AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024486.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 37 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGTATCTACCAGGTGAAAT+AGG 0.231812 5:-5491911 None:intergenic
ACGTATCTACCAGGTGAAAT+AGG 0.231812 5:-5493728 None:intergenic
CTAAACAAAGCAACCGTAAC+CGG 0.330991 5:+5491968 MsG0580024486.01.T01:CDS
CGTATCTACCAGGTGAAATA+GGG 0.338708 5:-5491910 None:intergenic
CGTATCTACCAGGTGAAATA+GGG 0.338708 5:-5493727 None:intergenic
CTAAACAAAGCAACCATAAC+CGG 0.352065 5:+5493785 MsG0580024486.01.T01:CDS
TGATGTTCCTGACAATGATT+TGG 0.352192 5:+5492045 MsG0580024486.01.T01:CDS
TCACCGCAATGCAAATTTCT+AGG 0.363680 5:-5491944 None:intergenic
TAGAAACATGAAATGCAAAT+AGG 0.365791 5:+5489887 None:intergenic
CGGTTATGGTTGCTTTGTTT+AGG 0.374844 5:-5493784 None:intergenic
CGGTTACGGTTGCTTTGTTT+AGG 0.378746 5:-5491967 None:intergenic
ATTCTCATATGACCCGGTTA+TGG 0.391651 5:-5493798 None:intergenic
TCACTGCAATTCAAATTTCC+AGG 0.402896 5:-5493761 None:intergenic
TGACGTTCCTGACAATGAAT+TGG 0.410222 5:+5493862 MsG0580024486.01.T01:CDS
AACTTACCCAATTCATTGTC+AGG 0.420608 5:-5493869 None:intergenic
ATTCTCATTTGACCCGGTTA+CGG 0.436888 5:-5491981 None:intergenic
CTTTCTTGTCACATTTCTGT+TGG 0.471125 5:-5491882 None:intergenic
CTTTCTTGTCACATTTCTGT+TGG 0.471125 5:-5493699 None:intergenic
AACTTACCCAAATCATTGTC+AGG 0.477052 5:-5492052 None:intergenic
TATCTAGAGTGTGACGAGAA+TGG 0.480614 5:+5492013 MsG0580024486.01.T01:CDS
TATCTAGAGTGTGACGAGAA+TGG 0.480614 5:+5493830 MsG0580024486.01.T01:CDS
GATGTTCCTGACAATGATTT+GGG 0.487007 5:+5492046 MsG0580024486.01.T01:CDS
GACGTTCCTGACAATGAATT+GGG 0.527489 5:+5493863 MsG0580024486.01.T01:CDS
CGCTTTAGAACGTATCTACC+AGG 0.543633 5:-5491920 None:intergenic
CGCTTTAGAACGTATCTACC+AGG 0.543633 5:-5493737 None:intergenic
TAAACAAAGCAACCGTAACC+GGG 0.576188 5:+5491969 MsG0580024486.01.T01:CDS
AGATACGTTCTAAAGCGTCC+TGG 0.577653 5:+5493743 MsG0580024486.01.T01:CDS
GTTGGTAAATTGTGATAAGT+CGG 0.595561 5:-5493681 None:intergenic
AAGCTTACCCCTATTTCACC+TGG 0.596386 5:+5491902 MsG0580024486.01.T01:CDS
AAGCTTACCCCTATTTCACC+TGG 0.596386 5:+5493719 MsG0580024486.01.T01:CDS
GCTTTGATTCTCATTTGACC+CGG 0.611038 5:-5491987 None:intergenic
GCTTTGATTCTCATATGACC+CGG 0.611038 5:-5493804 None:intergenic
TAAACAAAGCAACCATAACC+GGG 0.619210 5:+5493786 MsG0580024486.01.T01:CDS
GTATCTACCAGGTGAAATAG+GGG 0.633139 5:-5491909 None:intergenic
GTATCTACCAGGTGAAATAG+GGG 0.633139 5:-5493726 None:intergenic
GTTGGTAAATTGTGACAAGT+CGG 0.651629 5:-5491864 None:intergenic
