AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024131.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024131.01.T01 MTR_5g006180 95.455 572 12 1 1 572 1 558 0.0 1116
MsG0580024131.01.T01 MTR_5g090110 78.483 567 71 5 8 572 7 524 0.0 885
MsG0580024131.01.T01 MTR_4g115780 61.345 595 201 8 1 571 101 690 0.0 665
MsG0580024131.01.T01 MTR_4g107920 57.041 561 206 13 19 569 10 545 0.0 573
MsG0580024131.01.T01 MTR_7g024390 37.228 505 290 10 29 523 9 496 1.97e-98 313
MsG0580024131.01.T01 MTR_7g024580 37.426 505 289 10 29 523 9 496 4.68e-98 312
MsG0580024131.01.T01 MTR_4g130540 36.853 502 296 10 29 523 8 495 5.75e-98 311
MsG0580024131.01.T01 MTR_4g063720 36.634 505 293 10 29 523 9 496 1.87e-96 308
MsG0580024131.01.T01 MTR_7g099680 36.170 517 279 11 29 523 9 496 3.05e-96 307
MsG0580024131.01.T01 MTR_4g063710 36.832 505 292 10 29 523 9 496 3.39e-96 307
MsG0580024131.01.T01 MTR_4g103780 40.570 456 151 7 118 569 1 340 6.27e-94 291
MsG0580024131.01.T01 MTR_2g038260 35.509 521 292 14 29 530 9 504 1.04e-87 284
MsG0580024131.01.T01 MTR_8g032650 35.271 516 302 14 28 531 8 503 7.82e-87 282
MsG0580024131.01.T01 MTR_7g025770 34.308 513 308 12 29 530 9 503 1.75e-86 281
MsG0580024131.01.T01 MTR_2g437440 35.742 512 303 11 29 530 9 504 1.87e-86 280
MsG0580024131.01.T01 MTR_7g451380 36.078 510 306 10 29 531 9 505 1.31e-85 278
MsG0580024131.01.T01 MTR_2g032550 35.897 507 295 13 29 523 10 498 1.51e-85 278
MsG0580024131.01.T01 MTR_7g026170 36.078 510 303 13 29 530 9 503 2.48e-85 278
MsG0580024131.01.T01 MTR_7g025620 33.704 540 328 13 29 557 9 529 1.03e-84 276
MsG0580024131.01.T01 MTR_7g026090 33.640 544 323 14 29 554 9 532 2.50e-84 275
MsG0580024131.01.T01 MTR_8g099945 33.779 524 298 12 19 523 29 522 5.14e-84 275
MsG0580024131.01.T01 MTR_8g099795 33.015 524 308 10 16 523 26 522 2.32e-83 274
MsG0580024131.01.T01 MTR_7g026110 34.100 522 317 13 28 539 8 512 4.07e-83 271
MsG0580024131.01.T01 MTR_2g017730 32.943 513 307 11 29 523 8 501 9.98e-83 270
MsG0580024131.01.T01 MTR_7g025760 34.653 505 305 11 28 523 8 496 1.34e-82 270
MsG0580024131.01.T01 MTR_7g029415 35.534 515 298 17 29 530 16 509 3.06e-82 270
MsG0580024131.01.T01 MTR_7g074460 33.658 514 304 12 28 535 8 490 4.54e-82 268
MsG0580024131.01.T01 MTR_7g021440 35.714 504 299 11 29 523 9 496 3.64e-81 266
MsG0580024131.01.T01 MTR_5g066800 35.135 518 294 15 29 523 9 507 3.25e-80 264
MsG0580024131.01.T01 MTR_7g025820 33.789 512 314 11 29 531 9 504 5.60e-80 263
MsG0580024131.01.T01 MTR_1g017130 33.792 509 276 15 29 530 9 463 6.23e-80 263
MsG0580024131.01.T01 MTR_2g022050 36.505 515 297 12 28 530 8 504 2.22e-79 262
MsG0580024131.01.T01 MTR_7g026130 35.465 516 297 17 29 529 9 503 2.26e-79 264
MsG0580024131.01.T01 MTR_7g026030 33.270 523 317 14 29 539 9 511 7.04e-79 261
MsG0580024131.01.T01 MTR_7g025720 33.465 508 306 11 28 523 8 495 8.41e-78 258
MsG0580024131.01.T01 MTR_7g025790 33.268 514 313 15 29 531 9 503 1.52e-77 257
MsG0580024131.01.T01 MTR_2g038270 32.946 516 320 13 30 531 10 513 2.94e-77 256
MsG0580024131.01.T01 MTR_7g026140 35.283 513 287 16 29 530 9 487 4.86e-77 256
MsG0580024131.01.T01 MTR_4g079590 33.399 506 308 13 29 523 9 496 6.63e-76 253
MsG0580024131.01.T01 MTR_7g025630 34.357 521 302 14 28 539 8 497 1.72e-75 251
MsG0580024131.01.T01 MTR_6g033850 31.898 511 308 11 27 521 7 493 2.03e-75 253
MsG0580024131.01.T01 MTR_6g033760 32.495 517 301 14 27 523 7 495 1.07e-74 250
MsG0580024131.01.T01 MTR_2g032580 33.333 516 300 13 28 532 8 490 3.14e-74 248
MsG0580024131.01.T01 MTR_7g025260 36.034 469 259 12 79 523 17 468 5.38e-74 247
MsG0580024131.01.T01 MTR_7g078210 35.078 516 302 17 29 531 9 504 6.48e-74 248
MsG0580024131.01.T01 MTR_4g027145 33.526 519 316 14 29 530 9 515 8.67e-74 248
MsG0580024131.01.T01 MTR_7g024030 33.074 514 314 14 29 531 9 503 1.34e-73 246
MsG0580024131.01.T01 MTR_7g011590 33.333 510 304 12 29 530 9 490 9.59e-73 244
MsG0580024131.01.T01 MTR_8g103930 32.588 537 284 16 27 530 9 500 7.56e-72 242
MsG0580024131.01.T01 MTR_6g033820 33.465 508 309 14 27 521 7 498 1.52e-71 243
MsG0580024131.01.T01 MTR_7g078190 33.981 515 310 16 29 531 9 505 1.83e-71 241
MsG0580024131.01.T01 MTR_6g033955 32.079 505 320 12 27 521 7 498 1.96e-71 241
MsG0580024131.01.T01 MTR_2g010020 30.948 517 294 11 30 523 57 533 2.15e-69 236
MsG0580024131.01.T01 MTR_2g010020 31.141 517 293 11 30 523 58 534 2.86e-69 236
MsG0580024131.01.T01 MTR_7g025740 32.233 515 312 12 28 523 8 504 2.96e-69 236
MsG0580024131.01.T01 MTR_4g092920 29.250 547 315 12 5 523 29 531 1.37e-68 234
MsG0580024131.01.T01 MTR_6g033870 32.759 522 295 16 27 521 8 500 1.53e-68 234
MsG0580024131.01.T01 MTR_7g451360 33.268 511 260 13 29 531 9 446 1.42e-66 226
MsG0580024131.01.T01 MTR_7g007000 32.427 515 272 18 29 530 9 460 1.16e-61 214
MsG0580024131.01.T01 MTR_2g005690 31.961 510 306 16 27 523 69 550 3.27e-61 215
MsG0580024131.01.T01 MTR_4g092920 32.316 393 235 7 141 523 26 397 8.91e-61 210
MsG0580024131.01.T01 MTR_6g033800 31.796 412 268 7 112 521 2 402 2.07e-60 210
MsG0580024131.01.T01 MTR_2g040160 33.753 397 233 12 29 414 1109 1486 1.26e-52 194
MsG0580024131.01.T01 MTR_2g032160 33.158 380 236 9 28 400 8 376 5.30e-52 185
MsG0580024131.01.T01 MTR_2g040370 32.836 402 224 10 29 411 1029 1403 3.12e-51 190
MsG0580024131.01.T01 MTR_2g040370 32.992 391 215 11 29 399 1413 1776 1.09e-49 186
MsG0580024131.01.T01 MTR_2g040370 32.836 402 224 10 29 411 1029 1403 3.65e-51 190
MsG0580024131.01.T01 MTR_2g040370 33.251 406 224 11 29 414 1413 1791 8.33e-50 186
