Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023132.01.T01 | XP_003629867.1 | 88.889 | 558 | 8 | 3 | 1 | 506 | 1 | 556 | 0 | 980 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023132.01.T01 | Q9ZP55 | 53.774 | 530 | 189 | 4 | 35 | 512 | 29 | 554 | 0 | 557 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023132.01.T01 | G7L7C0 | 88.889 | 558 | 8 | 3 | 1 | 506 | 1 | 556 | 0.0 | 980 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0380017369.01 | MsG0480023132.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023132.01.T01 | MTR_8g087750 | 88.889 | 558 | 8 | 3 | 1 | 506 | 1 | 556 | 0.0 | 980 |
| MsG0480023132.01.T01 | MTR_8g087770 | 73.810 | 546 | 85 | 6 | 11 | 501 | 6 | 548 | 0.0 | 789 |
| MsG0480023132.01.T01 | MTR_8g087763 | 61.798 | 178 | 40 | 2 | 350 | 501 | 4 | 179 | 3.89e-67 | 221 |
| MsG0480023132.01.T01 | MTR_4g093750 | 36.111 | 324 | 161 | 8 | 69 | 352 | 35 | 352 | 1.50e-39 | 153 |
| MsG0480023132.01.T01 | MTR_4g093750 | 38.144 | 291 | 134 | 8 | 69 | 319 | 35 | 319 | 2.06e-39 | 153 |
| MsG0480023132.01.T01 | MTR_2g009690 | 36.082 | 291 | 148 | 7 | 65 | 319 | 40 | 328 | 6.44e-36 | 143 |
| MsG0480023132.01.T01 | MTR_8g105580 | 33.333 | 294 | 147 | 9 | 71 | 323 | 35 | 320 | 5.19e-26 | 112 |
| MsG0480023132.01.T01 | MTR_8g105580 | 33.333 | 294 | 147 | 9 | 71 | 323 | 35 | 320 | 5.26e-26 | 112 |
| MsG0480023132.01.T01 | MTR_5g009150 | 32.765 | 293 | 151 | 8 | 71 | 323 | 35 | 321 | 2.71e-25 | 110 |
| MsG0480023132.01.T01 | MTR_1g032550 | 30.337 | 356 | 180 | 13 | 71 | 366 | 35 | 382 | 4.64e-25 | 109 |
| MsG0480023132.01.T01 | MTR_8g009510 | 32.595 | 316 | 163 | 10 | 71 | 345 | 40 | 346 | 5.27e-25 | 109 |
| MsG0480023132.01.T01 | MTR_7g451010 | 31.962 | 316 | 165 | 10 | 71 | 345 | 40 | 346 | 1.24e-24 | 108 |
| MsG0480023132.01.T01 | MTR_4g098920 | 30.447 | 358 | 177 | 13 | 71 | 366 | 34 | 381 | 1.02e-23 | 105 |
| MsG0480023132.01.T01 | MTR_8g027675 | 38.191 | 199 | 86 | 6 | 71 | 240 | 34 | 224 | 1.09e-23 | 105 |
| MsG0480023132.01.T01 | MTR_8g099550 | 30.547 | 311 | 176 | 8 | 71 | 345 | 34 | 340 | 5.93e-23 | 103 |
| MsG0480023132.01.T01 | MTR_4g085860 | 64.286 | 56 | 19 | 1 | 202 | 256 | 22 | 77 | 1.14e-15 | 72.4 |
| MsG0480023132.01.T01 | MTR_6g045107 | 62.500 | 56 | 20 | 1 | 202 | 256 | 22 | 77 | 8.93e-14 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023132.01.T01 | AT1G60500 | 53.774 | 530 | 189 | 4 | 35 | 512 | 29 | 554 | 0.0 | 557 |
| MsG0480023132.01.T01 | AT1G60530 | 62.847 | 288 | 75 | 2 | 22 | 283 | 19 | 300 | 3.16e-119 | 353 |
| MsG0480023132.01.T01 | AT4G33650 | 33.540 | 322 | 167 | 9 | 39 | 319 | 31 | 346 | 5.22e-35 | 140 |
