AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022970.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022970.01.T01 MTR_8g080770 76.950 282 10 2 1 261 1 248 2.25e-143 427
MsG0480022970.01.T01 MTR_3g085130 65.957 282 41 2 1 261 56 303 9.90e-119 364
MsG0480022970.01.T01 MTR_8g080770 75.714 140 0 1 122 261 34 139 1.49e-61 208
MsG0480022970.01.T01 MTR_5g097410 43.233 266 89 5 19 261 247 473 7.23e-61 208
MsG0480022970.01.T01 MTR_8g106150 39.676 247 78 3 36 261 41 237 1.48e-49 176
MsG0480022970.01.T01 MTR_3g085130 62.992 127 13 1 135 261 1 93 5.88e-44 159
MsG0480022970.01.T01 MTR_2g067240 61.364 44 17 0 218 261 5 48 4.31e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022970.01.T01 AT1G27320 55.319 282 69 3 1 261 61 306 2.86e-88 283
MsG0480022970.01.T01 AT5G35750 46.800 250 75 4 34 261 230 443 1.97e-63 216
MsG0480022970.01.T01 AT2G01830 38.372 258 89 3 31 267 101 309 2.44e-50 178
MsG0480022970.01.T01 AT2G01830 38.372 258 89 3 31 267 101 309 2.44e-50 178
MsG0480022970.01.T01 AT2G01830 38.372 258 89 3 31 267 101 309 2.44e-50 178
MsG0480022970.01.T01 AT2G01830 38.372 258 89 3 31 267 101 309 2.44e-50 178
MsG0480022970.01.T01 AT2G01830 38.372 258 89 3 31 267 124 332 2.68e-50 178
MsG0480022970.01.T01 AT2G01830 38.372 258 89 3 31 267 113 321 3.45e-50 177

Find 78 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTAAATTTAATCTATT+TGG 0.136484 4:+79283687 MsG0480022970.01.T01:five_prime_UTR
ATTTCTGTTGATATGCTTTC+TGG 0.198728 4:+79284793 MsG0480022970.01.T01:CDS
ACCAGTTAGTAGTAGAAAAT+TGG 0.238353 4:+79283798 MsG0480022970.01.T01:five_prime_UTR
ATCAATTTCTGTTGAGAGTT+AGG 0.255426 4:+79283577 MsG0480022970.01.T01:five_prime_UTR
CAACAGTACTGTCAGTATAT+TGG 0.273915 4:+79283957 MsG0480022970.01.T01:CDS
TTCCTATTGGCCCCTCCTTT+TGG 0.287596 4:+79283521 MsG0480022970.01.T01:five_prime_UTR
CGATTATGCTGTAGAGGAAT+TGG 0.327475 4:+79284705 MsG0480022970.01.T01:CDS
GTTGCTTGAATCCTTTCATT+TGG 0.333595 4:-79285286 None:intergenic
TCATTTGGAGTTGCATTTGA+TGG 0.357590 4:-79285271 None:intergenic
ATAAAGGAATGATAAGATTC+TGG 0.357594 4:-79283602 None:intergenic
AACAGTACTGTCAGTATATT+GGG 0.360120 4:+79283958 MsG0480022970.01.T01:CDS
ATTGGAGCCATCCCCTCTTC+AGG 0.361853 4:+79284723 MsG0480022970.01.T01:CDS
AAAGAAAAGAGAAATAATTA+AGG 0.368500 4:-79283745 None:intergenic
AAATAGACATAGCTTGAATA+TGG 0.369912 4:-79284169 None:intergenic
GCATAATCGTTCTTATGAAC+TGG 0.371534 4:-79284691 None:intergenic