MsG0580024131.01.T01 MTR_2g040220 32.398 392 239 11 30 410 1019 1395 7.14e-51 189
MsG0580024131.01.T01 MTR_2g040220 59.184 49 20 0 475 523 1399 1447 1.11e-11 68.6
MsG0580024131.01.T01 MTR_7g035155 30.545 514 272 18 29 530 9 449 4.81e-50 182
MsG0580024131.01.T01 MTR_4g063720 43.689 206 109 2 321 523 224 425 1.11e-48 178
MsG0580024131.01.T01 MTR_4g063720 32.287 223 141 4 29 250 9 222 4.27e-25 110
MsG0580024131.01.T01 MTR_2g040260 31.807 393 246 9 29 414 1038 1415 1.39e-47 179
MsG0580024131.01.T01 MTR_1g041565 29.175 497 266 15 29 521 5 419 1.39e-46 172
MsG0580024131.01.T01 MTR_2g040350 32.242 397 241 11 30 414 1039 1419 1.78e-46 176
MsG0580024131.01.T01 MTR_2g040350 32.242 397 241 11 30 414 821 1201 2.00e-46 176
MsG0580024131.01.T01 MTR_4g115860 67.480 123 40 0 395 517 1 123 3.61e-45 155
MsG0580024131.01.T01 MTR_4g115870 42.000 250 76 7 92 338 57 240 3.71e-45 160
MsG0580024131.01.T01 MTR_6g034005 29.384 422 273 10 104 521 4 404 7.63e-45 169
MsG0580024131.01.T01 MTR_7g026080 33.865 251 148 8 29 273 9 247 1.74e-35 134
MsG0580024131.01.T01 MTR_1g077230 31.944 288 173 9 29 307 9 282 1.08e-30 121
MsG0580024131.01.T01 MTR_7g026050 30.769 260 140 8 270 523 1 226 2.47e-28 116
MsG0580024131.01.T01 MTR_1g077240 36.216 185 113 3 348 531 3 183 1.11e-27 113
MsG0580024131.01.T01 MTR_4g012050 25.316 474 315 11 30 476 4 465 3.30e-27 117
MsG0580024131.01.T01 MTR_2g031670 33.878 245 141 9 41 275 43 276 3.91e-27 112
MsG0580024131.01.T01 MTR_4g115785 65.789 76 26 0 467 542 7 82 6.85e-27 104
MsG0580024131.01.T01 MTR_6g033855 25.781 384 190 9 108 488 8 299 9.89e-27 111
MsG0580024131.01.T01 MTR_3g051300 25.799 438 291 13 30 455 4 419 9.44e-26 112
MsG0580024131.01.T01 MTR_4g088515 30.255 314 178 10 29 333 276 557 1.67e-25 111
MsG0580024131.01.T01 MTR_4g088515 34.848 132 72 4 333 463 501 619 9.24e-12 68.2
MsG0580024131.01.T01 MTR_5g005870 32.995 197 124 3 329 523 75 265 8.32e-25 107
MsG0580024131.01.T01 MTR_2g102180 23.608 449 312 10 30 461 4 438 5.01e-23 104
MsG0580024131.01.T01 MTR_5g092570 24.719 445 301 13 30 459 4 429 5.04e-21 97.8
MsG0580024131.01.T01 MTR_6g033810 27.632 228 156 5 221 440 63 289 2.33e-19 89.4
MsG0580024131.01.T01 MTR_3g081170 22.846 499 313 15 23 479 20 488 5.11e-18 88.6
MsG0580024131.01.T01 MTR_7g074540 46.667 90 47 1 446 535 4 92 2.23e-16 78.2
MsG0580024131.01.T01 MTR_6g478100 30.097 206 115 7 90 293 39 217 2.55e-15 77.8
MsG0580024131.01.T01 MTR_1207s0010 32.168 143 89 2 134 275 7 142 4.75e-15 73.9
MsG0580024131.01.T01 MTR_5g097190 30.396 227 115 9 29 240 158 356 1.08e-13 73.2
MsG0580024131.01.T01 MTR_7g026180 34.959 123 78 2 98 219 23 144 9.39e-13 70.1
MsG0580024131.01.T01 MTR_7g451390 44.928 69 37 1 455 523 2 69 2.86e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024131.01.T01 AT2G32120 73.860 570 135 2 5 571 3 561 0.0 897
MsG0580024131.01.T01 AT2G32120 73.860 570 135 2 5 571 3 561 0.0 897
MsG0580024131.01.T01 AT3G12580 37.426 505 289 10 29 523 9 496 8.14e-102 322
MsG0580024131.01.T01 AT5G02500 37.030 505 291 10 29 523 9 496 4.30e-99 315
MsG0580024131.01.T01 AT3G09440 37.228 505 290 10 29 523 9 496 9.07e-98 311
MsG0580024131.01.T01 AT3G09440 37.228 505 290 10 29 523 9 496 9.07e-98 311
MsG0580024131.01.T01 AT3G09440 37.228 505 290 10 29 523 9 496 9.07e-98 311
MsG0580024131.01.T01 AT3G09440 37.228 505 290 10 29 523 9 496 9.07e-98 311
MsG0580024131.01.T01 AT1G16030 36.047 516 285 10 27 523 6 495 1.46e-97 310
MsG0580024131.01.T01 AT1G56410 37.030 505 291 10 29 523 9 496 1.82e-94 301
MsG0580024131.01.T01 AT5G02490 35.842 505 297 10 29 523 9 496 6.51e-94 301
MsG0580024131.01.T01 AT1G09080 34.469 499 306 8 30 523 43 525 4.16e-86 281
MsG0580024131.01.T01 AT1G09080 34.469 499 306 8 30 523 53 535 5.71e-86 281
MsG0580024131.01.T01 AT5G42020 33.074 514 321 10 16 523 25 521 1.40e-84 277
MsG0580024131.01.T01 AT5G42020 33.074 514 321 10 16 523 30 526 2.65e-84 276
MsG0580024131.01.T01 AT5G28540 33.600 500 310 9 30 523 38 521 2.62e-83 274
MsG0580024131.01.T01 AT5G42020 33.268 511 317 11 16 519 25 518 3.41e-83 272
MsG0580024131.01.T01 AT5G09590 30.460 522 307 10 22 523 52 537 8.67e-67 230
MsG0580024131.01.T01 AT4G37910 30.857 525 301 11 22 523 47 532 5.55e-64 222
MsG0580024131.01.T01 AT4G37910 30.857 525 301 11 22 523 47 532 5.55e-64 222
MsG0580024131.01.T01 AT5G02500 34.097 393 239 8 29 414 9 388 1.20e-62 215
MsG0580024131.01.T01 AT5G49910 31.299 508 312 14 27 523 78 559 2.17e-60 213
MsG0580024131.01.T01 AT4G24280 31.434 509 310 15 27 523 78 559 4.68e-59 209
MsG0580024131.01.T01 AT1G11660 26.464 461 305 16 30 476 4 444 5.24e-27 116
MsG0580024131.01.T01 AT1G11660 26.464 461 305 16 30 476 4 444 5.24e-27 116
MsG0580024131.01.T01 AT1G11660 26.464 461 305 16 30 476 4 444 5.24e-27 116
MsG0580024131.01.T01 AT1G79930 24.944 449 306 10 30 461 4 438 7.26e-26 113
MsG0580024131.01.T01 AT1G79930 24.944 449 306 10 30 461 4 438 7.87e-26 112
MsG0580024131.01.T01 AT1G11660 27.250 400 259 15 91 476 26 407 1.12e-23 106
MsG0580024131.01.T01 AT1G79920 24.499 449 308 10 30 461 4 438 1.30e-23 105
MsG0580024131.01.T01 AT1G79920 24.499 449 308 10 30 461 4 438 1.39e-23 105
MsG0580024131.01.T01 AT1G79920 24.499 449 308 10 30 461 4 438 1.39e-23 105
MsG0580024131.01.T01 AT1G79920 24.499 449 308 10 30 461 4 438 1.39e-23 105
MsG0580024131.01.T01 AT4G16660 25.000 360 237 10 143 480 140 488 6.00e-19 91.7
MsG0580024131.01.T01 AT4G16660 25.000 360 237 10 143 480 164 512 6.44e-19 91.3

Find 169 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAGGATATTTCAAGATAA+TGG 0.182846 5:+1223801 MsG0580024131.01.T01:CDS