| MsG0480023132.01.T01 | AT4G33650 | 33.540 | 322 | 167 | 9 | 39 | 319 | 31 | 346 | 5.77e-35 | 140 |
| MsG0480023132.01.T01 | AT2G14120 | 32.827 | 329 | 173 | 9 | 36 | 322 | 12 | 334 | 2.74e-34 | 138 |
| MsG0480023132.01.T01 | AT2G14120 | 32.827 | 329 | 173 | 9 | 36 | 322 | 12 | 334 | 3.40e-34 | 137 |
| MsG0480023132.01.T01 | AT2G14120 | 32.827 | 329 | 173 | 9 | 36 | 322 | 12 | 334 | 3.60e-34 | 137 |
| MsG0480023132.01.T01 | AT2G14120 | 32.827 | 329 | 173 | 9 | 36 | 322 | 12 | 334 | 4.45e-34 | 137 |
| MsG0480023132.01.T01 | AT2G44590 | 31.348 | 319 | 176 | 9 | 71 | 352 | 35 | 347 | 1.07e-27 | 117 |
| MsG0480023132.01.T01 | AT1G14830 | 31.833 | 311 | 172 | 8 | 71 | 345 | 35 | 341 | 1.58e-27 | 117 |
| MsG0480023132.01.T01 | AT3G60190 | 31.511 | 311 | 173 | 8 | 71 | 345 | 40 | 346 | 1.24e-25 | 111 |
| MsG0480023132.01.T01 | AT5G42080 | 31.833 | 311 | 172 | 8 | 71 | 345 | 34 | 340 | 6.21e-24 | 106 |
| MsG0480023132.01.T01 | AT5G42080 | 31.833 | 311 | 172 | 8 | 71 | 345 | 34 | 340 | 6.21e-24 | 106 |
| MsG0480023132.01.T01 | AT5G42080 | 31.833 | 311 | 172 | 8 | 71 | 345 | 34 | 340 | 6.65e-24 | 104 |
| MsG0480023132.01.T01 | AT5G42080 | 31.833 | 311 | 172 | 8 | 71 | 345 | 34 | 340 | 7.24e-24 | 105 |
| MsG0480023132.01.T01 | AT3G61760 | 31.646 | 316 | 166 | 10 | 71 | 345 | 34 | 340 | 3.31e-23 | 103 |
| MsG0480023132.01.T01 | AT3G61760 | 31.646 | 316 | 166 | 10 | 71 | 345 | 34 | 340 | 4.27e-23 | 103 |
| MsG0480023132.01.T01 | AT3G61760 | 31.646 | 316 | 166 | 10 | 71 | 345 | 34 | 340 | 5.25e-23 | 102 |
| MsG0480023132.01.T01 | AT2G44590 | 31.023 | 303 | 181 | 12 | 71 | 352 | 35 | 330 | 9.42e-20 | 93.2 |
| MsG0480023132.01.T01 | AT2G44590 | 31.023 | 303 | 181 | 12 | 71 | 352 | 35 | 330 | 9.79e-20 | 93.2 |
Find 81 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCTCACTCACTTCTTTCT+AGG | 0.252212 | 4:-81218487 | MsG0480023132.01.T01:CDS |
| ATTCTGAAGGCGCATAATTA+AGG | 0.255203 | 4:+81219046 | None:intergenic |
| TGGAAGCTGAATTCCTTCTT+TGG | 0.309988 | 4:+81219172 | None:intergenic |
| TTCAAATTATTATCAGCTTC+AGG | 0.310159 | 4:-81217917 | MsG0480023132.01.T01:CDS |
| TTAACTTTGTTGACAATGTT+TGG | 0.311210 | 4:-81217984 | MsG0480023132.01.T01:CDS |
| ATCTGATCATAGATATTATC+AGG | 0.311298 | 4:+81218798 | None:intergenic |
| AGTATTTGCTGGAGTATAAT+AGG | 0.311922 | 4:-81217774 | MsG0480023132.01.T01:CDS |
| TTCTCAAGGGCGTCGAGAAC+TGG | 0.318424 | 4:+81219215 | None:intergenic |
| CTTCCAACAATTGTTGTTGT+TGG | 0.331397 | 4:-81219155 | MsG0480023132.01.T01:CDS |
| GTTGTTGGAGATCAATCTTC+AGG | 0.340523 | 4:-81219140 | MsG0480023132.01.T01:CDS |
| TCACAAATGGTTGATAAAAC+TGG | 0.343252 | 4:-81218677 | MsG0480023132.01.T01:CDS |
| TTTAGCTCAGAAGCTTGTTC+AGG | 0.351831 | 4:-81218435 | MsG0480023132.01.T01:CDS |