GAAAGGATTCAAGCAACTAA+TGG 0.381749 4:+79285292 MsG0480022970.01.T01:CDS
ACCCTTATAAAATAAAATAA+AGG 0.390649 4:-79283618 None:intergenic
TCGAGTCAGATAGGACTATA+TGG 0.393576 4:+79285065 MsG0480022970.01.T01:CDS
GTGTTGCGTGCAAGAGAATC+AGG 0.399039 4:+79285158 MsG0480022970.01.T01:CDS
CAGAACCACGCGAGTGTTCA+AGG 0.407862 4:-79283402 None:intergenic
CATTTGGAGTTGCATTTGAT+GGG 0.418173 4:-79285270 None:intergenic
GTTGGACTGTAGTGTCTTTG+TGG 0.426681 4:+79284036 MsG0480022970.01.T01:CDS
AAAGGATTCAAGCAACTAAT+GGG 0.437942 4:+79285293 MsG0480022970.01.T01:CDS
TGAAAGGGCTAGGATTGTTC+AGG 0.438583 4:+79284124 MsG0480022970.01.T01:CDS
CTATTTGTTATTATGTTGTC+AGG 0.440816 4:-79283553 None:intergenic
ACAAATTCATCGAGTCAGAT+AGG 0.450236 4:+79285056 MsG0480022970.01.T01:CDS
TTAAATTTAATCTATTTGGT+TGG 0.468106 4:+79283691 MsG0480022970.01.T01:five_prime_UTR
ATACAAAGATGTGGCTGAAA+TGG 0.468585 4:+79283898 MsG0480022970.01.T01:exon
TGTTGTAAGTATTCATTAAG+TGG 0.468911 4:+79283867 MsG0480022970.01.T01:five_prime_UTR
AGGTTGGATTATTAAGAGAA+TGG 0.472979 4:+79284651 MsG0480022970.01.T01:CDS
GAAAATAAGTACCTGATCAA+TGG 0.475341 4:-79284228 None:intergenic
TACCAAAAGGAGGGGCCAAT+AGG 0.475422 4:-79283523 None:intergenic
TCTTGTAGACGGCAAATGTA+AGG 0.478724 4:-79285238 None:intergenic
TGCTAGCATGTGTGATGAAA+GGG 0.486559 4:+79284109 MsG0480022970.01.T01:CDS
CTTCTCAAATCAAATCGGTT+AGG 0.491529 4:+79285209 MsG0480022970.01.T01:CDS
GAGTCCCTCAGCCATTGATC+AGG 0.494009 4:+79284217 MsG0480022970.01.T01:CDS
TCAGGCTTCTCAAATCAAAT+CGG 0.494173 4:+79285204 MsG0480022970.01.T01:CDS
TGTTGACATGGGTATTGGGT+TGG 0.494780 4:+79284018 MsG0480022970.01.T01:CDS
TGTTGATATGCTTTCTGGAA+AGG 0.498415 4:+79284798 MsG0480022970.01.T01:CDS
AGAGAGTGAAGAGAGAGTTG+TGG 0.498961 4:+79283985 MsG0480022970.01.T01:CDS
GAGAATTTGCAAAGAGAGAG+AGG 0.500343 4:-79283290 None:intergenic
AAGACAGCATCTTATTATCA+AGG 0.509239 4:+79283716 MsG0480022970.01.T01:five_prime_UTR
GATATGCTTTCTGGAAAGGT+AGG 0.519976 4:+79284802 MsG0480022970.01.T01:CDS
GTGCAAGAGAATCAGGCAAA+GGG 0.525841 4:+79285165 MsG0480022970.01.T01:CDS
GTCAGGTAGCAGCTACCAAA+AGG 0.526621 4:-79283536 None:intergenic
CTCTAGCATGAACTAACTGC+AGG 0.531152 4:-79283456 None:intergenic
GCATGTGTGATGAAAGGGCT+AGG 0.544298 4:+79284114 MsG0480022970.01.T01:CDS
TGTCGTGTACGATGTCATAT+TGG 0.548144 4:+79284446 MsG0480022970.01.T01:CDS
AATTTGAGAAGCAACAAGGT+TGG 0.555193 4:+79284635 MsG0480022970.01.T01:CDS
GTATCTTGTGCAAATATGAC+AGG 0.555330 4:-79284757 None:intergenic