TGGCACCATAGGTCCTATTT+AGG 0.200225 5:-1224002 None:intergenic
AGAAGTCCTTGCAATGTTTC+TGG 0.201625 5:+1222766 MsG0580024131.01.T01:CDS
TCCATGCACACACTGATTTC+AGG 0.246998 5:-1223850 None:intergenic
CATCAACCTGAACACTGTTT+TGG 0.251584 5:-1223264 None:intergenic
TTCACTAACGCAGCAATAAA+TGG 0.261599 5:-1222716 None:intergenic
CAGTGATCCCTTTGGAAACT+TGG 0.262026 5:+1223582 MsG0580024131.01.T01:CDS
TCAATTCCAATCGCTATTTC+AGG 0.266817 5:-1222413 None:intergenic
GTGGTGTTCCTTGGAATTAC+AGG 0.282170 5:-1223670 None:intergenic
CTGATTTCAGGAACTCCTTT+TGG 0.283375 5:-1223838 None:intergenic
GAAAGCTTCTCAAGAAACTA+TGG 0.285521 5:+1222979 MsG0580024131.01.T01:CDS
TTCAAAGATGAAGCTCCTTC+TGG 0.291335 5:+1222536 MsG0580024131.01.T01:CDS
TGTTCAGGTTGATGTAGATT+TGG 0.301572 5:+1223273 MsG0580024131.01.T01:CDS
CTATGGTGCCACAATGGATT+TGG 0.318656 5:+1224014 MsG0580024131.01.T01:CDS
AACATTGCAAGGACTTCTTC+TGG 0.325894 5:-1222761 None:intergenic
AAATGTGGTGCTTACTGTTC+CGG 0.327314 5:+1222835 MsG0580024131.01.T01:CDS
TTAGGATATTTCAAGATAAT+GGG 0.332403 5:+1223802 MsG0580024131.01.T01:CDS
ACAGCAGTGGCGTTATTATA+TGG 0.334823 5:+1222944 MsG0580024131.01.T01:CDS
ATAGCGATTGGAATTGATAT+TGG 0.340874 5:+1222419 MsG0580024131.01.T01:CDS
CACAGGAAGACAACTAAAAT+AGG 0.343067 5:-1224080 None:intergenic
TTCTAATTAATACAAACAAC+AGG 0.351814 5:-1221154 None:intergenic
TAACAGGAACCACAGGTATA+CGG 0.354309 5:-1223927 None:intergenic
TATACCTGTGGTTCCTGTTA+TGG 0.355381 5:+1223930 MsG0580024131.01.T01:CDS
GGCACCATAGGTCCTATTTA+GGG 0.356331 5:-1224001 None:intergenic
TACCATCGGTGGAGAAGATT+TGG 0.359082 5:+1223114 MsG0580024131.01.T01:CDS
ATGTAAATCAACTTCTATTC+TGG 0.362470 5:-1224105 None:intergenic
GGCATCCTCACTTCCATAAC+AGG 0.366255 5:-1223943 None:intergenic
GTTCAGGTTGATGTAGATTT+GGG 0.369664 5:+1223274 MsG0580024131.01.T01:CDS
AACGCCACTGCTGTTGGTTC+AGG 0.370548 5:-1222935 None:intergenic
ATGGAAGGAGCTGTTGCTTC+AGG 0.378268 5:+1223556 MsG0580024131.01.T01:CDS
GTAAGCACCACATTTCTTAT+CGG 0.392583 5:-1222827 None:intergenic
CACGACCATGAGATGCTGTT+TGG 0.393050 5:+1222581 MsG0580024131.01.T01:CDS
TCGCACAAGCACGCTCTAAA+CGG 0.395103 5:-1222883 None:intergenic
CATGTAAACATTGGATGATA+AGG 0.397163 5:-1223378 None:intergenic
TCCAAGGTCTGCACCAGAAA+TGG 0.397431 5:-1222680 None:intergenic
GCAGAAGAAAACCACTTGTT+AGG 0.403341 5:+1223784 MsG0580024131.01.T01:CDS
TGGCTGGTCTTCATGTTCTC+AGG 0.414478 5:+1222906 MsG0580024131.01.T01:CDS
TTATAAAGGTATAAACCCTT+TGG 0.418915 5:+1223510 MsG0580024131.01.T01:CDS
TGTTGACAGGGCAGAGTTTG+AGG 0.419368 5:+1223321 MsG0580024131.01.T01:CDS
TTCCACCCAAAACAGTGTTC+AGG 0.429991 5:+1223258 MsG0580024131.01.T01:CDS
AAAATAACAGAAGTTTATAA+AGG 0.432441 5:+1223496 MsG0580024131.01.T01:CDS
CATGATGCAAAGGTAGAAGT+TGG 0.434870 5:+1223397 MsG0580024131.01.T01:CDS
CCTTTGGAAGGTGCGGTTTG+TGG 0.435575 5:+1223526 MsG0580024131.01.T01:CDS
CACGCTCTAAACGGGTCAGC+TGG 0.440361 5:-1222874 None:intergenic
GGTGTGCTGAGGCCCTAAAT+AGG 0.444919 5:+1223989 MsG0580024131.01.T01:CDS
GCCATTTCTGGTGCAGACCT+TGG 0.447888 5:+1222679 MsG0580024131.01.T01:CDS
ATGATGCAAAGGTAGAAGTT+GGG 0.448859 5:+1223398 MsG0580024131.01.T01:CDS
GCTGGCATTGTGGTGTTCCT+TGG 0.449119 5:-1223679 None:intergenic
GCATCTGACAGTGAAACAAC+TGG 0.449771 5:+1222368 MsG0580024131.01.T01:CDS
ATCAATTTATGCCTTCTTGA+GGG 0.450343 5:-1224040 None:intergenic
CTGCGTTAGTGAACAATGTC+TGG 0.455549 5:+1222726 MsG0580024131.01.T01:CDS
TCAGGCATCAGTGATCCCTT+TGG 0.456587 5:+1223574 MsG0580024131.01.T01:CDS
CTGGTGCAGACCTTGGACAT+TGG 0.457903 5:+1222686 MsG0580024131.01.T01:CDS
AAAATATATTCAAGCGTCAC+GGG 0.457910 5:+1223173 MsG0580024131.01.T01:CDS
GCCATTGGAATTCGAGCTGA+TGG 0.458770 5:+1223634 MsG0580024131.01.T01:CDS
ATAAATGATGTGATACTTGT+TGG 0.460986 5:+1223424 MsG0580024131.01.T01:CDS
CGCACAAGCACGCTCTAAAC+GGG 0.463935 5:-1222882 None:intergenic
GTAACAAGATTCTCCACCCT+TGG 0.466538 5:-1223463 None:intergenic
GAGCGTGCTTGTGCGATGGC+TGG 0.467592 5:+1222890 MsG0580024131.01.T01:CDS
TTAGCCGGTGTTGTGATGCC+TGG 0.471501 5:+1223901 MsG0580024131.01.T01:CDS
GGTCAAAGAAATTAAATCAA+TGG 0.475595 5:+1223195 MsG0580024131.01.T01:CDS
TGGAAACGACTGAATGAAAC+CGG 0.482736 5:-1222854 None:intergenic
CAAGCCACTCCTCTTGCCAT+TGG 0.482744 5:+1223619 MsG0580024131.01.T01:CDS
CCAATCGCTATTTCAGGAAG+AGG 0.484412 5:-1222407 None:intergenic
GTTGATGTAGATTTGGGAGA+TGG 0.485617 5:+1223280 MsG0580024131.01.T01:CDS
AAAGTTGATGAATTGCATCC+TGG 0.486972 5:-1223237 None:intergenic
TATAATAACGCCACTGCTGT+TGG 0.489694 5:-1222941 None:intergenic
TAACAAGATTCTCCACCCTT+GGG 0.492275 5:-1223462 None:intergenic
CAAATCCATTGTGGCACCAT+AGG 0.497810 5:-1224013 None:intergenic
CCTCTTCCTGAAATAGCGAT+TGG 0.506297 5:+1222407 MsG0580024131.01.T01:CDS
GTTGCTGTGACTGCTACCGC+CGG 0.506470 5:+1223058 MsG0580024131.01.T01:CDS
CACCACAATGCCAGCACGTA+AGG 0.509986 5:+1223687 MsG0580024131.01.T01:CDS
TTGCTGTGACTGCTACCGCC+GGG 0.511136 5:+1223059 MsG0580024131.01.T01:CDS
AACAAGTCCAAGTTTCCAAA+GGG 0.511681 5:-1223589 None:intergenic
AGATATGCAAGGTTGTTGAC+AGG 0.512232 5:+1223308 MsG0580024131.01.T01:CDS
TATCAATTTATGCCTTCTTG+AGG 0.516603 5:-1224041 None:intergenic
AACAGGAACCACAGGTATAC+GGG 0.517047 5:-1223926 None:intergenic
GGAATACCTGCAGCACCAAA+AGG 0.524506 5:+1223823 MsG0580024131.01.T01:CDS
CAAACAGCATCTCATGGTCG+TGG 0.528773 5:-1222580 None:intergenic
CACAAACCGCACCTTCCAAA+GGG 0.529952 5:-1223525 None:intergenic
TTCAATATGAAACGCTTGAT+CGG 0.530493 5:+1222614 MsG0580024131.01.T01:CDS
CCTTTGCATCATGTAAACAT+TGG 0.531721 5:-1223387 None:intergenic
