30.0%
AAAAAATCACAATGCAGGTG+CGG - Chr4:79085605-79085624 None:intergenic 35.0%
AAATATTGGCAGAGGTCTAA+AGG + Chr4:79085753-79085772 MsG0480022957.01.T01:CDS 35.0%
AACAGGAGCAAACATAAAAG+CGG + Chr4:79086349-79086368 MsG0480022957.01.T01:CDS 35.0%
AATCCACAACATGAACATAC+GGG - Chr4:79085917-79085936 None:intergenic 35.0%
ACATCTGATACTACTTGATG+TGG - Chr4:79085390-79085409 None:intergenic 35.0%
AGAAATCCAAATATTGGCAG+AGG + Chr4:79085745-79085764 MsG0480022957.01.T01:CDS 35.0%
AGGATGCTGTTAATATGCTT+TGG + Chr4:79087327-79087346 MsG0480022957.01.T01:CDS 35.0%
ATACTACTTGATGTGGGTAT+TGG - Chr4:79085383-79085402 None:intergenic 35.0%
ATATACCCATCAGTTTAGCA+CGG - Chr4:79086289-79086308 None:intergenic 35.0%
ATTATCAGTTGACAAAGGTG+AGG + Chr4:79086496-79086515 MsG0480022957.01.T01:intron 35.0%
ATTTGATCACTCACAATGAC+TGG - Chr4:79087119-79087138 None:intergenic 35.0%
CATCTGATACTACTTGATGT+GGG - Chr4:79085389-79085408 None:intergenic 35.0%
CCAGTAATGGTTTGAGTAAA+AGG - Chr4:79086422-79086441 None:intergenic 35.0%
GAATCCACAACATGAACATA+CGG - Chr4:79085918-79085937 None:intergenic 35.0%
GATAAGAAAAGGGGAATAAC+AGG - Chr4:79086946-79086965 None:intergenic 35.0%
GTAAAGTTCCAAAACAGAAG+TGG + Chr4:79087237-79087256 MsG0480022957.01.T01:CDS 35.0%
TCAAATGAATCGTTTCCGAA+GGG + Chr4:79086669-79086688 MsG0480022957.01.T01:intron 35.0%
TTGATTTCGTAGGAACCTAA+AGG - Chr4:79085814-79085833 None:intergenic 35.0%
TTTAGACCTCTGCCAATATT+TGG - Chr4:79085754-79085773 None:intergenic 35.0%
! AAACTGATGGGTATATTGAG+TGG + Chr4:79086293-79086312 MsG0480022957.01.T01:CDS 35.0%
! ATCGAGGAGTACAGAATATT+TGG - Chr4:79085453-79085472 None:intergenic 35.0%
! ATTTCAGTCCACTTCTGTTT+TGG - Chr4:79087248-79087267 None:intergenic 35.0%
! CCTTTTACTCAAACCATTAC+TGG + Chr4:79086419-79086438 MsG0480022957.01.T01:intron 35.0%
! GAATATTTGGTGGAGTACTT+AGG - Chr4:79085440-79085459 None:intergenic 35.0%
! GAGATGCATTTTGCTCTTTA+TGG + Chr4:79086646-79086665 MsG0480022957.01.T01:intron 35.0%
! GGTACTGGAATTCATAATGA+TGG - Chr4:79087295-79087314 None:intergenic 35.0%
! TCAAATTGAACTCCCTTTTG+AGG + Chr4:79087133-79087152 MsG0480022957.01.T01:CDS 35.0%
! TTAACAGCATCCTCTCTTTT+TGG - Chr4:79087320-79087339 None:intergenic 35.0%
!! TATCAGATGTTTGGTGTCAA+GGG + Chr4:79085400-79085419 MsG0480022957.01.T01:intron 35.0%
!! TGATGTGGGTATTGGAATTT+GGG - Chr4:79085375-79085394 None:intergenic 35.0%