| TTGAATTCTAACAAGAGTTC+TGG | 0.352154 | 4:+81219008 | None:intergenic |
| CTTACTATGGTTGATCTTCC+AGG | 0.352429 | 4:-81218849 | MsG0480023132.01.T01:CDS |
| TGGTGTTCCTGATCTTACTA+TGG | 0.383245 | 4:-81218862 | MsG0480023132.01.T01:CDS |
| TCAGATAAAAGATATTATTA+TGG | 0.384953 | 4:-81218781 | MsG0480023132.01.T01:CDS |
| TCCTAATCCTGAGTATTTGC+TGG | 0.402283 | 4:-81217785 | MsG0480023132.01.T01:CDS |
| ACCTTCTCCAACAATCCTTC+AGG | 0.403379 | 4:+81218614 | None:intergenic |
| CATAGGTCTCATCTCCAATT+CGG | 0.409654 | 4:+81218543 | None:intergenic |
| CAATGCATGTGCTTGTCCTC+AGG | 0.414801 | 4:+81218209 | None:intergenic |
| TCTCCAACAACAACAATTGT+TGG | 0.419207 | 4:+81219152 | None:intergenic |
| GTCTGTGTGCGAAACCGAAT+TGG | 0.426739 | 4:-81218557 | MsG0480023132.01.T01:CDS |
| TCGACGCCCTTGAGAATCTA+AGG | 0.430085 | 4:-81219208 | MsG0480023132.01.T01:CDS |
| TCCAGCAAATACTCAGGATT+AGG | 0.437255 | 4:+81217784 | None:intergenic |
| AGGATTGACAAATCCATTGT+TGG | 0.451509 | 4:-81218467 | MsG0480023132.01.T01:CDS |
| TAAATCTCCTGAAGGATTGT+TGG | 0.453191 | 4:-81218621 | MsG0480023132.01.T01:CDS |
| GACCTATGAAGATGCTAGAT+TGG | 0.455034 | 4:-81218528 | MsG0480023132.01.T01:CDS |
| ATCACCCGTGTACCTGTTCA+TGG | 0.456607 | 4:-81218825 | MsG0480023132.01.T01:CDS |
| GAACTCTTGTTAGAATTCAA+TGG | 0.458145 | 4:-81219005 | MsG0480023132.01.T01:CDS |
| ATTTGGTAGACCAATCCATT+TGG | 0.458705 | 4:+81218073 | None:intergenic |
| ACAAGCTTCTGAGCTAAAAC+AGG | 0.462376 | 4:+81218440 | None:intergenic |
| TATGGAAGAGATTAAGGTGT+TGG | 0.462977 | 4:-81218102 | MsG0480023132.01.T01:CDS |
| AGGAGTGTTGGAAATCCCTT+TGG | 0.463701 | 4:+81218908 | None:intergenic |
| TGATACCAGCTAAAGATTCA+AGG | 0.464998 | 4:+81219105 | None:intergenic |
| TTCTGAAGGCGCATAATTAA+GGG | 0.465234 | 4:+81219047 | None:intergenic |
| CAGGTTTCCACTCGCAGAGC+AGG | 0.466199 | 4:-81217898 | MsG0480023132.01.T01:CDS |
| AGTGTCCTTGAATCTTTAGC+TGG | 0.467085 | 4:-81219110 | MsG0480023132.01.T01:CDS |
| AAAGGAAGAGATTTGAGAGT+AGG | 0.476982 | 4:+81217678 | None:intergenic |
| AAGAGTTCTGGCTTTGAAAG+TGG | 0.480074 | 4:+81219020 | None:intergenic |
| CGTCTCAACATTGCCAAAGA+AGG | 0.485759 | 4:-81219185 | MsG0480023132.01.T01:CDS |
| ATAGCTACTGAAGAGATTGC+TGG | 0.488901 | 4:-81218936 | MsG0480023132.01.T01:CDS |
| TCATTGTAGGATGAAACAAT+TGG | 0.490493 | 4:+81219248 | None:intergenic |
| GATGATGTTAACATCGGTCT+AGG | 0.491228 | 4:-81218584 | MsG0480023132.01.T01:CDS |
| AAAGTGATGTTTCATCTCGT+TGG | 0.495363 | 4:+81219315 | None:intergenic |
| AGGTGTTGGAAGAGGCCAAA+TGG | 0.496352 | 4:-81218088 | MsG0480023132.01.T01:CDS |
| ACAGGTACACGGGTGATACC+TGG | 0.496559 | 4:+81218831 | None:intergenic |