GAGGCCCTAAATAGGACCTA+TGG 0.533257 5:+1223997 MsG0580024131.01.T01:CDS
TGCGGTTTGTGGTGCAGCAA+TGG 0.533347 5:+1223537 MsG0580024131.01.T01:CDS
ACCACAGGTATACGGGATCC+AGG 0.535468 5:-1223919 None:intergenic
TCCTGAAATCAGTGTGTGCA+TGG 0.540172 5:+1223849 MsG0580024131.01.T01:CDS
TCTTGAAATATCCTAACAAG+TGG 0.545629 5:-1223795 None:intergenic
CAACTTCTATTCTGGAACAC+AGG 0.558395 5:-1224097 None:intergenic
AAGGACTTCTTCTGGAGTGG+TGG 0.559811 5:-1222753 None:intergenic
TGCAAGGACTTCTTCTGGAG+TGG 0.559852 5:-1222756 None:intergenic
TCCCAGATAAAAGCATTGGC+AGG 0.560848 5:+1223088 MsG0580024131.01.T01:CDS
AAAAGTAGATCCTTACGTGC+TGG 0.561163 5:-1223697 None:intergenic
TCTCAAGAAACTATGGGCAG+TGG 0.563843 5:+1222986 MsG0580024131.01.T01:CDS
GGATTTGGTTACCCTCAAGA+AGG 0.565408 5:+1224029 MsG0580024131.01.T01:CDS
GAAAATATATTCAAGCGTCA+CGG 0.565923 5:+1223172 MsG0580024131.01.T01:CDS
AACCAAATCTTCTCCACCGA+TGG 0.568389 5:-1223116 None:intergenic
TGGACGAACGCCAATGTCCA+AGG 0.570950 5:-1222696 None:intergenic
GTACGAAGGTGAGGGAAAGA+AGG 0.571023 5:+1223762 MsG0580024131.01.T01:CDS
TTTAGAGCGTGCTTGTGCGA+TGG 0.572607 5:+1222886 MsG0580024131.01.T01:CDS
TCAGATGCAACGGTATATGC+AGG 0.578112 5:-1222353 None:intergenic
GATACTTGTGTACGAAGGTG+AGG 0.578994 5:+1223753 MsG0580024131.01.T01:CDS
AAAGGTATAAACCCTTTGGA+AGG 0.581870 5:+1223514 MsG0580024131.01.T01:CDS
TGTTTCACTGTCAGATGCAA+CGG 0.582470 5:-1222363 None:intergenic
CCCATCAGCTCGAATTCCAA+TGG 0.583989 5:-1223635 None:intergenic
TAACAAGTCCAAGTTTCCAA+AGG 0.584586 5:-1223590 None:intergenic
GAGGATGTTCTTATATCCCA+AGG 0.584781 5:+1223446 MsG0580024131.01.T01:CDS
CCATGACCATCATCAACCAT+TGG 0.585720 5:-1223964 None:intergenic
AGTCCTTGCAATGTTTCTGG+TGG 0.586924 5:+1222769 MsG0580024131.01.T01:CDS
AGTATCCCAGATAAAAGCAT+TGG 0.589832 5:+1223084 MsG0580024131.01.T01:CDS
ATTGCTTCGAGTTGCAACCC+AGG 0.590200 5:+1223219 MsG0580024131.01.T01:CDS
CCACAAACCGCACCTTCCAA+AGG 0.591096 5:-1223526 None:intergenic
TGTAGTGTTGCTGTGTGGAA+TGG 0.591608 5:+1222452 MsG0580024131.01.T01:CDS
TGATGCAAAGGTAGAAGTTG+GGG 0.591780 5:+1223399 MsG0580024131.01.T01:CDS
CCAATGTTTACATGATGCAA+AGG 0.592560 5:+1223387 MsG0580024131.01.T01:CDS
AAGTTGATGAATTGCATCCT+GGG 0.594840 5:-1223236 None:intergenic
TGCTGTGACTGCTACCGCCG+GGG 0.595836 5:+1223060 MsG0580024131.01.T01:CDS
CACAGCAACACTACATTGTG+AGG 0.598044 5:-1222444 None:intergenic
CATCTGACAGTGAAACAACT+GGG 0.598563 5:+1222369 MsG0580024131.01.T01:CDS
AAAGATGAAGCTCCTTCTGG+AGG 0.598661 5:+1222539 MsG0580024131.01.T01:CDS
CACCGCTCACTCACTCACTC+AGG 0.599196 5:+1221278 MsG0580024131.01.T01:five_prime_UTR
ATGGTCGTGGGAGAATTGAC+TGG 0.601519 5:-1222567 None:intergenic
CCATTGGAATTCGAGCTGAT+GGG 0.601553 5:+1223635 MsG0580024131.01.T01:CDS
AGTTTGTACCTGTAATTCCA+AGG 0.609145 5:+1223662 MsG0580024131.01.T01:CDS
AATTCCAATGGCAAGAGGAG+TGG 0.613750 5:-1223623 None:intergenic
AAACAGCATCTCATGGTCGT+GGG 0.616728 5:-1222579 None:intergenic
TATCTCCAAACAGCATCTCA+TGG 0.617418 5:-1222586 None:intergenic
ATCCTTACGTGCTGGCATTG+TGG 0.619065 5:-1223689 None:intergenic
GTTTGTGGTGCAGCAATGGA+AGG 0.619096 5:+1223541 MsG0580024131.01.T01:CDS
TGGTCATGGTTGGTGTGCTG+AGG 0.620833 5:+1223978 MsG0580024131.01.T01:CDS
AAAGCTTCTCAAGAAACTAT+GGG 0.624225 5:+1222980 MsG0580024131.01.T01:CDS
AATGATGTGATACTTGTTGG+AGG 0.629718 5:+1223427 MsG0580024131.01.T01:CDS
TAGGACCTATGGTGCCACAA+TGG 0.630018 5:+1224008 MsG0580024131.01.T01:CDS
GTTTGAGGAGGTGAACAAAG+AGG 0.630045 5:+1223336 MsG0580024131.01.T01:CDS
TGGTTCCTGTTATGGAAGTG+AGG 0.631903 5:+1223938 MsG0580024131.01.T01:CDS
TATAAACCCTTTGGAAGGTG+CGG 0.634750 5:+1223519 MsG0580024131.01.T01:CDS
GATATGCAAGGTTGTTGACA+GGG 0.637845 5:+1223309 MsG0580024131.01.T01:CDS
GCATTGGCAGGAAGTACCAT+CGG 0.637875 5:+1223100 MsG0580024131.01.T01:CDS
ACTTCCATAACAGGAACCAC+AGG 0.638349 5:-1223934 None:intergenic
AGGATGCCAATGGTTGATGA+TGG 0.639984 5:+1223958 MsG0580024131.01.T01:CDS
GGATCCAGGCATCACAACAC+CGG 0.644727 5:-1223905 None:intergenic
ATACTTGTGTACGAAGGTGA+GGG 0.646011 5:+1223754 MsG0580024131.01.T01:CDS
AGGATGTTCTTATATCCCAA+GGG 0.646556 5:+1223447 MsG0580024131.01.T01:CDS
GCTCGAATTCCAATGGCAAG+AGG 0.649760 5:-1223628 None:intergenic
TGGTTGATGATGGTCATGGT+TGG 0.651359 5:+1223968 MsG0580024131.01.T01:CDS
CAAACGACCGATAAGAAATG+TGG 0.653357 5:+1222820 MsG0580024131.01.T01:CDS
TGACAGTGAAACAACTGGGG+AGG 0.653527 5:+1222373 MsG0580024131.01.T01:CDS
ACTCCACCAGAAACATTGCA+AGG 0.653765 5:-1222772 None:intergenic
GCCTGGATCCCGTATACCTG+TGG 0.656774 5:+1223918 MsG0580024131.01.T01:CDS
TCTAATTAATACAAACAACA+GGG 0.657712 5:-1221153 None:intergenic
CCAATGGTTGATGATGGTCA+TGG 0.660629 5:+1223964 MsG0580024131.01.T01:CDS
ATGTTCTTATATCCCAAGGG+TGG 0.662483 5:+1223450 MsG0580024131.01.T01:CDS
TGACAGGGCAGAGTTTGAGG+AGG 0.667171 5:+1223324 MsG0580024131.01.T01:CDS
TGACTGGTAACTCCTCCAGA+AGG 0.672347 5:-1222551 None:intergenic
GAGGGTAACCAAATCCATTG+TGG 0.675212 5:-1224022 None:intergenic
GATGCCTGAACCAACAGCAG+TGG 0.675835 5:+1222931 MsG0580024131.01.T01:CDS
CAGAGTTGATACTGACCCTG+TGG 0.678557 5:+1222637 MsG0580024131.01.T01:CDS
TATTCATGATAATCAAACTG+AGG 0.679559 5:+1223726 MsG0580024131.01.T01:CDS
GCTGTGACTGCTACCGCCGG+GGG 0.681642 5:+1223061 MsG0580024131.01.T01:CDS
TCAGATATACACAGACGCGG+TGG 0.684706 5:-1224185 None:intergenic
CACAATGTAGTGTTGCTGTG+TGG 0.686328 5:+1222447 MsG0580024131.01.T01:CDS
AGATGGTTTGAAGATATGCA+AGG 0.687926 5:+1223297 MsG0580024131.01.T01:CDS
TTGGCAGGAAGTACCATCGG+TGG 0.690515 5:+1223103 MsG0580024131.01.T01:CDS
AAATATATTCAAGCGTCACG+GGG 0.693490 5:+1223174 MsG0580024131.01.T01:CDS