CAAAGATGTGGCTGAAATGG+TGG 0.559449 4:+79283901 MsG0480022970.01.T01:exon
ATTTGATTTGAGAAGCCTGA+AGG 0.561335 4:-79285201 None:intergenic
CAAATGCAACTCCAAATGAA+AGG 0.563584 4:+79285275 MsG0480022970.01.T01:CDS
TTGCTAGCATGTGTGATGAA+AGG 0.564904 4:+79284108 MsG0480022970.01.T01:CDS
AAGTACCTGATCAATGGCTG+AGG 0.566544 4:-79284222 None:intergenic
TATTCTTCCTGAAGAGGGGA+TGG 0.575235 4:-79284730 None:intergenic
GAGCATATTCTTCCTGAAGA+GGG 0.577257 4:-79284735 None:intergenic
GGACAGAGTCACAGAGACAA+TGG 0.588828 4:+79283229 MsG0480022970.01.T01:five_prime_UTR
GGAGCATATTCTTCCTGAAG+AGG 0.594545 4:-79284736 None:intergenic
TTTGATTTGAGAAGCCTGAA+GGG 0.594834 4:-79285200 None:intergenic
TAAGAACGATTATGCTGTAG+AGG 0.600889 4:+79284699 MsG0480022970.01.T01:CDS
CGTGCAAGAGAATCAGGCAA+AGG 0.602570 4:+79285164 MsG0480022970.01.T01:CDS
AGGTAGCAGCTACCAAAAGG+AGG 0.609218 4:-79283533 None:intergenic
GTTTACAAGCTACTGAGAAG+AGG 0.609832 4:+79284075 MsG0480022970.01.T01:CDS
GGTAGCAGCTACCAAAAGGA+GGG 0.612615 4:-79283532 None:intergenic
GTTATATTCACTTGTTCACA+AGG 0.615176 4:+79285121 MsG0480022970.01.T01:CDS
ATTTGGAGTTGCATTTGATG+GGG 0.629578 4:-79285269 None:intergenic
GGGAAGATATCTCTTGTAGA+CGG 0.632202 4:-79285249 None:intergenic
GAACAATTTGAGAAGCAACA+AGG 0.640709 4:+79284631 MsG0480022970.01.T01:CDS
AGTACCTGATCAATGGCTGA+GGG 0.641644 4:-79284221 None:intergenic
AGCATATTCTTCCTGAAGAG+GGG 0.643515 4:-79284734 None:intergenic
GTAGCAGCTACCAAAAGGAG+GGG 0.646610 4:-79283531 None:intergenic
GAGTCACATATACAAAGATG+TGG 0.657158 4:+79283889 MsG0480022970.01.T01:exon
TCTAGCATGAACTAACTGCA+GGG 0.666189 4:-79283455 None:intergenic
TTGCACGCAACACATTATCA+CGG 0.668088 4:-79285148 None:intergenic
AAAGATGTGGCTGAAATGGT+GGG 0.675883 4:+79283902 MsG0480022970.01.T01:exon
TGCAAGAGAATCAGGCAAAG+GGG 0.689158 4:+79285166 MsG0480022970.01.T01:CDS
TCAAACCTTGAACACTCGCG+TGG 0.695853 4:+79283397 MsG0480022970.01.T01:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCTTAAATTTAATCTATT+TGG + Chr4:79283687-79283706 MsG0480022970.01.T01:five_prime_UTR 10.0%
!!! TCCTTTATTTTATTTTATAA+GGG + Chr4:79283617-79283636 MsG0480022970.01.T01:five_prime_UTR 10.0%
!!! TTCCTTTATTTTATTTTATA+AGG + Chr4:79283616-79283635 MsG0480022970.01.T01:five_prime_UTR 10.0%
!! AAAATCTTAATTGTTTGATT+GGG + Chr4:79284489-79284508 MsG0480022970.01.T01:intron 15.0%
!! AAAGAAAAGAGAAATAATTA+AGG - Chr4:79283748-79283767 None:intergenic 15.0%