| GCAACAGAAGATAAATTAGC+AGG | 0.505796 | 4:+81218320 | None:intergenic |
| TTATCAGGTTGACCATGAAC+AGG | 0.506484 | 4:+81218813 | None:intergenic |
| AATCAAAGTCAAAGGAGTGT+TGG | 0.514073 | 4:+81218896 | None:intergenic |
| GTCTATTAGGATGTCACAAA+TGG | 0.520689 | 4:-81218690 | MsG0480023132.01.T01:intron |
| TTCCAATCTAGCATCTTCAT+AGG | 0.522397 | 4:+81218526 | None:intergenic |
| AGATCAACCATAGTAAGATC+AGG | 0.522883 | 4:+81218855 | None:intergenic |
| TTGGAAGAGGCCAAATGGAT+TGG | 0.525795 | 4:-81218083 | MsG0480023132.01.T01:intron |
| AGAGATTAAGGTGTTGGAAG+AGG | 0.526369 | 4:-81218096 | MsG0480023132.01.T01:CDS |
| ATCAGCTTGCCGCGTGGACA+AGG | 0.526537 | 4:-81219086 | MsG0480023132.01.T01:CDS |
| GAGATTGCTGGTTCTGCCAA+AGG | 0.527844 | 4:-81218924 | MsG0480023132.01.T01:CDS |
| AAGTTCAGTCCAACATGTGA+TGG | 0.546492 | 4:-81217848 | MsG0480023132.01.T01:CDS |
| AATGCATGTGCTTGTCCTCA+GGG | 0.547239 | 4:+81218210 | None:intergenic |
| AGATTGCTGGTTCTGCCAAA+GGG | 0.550639 | 4:-81218923 | MsG0480023132.01.T01:CDS |
| GAGGTTGAGCTTGCTCAACA+TGG | 0.552600 | 4:+81219285 | None:intergenic |
| TGGTTGATAAAACTGGTTTG+AGG | 0.562514 | 4:-81218670 | MsG0480023132.01.T01:CDS |
| ATTGGTGCAACAACAGAAAG+AGG | 0.569115 | 4:+81219266 | None:intergenic |
| TCCTGAAGGATTGTTGGAGA+AGG | 0.571650 | 4:-81218615 | MsG0480023132.01.T01:CDS |
| AGCTAAAGATTCAAGGACAC+TGG | 0.572468 | 4:+81219112 | None:intergenic |
| TTTCTCACCTGCTCTGCGAG+TGG | 0.583153 | 4:+81217891 | None:intergenic |
| CGACAGCTTCCATCACATGT+TGG | 0.583593 | 4:+81217839 | None:intergenic |
| TTATACTCCAGCAAATACTC+AGG | 0.594404 | 4:+81217778 | None:intergenic |
| TTGAAAGTGGATGATTCTGA+AGG | 0.605131 | 4:+81219033 | None:intergenic |
| GTTGACCATGAACAGGTACA+CGG | 0.609991 | 4:+81218820 | None:intergenic |
| TGAGACGCCTTAGATTCTCA+AGG | 0.620323 | 4:+81219201 | None:intergenic |
| AAAGCAGATAAATCTCCTGA+AGG | 0.623780 | 4:-81218629 | MsG0480023132.01.T01:CDS |
| GAGACGCCTTAGATTCTCAA+GGG | 0.625868 | 4:+81219202 | None:intergenic |
| TGTGATGGAAGCTGTCGAGA+TGG | 0.629556 | 4:-81217833 | MsG0480023132.01.T01:CDS |
| TAAAACAGGAATACCAACAA+TGG | 0.629558 | 4:+81218454 | None:intergenic |
| TTGACCATGAACAGGTACAC+GGG | 0.647300 | 4:+81218821 | None:intergenic |
| GCTGGTATCAGCTTGCCGCG+TGG | 0.673075 | 4:-81219092 | MsG0480023132.01.T01:CDS |
| ACTGCTGATGATGTTAACAT+CGG | 0.682747 | 4:-81218590 | MsG0480023132.01.T01:CDS |
| GTGGACAAGGAATCTGCACG+AGG | 0.693122 | 4:-81219073 | MsG0480023132.01.T01:CDS |
| GTGCAGATTCCTTGTCCACG+CGG | 0.707996 | 4:+81219077 | None:intergenic |
| TGGACAAGGAATCTGCACGA+GGG | 0.739588 | 4:-81219072 | MsG0480023132.01.T01:CDS |