AACCTGAGTGAGTGAGTGAG+CGG 0.716564 5:-1221280 None:intergenic
TGTGTGGAATGGCTCCGAAG+TGG 0.718800 5:+1222463 MsG0580024131.01.T01:CDS
TATGGAAGTGAGGATGCCAA+TGG 0.723950 5:+1223948 MsG0580024131.01.T01:CDS
ATCTGACAGTGAAACAACTG+GGG 0.741112 5:+1222370 MsG0580024131.01.T01:CDS
ACATCAGATATACACAGACG+CGG 0.771629 5:-1224188 None:intergenic
GCATTGATACTTGTGTACGA+AGG 0.792141 5:+1223748 MsG0580024131.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGTAACTTTTAAAATATA+GGG + Chr5:1221733-1221752 MsG0580024131.01.T01:intron 10.0%
!! AAAATAACAGAAGTTTATAA+AGG + Chr5:1223496-1223515 MsG0580024131.01.T01:CDS 15.0%
!! AGATAATAACTAAAACTAAA+TGG - Chr5:1221421-1221440 None:intergenic 15.0%
!! AGATTATAAGAAATTCAAAA+AGG - Chr5:1221822-1221841 None:intergenic 15.0%
!! TTTAAAAGTTACAATCAATT+TGG - Chr5:1221728-1221747 None:intergenic 15.0%
!!! GATTGTAACTTTTAAAATAT+AGG + Chr5:1221732-1221751 MsG0580024131.01.T01:intron 15.0%
!! AAATTTGACTATGTAATGTT+TGG - Chr5:1222049-1222068 None:intergenic 20.0%
!! ATGTTAATATTAAGCACTAT+TGG - Chr5:1222159-1222178 None:intergenic 20.0%
!! TCTAATTAATACAAACAACA+GGG - Chr5:1221156-1221175 None:intergenic 20.0%
!! TGAAAAGTTTAAAAGAGTTA+GGG + Chr5:1221795-1221814 MsG0580024131.01.T01:intron 20.0%
!! TTAGGATATTTCAAGATAAT+GGG + Chr5:1223802-1223821 MsG0580024131.01.T01:CDS 20.0%
!! TTCTAATTAATACAAACAAC+AGG - Chr5:1221157-1221176 None:intergenic 20.0%
!! TTGAAAAGTTTAAAAGAGTT+AGG + Chr5:1221794-1221813 MsG0580024131.01.T01:intron 20.0%
!! TTGAATTTCTTATAATCTCA+AGG + Chr5:1221824-1221843 MsG0580024131.01.T01:intron 20.0%
!!! AACCATTTTTAAAACATTCA+GGG - Chr5:1221608-1221627 None:intergenic 20.0%
!!! ATCAATTCTTCTTTTCATTA+TGG + Chr5:1221502-1221521 MsG0580024131.01.T01:intron 20.0%
!!! TTGAATATATTTTCAGAATC+TGG - Chr5:1223166-1223185 None:intergenic 20.0%
! ACAGTTGTTAAAACAATTAC+AGG - Chr5:1222007-1222026 None:intergenic 25.0%
! AGAGAGAAAACAAAAACAAA+CGG - Chr5:1221218-1221237 None:intergenic 25.0%
! ATAAATGATGTGATACTTGT+TGG + Chr5:1223424-1223443 MsG0580024131.01.T01:CDS 25.0%
! ATGTAAATCAACTTCTATTC+TGG - Chr5:1224108-1224127 None:intergenic 25.0%
! ATGTTACTGTGTATAATTTG+TGG + Chr5:1221930-1221949 MsG0580024131.01.T01:intron 25.0%
! CAAATTCAAACAATATGCTA+GGG + Chr5:1221664-1221683 MsG0580024131.01.T01:intron 25.0%
! GCTTTCTATATTAGATTGTT+CGG + Chr5:1222281-1222300 MsG0580024131.01.T01:intron 25.0%
! GGTCAAAGAAATTAAATCAA+TGG + Chr5:1223195-1223214 MsG0580024131.01.T01:CDS 25.0%
! GTTAGGATATTTCAAGATAA+TGG + Chr5:1223801-1223820 MsG0580024131.01.T01:CDS 25.0%
! TATTCATGATAATCAAACTG+AGG + Chr5:1223726-1223745 MsG0580024131.01.T01:CDS 25.0%
! TCAAATTCAAACAATATGCT+AGG + Chr5:1221663-1221682 MsG0580024131.01.T01:intron 25.0%
! TTTAAATCAACTTGCCTTAT+AGG + Chr5:1221443-1221462 MsG0580024131.01.T01:intron 25.0%
!! AATTGCTCTCATTTTCAATA+TGG + Chr5:1223018-1223037 MsG0580024131.01.T01:CDS 25.0%
!! ATTGCTCTCATTTTCAATAT+GGG + Chr5:1223019-1223038 MsG0580024131.01.T01:CDS 25.0%
!! TGTGTATAATTTGTGGTATT+TGG + Chr5:1221937-1221956 MsG0580024131.01.T01:intron 25.0%
!! TTATAAAGGTATAAACCCTT+TGG + Chr5:1223510-1223529 MsG0580024131.01.T01:CDS 25.0%
!!! AACTTCTGTTATTTTGCATA+AGG - Chr5:1223491-1223510 None:intergenic 25.0%
!!! CTCTTTTAAACTTTTCAAGT+TGG - Chr5:1221792-1221811 None:intergenic 25.0%
!!! GAACCATTTTTAAAACATTC+AGG - Chr5:1221609-1221628 None:intergenic 25.0%
!!! TGTTTTAACAACTGTGAAAA+TGG + Chr5:1222012-1222031 MsG0580024131.01.T01:intron 25.0%
AAAATATATTCAAGCGTCAC+GGG + Chr5:1223173-1223192 MsG0580024131.01.T01:CDS 30.0%
AAAGCTTCTCAAGAAACTAT+GGG + Chr5:1222980-1222999 MsG0580024131.01.T01:CDS 30.0%
AGTAGTTACAAACACCTATA+AGG - Chr5:1221460-1221479 None:intergenic 30.0%
ATAGCGATTGGAATTGATAT+TGG + Chr5:1222419-1222438 MsG0580024131.01.T01:CDS 30.0%
ATCAATTTATGCCTTCTTGA+GGG - Chr5:1224043-1224062 None:intergenic 30.0%
ATTTGGTCAGATATGTACTT+TGG + Chr5:1221954-1221973 MsG0580024131.01.T01:intron 30.0%
CATGTAAACATTGGATGATA+AGG - Chr5:1223381-1223400 None:intergenic 30.0%
GAAAATATATTCAAGCGTCA+CGG + Chr5:1223172-1223191 MsG0580024131.01.T01:CDS 30.0%
GAGAGAAAACAAAAACAAAC+GGG - Chr5:1221217-1221236 None:intergenic 30.0%
GCTCTTCAGATATAATTACA+TGG - Chr5:1222202-1222221 None:intergenic 30.0%
TATCAATTTATGCCTTCTTG+AGG - Chr5:1224044-1224063 None:intergenic 30.0%
TCTTGAAATATCCTAACAAG+TGG - Chr5:1223798-1223817 None:intergenic 30.0%
TTCAATATGAAACGCTTGAT+CGG + Chr5:1222614-1222633 MsG0580024131.01.T01:CDS 30.0%
TTTAACAACTGTGAAAATGG+AGG + Chr5:1222015-1222034 MsG0580024131.01.T01:intron 30.0%
! AAGTAAAAATCTGCCATTTC+TGG + Chr5:1222667-1222686 MsG0580024131.01.T01:CDS 30.0%
! CAATTTTTCCTGTTAAATGC+AGG + Chr5:1222315-1222334 MsG0580024131.01.T01:intron 30.0%
!! GATGATGGATCATAAACTTA+GGG + Chr5:1221695-1221714 MsG0580024131.01.T01:intron 30.0%
!! TGATGATGGATCATAAACTT+AGG + Chr5:1221694-1221713 MsG0580024131.01.T01:intron 30.0%
!!! GTCCCTGAATGTTTTAAAAA+TGG + Chr5:1221603-1221622 MsG0580024131.01.T01:intron 30.0%
AAATATATTCAAGCGTCACG+GGG + Chr5:1223174-1223193 MsG0580024131.01.T01:CDS 35.0%
AACAAGTCCAAGTTTCCAAA+GGG - Chr5:1223592-1223611 None:intergenic 35.0%
AGATGGTTTGAAGATATGCA+AGG + Chr5:1223297-1223316 MsG0580024131.01.T01:CDS 35.0%
AGGATGTTCTTATATCCCAA+GGG + Chr5:1223447-1223466 MsG0580024131.01.T01:CDS 35.0%
AGTTTGTACCTGTAATTCCA+AGG + Chr5:1223662-1223681 MsG0580024131.01.T01:CDS 35.0%
ATAATCCCTGACTTTGTAGA+GGG - Chr5:1221865-1221884 None:intergenic 35.0%
ATGATGCAAAGGTAGAAGTT+GGG + Chr5:1223398-1223417 MsG0580024131.01.T01:CDS 35.0%
CACAGGAAGACAACTAAAAT+AGG - Chr5:1224083-1224102 None:intergenic 35.0%