!! ACCCTTATAAAATAAAATAA+AGG - Chr4:79283621-79283640 None:intergenic 15.0%
!! TAAAATCTTAATTGTTTGAT+TGG + Chr4:79284488-79284507 MsG0480022970.01.T01:intron 15.0%
!! TTAAATTTAATCTATTTGGT+TGG + Chr4:79283691-79283710 MsG0480022970.01.T01:five_prime_UTR 15.0%
!!! GTTTCTTGTTAAATTTTTTA+AGG + Chr4:79284837-79284856 MsG0480022970.01.T01:intron 15.0%
!!! CAATAATATATTTTCTCAAC+TGG + Chr4:79283199-79283218 MsG0480022970.01.T01:five_prime_UTR 20.0%
! AAATAGACATAGCTTGAATA+TGG - Chr4:79284172-79284191 None:intergenic 25.0%
! ATAAAGGAATGATAAGATTC+TGG - Chr4:79283605-79283624 None:intergenic 25.0%
! CAGATGATTTATCTATTCTA+TGG - Chr4:79284907-79284926 None:intergenic 25.0%
! CTATGGTTTAAATATCCATT+AGG - Chr4:79284890-79284909 None:intergenic 25.0%
! TGTTGTAAGTATTCATTAAG+TGG + Chr4:79283867-79283886 MsG0480022970.01.T01:five_prime_UTR 25.0%
!!! CACAACATTTTTTAGTGATT+AGG + Chr4:79283844-79283863 MsG0480022970.01.T01:five_prime_UTR 25.0%
!!! CTATTTGTTATTATGTTGTC+AGG - Chr4:79283556-79283575 None:intergenic 25.0%
AAAGGATTCAAGCAACTAAT+GGG + Chr4:79285293-79285312 MsG0480022970.01.T01:CDS 30.0%
AACAGTACTGTCAGTATATT+GGG + Chr4:79283958-79283977 MsG0480022970.01.T01:CDS 30.0%
AAGACAGCATCTTATTATCA+AGG + Chr4:79283716-79283735 MsG0480022970.01.T01:five_prime_UTR 30.0%
ACCAGTTAGTAGTAGAAAAT+TGG + Chr4:79283798-79283817 MsG0480022970.01.T01:five_prime_UTR 30.0%
AGGTTGGATTATTAAGAGAA+TGG + Chr4:79284651-79284670 MsG0480022970.01.T01:CDS 30.0%
ATCAATTTCTGTTGAGAGTT+AGG + Chr4:79283577-79283596 MsG0480022970.01.T01:five_prime_UTR 30.0%
ATTTCTGTTGATATGCTTTC+TGG + Chr4:79284793-79284812 MsG0480022970.01.T01:CDS 30.0%
CTAGAACAATCTTTGATCAA+AGG - Chr4:79284284-79284303 None:intergenic 30.0%
CTTTGATCAAAGATTGTTCT+AGG + Chr4:79284282-79284301 MsG0480022970.01.T01:intron 30.0%
GAAAATAAGTACCTGATCAA+TGG - Chr4:79284231-79284250 None:intergenic 30.0%
GTAAGAGCTTCATTATGAAA+GGG + Chr4:79284609-79284628 MsG0480022970.01.T01:intron 30.0%
GTTATATTCACTTGTTCACA+AGG + Chr4:79285121-79285140 MsG0480022970.01.T01:CDS 30.0%
TACAATAGACTTAAATGTCC+TGG + Chr4:79284938-79284957 MsG0480022970.01.T01:intron 30.0%
TGTAAGAGCTTCATTATGAA+AGG + Chr4:79284608-79284627 MsG0480022970.01.T01:intron 30.0%
! ACCAATTTTCTACTACTAAC+TGG - Chr4:79283802-79283821 None:intergenic 30.0%
! ATCTTTTGTAGCTTTCCTAT+TGG + Chr4:79283508-79283527 MsG0480022970.01.T01:five_prime_UTR 30.0%
! ATTTTCTCAACTGGACATTT+TGG + Chr4:79283208-79283227 MsG0480022970.01.T01:five_prime_UTR 30.0%
