AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023714.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023714.01.T01 MTR_8g099700 83.618 293 18 2 13 301 5 271 3.10e-175 487
MsG0480023714.01.T01 MTR_8g099695 81.852 270 47 1 32 301 24 291 1.29e-159 455
MsG0480023714.01.T01 MTR_1g103020 65.328 274 93 1 30 301 8 281 5.67e-129 377
MsG0480023714.01.T01 MTR_4g096690 70.683 249 72 1 54 301 31 279 5.44e-126 369
MsG0480023714.01.T01 MTR_8g099715 68.675 249 32 2 53 301 6 208 5.89e-113 333
MsG0480023714.01.T01 MTR_2g043530 51.931 233 111 1 69 301 66 297 1.08e-79 250
MsG0480023714.01.T01 MTR_4g124880 51.429 245 116 2 59 301 57 300 2.04e-79 250
MsG0480023714.01.T01 MTR_2g043530 51.931 233 111 1 69 301 66 297 3.83e-79 249
MsG0480023714.01.T01 MTR_4g124880 57.419 155 65 1 147 301 1 154 6.56e-61 198
MsG0480023714.01.T01 MTR_1g069385 32.922 243 140 4 80 301 37 277 7.75e-37 138
MsG0480023714.01.T01 MTR_1g069385 39.216 153 90 2 150 301 4 154 1.37e-27 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023714.01.T01 AT5G46290 66.914 269 89 0 33 301 14 282 1.37e-132 386
MsG0480023714.01.T01 AT5G46290 66.914 269 89 0 33 301 14 282 1.60e-132 386
MsG0480023714.01.T01 AT1G74960 50.862 232 113 1 70 301 120 350 4.32e-83 261
MsG0480023714.01.T01 AT1G74960 50.862 232 113 1 70 301 120 350 4.32e-83 261
MsG0480023714.01.T01 AT1G74960 50.862 232 113 1 70 301 120 350 4.32e-83 261
MsG0480023714.01.T01 AT5G46290 49.814 269 80 2 33 301 14 227 4.09e-82 255
MsG0480023714.01.T01 AT2G04540 36.777 242 131 7 79 301 30 268 1.84e-29 117

Find 80 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAAGGCATTTGCATTCTT+TGG 0.087646 4:-88878379 None:intergenic
TCCCTACAGCATTTCTAATA+TGG 0.153775 4:+88879462 MsG0480023714.01.T01:CDS
TAATATGGGTTCTGCTTTAT+TGG 0.183843 4:+88879477 MsG0480023714.01.T01:CDS
AGAGAACAATGGGATATTTA+AGG 0.195028 4:+88878343 MsG0480023714.01.T01:CDS
AGGTATCAAACCTATCTATT+AGG 0.202570 4:-88878616 None:intergenic
ATGGGTCTTGTGTCAGTATT+TGG 0.212889 4:+88878539 MsG0480023714.01.T01:CDS
TTAATTCTAGTGAAGAAAAT+TGG 0.229437 4:+88879740 MsG0480023714.01.T01:CDS
TTGGAGGATTCATTGCTTGC+AGG 0.270366 4:+88879656 MsG0480023714.01.T01:CDS
TTGAAATATTGTTTAGTTGC+AGG 0.281502 4:+88878731 MsG0480023714.01.T01:CDS
TGAAGGCATTTGCATTCTTT+GGG 0.281887 4:-88878378 None:intergenic
TCAAGCTTCCCTGTCCGTTT+TGG 0.312091 4:+88878638 MsG0480023714.01.T01:CDS
CTGCTTCTAATCACATTAGA+AGG 0.322240 4:+88879575 MsG0480023714.01.T01:CDS
AAGGGGTGAAGTAGATATTA+TGG 0.327341 4:+88879594 MsG0480023714.01.T01:CDS