CATGCATGACACTTTCAATT+TGG + Chr5:1221581-1221600 MsG0580024131.01.T01:intron 35.0%
CCAATGTTTACATGATGCAA+AGG + Chr5:1223387-1223406 MsG0580024131.01.T01:CDS 35.0%
CCTTTGCATCATGTAAACAT+TGG - Chr5:1223390-1223409 None:intergenic 35.0%
CTAAAACTAAATGGCACTGT+TGG - Chr5:1221412-1221431 None:intergenic 35.0%
GAAAGCTTCTCAAGAAACTA+TGG + Chr5:1222979-1222998 MsG0580024131.01.T01:CDS 35.0%
GCTGCATGTAATTATATCTG+AGG + Chr5:1222220-1222239 MsG0580024131.01.T01:intron 35.0%
GGATCATAAACTTAGGGTTA+GGG + Chr5:1221701-1221720 MsG0580024131.01.T01:intron 35.0%
GTAAGCACCACATTTCTTAT+CGG - Chr5:1222830-1222849 None:intergenic 35.0%
TAACAAGTCCAAGTTTCCAA+AGG - Chr5:1223593-1223612 None:intergenic 35.0%
TACAAAGTCAGGGATTATGT+TGG + Chr5:1221867-1221886 MsG0580024131.01.T01:intron 35.0%
TGGATCATAAACTTAGGGTT+AGG + Chr5:1221700-1221719 MsG0580024131.01.T01:intron 35.0%
TTCACTAACGCAGCAATAAA+TGG - Chr5:1222719-1222738 None:intergenic 35.0%
! AAAGGTATAAACCCTTTGGA+AGG + Chr5:1223514-1223533 MsG0580024131.01.T01:CDS 35.0%
! AATGATGTGATACTTGTTGG+AGG + Chr5:1223427-1223446 MsG0580024131.01.T01:CDS 35.0%
! AGTATCCCAGATAAAAGCAT+TGG + Chr5:1223084-1223103 MsG0580024131.01.T01:CDS 35.0%
! ATCAACCTGAACACTGTTTT+GGG - Chr5:1223266-1223285 None:intergenic 35.0%
! GGGACTAAATTGATAGTAAG+TGG + Chr5:1221753-1221772 MsG0580024131.01.T01:intron 35.0%
! TCAATTCCAATCGCTATTTC+AGG - Chr5:1222416-1222435 None:intergenic 35.0%
! TTTTACTTGCATGAACCACA+GGG - Chr5:1222655-1222674 None:intergenic 35.0%
! TTTTCCTGTTAAATGCAGGA+TGG + Chr5:1222319-1222338 MsG0580024131.01.T01:intron 35.0%
! TTTTTACTTGCATGAACCAC+AGG - Chr5:1222656-1222675 None:intergenic 35.0%
!! AAAGTTGATGAATTGCATCC+TGG - Chr5:1223240-1223259 None:intergenic 35.0%
!! AAGTTGATGAATTGCATCCT+GGG - Chr5:1223239-1223258 None:intergenic 35.0%
!! GTTCAGGTTGATGTAGATTT+GGG + Chr5:1223274-1223293 MsG0580024131.01.T01:CDS 35.0%
!! GTTTTTCAAAAGCTCCACTT+CGG - Chr5:1222480-1222499 None:intergenic 35.0%
!! TGTTCAGGTTGATGTAGATT+TGG + Chr5:1223273-1223292 MsG0580024131.01.T01:CDS 35.0%
AAAAGTAGATCCTTACGTGC+TGG - Chr5:1223700-1223719 None:intergenic 40.0%
AAATGTGGTGCTTACTGTTC+CGG + Chr5:1222835-1222854 MsG0580024131.01.T01:CDS 40.0%
AACATTGCAAGGACTTCTTC+TGG - Chr5:1222764-1222783 None:intergenic 40.0%
AACTAAATGGCACTGTTGGT+TGG - Chr5:1221408-1221427 None:intergenic 40.0%
ACAAGAGTAGCAGAAGAAGA+AGG - Chr5:1221317-1221336 None:intergenic 40.0%
ACAGCAGTGGCGTTATTATA+TGG + Chr5:1222944-1222963 MsG0580024131.01.T01:CDS 40.0%
AGAAGTCCTTGCAATGTTTC+TGG + Chr5:1222766-1222785 MsG0580024131.01.T01:CDS 40.0%
AGATATGCAAGGTTGTTGAC+AGG + Chr5:1223308-1223327 MsG0580024131.01.T01:CDS 40.0%
ATACTTGTGTACGAAGGTGA+GGG + Chr5:1223754-1223773 MsG0580024131.01.T01:CDS 40.0%
ATCTGACAGTGAAACAACTG+GGG + Chr5:1222370-1222389 MsG0580024131.01.T01:CDS 40.0%
ATGTTCTTATATCCCAAGGG+TGG + Chr5:1223450-1223469 MsG0580024131.01.T01:CDS 40.0%
CAAACGACCGATAAGAAATG+TGG + Chr5:1222820-1222839 MsG0580024131.01.T01:CDS 40.0%
CATAATCCCTGACTTTGTAG+AGG - Chr5:1221866-1221885 None:intergenic 40.0%
CATCTGACAGTGAAACAACT+GGG + Chr5:1222369-1222388 MsG0580024131.01.T01:CDS 40.0%
CATGATGCAAAGGTAGAAGT+TGG + Chr5:1223397-1223416 MsG0580024131.01.T01:CDS 40.0%
CTTACAGTGCTCTGTTCATA+AGG + Chr5:1222097-1222116 MsG0580024131.01.T01:intron 40.0%
GAGGATGTTCTTATATCCCA+AGG + Chr5:1223446-1223465 MsG0580024131.01.T01:CDS 40.0%
GATATGCAAGGTTGTTGACA+GGG + Chr5:1223309-1223328 MsG0580024131.01.T01:CDS 40.0%
GCAGAAGAAAACCACTTGTT+AGG + Chr5:1223784-1223803 MsG0580024131.01.T01:CDS 40.0%
GCTAGGGACTAAATTGATGA+TGG + Chr5:1221680-1221699 MsG0580024131.01.T01:intron 40.0%
GTTGATGTAGATTTGGGAGA+TGG + Chr5:1223280-1223299 MsG0580024131.01.T01:CDS 40.0%
TAACAAGATTCTCCACCCTT+GGG - Chr5:1223465-1223484 None:intergenic 40.0%
TAACAGGAACCACAGGTATA+CGG - Chr5:1223930-1223949 None:intergenic 40.0%
TATAATAACGCCACTGCTGT+TGG - Chr5:1222944-1222963 None:intergenic 40.0%
TATACCTGTGGTTCCTGTTA+TGG + Chr5:1223930-1223949 MsG0580024131.01.T01:CDS 40.0%
TATCTCCAAACAGCATCTCA+TGG - Chr5:1222589-1222608 None:intergenic 40.0%
TGACATTTGATTGATGCAGC+AGG - Chr5:1221483-1221502 None:intergenic 40.0%
TGATGCAAAGGTAGAAGTTG+GGG + Chr5:1223399-1223418 MsG0580024131.01.T01:CDS 40.0%
TGGAAACGACTGAATGAAAC+CGG - Chr5:1222857-1222876 None:intergenic 40.0%
TGTTTCACTGTCAGATGCAA+CGG - Chr5:1222366-1222385 None:intergenic 40.0%
TTCAAAGATGAAGCTCCTTC+TGG + Chr5:1222536-1222555 MsG0580024131.01.T01:CDS 40.0%
! CATCAACCTGAACACTGTTT+TGG - Chr5:1223267-1223286 None:intergenic 40.0%
! CTCATTTTCAATATGGGTGC+TGG + Chr5:1223025-1223044 MsG0580024131.01.T01:CDS 40.0%
! CTGATTTCAGGAACTCCTTT+TGG - Chr5:1223841-1223860 None:intergenic 40.0%
! GCATTGATACTTGTGTACGA+AGG + Chr5:1223748-1223767 MsG0580024131.01.T01:CDS 40.0%
! TATAAACCCTTTGGAAGGTG+CGG + Chr5:1223519-1223538 MsG0580024131.01.T01:CDS 40.0%
! TCCTGCCAATGCTTTTATCT+GGG - Chr5:1223092-1223111 None:intergenic 40.0%
! TTCCTGCCAATGCTTTTATC+TGG - Chr5:1223093-1223112 None:intergenic 40.0%
!! CAACTTCTATTCTGGAACAC+AGG - Chr5:1224100-1224119 None:intergenic 40.0%
!! CTTATGAACAGAGCACTGTA+AGG - Chr5:1222099-1222118 None:intergenic 40.0%
!! TGTAGAGGGCATTCTCAAAT+AGG - Chr5:1221851-1221870 None:intergenic 40.0%
AAACAGCATCTCATGGTCGT+GGG - Chr5:1222582-1222601 None:intergenic 45.0%
AAAGATGAAGCTCCTTCTGG+AGG + Chr5:1222539-1222558 MsG0580024131.01.T01:CDS 45.0%
AACAGGAACCACAGGTATAC+GGG - Chr5:1223929-1223948 None:intergenic 45.0%
AACCAAATCTTCTCCACCGA+TGG - Chr5:1223119-1223138 None:intergenic 45.0%