!!! GGTTCTGTTGTTCTTATTTT+TGG + Chr4:79283418-79283437 MsG0480022970.01.T01:five_prime_UTR 30.0%
AATTTGAGAAGCAACAAGGT+TGG + Chr4:79284635-79284654 MsG0480022970.01.T01:CDS 35.0%
ACAAATTCATCGAGTCAGAT+AGG + Chr4:79285056-79285075 MsG0480022970.01.T01:CDS 35.0%
ACTAGTTCAGCTGAAAACTT+TGG - Chr4:79284864-79284883 None:intergenic 35.0%
AGCTGAACTAGTATACCTAA+TGG + Chr4:79284872-79284891 MsG0480022970.01.T01:intron 35.0%
ATACAAAGATGTGGCTGAAA+TGG + Chr4:79283898-79283917 MsG0480022970.01.T01:exon 35.0%
CAAATGCAACTCCAAATGAA+AGG + Chr4:79285275-79285294 MsG0480022970.01.T01:CDS 35.0%
CAACAGTACTGTCAGTATAT+TGG + Chr4:79283957-79283976 MsG0480022970.01.T01:CDS 35.0%
CTTCTCAAATCAAATCGGTT+AGG + Chr4:79285209-79285228 MsG0480022970.01.T01:CDS 35.0%
GAAAGGATTCAAGCAACTAA+TGG + Chr4:79285292-79285311 MsG0480022970.01.T01:CDS 35.0%
GAACAATTTGAGAAGCAACA+AGG + Chr4:79284631-79284650 MsG0480022970.01.T01:CDS 35.0%
GAGTCACATATACAAAGATG+TGG + Chr4:79283889-79283908 MsG0480022970.01.T01:exon 35.0%
GCATAATCGTTCTTATGAAC+TGG - Chr4:79284694-79284713 None:intergenic 35.0%
GTATCTTGTGCAAATATGAC+AGG - Chr4:79284760-79284779 None:intergenic 35.0%
GTTGCTTGAATCCTTTCATT+TGG - Chr4:79285289-79285308 None:intergenic 35.0%
TAAGAACGATTATGCTGTAG+AGG + Chr4:79284699-79284718 MsG0480022970.01.T01:CDS 35.0%
TCAGGCTTCTCAAATCAAAT+CGG + Chr4:79285204-79285223 MsG0480022970.01.T01:CDS 35.0%
! ATCAAAGATTGTTCTAGGCA+AGG + Chr4:79284287-79284306 MsG0480022970.01.T01:intron 35.0%
! ATTTGGAGTTGCATTTGATG+GGG - Chr4:79285272-79285291 None:intergenic 35.0%
! CATTTGGAGTTGCATTTGAT+GGG - Chr4:79285273-79285292 None:intergenic 35.0%
! CTTTTGTTGACATGGGTATT+GGG + Chr4:79284014-79284033 MsG0480022970.01.T01:CDS 35.0%
! GAGAAAGCTTTTGTTGACAT+GGG + Chr4:79284007-79284026 MsG0480022970.01.T01:CDS 35.0%
! TCATTTGGAGTTGCATTTGA+TGG - Chr4:79285274-79285293 None:intergenic 35.0%
! TGTTGATATGCTTTCTGGAA+AGG + Chr4:79284798-79284817 MsG0480022970.01.T01:CDS 35.0%
!! AAATGGTGGGAGAAGATTTT+AGG + Chr4:79283915-79283934 MsG0480022970.01.T01:CDS 35.0%
!! AATGGTGGGAGAAGATTTTA+GGG + Chr4:79283916-79283935 MsG0480022970.01.T01:CDS 35.0%
!! ATTTGATTTGAGAAGCCTGA+AGG - Chr4:79285204-79285223 None:intergenic 35.0%
!! TTTGATTTGAGAAGCCTGAA+GGG - Chr4:79285203-79285222 None:intergenic 35.0%
AAAGATGTGGCTGAAATGGT+GGG + Chr4:79283902-79283921 MsG0480022970.01.T01:exon 40.0%
AAGCTTGAGCAAAGAGTGAA+CGG - Chr4:79284977-79284996 None:intergenic 40.0%