GCTTTATTGGCTATAGAAAC+TGG 0.329983 4:+88879490 MsG0480023714.01.T01:CDS
GGTATCAAACCTATCTATTA+GGG 0.331990 4:-88878615 None:intergenic
CCCTACAGCATTTCTAATAT+GGG 0.333265 4:+88879463 MsG0480023714.01.T01:CDS
GGCTATAGAAACTGGCCTAA+TGG 0.341363 4:+88879498 MsG0480023714.01.T01:CDS
TCCAACTAGAACTCCTATTC+TGG 0.343870 4:-88879353 None:intergenic
CGAAGCTTCAATTATACCTA+TGG 0.346655 4:+88879630 MsG0480023714.01.T01:CDS
GCAGTAGAAATGGAATAATT+TGG 0.351291 4:-88879523 None:intergenic
TCTTCAAAAGGTTACATTGA+TGG 0.355619 4:+88878680 MsG0480023714.01.T01:CDS
GCTATAGAAACTGGCCTAAT+GGG 0.366775 4:+88879499 MsG0480023714.01.T01:CDS
ACTTCTGACTTACATTGTTA+AGG 0.368180 4:-88878793 None:intergenic
TGGAATAATTTGGTCCCATT+AGG 0.388383 4:-88879513 None:intergenic
GTGGAATAACCCTAATAGAT+AGG 0.417169 4:+88878606 MsG0480023714.01.T01:CDS
CAGATGGACAAAACCAGAAT+AGG 0.421656 4:+88879340 MsG0480023714.01.T01:intron
GCCCTTGAAGATGCTAATCT+TGG 0.430300 4:+88878761 MsG0480023714.01.T01:CDS
ACTGCTGGTATATGTCCATT+AGG 0.436647 4:+88878296 MsG0480023714.01.T01:CDS
TGTTTCTGCTTACATCGAAA+AGG 0.445734 4:+88879411 MsG0480023714.01.T01:CDS
TTCCAAGATTAGCATCTTCA+AGG 0.450319 4:-88878763 None:intergenic
CATAGGTATAATTGAAGCTT+CGG 0.451709 4:-88879629 None:intergenic
TCTGTGAGCAATGCTCCTAA+TGG 0.453396 4:-88878311 None:intergenic
CTTGCAGGGCTTTGTCTCAA+AGG 0.454023 4:+88879671 MsG0480023714.01.T01:CDS
ACAAAATCTCAGAGAACAAT+GGG 0.464965 4:+88878333 MsG0480023714.01.T01:CDS
GTTCTAGTTGGATCAGGAAT+AGG 0.473424 4:+88879364 MsG0480023714.01.T01:CDS
GAGAGTAGTAATAACAGGAA+TGG 0.481577 4:+88878520 MsG0480023714.01.T01:CDS
ATTATACCTATGGGTGTTGG+AGG 0.485975 4:+88879640 MsG0480023714.01.T01:CDS
AGAGTAGTAATAACAGGAAT+GGG 0.489390 4:+88878521 MsG0480023714.01.T01:CDS
TGGAGGATTCATTGCTTGCA+GGG 0.494570 4:+88879657 MsG0480023714.01.T01:CDS
ATAGGAGTTCTAGTTGGATC+AGG 0.497946 4:+88879358 MsG0480023714.01.T01:CDS
GTTTCTGCTTACATCGAAAA+GGG 0.506754 4:+88879412 MsG0480023714.01.T01:CDS
ATGACATTCATTAGAACTGC+TGG 0.507733 4:+88878281 MsG0480023714.01.T01:CDS
CGCGTATCTGACCACCAAAA+CGG 0.508528 4:-88878652 None:intergenic
AGAAACAGCATCGCTAATAG+TGG 0.508658 4:-88879395 None:intergenic
CAGGAAATGCAAAACAATCA+AGG 0.509932 4:+88878445 MsG0480023714.01.T01:CDS
TGTTGCACAAGCAGTAGAAA+TGG 0.509995 4:-88879533 None:intergenic
TCAATTATACCTATGGGTGT+TGG 0.512174 4:+88879637 MsG0480023714.01.T01:CDS
ATACGCGATCTCTCTTCAAA+AGG 0.517244 4:+88878668 MsG0480023714.01.T01:CDS
ATCTGACCACCAAAACGGAC+AGG 0.522216 4:-88878647 None:intergenic