CGTCCTAGAAATTTGCATTG+CGG 0.664275 5:+5491941 MsG0580024486.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAAAACAAAAATAATAT+AGG - Chr5:5492183-5492202 None:intergenic 10.0%
!! AACAAAACAAAAATAATATA+GGG - Chr5:5492182-5492201 None:intergenic 10.0%
!! CATAAAAATATATATATTTC+TGG - Chr5:5492566-5492585 None:intergenic 10.0%
!!! TAATATGTTTTATTAAATTG+AGG + Chr5:5490822-5490841 MsG0580024486.01.T01:intron 10.0%
!! AGAAAAAACATAACATATTT+GGG - Chr5:5491538-5491557 None:intergenic 15.0%
!! AGATAAAACATAACATATTT+GGG - Chr5:5492364-5492383 None:intergenic 15.0%
!! ATATTGTTTCATTAAAAAAG+TGG - Chr5:5490587-5490606 None:intergenic 15.0%
!! GCAACAATTAAAATAAATTA+TGG + Chr5:5492145-5492164 MsG0580024486.01.T01:intron 15.0%
!! TGACTTATCATAAATTAAAT+TGG - Chr5:5490784-5490803 None:intergenic 15.0%
!!! AATAATACCAAATACAATTT+TGG + Chr5:5490445-5490464 MsG0580024486.01.T01:intron 15.0%
!!! TTTAATTGTTGCAATTATTT+TGG - Chr5:5492137-5492156 None:intergenic 15.0%
!! AAAATATCGTTAAAGACATT+TGG + Chr5:5492632-5492651 MsG0580024486.01.T01:intron 20.0%
!! AAATGAGTTAGATAAAACAT+AGG - Chr5:5493438-5493457 None:intergenic 20.0%
!! AAGATAGTTATTTAGAGAAT+GGG + Chr5:5491099-5491118 MsG0580024486.01.T01:intron 20.0%
!! ACTACAATAACAACAAAAAA+CGG - Chr5:5492091-5492110 None:intergenic 20.0%
!! AGAATTTCCATTAAAATTGA+AGG + Chr5:5491581-5491600 MsG0580024486.01.T01:intron 20.0%
!! ATGAAACACATTCAATAATA+AGG + Chr5:5490417-5490436 MsG0580024486.01.T01:intron 20.0%
!! GAAAAAACATAACATATTTG+GGG - Chr5:5491537-5491556 None:intergenic 20.0%
!! GAAAAATATCCATATATAGT+AGG - Chr5:5490324-5490343 None:intergenic 20.0%
!! GAGAAAAAACATAACATATT+TGG - Chr5:5491539-5491558 None:intergenic 20.0%
!! GAGATAAAACATAACATATT+TGG - Chr5:5492365-5492384 None:intergenic 20.0%
!! TAATTTAGCAGAATATGAAT+TGG + Chr5:5491637-5491656 MsG0580024486.01.T01:intron 20.0%
!! TATTATATTTCCTATATGAG+AGG + Chr5:5492111-5492130 MsG0580024486.01.T01:intron 20.0%
!! TATTTGGGAAACATTTAAAA+CGG - Chr5:5492349-5492368 None:intergenic 20.0%
!! TCTCAAATCAAACATAAAAT+CGG - Chr5:5491806-5491825 None:intergenic 20.0%
!! TGAAAATATGACGATTATTA+TGG + Chr5:5490354-5490373 MsG0580024486.01.T01:intron 20.0%
!! TTAAAGTAGCAATAATTGAA+CGG + Chr5:5493403-5493422 MsG0580024486.01.T01:intron 20.0%
!! TTATTGGAAAACAAAAATTG+TGG + Chr5:5492933-5492952 MsG0580024486.01.T01:intron 20.0%
!! TTGAATATGTTACAATTGAA+AGG + Chr5:5491433-5491452 MsG0580024486.01.T01:intron 20.0%
!! TTTCCATTAAAATTGAAGAT+TGG + Chr5:5492411-5492430 MsG0580024486.01.T01:intron 20.0%
!!! AATATCAAATAGTACAGTTT+TGG + Chr5:5490162-5490181 MsG0580024486.01.T01:intron 20.0%
!!! ATCTTCTATCTTTTAAGATT+TGG - Chr5:5491084-5491103 None:intergenic 20.0%