!! TGTTAATATGCTTTGGAGAC+AGG + Chr4:79087334-79087353 MsG0480022957.01.T01:CDS 35.0%
!! TTGATGTGGGTATTGGAATT+TGG - Chr4:79085376-79085395 None:intergenic 35.0%
!!! ATTTTTAGCTGGTAAGATGC+AGG + Chr4:79086705-79086724 MsG0480022957.01.T01:intron 35.0%
AAGATAGTTTGATGGGGACT+AGG - Chr4:79085504-79085523 None:intergenic 40.0%
ATATTCTGTACTCCTCGATG+TGG + Chr4:79085454-79085473 MsG0480022957.01.T01:intron 40.0%
ATCCACAACATGAACATACG+GGG - Chr4:79085916-79085935 None:intergenic 40.0%
ATGCTCAGACTCAGAACAAA+TGG - Chr4:79086617-79086636 None:intergenic 40.0%
ATTGTCCGTGCTAAACTGAT+GGG + Chr4:79086281-79086300 MsG0480022957.01.T01:CDS 40.0%
CATAAAAGCGGTATGCTATG+TGG + Chr4:79086361-79086380 MsG0480022957.01.T01:intron 40.0%
GACTCACAATGGCATCAAAA+AGG - Chr4:79087088-79087107 None:intergenic 40.0%
GGGACTAGGATATAATGATG+AGG - Chr4:79085490-79085509 None:intergenic 40.0%
GGTGTGTCATAGGAAATACA+TGG - Chr4:79085785-79085804 None:intergenic 40.0%
GTCAAATGAATCGTTTCCGA+AGG + Chr4:79086668-79086687 MsG0480022957.01.T01:intron 40.0%
GTTATACAGTTATAGGCGTC+AGG - Chr4:79085655-79085674 None:intergenic 40.0%
TATGTATCCACCTTGAATCG+TGG - Chr4:79086162-79086181 None:intergenic 40.0%
TATTCTGTACTCCTCGATGT+GGG + Chr4:79085455-79085474 MsG0480022957.01.T01:intron 40.0%
TCAAAAAGGCGACAAGATGA+TGG - Chr4:79087074-79087093 None:intergenic 40.0%
TCTACTTGTAACCCATGTTC+AGG - Chr4:79085303-79085322 None:intergenic 40.0%
TGCTCAGACTCAGAACAAAT+GGG - Chr4:79086616-79086635 None:intergenic 40.0%
TGTTATATTGGGCGTGTTTC+TGG + Chr4:79085694-79085713 MsG0480022957.01.T01:intron 40.0%
! GAGAACCTGAAACTTCCTTT+TGG + Chr4:79086849-79086868 MsG0480022957.01.T01:intron 40.0%
! GAGGAGTACAGAATATTTGG+TGG - Chr4:79085450-79085469 None:intergenic 40.0%
! TGAACATGGGTTACAAGTAG+AGG + Chr4:79085302-79085321 MsG0480022957.01.T01:CDS 40.0%
!! AACAGAAGTGGACTGAAATG+TGG + Chr4:79087249-79087268 MsG0480022957.01.T01:CDS 40.0%
!! ATCAGATGTTTGGTGTCAAG+GGG + Chr4:79085401-79085420 MsG0480022957.01.T01:intron 40.0%
!! GTATCAGATGTTTGGTGTCA+AGG + Chr4:79085399-79085418 MsG0480022957.01.T01:intron 40.0%
!! TGGGTATTGGAATTTGGGTT+GGG - Chr4:79085370-79085389 None:intergenic 40.0%
!!! GTTTTGGAACTTTACGAAGC+TGG - Chr4:79087232-79087251 None:intergenic 40.0%
AAGAGACAAGGCCTGAACAT+GGG + Chr4:79085289-79085308 MsG0480022957.01.T01:CDS 45.0%