AGCATATTCTTCCTGAAGAG+GGG - Chr4:79284737-79284756 None:intergenic 40.0%
CACTCTTTGCTCAAGCTTTA+GGG + Chr4:79284979-79284998 MsG0480022970.01.T01:intron 40.0%
CGATTATGCTGTAGAGGAAT+TGG + Chr4:79284705-79284724 MsG0480022970.01.T01:CDS 40.0%
GAGAATTTGCAAAGAGAGAG+AGG - Chr4:79283293-79283312 None:intergenic 40.0%
GAGCATATTCTTCCTGAAGA+GGG - Chr4:79284738-79284757 None:intergenic 40.0%
GGGAAGATATCTCTTGTAGA+CGG - Chr4:79285252-79285271 None:intergenic 40.0%
GTTTACAAGCTACTGAGAAG+AGG + Chr4:79284075-79284094 MsG0480022970.01.T01:CDS 40.0%
TCACTCTTTGCTCAAGCTTT+AGG + Chr4:79284978-79284997 MsG0480022970.01.T01:intron 40.0%
TCGAGTCAGATAGGACTATA+TGG + Chr4:79285065-79285084 MsG0480022970.01.T01:CDS 40.0%
TCTAGCATGAACTAACTGCA+GGG - Chr4:79283458-79283477 None:intergenic 40.0%
TCTGCAAGAGTCGAATTGAT+CGG - Chr4:79284330-79284349 None:intergenic 40.0%
TCTTACAACTCTGTCACACA+TGG + Chr4:79284372-79284391 MsG0480022970.01.T01:intron 40.0%
TCTTGTAGACGGCAAATGTA+AGG - Chr4:79285241-79285260 None:intergenic 40.0%
TGCTAGCATGTGTGATGAAA+GGG + Chr4:79284109-79284128 MsG0480022970.01.T01:CDS 40.0%
TGTCGTGTACGATGTCATAT+TGG + Chr4:79284446-79284465 MsG0480022970.01.T01:CDS 40.0%
TGTCTCTACAGTTGTACACA+AGG - Chr4:79285039-79285058 None:intergenic 40.0%
TTGCACGCAACACATTATCA+CGG - Chr4:79285151-79285170 None:intergenic 40.0%
TTGCTAGCATGTGTGATGAA+AGG + Chr4:79284108-79284127 MsG0480022970.01.T01:CDS 40.0%
! AACGGATTCAGATTATCACC+AGG - Chr4:79284959-79284978 None:intergenic 40.0%
! ACTCTTTGCTCAAGCTTTAG+GGG + Chr4:79284980-79284999 MsG0480022970.01.T01:intron 40.0%
! CAGAAAGAACAGCTTTTGAG+AGG + Chr4:79284559-79284578 MsG0480022970.01.T01:intron 40.0%
! GATATGCTTTCTGGAAAGGT+AGG + Chr4:79284802-79284821 MsG0480022970.01.T01:CDS 40.0%
! GCTTTTGTTGACATGGGTAT+TGG + Chr4:79284013-79284032 MsG0480022970.01.T01:CDS 40.0%
! GGAGAAAGCTTTTGTTGACA+TGG + Chr4:79284006-79284025 MsG0480022970.01.T01:CDS 40.0%
!! TGGGAGAAGATTTTAGGGAA+TGG + Chr4:79283921-79283940 MsG0480022970.01.T01:CDS 40.0%
AAGTACCTGATCAATGGCTG+AGG - Chr4:79284225-79284244 None:intergenic 45.0%
AGAGAGTGAAGAGAGAGTTG+TGG + Chr4:79283985-79284004 MsG0480022970.01.T01:CDS 45.0%
AGTACCTGATCAATGGCTGA+GGG - Chr4:79284224-79284243 None:intergenic 45.0%
CAAAGATGTGGCTGAAATGG+TGG + Chr4:79283901-79283920 MsG0480022970.01.T01:exon 45.0%
CAATTCGACTCTTGCAGATC+AGG + Chr4:79284332-79284351 MsG0480022970.01.T01:intron 45.0%
CTCTAGCATGAACTAACTGC+AGG - Chr4:79283459-79283478 None:intergenic 45.0%