!!! TATGTTTTATCTAACTCATT+TGG + Chr5:5493437-5493456 MsG0580024486.01.T01:intron 20.0%
!!! TCAATAACAGATTTAACTTT+GGG + Chr5:5493083-5493102 MsG0580024486.01.T01:intron 20.0%
!!! TTCAATAACAGATTTAACTT+TGG + Chr5:5493082-5493101 MsG0580024486.01.T01:intron 20.0%
!!! TTCAATTTTAATGGAAATTC+TGG - Chr5:5491582-5491601 None:intergenic 20.0%
!!! TTTTATTAAATTGAGGCATT+CGG + Chr5:5490829-5490848 MsG0580024486.01.T01:intron 20.0%
!!! TTTTTGTTTTCCAATAACAA+AGG - Chr5:5492930-5492949 None:intergenic 20.0%
! AAAAACTGAAAGAAAAGTAG+AGG - Chr5:5490896-5490915 None:intergenic 25.0%
! ACACTGTTATTAATTATGCA+CGG - Chr5:5493142-5493161 None:intergenic 25.0%
! ACCTAAACCAAAATTGTATT+TGG - Chr5:5490455-5490474 None:intergenic 25.0%
! ATAATTAACACGTCTAGTTA+TGG - Chr5:5493032-5493051 None:intergenic 25.0%
! ATATAATAGTCCCTAATCTT+AGG - Chr5:5493380-5493399 None:intergenic 25.0%
! ATGTCCAAATGATTAATGAA+CGG + Chr5:5490243-5490262 MsG0580024486.01.T01:intron 25.0%
! ATTGAGTACAACTCTATAAT+AGG + Chr5:5490381-5490400 MsG0580024486.01.T01:intron 25.0%
! CTATAACAACCATAATTGAA+CGG + Chr5:5492515-5492534 MsG0580024486.01.T01:intron 25.0%
! GAAGATAGTTATTTAGAGAA+TGG + Chr5:5491098-5491117 MsG0580024486.01.T01:intron 25.0%
! GTAATACTTGAAAACAGAAA+AGG - Chr5:5492544-5492563 None:intergenic 25.0%
! TCACAGATTATTATTACAGA+GGG - Chr5:5492291-5492310 None:intergenic 25.0%
! TTGAGTACAACTCTATAATA+GGG + Chr5:5490382-5490401 MsG0580024486.01.T01:intron 25.0%
!! AAGCCAATCTTCAATTTTAA+TGG - Chr5:5492417-5492436 None:intergenic 25.0%
!! AAGCTAACCTTCAATTTTAA+TGG - Chr5:5491591-5491610 None:intergenic 25.0%
!! ATATCAATCTTTTCTGCATT+TGG + Chr5:5491767-5491786 MsG0580024486.01.T01:intron 25.0%
!! GATTTGGAATGAATAATACT+TGG - Chr5:5491068-5491087 None:intergenic 25.0%
!!! AAATAGTACAGTTTTGGTTT+AGG + Chr5:5490168-5490187 MsG0580024486.01.T01:intron 25.0%
!!! AATTTTAATGGAAATTCTGG+TGG - Chr5:5491579-5491598 None:intergenic 25.0%
!!! ACCAAATACAATTTTGGTTT+AGG + Chr5:5490451-5490470 MsG0580024486.01.T01:intron 25.0%
!!! TTTTGTTTGTTCCATTAAGA+TGG - Chr5:5490220-5490239 None:intergenic 25.0%
AAAAAGTGGAAGTAAGATGA+AGG - Chr5:5490573-5490592 None:intergenic 30.0%
AAAATGTGTACGATGAAGAA+AGG - Chr5:5490708-5490727 None:intergenic 30.0%
ACACTGTTATTACTACATCA+CGG - Chr5:5492802-5492821 None:intergenic 30.0%
ACTTATTGATGAGAGAACAA+TGG + Chr5:5491336-5491355 MsG0580024486.01.T01:intron 30.0%
ATGAATTGGAACTGTAATGA+CGG + Chr5:5491651-5491670 MsG0580024486.01.T01:intron 30.0%
ATTAATGAACGGTATGAAGT+AGG + Chr5:5490254-5490273 MsG0580024486.01.T01:intron 30.0%