GAAGTAGATATTATGGTGGT+TGG 0.525525 4:+88879601 MsG0480023714.01.T01:CDS
AAGCTTCTAGAGGGAGAAAG+TGG 0.525564 4:+88878587 MsG0480023714.01.T01:CDS
ACCAGAATAGGAGTTCTAGT+TGG 0.548909 4:+88879352 MsG0480023714.01.T01:CDS
CTTACATCGAAAAGGGACAT+AGG 0.549703 4:+88879419 MsG0480023714.01.T01:CDS
TCCCCACTTGTATTGCAGCC+AGG 0.554301 4:+88878426 MsG0480023714.01.T01:CDS
GAAGCTTCAATTATACCTAT+GGG 0.557704 4:+88879631 MsG0480023714.01.T01:CDS
GACAAAATCTCAGAGAACAA+TGG 0.557749 4:+88878332 MsG0480023714.01.T01:CDS
CTAGTTGGATCAGGAATAGG+TGG 0.561069 4:+88879367 MsG0480023714.01.T01:CDS
TCCAAGATTAGCATCTTCAA+GGG 0.563545 4:-88878762 None:intergenic
TGCAACAGTTGGAGAAGCCA+TGG 0.566301 4:-88878468 None:intergenic
ATGCAAAACAATCAAGGCCA+TGG 0.566553 4:+88878451 MsG0480023714.01.T01:CDS
TGCTTCTAATCACATTAGAA+GGG 0.568712 4:+88879576 MsG0480023714.01.T01:CDS
ATTGTTTAGTTGCAGGCAAG+AGG 0.569705 4:+88878738 MsG0480023714.01.T01:CDS
ACATTGATGGCAAGAATGAT+CGG 0.571088 4:+88878693 MsG0480023714.01.T01:CDS
TTCCTGGCTGCAATACAAGT+GGG 0.577245 4:-88878428 None:intergenic
GAAGGCATTTGCATTCTTTG+GGG 0.577286 4:-88878377 None:intergenic
ATGAATCCTCCAACACCCAT+AGG 0.578702 4:-88879646 None:intergenic
CCCATATTAGAAATGCTGTA+GGG 0.587419 4:-88879463 None:intergenic
GTAGATATTATGGTGGTTGG+TGG 0.588023 4:+88879604 MsG0480023714.01.T01:CDS
TTGTTTAGTTGCAGGCAAGA+GGG 0.606368 4:+88878739 MsG0480023714.01.T01:CDS
TTTCCTGGCTGCAATACAAG+TGG 0.609351 4:-88878429 None:intergenic
ACCCATATTAGAAATGCTGT+AGG 0.616046 4:-88879464 None:intergenic
GGGTGAAGTAGATATTATGG+TGG 0.632800 4:+88879597 MsG0480023714.01.T01:CDS
AGAGCGTCAAGACCATGTGT+TGG 0.635768 4:+88879709 MsG0480023714.01.T01:CDS
TTAACTAGTGTTCCAACACA+TGG 0.644317 4:-88879721 None:intergenic
CATGGTCTTGACGCTCTCTG+AGG 0.646274 4:-88879703 None:intergenic
TCTGACCACCAAAACGGACA+GGG 0.650091 4:-88878646 None:intergenic
GCTTCTAATCACATTAGAAG+GGG 0.654278 4:+88879577 MsG0480023714.01.T01:CDS
TCCTGGCTGCAATACAAGTG+GGG 0.672905 4:-88878427 None:intergenic
AAAACGGACAGGGAAGCTTG+AGG 0.682231 4:-88878636 None:intergenic
AATATTTCAAGAAATCATCG+AGG 0.751388 4:-88878718 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATATCTTTATTATTTTGA+GGG + Chr4:88878952-88878971 MsG0480023714.01.T01:intron 15.0%
!!! TTCATATCTTTATTATTTTG+AGG + Chr4:88878951-88878970 MsG0480023714.01.T01:intron 15.0%
!! GTATACATTAAATCTTAAGT+TGG + Chr4:88878883-88878902 MsG0480023714.01.T01:intron 20.0%
!! TTAATTCTAGTGAAGAAAAT+TGG + Chr4:88879740-88879759 MsG0480023714.01.T01:CDS 20.0%
!! TTAATTGATTAAACTTTGCA+GGG - Chr4:88879055-88879074 None:intergenic 20.0%