| TGATTTCGAAGAGTACCCTG+AGG | 0.804578 | 4:-81218225 | MsG0480023132.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATTTTAAAAGCAATAA+AGG | + | Chr4:81219353-81219372 | None:intergenic | 10.0% |
| !! | TCAGATAAAAGATATTATTA+TGG | - | Chr4:81218229-81218248 | MsG0480023132.01.T01:CDS | 15.0% |
| !!! | TTAATTTTTTTGATGATCTC+CGG | + | Chr4:81218630-81218649 | None:intergenic | 20.0% |
| ! | ACTTTGATTGTCAAAAAGAA+TGG | - | Chr4:81218128-81218147 | MsG0480023132.01.T01:CDS | 25.0% |
| ! | ATCTGATCATAGATATTATC+AGG | + | Chr4:81218215-81218234 | None:intergenic | 25.0% |
| ! | TTAACTTTGTTGACAATGTT+TGG | - | Chr4:81219026-81219045 | MsG0480023132.01.T01:CDS | 25.0% |
| ! | TTCAAATTATTATCAGCTTC+AGG | - | Chr4:81219093-81219112 | MsG0480023132.01.T01:CDS | 25.0% |
| ! | TTCAAGATAATACTTTCTTC+AGG | + | Chr4:81218266-81218285 | None:intergenic | 25.0% |
| !! | TGCGAAAAAGAATTTTCTTA+TGG | - | Chr4:81218890-81218909 | MsG0480023132.01.T01:CDS | 25.0% |
| !! | TTTTCTTATGGAAGAGATTA+AGG | - | Chr4:81218902-81218921 | MsG0480023132.01.T01:CDS | 25.0% |
| !! | TTTTTGACAATCAAAGTCAA+AGG | + | Chr4:81218125-81218144 | None:intergenic | 25.0% |
| !!! | TTTATCTGCTTTTGTAACAA+CGG | + | Chr4:81218373-81218392 | None:intergenic | 25.0% |
| !!! | TTTTAACTTGTGAGTCTATT+AGG | - | Chr4:81218307-81218326 | MsG0480023132.01.T01:CDS | 25.0% |
| AATACTGCAGAGAAAAGTTA+AGG | - | Chr4:81218985-81219004 | MsG0480023132.01.T01:CDS | 30.0% | |
| ACATTGTCAACAAAGTTAAC+TGG | + | Chr4:81219025-81219044 | None:intergenic | 30.0% | |
| ATACTGCAGAGAAAAGTTAA+GGG | - | Chr4:81218986-81219005 | MsG0480023132.01.T01:CDS | 30.0% | |
| CTCAAAAAGATTCTTCTTAC+AGG | - | Chr4:81218762-81218781 | MsG0480023132.01.T01:intron | 30.0% | |
| GAACTCTTGTTAGAATTCAA+TGG | - | Chr4:81218005-81218024 | MsG0480023132.01.T01:intron | 30.0% | |
| GATTATCTCAAAAACTTTGC+CGG | - | Chr4:81218608-81218627 | MsG0480023132.01.T01:CDS | 30.0% | |
| TAAAACAGGAATACCAACAA+TGG | + | Chr4:81218559-81218578 | None:intergenic | 30.0% | |
| TAAAATCAACAGTAGCAGAA+AGG | + | Chr4:81218292-81218311 | None:intergenic | 30.0% | |
| TATTGTCAAAATGCAGTTCT+TGG | + | Chr4:81218969-81218988 | None:intergenic | 30.0% | |
| TCATTGTAGGATGAAACAAT+TGG | + | Chr4:81217765-81217784 | None:intergenic | 30.0% | |
| TTGAATTCTAACAAGAGTTC+TGG | + | Chr4:81218005-81218024 | None:intergenic | 30.0% | |
| ! | ACAGCTTTTATGCATATTCT+TGG | - | Chr4:81218723-81218742 | MsG0480023132.01.T01:intron | 30.0% |
| ! | AGTATTTGCTGGAGTATAAT+AGG | - | Chr4:81219236-81219255 | MsG0480023132.01.T01:CDS | 30.0% |
| !! | TCACAAATGGTTGATAAAAC+TGG | - | Chr4:81218333-81218352 | MsG0480023132.01.T01:CDS | 30.0% |
| !!! | TGGACGTATTTTTTCATTGT+AGG | + | Chr4:81217778-81217797 | None:intergenic | 30.0% |