CAATAAGATAGATTGAAGGA+AGG - Chr5:5490953-5490972 None:intergenic 30.0%
CACTGTTATTAATTATGCAC+GGG - Chr5:5493141-5493160 None:intergenic 30.0%
CATACCGTTCATTAATCATT+TGG - Chr5:5490250-5490269 None:intergenic 30.0%
CCATTAGTAATATCAGACAA+TGG - Chr5:5493563-5493582 None:intergenic 30.0%
CCATTGTCTGATATTACTAA+TGG + Chr5:5493560-5493579 MsG0580024486.01.T01:intron 30.0%
CGTTCAATTATGGTTGTTAT+AGG - Chr5:5492517-5492536 None:intergenic 30.0%
GATAAATGACACCATCTTAA+TGG + Chr5:5490206-5490225 MsG0580024486.01.T01:intron 30.0%
GCAAGTATCAAAAATCAAGA+CGG - Chr5:5492491-5492510 None:intergenic 30.0%
GTCACAGATTATTATTACAG+AGG - Chr5:5492292-5492311 None:intergenic 30.0%
TGAGCAATAAGATAGATTGA+AGG - Chr5:5490957-5490976 None:intergenic 30.0%
TGTTCGTTATATACATCCTT+GGG + Chr5:5492659-5492678 MsG0580024486.01.T01:intron 30.0%
TTAATGAACGGTATGAAGTA+GGG + Chr5:5490255-5490274 MsG0580024486.01.T01:intron 30.0%
TTCATGTAGAAACACTTAGA+CGG + Chr5:5491479-5491498 MsG0580024486.01.T01:intron 30.0%
TTTCTCATGCAATGATTTGA+TGG - Chr5:5491401-5491420 None:intergenic 30.0%
! ACAAAAAGCATAGTATGAGT+AGG + Chr5:5492234-5492253 MsG0580024486.01.T01:intron 30.0%
! ATGAAGTAGGGTAATGTTTT+AGG + Chr5:5490267-5490286 MsG0580024486.01.T01:intron 30.0%
! CGACTTTTCAGTTTATTGTT+TGG - Chr5:5493315-5493334 None:intergenic 30.0%
! GTTGGTAAATTGTGATAAGT+CGG - Chr5:5493684-5493703 None:intergenic 30.0%
!! AAGTCTTTTGAGTAGAACAA+AGG + Chr5:5490920-5490939 MsG0580024486.01.T01:intron 30.0%
!! AATTGAAGATTGGCTTCAAA+CGG + Chr5:5492421-5492440 MsG0580024486.01.T01:intron 30.0%
!! AATTGAAGGTTAGCTTCAAA+CGG + Chr5:5491595-5491614 MsG0580024486.01.T01:intron 30.0%
!! GGATGTAATGGGTATTATTA+AGG - Chr5:5489975-5489994 None:intergenic 30.0%
!!! ACACATTTTTTCTCACTCAT+TGG + Chr5:5490719-5490738 MsG0580024486.01.T01:intron 30.0%
!!! ATTATTTTGGCCTCTCATAT+AGG - Chr5:5492124-5492143 None:intergenic 30.0%
AAAAGGTCTCCGTTCAATTA+TGG - Chr5:5492527-5492546 None:intergenic 35.0%
AACTATTGAGAGGTTGAACT+TGG + Chr5:5492740-5492759 MsG0580024486.01.T01:intron 35.0%
AACTTACCCAAATCATTGTC+AGG - Chr5:5492055-5492074 None:intergenic 35.0%
AACTTACCCAATTCATTGTC+AGG - Chr5:5493872-5493891 None:intergenic 35.0%
ACTATTGAGAGGTTGAACTT+GGG + Chr5:5492741-5492760 MsG0580024486.01.T01:intron 35.0%
ACTTCTCTGAACATTCTCAT+TGG + Chr5:5493351-5493370 MsG0580024486.01.T01:intron 35.0%
AGGCAATTCATGTGACATTT+AGG + Chr5:5490038-5490057 MsG0580024486.01.T01:intron 35.0%
CACACAAATGTCGTCATTTA+CGG + Chr5:5493243-5493262 MsG0580024486.01.T01:intron 35.0%
CACTGTTATTACTACATCAC+GGG - Chr5:5492801-5492820 None:intergenic 35.0%
CCAATGCATTAACTATTGAG+AGG + Chr5:5492730-5492749 MsG0580024486.01.T01:intron 35.0%