!! TTTAATTGATTAAACTTTGC+AGG - Chr4:88879056-88879075 None:intergenic 20.0%
!!! TTAACTGATTAAATTTTGCA+GGG + Chr4:88879206-88879225 MsG0480023714.01.T01:intron 20.0%
!!! TTAAGTTGGAAATAATAGAA+AGG + Chr4:88878897-88878916 MsG0480023714.01.T01:intron 20.0%
!!! TTTAACTGATTAAATTTTGC+AGG + Chr4:88879205-88879224 MsG0480023714.01.T01:intron 20.0%
! AAAAAGAGAGTAGTAATAAC+AGG + Chr4:88878515-88878534 MsG0480023714.01.T01:CDS 25.0%
! AATATTTCAAGAAATCATCG+AGG - Chr4:88878721-88878740 None:intergenic 25.0%
! ATCAGTTAAAAAAATAAGCC+AGG + Chr4:88879105-88879124 MsG0480023714.01.T01:intron 25.0%
! TAATTGATTAAACTTTGCAG+GGG - Chr4:88879054-88879073 None:intergenic 25.0%
! TCAGTTAAAAAAATAAGCCA+GGG + Chr4:88879106-88879125 MsG0480023714.01.T01:intron 25.0%
! TTGAAATATTGTTTAGTTGC+AGG + Chr4:88878731-88878750 MsG0480023714.01.T01:CDS 25.0%
!! AAAAAAGGATTAGTGATTAG+AGG + Chr4:88879234-88879253 MsG0480023714.01.T01:intron 25.0%
!! AAAAAGGATTAGTGATTAGA+GGG + Chr4:88879235-88879254 MsG0480023714.01.T01:intron 25.0%
!! TAACTGATTAAATTTTGCAG+GGG + Chr4:88879207-88879226 MsG0480023714.01.T01:intron 25.0%
!!! AAGTCAGAAGTATTTTTTGA+AGG + Chr4:88878805-88878824 MsG0480023714.01.T01:intron 25.0%
!!! GTTATTACTACTCTCTTTTT+TGG - Chr4:88878515-88878534 None:intergenic 25.0%
ACAAAATCTCAGAGAACAAT+GGG + Chr4:88878333-88878352 MsG0480023714.01.T01:CDS 30.0%
ACTATGAAAAAACTAGTGTG+TGG + Chr4:88879773-88879792 MsG0480023714.01.T01:CDS 30.0%
ACTTCTGACTTACATTGTTA+AGG - Chr4:88878796-88878815 None:intergenic 30.0%
AGAGAACAATGGGATATTTA+AGG + Chr4:88878343-88878362 MsG0480023714.01.T01:CDS 30.0%
AGAGTAGTAATAACAGGAAT+GGG + Chr4:88878521-88878540 MsG0480023714.01.T01:CDS 30.0%
AGGTATCAAACCTATCTATT+AGG - Chr4:88878619-88878638 None:intergenic 30.0%
ATGCTGTAGGGAATAAAAAA+TGG - Chr4:88879454-88879473 None:intergenic 30.0%
CAGTTAAAAAAATAAGCCAG+GGG + Chr4:88879107-88879126 MsG0480023714.01.T01:intron 30.0%
CATAGGTATAATTGAAGCTT+CGG - Chr4:88879632-88879651 None:intergenic 30.0%
CTATGAAAAAACTAGTGTGT+GGG + Chr4:88879774-88879793 MsG0480023714.01.T01:CDS 30.0%
GAAGCTTCAATTATACCTAT+GGG + Chr4:88879631-88879650 MsG0480023714.01.T01:CDS 30.0%
GCAGTAGAAATGGAATAATT+TGG - Chr4:88879526-88879545 None:intergenic 30.0%
GGTATCAAACCTATCTATTA+GGG - Chr4:88878618-88878637 None:intergenic 30.0%
TAACTATGAGTCATACTCAT+TGG - Chr4:88878833-88878852 None:intergenic 30.0%
TAATATGGGTTCTGCTTTAT+TGG + Chr4:88879477-88879496 MsG0480023714.01.T01:CDS 30.0%
TCTTCAAAAGGTTACATTGA+TGG + Chr4:88878680-88878699 MsG0480023714.01.T01:CDS 30.0%