| AAAGCAGATAAATCTCCTGA+AGG | - | Chr4:81218381-81218400 | MsG0480023132.01.T01:CDS | 35.0% | |
| AAAGGAAGAGATTTGAGAGT+AGG | + | Chr4:81219335-81219354 | None:intergenic | 35.0% | |
| AAAGTGATGTTTCATCTCGT+TGG | + | Chr4:81217698-81217717 | None:intergenic | 35.0% | |
| AGATCAACCATAGTAAGATC+AGG | + | Chr4:81218158-81218177 | None:intergenic | 35.0% | |
| AGGATTGACAAATCCATTGT+TGG | - | Chr4:81218543-81218562 | MsG0480023132.01.T01:CDS | 35.0% | |
| ATTTGGTAGACCAATCCATT+TGG | + | Chr4:81218940-81218959 | None:intergenic | 35.0% | |
| GCAACAGAAGATAAATTAGC+AGG | + | Chr4:81218693-81218712 | None:intergenic | 35.0% | |
| GTCTATTAGGATGTCACAAA+TGG | - | Chr4:81218320-81218339 | MsG0480023132.01.T01:CDS | 35.0% | |
| TAAATCTCCTGAAGGATTGT+TGG | - | Chr4:81218389-81218408 | MsG0480023132.01.T01:CDS | 35.0% | |
| TATGGAAGAGATTAAGGTGT+TGG | - | Chr4:81218908-81218927 | MsG0480023132.01.T01:CDS | 35.0% | |
| TCTCCAACAACAACAATTGT+TGG | + | Chr4:81217861-81217880 | None:intergenic | 35.0% | |
| TGATACCAGCTAAAGATTCA+AGG | + | Chr4:81217908-81217927 | None:intergenic | 35.0% | |
| TTATACTCCAGCAAATACTC+AGG | + | Chr4:81219235-81219254 | None:intergenic | 35.0% | |
| TTCCAATCTAGCATCTTCAT+AGG | + | Chr4:81218487-81218506 | None:intergenic | 35.0% | |
| TTGAAAGTGGATGATTCTGA+AGG | + | Chr4:81217980-81217999 | None:intergenic | 35.0% | |
| ! | AATCAAAGTCAAAGGAGTGT+TGG | + | Chr4:81218117-81218136 | None:intergenic | 35.0% |
| ! | ACTAACAGAAGCTTTTGTAG+TGG | + | Chr4:81217670-81217689 | None:intergenic | 35.0% |
| ! | ACTGCTGATGATGTTAACAT+CGG | - | Chr4:81218420-81218439 | MsG0480023132.01.T01:CDS | 35.0% |
| ! | ATTCTGAAGGCGCATAATTA+AGG | + | Chr4:81217967-81217986 | None:intergenic | 35.0% |
| ! | CTTCCAACAATTGTTGTTGT+TGG | - | Chr4:81217855-81217874 | MsG0480023132.01.T01:CDS | 35.0% |
| ! | TTCTGAAGGCGCATAATTAA+GGG | + | Chr4:81217966-81217985 | None:intergenic | 35.0% |
| !! | TGGTTGATAAAACTGGTTTG+AGG | - | Chr4:81218340-81218359 | MsG0480023132.01.T01:CDS | 35.0% |
| AAGTTCAGTCCAACATGTGA+TGG | - | Chr4:81219162-81219181 | MsG0480023132.01.T01:CDS | 40.0% | |
| ACAAGCTTCTGAGCTAAAAC+AGG | + | Chr4:81218573-81218592 | None:intergenic | 40.0% | |
| AGCTAAAGATTCAAGGACAC+TGG | + | Chr4:81217901-81217920 | None:intergenic | 40.0% | |
| AGTCTCACTCACTTCTTTCT+AGG | - | Chr4:81218523-81218542 | MsG0480023132.01.T01:CDS | 40.0% | |
| AGTGTCCTTGAATCTTTAGC+TGG | - | Chr4:81217900-81217919 | MsG0480023132.01.T01:CDS | 40.0% | |
| ATAGCTACTGAAGAGATTGC+TGG | - | Chr4:81218074-81218093 | MsG0480023132.01.T01:intron | 40.0% | |
| ATTGGTGCAACAACAGAAAG+AGG | + | Chr4:81217747-81217766 | None:intergenic | 40.0% | |
| CATAGGTCTCATCTCCAATT+CGG | + | Chr4:81218470-81218489 | None:intergenic | 40.0% | |