CCATATATAGTAGGCATACA+CGG - Chr5:5490315-5490334 None:intergenic 35.0%
CCCAAAAAAACGGATGTAAT+GGG - Chr5:5489986-5490005 None:intergenic 35.0%
CCTCTCAATAGTTAATGCAT+TGG - Chr5:5492733-5492752 None:intergenic 35.0%
CTAAACAAAGCAACCATAAC+CGG + Chr5:5493785-5493804 MsG0580024486.01.T01:CDS 35.0%
CTGTTCGTTATATACATCCT+TGG + Chr5:5492658-5492677 MsG0580024486.01.T01:intron 35.0%
CTTACTCTAGCCCAAAAAAA+CGG - Chr5:5489996-5490015 None:intergenic 35.0%
CTTTCTTGTCACATTTCTGT+TGG - Chr5:5491885-5491904 None:intergenic 35.0%
GAGACACGATAATCAATTCA+CGG - Chr5:5493166-5493185 None:intergenic 35.0%
GATAGAACCAAATGCAGAAA+AGG - Chr5:5491777-5491796 None:intergenic 35.0%
GATGTTCCTGACAATGATTT+GGG + Chr5:5492046-5492065 MsG0580024486.01.T01:CDS 35.0%
TAAACAAAGCAACCATAACC+GGG + Chr5:5493786-5493805 MsG0580024486.01.T01:CDS 35.0%
TAATTATGCACGGGATACAA+AGG - Chr5:5493132-5493151 None:intergenic 35.0%
TCACTGCAATTCAAATTTCC+AGG - Chr5:5493764-5493783 None:intergenic 35.0%
TGATGTTCCTGACAATGATT+TGG + Chr5:5492045-5492064 MsG0580024486.01.T01:CDS 35.0%
! ACTCATACCTTTTCTGCATT+TGG + Chr5:5493584-5493603 MsG0580024486.01.T01:intron 35.0%
! GGTCGTTTAACCTTTGTTAT+TGG + Chr5:5492917-5492936 MsG0580024486.01.T01:intron 35.0%
! GTTGGTAAATTGTGACAAGT+CGG - Chr5:5491867-5491886 None:intergenic 35.0%
! TTCATGATTTTTACCCCTTC+AGG - Chr5:5491150-5491169 None:intergenic 35.0%
!! GTCTGTTCGTTGATAATTGT+TGG + Chr5:5492851-5492870 MsG0580024486.01.T01:intron 35.0%
!! TCAGTTTATTGTTTGGCTCT+AGG - Chr5:5493308-5493327 None:intergenic 35.0%
!!! ACCCATTACATCCGTTTTTT+TGG + Chr5:5489982-5490001 MsG0580024486.01.T01:intron 35.0%
!!! CCCATTACATCCGTTTTTTT+GGG + Chr5:5489983-5490002 MsG0580024486.01.T01:intron 35.0%
AACTGATGTAACTGCCTGAA+GGG + Chr5:5491133-5491152 MsG0580024486.01.T01:intron 40.0%
AAGTAAGATGAAGGAGGAGA+GGG - Chr5:5490564-5490583 None:intergenic 40.0%
AAGTGGAAGTAAGATGAAGG+AGG - Chr5:5490570-5490589 None:intergenic 40.0%
ACGAACAGACGCACATAATA+TGG - Chr5:5492841-5492860 None:intergenic 40.0%
ACGTATCTACCAGGTGAAAT+AGG - Chr5:5491914-5491933 None:intergenic 40.0%
ATACATCCTTGGGTGATGTT+TGG + Chr5:5492669-5492688 MsG0580024486.01.T01:intron 40.0%
ATGAACTCTACGCTTCTTGT+TGG - Chr5:5493528-5493547 None:intergenic 40.0%
ATTCTCATATGACCCGGTTA+TGG - Chr5:5493801-5493820 None:intergenic 40.0%
ATTCTCATTTGACCCGGTTA+CGG - Chr5:5491984-5492003 None:intergenic 40.0%
CAGTCTGTTCATATGTTGCT+TGG - Chr5:5493004-5493023 None:intergenic 40.0%
CCGTGTATGCCTACTATATA+TGG + Chr5:5490312-5490331 MsG0580024486.01.T01:intron 40.0%