TGCTTCTAATCACATTAGAA+GGG + Chr4:88879576-88879595 MsG0480023714.01.T01:CDS 30.0%
TGTTAGAACAACAACAGTTT+CGG - Chr4:88879322-88879341 None:intergenic 30.0%
! ATTTTACAACAAGCTTCTAG+AGG + Chr4:88878577-88878596 MsG0480023714.01.T01:CDS 30.0%
! TTTAACTGATTTCACGTGAA+AGG - Chr4:88879095-88879114 None:intergenic 30.0%
! TTTGGATCTTTCTCTCTTTT+AGG - Chr4:88878497-88878516 None:intergenic 30.0%
! TTTTACAACAAGCTTCTAGA+GGG + Chr4:88878578-88878597 MsG0480023714.01.T01:CDS 30.0%
AACAGTTTCGGTTCAAAAGA+AGG - Chr4:88879310-88879329 None:intergenic 35.0%
AAGGGGTGAAGTAGATATTA+TGG + Chr4:88879594-88879613 MsG0480023714.01.T01:CDS 35.0%
AATAGAAAGGAACTGCAATC+AGG + Chr4:88878910-88878929 MsG0480023714.01.T01:intron 35.0%
ACAGTTTCGGTTCAAAAGAA+GGG - Chr4:88879309-88879328 None:intergenic 35.0%
ACCCATATTAGAAATGCTGT+AGG - Chr4:88879467-88879486 None:intergenic 35.0%
ACGTCAGCAAATGACAAAAA+GGG - Chr4:88879153-88879172 None:intergenic 35.0%
ATGACATTCATTAGAACTGC+TGG + Chr4:88878281-88878300 MsG0480023714.01.T01:CDS 35.0%
CAGGAAATGCAAAACAATCA+AGG + Chr4:88878445-88878464 MsG0480023714.01.T01:CDS 35.0%
CAGTGATTAAATTGGGTCAA+AGG + Chr4:88879175-88879194 MsG0480023714.01.T01:intron 35.0%
CCCATATTAGAAATGCTGTA+GGG - Chr4:88879466-88879485 None:intergenic 35.0%
CCCTACAGCATTTCTAATAT+GGG + Chr4:88879463-88879482 MsG0480023714.01.T01:CDS 35.0%
CGAAGCTTCAATTATACCTA+TGG + Chr4:88879630-88879649 MsG0480023714.01.T01:CDS 35.0%
CTGCTTCTAATCACATTAGA+AGG + Chr4:88879575-88879594 MsG0480023714.01.T01:CDS 35.0%
GAAGTAGATATTATGGTGGT+TGG + Chr4:88879601-88879620 MsG0480023714.01.T01:CDS 35.0%
GACAAAATCTCAGAGAACAA+TGG + Chr4:88878332-88878351 MsG0480023714.01.T01:CDS 35.0%
GAGAGTAGTAATAACAGGAA+TGG + Chr4:88878520-88878539 MsG0480023714.01.T01:CDS 35.0%
GCTTCTAATCACATTAGAAG+GGG + Chr4:88879577-88879596 MsG0480023714.01.T01:CDS 35.0%
GTGGAATAACCCTAATAGAT+AGG + Chr4:88878606-88878625 MsG0480023714.01.T01:CDS 35.0%
GTTTCTGCTTACATCGAAAA+GGG + Chr4:88879412-88879431 MsG0480023714.01.T01:CDS 35.0%
TCAATTATACCTATGGGTGT+TGG + Chr4:88879637-88879656 MsG0480023714.01.T01:CDS 35.0%
TCCAAGATTAGCATCTTCAA+GGG - Chr4:88878765-88878784 None:intergenic 35.0%
TCCCTACAGCATTTCTAATA+TGG + Chr4:88879462-88879481 MsG0480023714.01.T01:CDS 35.0%
TGGAATAATTTGGTCCCATT+AGG - Chr4:88879516-88879535 None:intergenic 35.0%
TTAACTAGTGTTCCAACACA+TGG - Chr4:88879724-88879743 None:intergenic 35.0%
TTCCAAGATTAGCATCTTCA+AGG - Chr4:88878766-88878785 None:intergenic 35.0%
! AAAAAAGGATTAGCGATTGC+AGG - Chr4:88879027-88879046 None:intergenic 35.0%