AAGTTCTGTTTGCATCCAGC+AGG + Chr4:79087041-79087060 MsG0480022957.01.T01:CDS 45.0%
AGGTCAAACACAAGCTTCCA+GGG + Chr4:79087354-79087373 MsG0480022957.01.T01:CDS 45.0%
CACTGTTAAGAGTCCCACAT+CGG + Chr4:79085266-79085285 MsG0480022957.01.T01:CDS 45.0%
CATTGTCCGTGCTAAACTGA+TGG + Chr4:79086280-79086299 MsG0480022957.01.T01:CDS 45.0%
CTAACTCAGCCTTACAACAC+CGG - Chr4:79085346-79085365 None:intergenic 45.0%
GATGTGGGACTCTTAACAGT+GGG - Chr4:79085267-79085286 None:intergenic 45.0%
GGTGAGGATCCCTTAAAAAG+AGG + Chr4:79086512-79086531 MsG0480022957.01.T01:intron 45.0%
GGTTTGTGATGTTTGCAGGA+AGG + Chr4:79086257-79086276 MsG0480022957.01.T01:intron 45.0%
TAGACATTCCCTTAGGGTAG+CGG - Chr4:79085872-79085891 None:intergenic 45.0%
TATGAATAGAGTGTGACCCC+TGG - Chr4:79087374-79087393 None:intergenic 45.0%
TCTCAACTCACCACGATTCA+AGG + Chr4:79086149-79086168 MsG0480022957.01.T01:intron 45.0%
TGGAACACAGTGACTCACAA+TGG - Chr4:79087099-79087118 None:intergenic 45.0%
! ACAGCATCCTCTCTTTTTGG+AGG - Chr4:79087317-79087336 None:intergenic 45.0%
! CAGCATCCTCTCTTTTTGGA+GGG - Chr4:79087316-79087335 None:intergenic 45.0%
! TCGTAGGAACCTAAAGGCAT+TGG - Chr4:79085808-79085827 None:intergenic 45.0%
!! AGAAGTGGACTGAAATGTGG+AGG + Chr4:79087252-79087271 MsG0480022957.01.T01:CDS 45.0%
!! CCACACTGCTTTTCTTTCGA+GGG + Chr4:79085979-79085998 MsG0480022957.01.T01:CDS 45.0%
!! CGTAGGAACCTAAAGGCATT+GGG - Chr4:79085807-79085826 None:intergenic 45.0%
!! CTGGTGTTAGGTTGATCTGA+TGG + Chr4:79085713-79085732 MsG0480022957.01.T01:intron 45.0%
!! GTAGGAACCTAAAGGCATTG+GGG - Chr4:79085806-79085825 None:intergenic 45.0%
!! GTGGGTATTGGAATTTGGGT+TGG - Chr4:79085371-79085390 None:intergenic 45.0%
!! TATGAGCGAAGTGTTGCAAC+AGG + Chr4:79086332-79086351 MsG0480022957.01.T01:CDS 45.0%
!! TCCACACTGCTTTTCTTTCG+AGG + Chr4:79085978-79085997 MsG0480022957.01.T01:CDS 45.0%
!! TTCAAAGAGGCATTACAGCC+TGG + Chr4:79087194-79087213 MsG0480022957.01.T01:CDS 45.0%
AATCACAATGCAGGTGCGGA+AGG - Chr4:79085601-79085620 None:intergenic 50.0%
AGGGACTGAACAGTTGTGTG+TGG + Chr4:79086562-79086581 MsG0480022957.01.T01:intron 50.0%
AGTGTGGAGCGAATCTCGTA+CGG - Chr4:79085966-79085985 None:intergenic 50.0%
CAACTCACCACGATTCAAGG+TGG + Chr4:79086152-79086171 MsG0480022957.01.T01:intron 50.0%
CAGGTCAAACACAAGCTTCC+AGG + Chr4:79087353-79087372 MsG0480022957.01.T01:CDS 50.0%
CCAGTACCCTCCAAAAAGAG+AGG + Chr4:79087307-79087326 MsG0480022957.01.T01:CDS 50.0%