CGTATCTACCAGGTGAAATA+GGG - Chr5:5491913-5491932 None:intergenic 40.0%
CGTCCTAGAAATTTGCATTG+CGG + Chr5:5491941-5491960 MsG0580024486.01.T01:CDS 40.0%
CTAAACAAAGCAACCGTAAC+CGG + Chr5:5491968-5491987 MsG0580024486.01.T01:CDS 40.0%
CTATTGAGAGGTTGAACTTG+GGG + Chr5:5492742-5492761 MsG0580024486.01.T01:intron 40.0%
GAACAATGGACACTTTCCTA+AGG + Chr5:5491350-5491369 MsG0580024486.01.T01:intron 40.0%
GACGTTCCTGACAATGAATT+GGG + Chr5:5493863-5493882 MsG0580024486.01.T01:CDS 40.0%
GCCCAAAAAAACGGATGTAA+TGG - Chr5:5489987-5490006 None:intergenic 40.0%
GCTTTGATTCTCATATGACC+CGG - Chr5:5493807-5493826 None:intergenic 40.0%
GCTTTGATTCTCATTTGACC+CGG - Chr5:5491990-5492009 None:intergenic 40.0%
GGTGGTATATAGCAGAAGTT+TGG - Chr5:5491561-5491580 None:intergenic 40.0%
GTATCTACCAGGTGAAATAG+GGG - Chr5:5491912-5491931 None:intergenic 40.0%
GTCTCTTCATTAAACCGTGT+TGG + Chr5:5493181-5493200 MsG0580024486.01.T01:intron 40.0%
GTTATTACTACATCACGGGA+TGG - Chr5:5492797-5492816 None:intergenic 40.0%
TAAACAAAGCAACCGTAACC+GGG + Chr5:5491969-5491988 MsG0580024486.01.T01:CDS 40.0%
TCACCGCAATGCAAATTTCT+AGG - Chr5:5491947-5491966 None:intergenic 40.0%
TCATTGGCAGCCTAAGATTA+GGG + Chr5:5493367-5493386 MsG0580024486.01.T01:intron 40.0%
TCATTGTCAGAGAGCAACAT+TGG - Chr5:5491287-5491306 None:intergenic 40.0%
TCTGTTCACACGTTAGTAGA+TGG + Chr5:5492896-5492915 MsG0580024486.01.T01:intron 40.0%
TGAACTCTACGCTTCTTGTT+GGG - Chr5:5493527-5493546 None:intergenic 40.0%
TGACGTTCCTGACAATGAAT+TGG + Chr5:5493862-5493881 MsG0580024486.01.T01:CDS 40.0%
TGTCACATGAATTGCCTTCA+AGG - Chr5:5490035-5490054 None:intergenic 40.0%
! AACAAGAAGCGTAGAGTTCA+TGG + Chr5:5493527-5493546 MsG0580024486.01.T01:intron 40.0%
! TATCTAGAGTGTGACGAGAA+TGG + Chr5:5492013-5492032 MsG0580024486.01.T01:CDS 40.0%
!! CGGTTATGGTTGCTTTGTTT+AGG - Chr5:5493787-5493806 None:intergenic 40.0%
AAGCTTACCCCTATTTCACC+TGG + Chr5:5491902-5491921 MsG0580024486.01.T01:CDS 45.0%
ACTGATGTAACTGCCTGAAG+GGG + Chr5:5491134-5491153 MsG0580024486.01.T01:intron 45.0%
CACATGGTACAAAGCCAACA+CGG - Chr5:5493198-5493217 None:intergenic 45.0%
CTCATTGGCAGCCTAAGATT+AGG + Chr5:5493366-5493385 MsG0580024486.01.T01:intron 45.0%
CTTTGTACCATGTGCACTCA+TGG + Chr5:5493204-5493223 MsG0580024486.01.T01:intron 45.0%
GAACTCTACGCTTCTTGTTG+GGG - Chr5:5493526-5493545 None:intergenic 45.0%
GAACTGATGTAACTGCCTGA+AGG + Chr5:5491132-5491151 MsG0580024486.01.T01:intron 45.0%
GAAGTAAGATGAAGGAGGAG+AGG - Chr5:5490565-5490584 None:intergenic 45.0%
GACGTAGAGTTCTGTCAAAC+TGG + Chr5:5490534-5490553 MsG0580024486.01.T01:intron 45.0%
GGGCTAGAGTAAGTTTCGTT+TGG + Chr5:5490003-5490022 MsG0580024486.01.T01:intron 45.0%