! AAAAAGGATTAGCGATTGCA+GGG - Chr4:88879026-88879045 None:intergenic 35.0%
! ACATTGATGGCAAGAATGAT+CGG + Chr4:88878693-88878712 MsG0480023714.01.T01:CDS 35.0%
! ACTGTTGTTGTTCTAACAGA+TGG + Chr4:88879324-88879343 MsG0480023714.01.T01:intron 35.0%
! GCTTTATTGGCTATAGAAAC+TGG + Chr4:88879490-88879509 MsG0480023714.01.T01:CDS 35.0%
! TGTTTCTGCTTACATCGAAA+AGG + Chr4:88879411-88879430 MsG0480023714.01.T01:CDS 35.0%
! TTTTGCAGGGGCAAAAAAAA+AGG + Chr4:88879219-88879238 MsG0480023714.01.T01:intron 35.0%
!! CTTGATTGTTTTGCATTTCC+TGG - Chr4:88878447-88878466 None:intergenic 35.0%
!! TGAAGGCATTTGCATTCTTT+GGG - Chr4:88878381-88878400 None:intergenic 35.0%
ACTGCTGGTATATGTCCATT+AGG + Chr4:88878296-88878315 MsG0480023714.01.T01:CDS 40.0%
AGAAACAGCATCGCTAATAG+TGG - Chr4:88879398-88879417 None:intergenic 40.0%
ATACGCGATCTCTCTTCAAA+AGG + Chr4:88878668-88878687 MsG0480023714.01.T01:CDS 40.0%
ATGCAAAACAATCAAGGCCA+TGG + Chr4:88878451-88878470 MsG0480023714.01.T01:CDS 40.0%
ATTGTTTAGTTGCAGGCAAG+AGG + Chr4:88878738-88878757 MsG0480023714.01.T01:CDS 40.0%
CACGTCAGCAAATGACAAAA+AGG - Chr4:88879154-88879173 None:intergenic 40.0%
CAGATGGACAAAACCAGAAT+AGG + Chr4:88879340-88879359 MsG0480023714.01.T01:intron 40.0%
CTTACATCGAAAAGGGACAT+AGG + Chr4:88879419-88879438 MsG0480023714.01.T01:CDS 40.0%
CTTTGCAGGGGCAAAAAAAA+AGG - Chr4:88879042-88879061 None:intergenic 40.0%
GACGTGGCAGTGATTAAATT+GGG + Chr4:88879168-88879187 MsG0480023714.01.T01:intron 40.0%
GGGTGAAGTAGATATTATGG+TGG + Chr4:88879597-88879616 MsG0480023714.01.T01:CDS 40.0%
GTAGATATTATGGTGGTTGG+TGG + Chr4:88879604-88879623 MsG0480023714.01.T01:CDS 40.0%
TCCAACTAGAACTCCTATTC+TGG - Chr4:88879356-88879375 None:intergenic 40.0%
TGACGTGGCAGTGATTAAAT+TGG + Chr4:88879167-88879186 MsG0480023714.01.T01:intron 40.0%
TGTTGCACAAGCAGTAGAAA+TGG - Chr4:88879536-88879555 None:intergenic 40.0%
TTGTTTAGTTGCAGGCAAGA+GGG + Chr4:88878739-88878758 MsG0480023714.01.T01:CDS 40.0%
! ACCAGAATAGGAGTTCTAGT+TGG + Chr4:88879352-88879371 MsG0480023714.01.T01:CDS 40.0%
! ATAGGAGTTCTAGTTGGATC+AGG + Chr4:88879358-88879377 MsG0480023714.01.T01:CDS 40.0%
! ATGGGTCTTGTGTCAGTATT+TGG + Chr4:88878539-88878558 MsG0480023714.01.T01:CDS 40.0%
! GCTATAGAAACTGGCCTAAT+GGG + Chr4:88879499-88879518 MsG0480023714.01.T01:CDS 40.0%
! GTTCTAGTTGGATCAGGAAT+AGG + Chr4:88879364-88879383 MsG0480023714.01.T01:CDS 40.0%
!! ATTATACCTATGGGTGTTGG+AGG + Chr4:88879640-88879659 MsG0480023714.01.T01:CDS 40.0%
!! CTGAAGGCATTTGCATTCTT+TGG - Chr4:88878382-88878401 None:intergenic 40.0%