| CTTACTATGGTTGATCTTCC+AGG | - | Chr4:81218161-81218180 | MsG0480023132.01.T01:CDS | 40.0% | |
| GACCTATGAAGATGCTAGAT+TGG | - | Chr4:81218482-81218501 | MsG0480023132.01.T01:CDS | 40.0% | |
| GATGATGTTAACATCGGTCT+AGG | - | Chr4:81218426-81218445 | MsG0480023132.01.T01:CDS | 40.0% | |
| GCAGTTCTTGGCATGAAATT+TGG | + | Chr4:81218957-81218976 | None:intergenic | 40.0% | |
| GTTGTTGGAGATCAATCTTC+AGG | - | Chr4:81217870-81217889 | MsG0480023132.01.T01:CDS | 40.0% | |
| TCCAGCAAATACTCAGGATT+AGG | + | Chr4:81219229-81219248 | None:intergenic | 40.0% | |
| TCCTAATCCTGAGTATTTGC+TGG | - | Chr4:81219225-81219244 | MsG0480023132.01.T01:CDS | 40.0% | |
| TGGAAGCTGAATTCCTTCTT+TGG | + | Chr4:81217841-81217860 | None:intergenic | 40.0% | |
| TGGTGTTCCTGATCTTACTA+TGG | - | Chr4:81218148-81218167 | MsG0480023132.01.T01:CDS | 40.0% | |
| ! | TTTAGCTCAGAAGCTTGTTC+AGG | - | Chr4:81218575-81218594 | MsG0480023132.01.T01:CDS | 40.0% |
| !! | AAGAGTTCTGGCTTTGAAAG+TGG | + | Chr4:81217993-81218012 | None:intergenic | 40.0% |
| !! | AGAGATTAAGGTGTTGGAAG+AGG | - | Chr4:81218914-81218933 | MsG0480023132.01.T01:CDS | 40.0% |
| !! | GTTTTGCAGGGTTTGTTTCA+GGG | + | Chr4:81219303-81219322 | None:intergenic | 40.0% |
| !! | TGTTTTGCAGGGTTTGTTTC+AGG | + | Chr4:81219304-81219323 | None:intergenic | 40.0% |
| !! | TTATCAGGTTGACCATGAAC+AGG | + | Chr4:81218200-81218219 | None:intergenic | 40.0% |
| AATGCATGTGCTTGTCCTCA+GGG | + | Chr4:81218803-81218822 | None:intergenic | 45.0% | |
| ACCTTCTCCAACAATCCTTC+AGG | + | Chr4:81218399-81218418 | None:intergenic | 45.0% | |
| CGTCTCAACATTGCCAAAGA+AGG | - | Chr4:81217825-81217844 | MsG0480023132.01.T01:CDS | 45.0% | |
| GAGACGCCTTAGATTCTCAA+GGG | + | Chr4:81217811-81217830 | None:intergenic | 45.0% | |
| GTTGACCATGAACAGGTACA+CGG | + | Chr4:81218193-81218212 | None:intergenic | 45.0% | |
| TCCTGAAGGATTGTTGGAGA+AGG | - | Chr4:81218395-81218414 | MsG0480023132.01.T01:CDS | 45.0% | |
| TGAGACGCCTTAGATTCTCA+AGG | + | Chr4:81217812-81217831 | None:intergenic | 45.0% | |
| TTGACCATGAACAGGTACAC+GGG | + | Chr4:81218192-81218211 | None:intergenic | 45.0% | |
| TTGGAAGAGGCCAAATGGAT+TGG | - | Chr4:81218927-81218946 | MsG0480023132.01.T01:CDS | 45.0% | |
| !! | AGATTGCTGGTTCTGCCAAA+GGG | - | Chr4:81218087-81218106 | MsG0480023132.01.T01:CDS | 45.0% |
| !! | AGGAGTGTTGGAAATCCCTT+TGG | + | Chr4:81218105-81218124 | None:intergenic | 45.0% |
| !! | AGGTTGCAGAGTGTTTTGCA+GGG | + | Chr4:81219315-81219334 | None:intergenic | 45.0% |
| !! | TAGGTTGCAGAGTGTTTTGC+AGG | + | Chr4:81219316-81219335 | None:intergenic | 45.0% |
| !! | TGATTTCGAAGAGTACCCTG+AGG | - | Chr4:81218785-81218804 | MsG0480023132.01.T01:CDS | 45.0% |