CTGCAAGAGTCGAATTGATC+GGG - Chr4:79284329-79284348 None:intergenic 45.0%
GGAGCATATTCTTCCTGAAG+AGG - Chr4:79284739-79284758 None:intergenic 45.0%
GTGCAAGAGAATCAGGCAAA+GGG + Chr4:79285165-79285184 MsG0480022970.01.T01:CDS 45.0%
GTTGGACTGTAGTGTCTTTG+TGG + Chr4:79284036-79284055 MsG0480022970.01.T01:CDS 45.0%
TATTCTTCCTGAAGAGGGGA+TGG - Chr4:79284733-79284752 None:intergenic 45.0%
TGAAAGGGCTAGGATTGTTC+AGG + Chr4:79284124-79284143 MsG0480022970.01.T01:CDS 45.0%
TGCAAGAGAATCAGGCAAAG+GGG + Chr4:79285166-79285185 MsG0480022970.01.T01:CDS 45.0%
TTTGAGAGGCCTCTAACAAG+TGG + Chr4:79284573-79284592 MsG0480022970.01.T01:intron 45.0%
! TATGCCACACCACTTGTTAG+AGG - Chr4:79284585-79284604 None:intergenic 45.0%
!! CTCTTTGCTCAAGCTTTAGG+GGG + Chr4:79284981-79285000 MsG0480022970.01.T01:intron 45.0%
!! TGTTGACATGGGTATTGGGT+TGG + Chr4:79284018-79284037 MsG0480022970.01.T01:CDS 45.0%
ACGACACTGACACGTCAACA+CGG - Chr4:79284432-79284451 None:intergenic 50.0%
AGGTAGCAGCTACCAAAAGG+AGG - Chr4:79283536-79283555 None:intergenic 50.0%
CGTGCAAGAGAATCAGGCAA+AGG + Chr4:79285164-79285183 MsG0480022970.01.T01:CDS 50.0%
GCATGTGTGATGAAAGGGCT+AGG + Chr4:79284114-79284133 MsG0480022970.01.T01:CDS 50.0%
GGACAGAGTCACAGAGACAA+TGG + Chr4:79283229-79283248 MsG0480022970.01.T01:five_prime_UTR 50.0%
GGTAGCAGCTACCAAAAGGA+GGG - Chr4:79283535-79283554 None:intergenic 50.0%
GTAGCAGCTACCAAAAGGAG+GGG - Chr4:79283534-79283553 None:intergenic 50.0%
GTCAGGTAGCAGCTACCAAA+AGG - Chr4:79283539-79283558 None:intergenic 50.0%
GTGTTGCGTGCAAGAGAATC+AGG + Chr4:79285158-79285177 MsG0480022970.01.T01:CDS 50.0%
TACCAAAAGGAGGGGCCAAT+AGG - Chr4:79283526-79283545 None:intergenic 50.0%
TCAAACCTTGAACACTCGCG+TGG + Chr4:79283397-79283416 MsG0480022970.01.T01:five_prime_UTR 50.0%
TCTAGGCAAGGTTCGAAAGC+CGG + Chr4:79284299-79284318 MsG0480022970.01.T01:intron 50.0%
! GTCGAATTGATCGGGAGTAC+CGG - Chr4:79284321-79284340 None:intergenic 50.0%
! TTCCTATTGGCCCCTCCTTT+TGG + Chr4:79283521-79283540 MsG0480022970.01.T01:five_prime_UTR 50.0%
!!! GGGTTTTAACTGCACCCTTC+AGG + Chr4:79285186-79285205 MsG0480022970.01.T01:CDS 50.0%
ATTGGAGCCATCCCCTCTTC+AGG + Chr4:79284723-79284742 MsG0480022970.01.T01:CDS 55.0%
CAGAACCACGCGAGTGTTCA+AGG - Chr4:79283405-79283424 None:intergenic 55.0%
GAGGCCTCTAACAAGTGGTG+TGG + Chr4:79284578-79284597 MsG0480022970.01.T01:intron 55.0%