!! CTTTTTGTCATTTGCTGACG+TGG + Chr4:88879152-88879171 MsG0480023714.01.T01:intron 40.0%
!! GAAGGCATTTGCATTCTTTG+GGG - Chr4:88878380-88878399 None:intergenic 40.0%
ATGAATCCTCCAACACCCAT+AGG - Chr4:88879649-88879668 None:intergenic 45.0%
CTAGTTGGATCAGGAATAGG+TGG + Chr4:88879367-88879386 MsG0480023714.01.T01:CDS 45.0%
GCCCTTGAAGATGCTAATCT+TGG + Chr4:88878761-88878780 MsG0480023714.01.T01:CDS 45.0%
GTGATTCGTCCCTGCAAATA+GGG + Chr4:88878983-88879002 MsG0480023714.01.T01:intron 45.0%
GTGATTCGTCCCTGCAAATA+GGG - Chr4:88879002-88878983 None:intergenic 45.0%
TCTGTGAGCAATGCTCCTAA+TGG - Chr4:88878314-88878333 None:intergenic 45.0%
TGAAAGGACGAAAATACCCC+TGG - Chr4:88879126-88879145 None:intergenic 45.0%
TGATTCGTCCCTGCAAATAG+GGG - Chr4:88879003-88878984 None:intergenic 45.0%
TGGAGGATTCATTGCTTGCA+GGG + Chr4:88879657-88879676 MsG0480023714.01.T01:CDS 45.0%
TGTGATTCGTCCCTGCAAAT+AGG + Chr4:88878982-88879001 MsG0480023714.01.T01:intron 45.0%
TGTGATTCGTCCCTGCAAAT+AGG - Chr4:88879001-88878982 None:intergenic 45.0%
TTAAGCGACCCCTATTTGCA+GGG + Chr4:88879266-88879285 MsG0480023714.01.T01:intron 45.0%
TTAAGCGAGCCCTATTTGCA+GGG - Chr4:88878995-88879014 None:intergenic 45.0%
TTCACGTGAAAGGACGTGAA+AGG - Chr4:88879085-88879104 None:intergenic 45.0%
TTCCTGGCTGCAATACAAGT+GGG - Chr4:88878431-88878450 None:intergenic 45.0%
TTGGAGGATTCATTGCTTGC+AGG + Chr4:88879656-88879675 MsG0480023714.01.T01:CDS 45.0%
TTTAAGCGACCCCTATTTGC+AGG + Chr4:88879265-88879284 MsG0480023714.01.T01:intron 45.0%
TTTAAGCGAGCCCTATTTGC+AGG - Chr4:88878996-88879015 None:intergenic 45.0%
TTTCCTGGCTGCAATACAAG+TGG - Chr4:88878432-88878451 None:intergenic 45.0%
! AAGCTTCTAGAGGGAGAAAG+TGG + Chr4:88878587-88878606 MsG0480023714.01.T01:CDS 45.0%
! GGCTATAGAAACTGGCCTAA+TGG + Chr4:88879498-88879517 MsG0480023714.01.T01:CDS 45.0%
! TGACAAAAAGGGCACGTGAA+AGG - Chr4:88879142-88879161 None:intergenic 45.0%
! TTTTGCATGCATGCAGCTGA+AGG - Chr4:88878398-88878417 None:intergenic 45.0%
!! CTTTTAGGAGCTGCAACAGT+TGG - Chr4:88878482-88878501 None:intergenic 45.0%
AAAACGGACAGGGAAGCTTG+AGG - Chr4:88878639-88878658 None:intergenic 50.0%
ATCTGACCACCAAAACGGAC+AGG - Chr4:88878650-88878669 None:intergenic 50.0%
CGCGTATCTGACCACCAAAA+CGG - Chr4:88878655-88878674 None:intergenic 50.0%
TCCTGGCTGCAATACAAGTG+GGG - Chr4:88878430-88878449 None:intergenic 50.0%
TCTGACCACCAAAACGGACA+GGG - Chr4:88878649-88878668 None:intergenic 50.0%
TGCAACAGTTGGAGAAGCCA+TGG - Chr4:88878471-88878490 None:intergenic 50.0%