AATTCCAATGGCAAGAGGAG+TGG - Chr5:1223626-1223645 None:intergenic 45.0%
ACTCCACCAGAAACATTGCA+AGG - Chr5:1222775-1222794 None:intergenic 45.0%
ACTTCCATAACAGGAACCAC+AGG - Chr5:1223937-1223956 None:intergenic 45.0%
AGAATGCCCTCTACAAAGTC+AGG + Chr5:1221856-1221875 MsG0580024131.01.T01:intron 45.0%
CAAATCCATTGTGGCACCAT+AGG - Chr5:1224016-1224035 None:intergenic 45.0%
CACAGCAACACTACATTGTG+AGG - Chr5:1222447-1222466 None:intergenic 45.0%
CCATGACCATCATCAACCAT+TGG - Chr5:1223967-1223986 None:intergenic 45.0%
CCATTGGAATTCGAGCTGAT+GGG + Chr5:1223635-1223654 MsG0580024131.01.T01:CDS 45.0%
CCTCTTCCTGAAATAGCGAT+TGG + Chr5:1222407-1222426 MsG0580024131.01.T01:CDS 45.0%
CTGCGTTAGTGAACAATGTC+TGG + Chr5:1222726-1222745 MsG0580024131.01.T01:CDS 45.0%
GAATGCCCTCTACAAAGTCA+GGG + Chr5:1221857-1221876 MsG0580024131.01.T01:intron 45.0%
GAGGGTAACCAAATCCATTG+TGG - Chr5:1224025-1224044 None:intergenic 45.0%
GATACTTGTGTACGAAGGTG+AGG + Chr5:1223753-1223772 MsG0580024131.01.T01:CDS 45.0%
GCATCTGACAGTGAAACAAC+TGG + Chr5:1222368-1222387 MsG0580024131.01.T01:CDS 45.0%
GGCACCATAGGTCCTATTTA+GGG - Chr5:1224004-1224023 None:intergenic 45.0%
GTAACAAGATTCTCCACCCT+TGG - Chr5:1223466-1223485 None:intergenic 45.0%
GTGGTGTTCCTTGGAATTAC+AGG - Chr5:1223673-1223692 None:intergenic 45.0%
GTTTGAGGAGGTGAACAAAG+AGG + Chr5:1223336-1223355 MsG0580024131.01.T01:CDS 45.0%
TACCATCGGTGGAGAAGATT+TGG + Chr5:1223114-1223133 MsG0580024131.01.T01:CDS 45.0%
TATGGAAGTGAGGATGCCAA+TGG + Chr5:1223948-1223967 MsG0580024131.01.T01:CDS 45.0%
TCAGATGCAACGGTATATGC+AGG - Chr5:1222356-1222375 None:intergenic 45.0%
TCCTGAAATCAGTGTGTGCA+TGG + Chr5:1223849-1223868 MsG0580024131.01.T01:CDS 45.0%
TCTCAAGAAACTATGGGCAG+TGG + Chr5:1222986-1223005 MsG0580024131.01.T01:CDS 45.0%
TCTGCCATCCTGCATTTAAC+AGG - Chr5:1222326-1222345 None:intergenic 45.0%
TGGCACCATAGGTCCTATTT+AGG - Chr5:1224005-1224024 None:intergenic 45.0%
TGGTTCCTGTTATGGAAGTG+AGG + Chr5:1223938-1223957 MsG0580024131.01.T01:CDS 45.0%
TTCCACCCAAAACAGTGTTC+AGG + Chr5:1223258-1223277 MsG0580024131.01.T01:CDS 45.0%
! CACAATGTAGTGTTGCTGTG+TGG + Chr5:1222447-1222466 MsG0580024131.01.T01:CDS 45.0%
! CAGTGATCCCTTTGGAAACT+TGG + Chr5:1223582-1223601 MsG0580024131.01.T01:CDS 45.0%
! CCAATCGCTATTTCAGGAAG+AGG - Chr5:1222410-1222429 None:intergenic 45.0%
! GGATTTGGTTACCCTCAAGA+AGG + Chr5:1224029-1224048 MsG0580024131.01.T01:CDS 45.0%
! TGTAGTGTTGCTGTGTGGAA+TGG + Chr5:1222452-1222471 MsG0580024131.01.T01:CDS 45.0%
!! AACCTGAACACTGTTTTGGG+TGG - Chr5:1223263-1223282 None:intergenic 45.0%
!! AGGATGCCAATGGTTGATGA+TGG + Chr5:1223958-1223977 MsG0580024131.01.T01:CDS 45.0%
!! AGTCCTTGCAATGTTTCTGG+TGG + Chr5:1222769-1222788 MsG0580024131.01.T01:CDS 45.0%
!! CCAATGGTTGATGATGGTCA+TGG + Chr5:1223964-1223983 MsG0580024131.01.T01:CDS 45.0%
!! CTATGGTGCCACAATGGATT+TGG + Chr5:1224014-1224033 MsG0580024131.01.T01:CDS 45.0%
!! TCCATGCACACACTGATTTC+AGG - Chr5:1223853-1223872 None:intergenic 45.0%
!! TCCCAGATAAAAGCATTGGC+AGG + Chr5:1223088-1223107 MsG0580024131.01.T01:CDS 45.0%
!! TGGTTGATGATGGTCATGGT+TGG + Chr5:1223968-1223987 MsG0580024131.01.T01:CDS 45.0%
!! TTTTATCTGGGATACTCCCC+CGG - Chr5:1223080-1223099 None:intergenic 45.0%
AACCTGAGTGAGTGAGTGAG+CGG - Chr5:1221283-1221302 None:intergenic 50.0%
ATGGTCGTGGGAGAATTGAC+TGG - Chr5:1222570-1222589 None:intergenic 50.0%
CAAACAGCATCTCATGGTCG+TGG - Chr5:1222583-1222602 None:intergenic 50.0%
CACAAACCGCACCTTCCAAA+GGG - Chr5:1223528-1223547 None:intergenic 50.0%
CACGACCATGAGATGCTGTT+TGG + Chr5:1222581-1222600 MsG0580024131.01.T01:CDS 50.0%
CCCATCAGCTCGAATTCCAA+TGG - Chr5:1223638-1223657 None:intergenic 50.0%
GAGGCCCTAAATAGGACCTA+TGG + Chr5:1223997-1224016 MsG0580024131.01.T01:CDS 50.0%
GCCATTGGAATTCGAGCTGA+TGG + Chr5:1223634-1223653 MsG0580024131.01.T01:CDS 50.0%
GCTCGAATTCCAATGGCAAG+AGG - Chr5:1223631-1223650 None:intergenic 50.0%
GGAATACCTGCAGCACCAAA+AGG + Chr5:1223823-1223842 MsG0580024131.01.T01:CDS 50.0%
GGCATCCTCACTTCCATAAC+AGG - Chr5:1223946-1223965 None:intergenic 50.0%
GTACGAAGGTGAGGGAAAGA+AGG + Chr5:1223762-1223781 MsG0580024131.01.T01:CDS 50.0%
GTTTGTGGTGCAGCAATGGA+AGG + Chr5:1223541-1223560 MsG0580024131.01.T01:CDS 50.0%
TCAGGCATCAGTGATCCCTT+TGG + Chr5:1223574-1223593 MsG0580024131.01.T01:CDS 50.0%
TCCAAGGTCTGCACCAGAAA+TGG - Chr5:1222683-1222702 None:intergenic 50.0%
TGACAGTGAAACAACTGGGG+AGG + Chr5:1222373-1222392 MsG0580024131.01.T01:CDS 50.0%
TGACTGGTAACTCCTCCAGA+AGG - Chr5:1222554-1222573 None:intergenic 50.0%
TGTTGACAGGGCAGAGTTTG+AGG + Chr5:1223321-1223340 MsG0580024131.01.T01:CDS 50.0%
! ATCCTTACGTGCTGGCATTG+TGG - Chr5:1223692-1223711 None:intergenic 50.0%
! ATGGAAGGAGCTGTTGCTTC+AGG + Chr5:1223556-1223575 MsG0580024131.01.T01:CDS 50.0%
! TCGCACAAGCACGCTCTAAA+CGG - Chr5:1222886-1222905 None:intergenic 50.0%
! TGCAAGGACTTCTTCTGGAG+TGG - Chr5:1222759-1222778 None:intergenic 50.0%
! TTTAGAGCGTGCTTGTGCGA+TGG + Chr5:1222886-1222905 MsG0580024131.01.T01:CDS 50.0%
!! AACGTGCTGCGAGTTTTAGC+CGG + Chr5:1223886-1223905 MsG0580024131.01.T01:CDS 50.0%
!! AAGGACTTCTTCTGGAGTGG+TGG - Chr5:1222756-1222775 None:intergenic 50.0%
!! ATTGCTTCGAGTTGCAACCC+AGG + Chr5:1223219-1223238 MsG0580024131.01.T01:CDS 50.0%
!! CAGAGTTGATACTGACCCTG+TGG + Chr5:1222637-1222656 MsG0580024131.01.T01:CDS 50.0%
!! GCATTGGCAGGAAGTACCAT+CGG + Chr5:1223100-1223119 MsG0580024131.01.T01:CDS 50.0%
!! TAGGACCTATGGTGCCACAA+TGG + Chr5:1224008-1224027 MsG0580024131.01.T01:CDS 50.0%
!! TGGCTGGTCTTCATGTTCTC+AGG + Chr5:1222906-1222925 MsG0580024131.01.T01:CDS 50.0%
ACCACAGGTATACGGGATCC+AGG - Chr5:1223922-1223941 None:intergenic 55.0%