GAGTCCCTCAGCCATTGATC+AGG + Chr4:79284217-79284236 MsG0480022970.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr4 gene 79283173 79285331 79283173 ID=MsG0480022970.01;Name=MsG0480022970.01
Chr4 mRNA 79283173 79285331 79283173 ID=MsG0480022970.01.T01;Parent=MsG0480022970.01;Name=MsG0480022970.01.T01;_AED=0.49;_eAED=0.54;_QI=733|0|0.25|1|1|1|4|0|280
Chr4 exon 79283173 79284238 79283173 ID=MsG0480022970.01.T01:exon:11663;Parent=MsG0480022970.01.T01
Chr4 exon 79284446 79284474 79284446 ID=MsG0480022970.01.T01:exon:11664;Parent=MsG0480022970.01.T01
Chr4 exon 79284630 79284832 79284630 ID=MsG0480022970.01.T01:exon:11665;Parent=MsG0480022970.01.T01
Chr4 exon 79285054 79285331 79285054 ID=MsG0480022970.01.T01:exon:11666;Parent=MsG0480022970.01.T01
Chr4 five_prime_UTR 79283173 79283905 79283173 ID=MsG0480022970.01.T01:five_prime_utr;Parent=MsG0480022970.01.T01
Chr4 CDS 79283906 79284238 79283906 ID=MsG0480022970.01.T01:cds;Parent=MsG0480022970.01.T01
Chr4 CDS 79284446 79284474 79284446 ID=MsG0480022970.01.T01:cds;Parent=MsG0480022970.01.T01
Chr4 CDS 79284630 79284832 79284630 ID=MsG0480022970.01.T01:cds;Parent=MsG0480022970.01.T01
Chr4 CDS 79285054 79285331 79285054 ID=MsG0480022970.01.T01:cds;Parent=MsG0480022970.01.T01
Gene Sequence

>MsG0480022970.01.T01

ATGTGGCTGAAATGGTGGGAGAAGATTTTAGGGAATGGTTACAAAATCAATCAACAGTACTGTCAGTATATTGGGTCAAAGAGAGTGAAGAGAGAGTTGTGGAGAAAGCTTTTGTTGACATGGGTATTGGGTTGGACTGTAGTGTCTTTGTGGATCTTCTGCTTTATGAGTTTACAAGCTACTGAGAAGAGGAAAGAAACTCTTGCTAGCATGTGTGATGAAAGGGCTAGGATTGTTCAGGATCAGTTTAATGTTAGTATGAACCATATTCAAGCTATGTCTATTTTGATCTCAACTTTTCATCATGCTAAGAGTCCCTCAGCCATTGATCAGTGTCGTGTACGATGTCATATTGGTGCTACGGAACAATTTGAGAAGCAACAAGGTTGGATTATTAAGAGAATGGATACTCTAGAGCAGAATCCAGTTCATAAGAACGATTATGCTGTAGAGGAATTGGAGCCATCCCCTCTTCAGGAAGAATATGCTCCTGTCATATTTGCACAAGATACAATTTCACATGTCATTTCTGTTGATATGCTTTCTGGAAAGGTAGGTTTATGTCAGACAAATTCATCGAGTCAGATAGGACTATATGGACGACAAAACTCTCTTTTAAGAATTAGACATTTGTTATATTCACTTGTTCACAAGGAAGACCGTGATAATGTGTTGCGTGCAAGAGAATCAGGCAAAGGGGTTTTAACTGCACCCTTCAGGCTTCTCAAATCAAATCGGTTAGGAGTTATCCTTACATTTGCCGTCTACAAGAGATATCTTCCCCATCAAATGCAACTCCAAATGAAAGGATTCAAGCAACTAATGGGTATGCATATATTTTGA
Protein sequence

>MsG0480022970.01.T01

MWLKWWEKILGNGYKINQQYCQYIGSKRVKRELWRKLLLTWVLGWTVVSLWIFCFMSLQATEKRKETLASMCDERARIVQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQCRVRCHIGATEQFEKQQGWIIKRMDTLEQNPVHKNDYAVEELEPSPLQEEYAPVIFAQDTISHVISVDMLSGKVGLCQTNSSSQIGLYGRQNSLLRIRHLLYSLVHKEDRDNVLRARESGKGVLTAPFRLLKSNRLGVILTFAVYKRYLPHQMQLQMKGFKQLMGMHIF*