! AGAGCGTCAAGACCATGTGT+TGG + Chr4:88879709-88879728 MsG0480023714.01.T01:CDS 50.0%
! CTTGCAGGGCTTTGTCTCAA+AGG + Chr4:88879671-88879690 MsG0480023714.01.T01:CDS 50.0%
! TCAAGCTTCCCTGTCCGTTT+TGG + Chr4:88878638-88878657 MsG0480023714.01.T01:CDS 50.0%
TCCCCACTTGTATTGCAGCC+AGG + Chr4:88878426-88878445 MsG0480023714.01.T01:CDS 55.0%
! AGCTTCCCTGTCCGTTTTGG+TGG + Chr4:88878641-88878660 MsG0480023714.01.T01:CDS 55.0%
! CATGGTCTTGACGCTCTCTG+AGG - Chr4:88879706-88879725 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr4 gene 88878281 88879801 88878281 ID=MsG0480023714.01;Name=MsG0480023714.01
Chr4 mRNA 88878281 88879801 88878281 ID=MsG0480023714.01.T01;Parent=MsG0480023714.01;Name=MsG0480023714.01.T01;_AED=0.50;_eAED=0.54;_QI=0|0|0|1|1|1|2|0|326
Chr4 exon 88878281 88878802 88878281 ID=MsG0480023714.01.T01:exon:13017;Parent=MsG0480023714.01.T01
Chr4 exon 88879343 88879801 88879343 ID=MsG0480023714.01.T01:exon:13018;Parent=MsG0480023714.01.T01
Chr4 CDS 88878281 88878802 88878281 ID=MsG0480023714.01.T01:cds;Parent=MsG0480023714.01.T01
Chr4 CDS 88879343 88879801 88879343 ID=MsG0480023714.01.T01:cds;Parent=MsG0480023714.01.T01
Gene Sequence

>MsG0480023714.01.T01

ATGACATTCATTAGAACTGCTGGTATATGTCCATTAGGAGCATTGCTCACAGACAAAATCTCAGAGAACAATGGGATATTTAAGGTTCAGTTATTGCCCCAAAGAATGCAAATGCCTTCAGCTGCATGCATGCAAAAAAACTACGTCCCCACTTGTATTGCAGCCAGGAAATGCAAAACAATCAAGGCCATGGCTTCTCCAACTGTTGCAGCTCCTAAAAGAGAGAAAGATCCAAAAAAGAGAGTAGTAATAACAGGAATGGGTCTTGTGTCAGTATTTGGAAGTGACATAGATACATTTTACAACAAGCTTCTAGAGGGAGAAAGTGGAATAACCCTAATAGATAGGTTTGATACCTCAAGCTTCCCTGTCCGTTTTGGTGGTCAGATACGCGATCTCTCTTCAAAAGGTTACATTGATGGCAAGAATGATCGGCGCCTCGATGATTTCTTGAAATATTGTTTAGTTGCAGGCAAGAGGGCCCTTGAAGATGCTAATCTTGGAAATGAAGTCCTTAACAATATGGACAAAACCAGAATAGGAGTTCTAGTTGGATCAGGAATAGGTGGTTTAACCACTATTAGCGATGCTGTTTCTGCTTACATCGAAAAGGGACATAGGAAAATTAATCCATTTTTTATTCCCTACAGCATTTCTAATATGGGTTCTGCTTTATTGGCTATAGAAACTGGCCTAATGGGACCAAATTATTCCATTTCTACTGCTTGTGCAACAGCAAATTACTGCTTTTGTGCTGCTTCTAATCACATTAGAAGGGGTGAAGTAGATATTATGGTGGTTGGTGGTTCCGAAGCTTCAATTATACCTATGGGTGTTGGAGGATTCATTGCTTGCAGGGCTTTGTCTCAAAGGAATGAAGAGCCTCAGAGAGCGTCAAGACCATGTGTTGGAACACTAGTTAATTCTAGTGAAGAAAATTGGAAAGAAAAACACTATGAAAAAACTAGTGTGTGGGTGTGA
Protein sequence

>MsG0480023714.01.T01

MTFIRTAGICPLGALLTDKISENNGIFKVQLLPQRMQMPSAACMQKNYVPTCIAARKCKTIKAMASPTVAAPKREKDPKKRVVITGMGLVSVFGSDIDTFYNKLLEGESGITLIDRFDTSSFPVRFGGQIRDLSSKGYIDGKNDRRLDDFLKYCLVAGKRALEDANLGNEVLNNMDKTRIGVLVGSGIGGLTTISDAVSAYIEKGHRKINPFFIPYSISNMGSALLAIETGLMGPNYSISTACATANYCFCAASNHIRRGEVDIMVVGGSEASIIPMGVGGFIACRALSQRNEEPQRASRPCVGTLVNSSEENWKEKHYEKTSVWV*