CAAGCCACTCCTCTTGCCAT+TGG + Chr5:1223619-1223638 MsG0580024131.01.T01:CDS 55.0%
CACCACAATGCCAGCACGTA+AGG + Chr5:1223687-1223706 MsG0580024131.01.T01:CDS 55.0%
CCACAAACCGCACCTTCCAA+AGG - Chr5:1223529-1223548 None:intergenic 55.0%
CTGGTGCAGACCTTGGACAT+TGG + Chr5:1222686-1222705 MsG0580024131.01.T01:CDS 55.0%
GATGCCTGAACCAACAGCAG+TGG + Chr5:1222931-1222950 MsG0580024131.01.T01:CDS 55.0%
GCTGGCATTGTGGTGTTCCT+TGG - Chr5:1223682-1223701 None:intergenic 55.0%
GGATCCAGGCATCACAACAC+CGG - Chr5:1223908-1223927 None:intergenic 55.0%
GGTGTGCTGAGGCCCTAAAT+AGG + Chr5:1223989-1224008 MsG0580024131.01.T01:CDS 55.0%
TGACAGGGCAGAGTTTGAGG+AGG + Chr5:1223324-1223343 MsG0580024131.01.T01:CDS 55.0%
TGCGGTTTGTGGTGCAGCAA+TGG + Chr5:1223537-1223556 MsG0580024131.01.T01:CDS 55.0%
TGGACGAACGCCAATGTCCA+AGG - Chr5:1222699-1222718 None:intergenic 55.0%
TGTGTGGAATGGCTCCGAAG+TGG + Chr5:1222463-1222482 MsG0580024131.01.T01:CDS 55.0%
! CCTTTGGAAGGTGCGGTTTG+TGG + Chr5:1223526-1223545 MsG0580024131.01.T01:CDS 55.0%
! CGCACAAGCACGCTCTAAAC+GGG - Chr5:1222885-1222904 None:intergenic 55.0%
! TGGTCATGGTTGGTGTGCTG+AGG + Chr5:1223978-1223997 MsG0580024131.01.T01:CDS 55.0%
!! AACGCCACTGCTGTTGGTTC+AGG - Chr5:1222938-1222957 None:intergenic 55.0%
!! GCCATTTCTGGTGCAGACCT+TGG + Chr5:1222679-1222698 MsG0580024131.01.T01:CDS 55.0%
!! TTAGCCGGTGTTGTGATGCC+TGG + Chr5:1223901-1223920 MsG0580024131.01.T01:CDS 55.0%
!! TTGGCAGGAAGTACCATCGG+TGG + Chr5:1223103-1223122 MsG0580024131.01.T01:CDS 55.0%
!!! GGAACTCCTTTTGGTGCTGC+AGG - Chr5:1223832-1223851 None:intergenic 55.0%
CACCGCTCACTCACTCACTC+AGG + Chr5:1221278-1221297 MsG0580024131.01.T01:five_prime_UTR 60.0%
GCCTGGATCCCGTATACCTG+TGG + Chr5:1223918-1223937 MsG0580024131.01.T01:CDS 60.0%
GTTGCTGTGACTGCTACCGC+CGG + Chr5:1223058-1223077 MsG0580024131.01.T01:CDS 60.0%
TTGCTGTGACTGCTACCGCC+GGG + Chr5:1223059-1223078 MsG0580024131.01.T01:CDS 60.0%
! CACGCTCTAAACGGGTCAGC+TGG - Chr5:1222877-1222896 None:intergenic 60.0%
! TATCTGGGATACTCCCCCGG+CGG - Chr5:1223077-1223096 None:intergenic 60.0%
GAGCGTGCTTGTGCGATGGC+TGG + Chr5:1222890-1222909 MsG0580024131.01.T01:CDS 65.0%
TGCTGTGACTGCTACCGCCG+GGG + Chr5:1223060-1223079 MsG0580024131.01.T01:CDS 65.0%
GCTGTGACTGCTACCGCCGG+GGG + Chr5:1223061-1223080 MsG0580024131.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 1221126 1224198 1221126 ID=MsG0580024131.01;Name=MsG0580024131.01
Chr5 mRNA 1221126 1224198 1221126 ID=MsG0580024131.01.T01;Parent=MsG0580024131.01;Name=MsG0580024131.01.T01;_AED=0.29;_eAED=0.29;_QI=174|0|0.5|1|0|0.5|2|142|572
Chr5 exon 1221126 1221299 1221126 ID=MsG0580024131.01.T01:exon:23308;Parent=MsG0580024131.01.T01
Chr5 exon 1222338 1224198 1222338 ID=MsG0580024131.01.T01:exon:23309;Parent=MsG0580024131.01.T01
Chr5 five_prime_UTR 1221126 1221299 1221126 ID=MsG0580024131.01.T01:five_prime_utr;Parent=MsG0580024131.01.T01
Chr5 CDS 1222338 1224056 1222338 ID=MsG0580024131.01.T01:cds;Parent=MsG0580024131.01.T01
Chr5 three_prime_UTR 1224057 1224198 1224057 ID=MsG0580024131.01.T01:three_prime_utr;Parent=MsG0580024131.01.T01
Gene Sequence

>MsG0580024131.01.T01

ATGGCAGAACGAGAACCTGCATATACCGTTGCATCTGACAGTGAAACAACTGGGGAGGAAAAATCATCACCTCTTCCTGAAATAGCGATTGGAATTGATATTGGCACCTCACAATGTAGTGTTGCTGTGTGGAATGGCTCCGAAGTGGAGCTTTTGAAAAACAAAAGAAATCAGAAGCTTATGAAGTCATTTGTGACTTTCAAAGATGAAGCTCCTTCTGGAGGAGTTACCAGTCAATTCTCCCACGACCATGAGATGCTGTTTGGAGATACAATTTTCAATATGAAACGCTTGATCGGCAGAGTTGATACTGACCCTGTGGTTCATGCAAGTAAAAATCTGCCATTTCTGGTGCAGACCTTGGACATTGGCGTTCGTCCATTTATTGCTGCGTTAGTGAACAATGTCTGGAGATCCACCACTCCAGAAGAAGTCCTTGCAATGTTTCTGGTGGAGTTAAGACTGATGACTGAAACTCATCTCAAACGACCGATAAGAAATGTGGTGCTTACTGTTCCGGTTTCATTCAGTCGTTTCCAGCTGACCCGTTTAGAGCGTGCTTGTGCGATGGCTGGTCTTCATGTTCTCAGGTTGATGCCTGAACCAACAGCAGTGGCGTTATTATATGGACAGCAACAACAGAAAGCTTCTCAAGAAACTATGGGCAGTGGAAGTGAAAAAATTGCTCTCATTTTCAATATGGGTGCTGGTTATTGTGATGTTGCTGTGACTGCTACCGCCGGGGGAGTATCCCAGATAAAAGCATTGGCAGGAAGTACCATCGGTGGAGAAGATTTGGTTCAGAATATGATGTGTTATCTCTTACCAGATTCTGAAAATATATTCAAGCGTCACGGGGTCAAAGAAATTAAATCAATGGCATTGCTTCGAGTTGCAACCCAGGATGCAATTCATCAACTTTCCACCCAAAACAGTGTTCAGGTTGATGTAGATTTGGGAGATGGTTTGAAGATATGCAAGGTTGTTGACAGGGCAGAGTTTGAGGAGGTGAACAAAGAGGTGTTCGAAAAGTGTGAAAGCCTTATCATCCAATGTTTACATGATGCAAAGGTAGAAGTTGGGGATATAAATGATGTGATACTTGTTGGAGGATGTTCTTATATCCCAAGGGTGGAGAATCTTGTTACAACCTTATGCAAAATAACAGAAGTTTATAAAGGTATAAACCCTTTGGAAGGTGCGGTTTGTGGTGCAGCAATGGAAGGAGCTGTTGCTTCAGGCATCAGTGATCCCTTTGGAAACTTGGACTTGTTAACGATTCAAGCCACTCCTCTTGCCATTGGAATTCGAGCTGATGGGAACAAGTTTGTACCTGTAATTCCAAGGAACACCACAATGCCAGCACGTAAGGATCTACTTTTCACAACTATTCATGATAATCAAACTGAGGCATTGATACTTGTGTACGAAGGTGAGGGAAAGAAGGCAGAAGAAAACCACTTGTTAGGATATTTCAAGATAATGGGAATACCTGCAGCACCAAAAGGAGTTCCTGAAATCAGTGTGTGCATGGACATAGATGCTGCAAACGTGCTGCGAGTTTTAGCCGGTGTTGTGATGCCTGGATCCCGTATACCTGTGGTTCCTGTTATGGAAGTGAGGATGCCAATGGTTGATGATGGTCATGGTTGGTGTGCTGAGGCCCTAAATAGGACCTATGGTGCCACAATGGATTTGGTTACCCTCAAGAAGGCATAA
Protein sequence

>MsG0580024131.01.T01

MAEREPAYTVASDSETTGEEKSSPLPEIAIGIDIGTSQCSVAVWNGSEVELLKNKRNQKLMKSFVTFKDEAPSGGVTSQFSHDHEMLFGDTIFNMKRLIGRVDTDPVVHASKNLPFLVQTLDIGVRPFIAALVNNVWRSTTPEEVLAMFLVELRLMTETHLKRPIRNVVLTVPVSFSRFQLTRLERACAMAGLHVLRLMPEPTAVALLYGQQQQKASQETMGSGSEKIALIFNMGAGYCDVAVTATAGGVSQIKALAGSTIGGEDLVQNMMCYLLPDSENIFKRHGVKEIKSMALLRVATQDAIHQLSTQNSVQVDVDLGDGLKICKVVDRAEFEEVNKEVFEKCESLIIQCLHDAKVEVGDINDVILVGGCSYIPRVENLVTTLCKITEVYKGINPLEGAVCGAAMEGAVASGISDPFGNLDLLTIQATPLAIGIRADGNKFVPVIPRNTTMPARKDLLFTTIHDNQTEALILVYEGEGKKAEENHLLGYFKIMGIPAAPKGVPEISVCMDIDAANVLRVLAGVVMPGSRIPVVPVMEVRMPMVDDGHGWCAEALNRTYGATMDLVTLKKA*