| ATCACCCGTGTACCTGTTCA+TGG | - | Chr4:81218185-81218204 | MsG0480023132.01.T01:CDS | 50.0% | |
| CAATGCATGTGCTTGTCCTC+AGG | + | Chr4:81218804-81218823 | None:intergenic | 50.0% | |
| CGACAGCTTCCATCACATGT+TGG | + | Chr4:81219174-81219193 | None:intergenic | 50.0% | |
| GTCTGTGTGCGAAACCGAAT+TGG | - | Chr4:81218453-81218472 | MsG0480023132.01.T01:CDS | 50.0% | |
| TCGACGCCCTTGAGAATCTA+AGG | - | Chr4:81217802-81217821 | MsG0480023132.01.T01:CDS | 50.0% | |
| TGGACAAGGAATCTGCACGA+GGG | - | Chr4:81217938-81217957 | MsG0480023132.01.T01:CDS | 50.0% | |
| ! | GAGGTTGAGCTTGCTCAACA+TGG | + | Chr4:81217728-81217747 | None:intergenic | 50.0% |
| ! | TGTGATGGAAGCTGTCGAGA+TGG | - | Chr4:81219177-81219196 | MsG0480023132.01.T01:CDS | 50.0% |
| !! | AGGTGTTGGAAGAGGCCAAA+TGG | - | Chr4:81218922-81218941 | MsG0480023132.01.T01:CDS | 50.0% |
| !! | GAGATTGCTGGTTCTGCCAA+AGG | - | Chr4:81218086-81218105 | MsG0480023132.01.T01:CDS | 50.0% |
| ACAGGTACACGGGTGATACC+TGG | + | Chr4:81218182-81218201 | None:intergenic | 55.0% | |
| GTGCAGATTCCTTGTCCACG+CGG | + | Chr4:81217936-81217955 | None:intergenic | 55.0% | |
| GTGGACAAGGAATCTGCACG+AGG | - | Chr4:81217937-81217956 | MsG0480023132.01.T01:CDS | 55.0% | |
| TTTCTCACCTGCTCTGCGAG+TGG | + | Chr4:81219122-81219141 | None:intergenic | 55.0% | |
| !! | TTCTCAAGGGCGTCGAGAAC+TGG | + | Chr4:81217798-81217817 | None:intergenic | 55.0% |
| ATCAGCTTGCCGCGTGGACA+AGG | - | Chr4:81217924-81217943 | MsG0480023132.01.T01:CDS | 60.0% | |
| CAGGTTTCCACTCGCAGAGC+AGG | - | Chr4:81219112-81219131 | MsG0480023132.01.T01:CDS | 60.0% | |
| GCTGGTATCAGCTTGCCGCG+TGG | - | Chr4:81217918-81217937 | MsG0480023132.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 81217645 | 81219387 | 81217645 | ID=MsG0480023132.01;Name=MsG0480023132.01 |
| Chr4 | mRNA | 81217645 | 81219387 | 81217645 | ID=MsG0480023132.01.T01;Parent=MsG0480023132.01;Name=MsG0480023132.01.T01;_AED=0.48;_eAED=0.49;_QI=0|0|0|1|1|1|3|0|529 |
| Chr4 | exon | 81218780 | 81219387 | 81218780 | ID=MsG0480023132.01.T01:exon:684;Parent=MsG0480023132.01.T01 |
| Chr4 | exon | 81218084 | 81218703 | 81218084 | ID=MsG0480023132.01.T01:exon:683;Parent=MsG0480023132.01.T01 |
| Chr4 | exon | 81217645 | 81218006 | 81217645 | ID=MsG0480023132.01.T01:exon:682;Parent=MsG0480023132.01.T01 |
| Chr4 | CDS | 81218780 | 81219387 | 81218780 | ID=MsG0480023132.01.T01:cds;Parent=MsG0480023132.01.T01 |
| Chr4 | CDS | 81218084 | 81218703 | 81218084 | ID=MsG0480023132.01.T01:cds;Parent=MsG0480023132.01.T01 |
| Chr4 | CDS | 81217645 | 81218006 | 81217645 | ID=MsG0480023132.01.T01:cds;Parent=MsG0480023132.01.T01 |
| Gene Sequence |
| Protein sequence |