CCCTCGAAAGAAAAGCAGTG+TGG - Chr4:79085982-79086001 None:intergenic 50.0%
CGAATCTCGTACGGATCTTG+AGG - Chr4:79085957-79085976 None:intergenic 50.0%
CGATGTGGGACTCTTAACAG+TGG - Chr4:79085268-79085287 None:intergenic 50.0%
GAAGAGACAAGGCCTGAACA+TGG + Chr4:79085288-79085307 MsG0480022957.01.T01:CDS 50.0%
GCAGTCTTCACCTTACAAGC+CGG + Chr4:79085324-79085343 MsG0480022957.01.T01:CDS 50.0%
GGTCAAACACAAGCTTCCAG+GGG + Chr4:79087355-79087374 MsG0480022957.01.T01:CDS 50.0%
GTCCCCGTATGTTCATGTTG+TGG + Chr4:79085911-79085930 MsG0480022957.01.T01:CDS 50.0%
GTGGGGTTTGTGATGTTTGC+AGG + Chr4:79086253-79086272 MsG0480022957.01.T01:intron 50.0%
TCTTTCGAGGGAGGACTTTC+AGG + Chr4:79085991-79086010 MsG0480022957.01.T01:CDS 50.0%
TGACACACCCCAATGCCTTT+AGG + Chr4:79085796-79085815 MsG0480022957.01.T01:CDS 50.0%
! GGTGGAGTACTTAGGTAGCT+TGG - Chr4:79085432-79085451 None:intergenic 50.0%
!! AAGGCATTGGGGTGTGTCAT+AGG - Chr4:79085795-79085814 None:intergenic 50.0%
!! CACTGCTTTTCTTTCGAGGG+AGG + Chr4:79085982-79086001 MsG0480022957.01.T01:CDS 50.0%
!! CCTCTCTTTTTGGAGGGTAC+TGG - Chr4:79087310-79087329 None:intergenic 50.0%
!! CCTTACAACACCGGCTTGTA+AGG - Chr4:79085337-79085356 None:intergenic 50.0%
!! CCTTACAAGCCGGTGTTGTA+AGG + Chr4:79085334-79085353 MsG0480022957.01.T01:intron 50.0%
!! CGGTGTTGTAAGGCTGAGTT+AGG + Chr4:79085344-79085363 MsG0480022957.01.T01:intron 50.0%
!! GATTTTGGCCGCTACCCTAA+GGG + Chr4:79085861-79085880 MsG0480022957.01.T01:CDS 50.0%
!! TTGGGCGTGTTTCTGGTGTT+AGG + Chr4:79085701-79085720 MsG0480022957.01.T01:intron 50.0%
AGCTGGTCAACCATGTAGCC+AGG - Chr4:79087215-79087234 None:intergenic 55.0%
GGCATTACAGCCTGGCTACA+TGG + Chr4:79087202-79087221 MsG0480022957.01.T01:CDS 55.0%
GGCTCTTAAGTCCCACATCG+AGG - Chr4:79085469-79085488 None:intergenic 55.0%
GTCCCACATCGGAAGAGACA+AGG + Chr4:79085277-79085296 MsG0480022957.01.T01:CDS 55.0%
TCGAGGGAGGACTTTCAGGA+AGG + Chr4:79085995-79086014 MsG0480022957.01.T01:CDS 55.0%
! AGGCCTTGTCTCTTCCGATG+TGG - Chr4:79085283-79085302 None:intergenic 55.0%
! GATGATGGTGTGTCTCCTGC+TGG - Chr4:79087059-79087078 None:intergenic 55.0%
! GGCCTTGTCTCTTCCGATGT+GGG - Chr4:79085282-79085301 None:intergenic 55.0%
! GTGGACTGAAATGTGGAGGC+AGG + Chr4:79087256-79087275 MsG0480022957.01.T01:CDS 55.0%
!! GGATTTTGGCCGCTACCCTA+AGG + Chr4:79085860-79085879 MsG0480022957.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr4 gene 79085237 79087394 79085237 ID=MsG0480022957.01;Name=MsG0480022957.01
Chr4 mRNA 79085237 79087394 79085237 ID=MsG0480022957.01.T01;Parent=MsG0480022957.01;Name=MsG0480022957.01.T01;_AED=0.44;_eAED=0.51;_QI=0|0|0|1|1|1|4|0|294
Chr4 exon 79085237 79085350 79085237 ID=MsG0480022957.01.T01:exon:6004;Parent=MsG0480022957.01.T01
Chr4 exon 79085723 79086019 79085723 ID=MsG0480022957.01.T01:exon:6005;Parent=MsG0480022957.01.T01
Chr4 exon 79086275 79086370 79086275 ID=MsG0480022957.01.T01:exon:6006;Parent=MsG0480022957.01.T01
Chr4 exon 79087017 79087394 79087017 ID=MsG0480022957.01.T01:exon:6007;Parent=MsG0480022957.01.T01
Chr4 CDS 79085237 79085350 79085237 ID=MsG0480022957.01.T01:cds;Parent=MsG0480022957.01.T01
Chr4 CDS 79085723 79086019 79085723 ID=MsG0480022957.01.T01:cds;Parent=MsG0480022957.01.T01
Chr4 CDS 79086275 79086370 79086275 ID=MsG0480022957.01.T01:cds;Parent=MsG0480022957.01.T01
Chr4 CDS 79087017 79087394 79087017 ID=MsG0480022957.01.T01:cds;Parent=MsG0480022957.01.T01
Gene Sequence

>MsG0480022957.01.T01

ATGATAGAGACTTGGGTATTGTTAAGTCCCACTGTTAAGAGTCCCACATCGGAAGAGACAAGGCCTGAACATGGGTTACAAGTAGAGGCAGTCTTCACCTTACAAGCCGGTGTTGTTGATCTGATGGAATTCTTGAAGAAATCCAAATATTGGCAGAGGTCTAAAGGCAGAGACCATGTATTTCCTATGACACACCCCAATGCCTTTAGGTTCCTACGAAATCAATTGAATGATACTATTCAAGTTGTTGTGGATTTTGGCCGCTACCCTAAGGGAATGTCTAATTTGAATAAAGATGTGGTGTCCCCGTATGTTCATGTTGTGGATTCTTATACAGATGATGAACCTCAAGATCCGTACGAGATTCGCTCCACACTGCTTTTCTTTCGAGGGAGGACTTTCAGGAAGGATGAAGGCATTGTCCGTGCTAAACTGATGGGTATATTGAGTGGTTATAGTGACGTTCACTATGAGCGAAGTGTTGCAACAGGAGCAAACATAAAAGCGTCATCTAAAGGAATGCGTTCATCAAAGTTCTGTTTGCATCCAGCAGGAGACACACCATCATCTTGTCGCCTTTTTGATGCCATTGTGAGTCACTGTGTTCCAGTCATTGTGAGTGATCAAATTGAACTCCCTTTTGAGGATGAGATTGATTACTCGCAGTTCTCTTTGTTCTTCTCTTTCAAAGAGGCATTACAGCCTGGCTACATGGTTGACCAGCTTCGTAAAGTTCCAAAACAGAAGTGGACTGAAATGTGGAGGCAGGTTAAAAACATCTCCCATCATTATGAATTCCAGTACCCTCCAAAAAGAGAGGATGCTGTTAATATGCTTTGGAGACAGGTCAAACACAAGCTTCCAGGGGTCACACTCTATTCATAG
Protein sequence

>MsG0480022957.01.T01

MIETWVLLSPTVKSPTSEETRPEHGLQVEAVFTLQAGVVDLMEFLKKSKYWQRSKGRDHVFPMTHPNAFRFLRNQLNDTIQVVVDFGRYPKGMSNLNKDVVSPYVHVVDSYTDDEPQDPYEIRSTLLFFRGRTFRKDEGIVRAKLMGILSGYSDVHYERSVATGANIKASSKGMRSSKFCLHPAGDTPSSCRLFDAIVSHCVPVIVSDQIELPFEDEIDYSQFSLFFSFKEALQPGYMVDQLRKVPKQKWTEMWRQVKNISHHYEFQYPPKREDAVNMLWRQVKHKLPGVTLYS*