TCAATAAGACCATTCGAGCG+AGG - Chr5:5491506-5491525 None:intergenic 45.0%
TCGTTTGGTTGAAGCCTTGA+AGG + Chr5:5490018-5490037 MsG0580024486.01.T01:intron 45.0%
TGATCACCAAACATCACCCA+AGG - Chr5:5492678-5492697 None:intergenic 45.0%
TTGCGATCATCAGCTACCTT+AGG - Chr5:5491369-5491388 None:intergenic 45.0%
! GTGATGTTTGGTGATCACGA+GGG + Chr5:5492681-5492700 MsG0580024486.01.T01:intron 45.0%
!! AGATACGTTCTAAAGCGTCC+TGG + Chr5:5491926-5491945 MsG0580024486.01.T01:CDS 45.0%
!! CGCTTTAGAACGTATCTACC+AGG - Chr5:5491923-5491942 None:intergenic 45.0%
!! CGGTTACGGTTGCTTTGTTT+AGG - Chr5:5491970-5491989 None:intergenic 45.0%
!!! CGTGACGTCGTTAGTTTTGA+TGG - Chr5:5492607-5492626 None:intergenic 45.0%
!!! AAATATATATATTTTTATGT+TGG + Chr5:5492567-5492586 MsG0580024486.01.T01:intron 5.0%
ACGGGATACAAAGGCAGCAT+GGG - Chr5:5493123-5493142 None:intergenic 50.0%
ACTGCTACCATGAGTGCACA+TGG - Chr5:5493214-5493233 None:intergenic 50.0%
ATTTACGGCGCTCAGGATGT+GGG + Chr5:5493258-5493277 MsG0580024486.01.T01:intron 50.0%
! GGTGATGTTTGGTGATCACG+AGG + Chr5:5492680-5492699 MsG0580024486.01.T01:intron 50.0%
CACGGGATACAAAGGCAGCA+TGG - Chr5:5493124-5493143 None:intergenic 55.0%
CATTTACGGCGCTCAGGATG+TGG + Chr5:5493257-5493276 MsG0580024486.01.T01:intron 55.0%
TGTCGTCATTTACGGCGCTC+AGG + Chr5:5493251-5493270 MsG0580024486.01.T01:intron 55.0%
TTAGACGGACCTCGCTCGAA+TGG + Chr5:5491494-5491513 MsG0580024486.01.T01:intron 55.0%
Chromosome Type Strat End Strand Name
Chr5 gene 5489899 5493901 5489899 ID=MsG0580024486.01;Name=MsG0580024486.01
Chr5 mRNA 5489899 5493901 5489899 ID=MsG0580024486.01.T01;Parent=MsG0580024486.01;Name=MsG0580024486.01.T01;_AED=0.27;_eAED=0.27;_QI=0|0|0|0.66|0.5|0.66|3|0|171
Chr5 exon 5489899 5489965 5489899 ID=MsG0580024486.01.T01:exon:19070;Parent=MsG0580024486.01.T01
Chr5 exon 5491852 5492067 5491852 ID=MsG0580024486.01.T01:exon:19071;Parent=MsG0580024486.01.T01
Chr5 exon 5493669 5493901 5493669 ID=MsG0580024486.01.T01:exon:19072;Parent=MsG0580024486.01.T01
Chr5 CDS 5489899 5489965 5489899 ID=MsG0580024486.01.T01:cds;Parent=MsG0580024486.01.T01
Chr5 CDS 5491852 5492067 5491852 ID=MsG0580024486.01.T01:cds;Parent=MsG0580024486.01.T01
Chr5 CDS 5493669 5493901 5493669 ID=MsG0580024486.01.T01:cds;Parent=MsG0580024486.01.T01
Gene Sequence

>MsG0580024486.01.T01

ATGCAAATAGGCGTTCGTGAGAAATTCGCGAGATATGCTGTCGTGAGATATAACAATGCTCTTGAAATTGATTCATCATCCGACTTGTCACAATTTACCAACAGAAATGTGACAAGAAAGCTTACCCCTATTTCACCTGGTAGATACGTTCTAAAGCGTCCTAGAAATTTGCATTGCGGTGACCTAAACAAAGCAACCGTAACCGGGTCAAATGAGAATCAAAGCTTTTATCTAGAGTGTGACGAGAATGGTGAAGATTGTGATGTTCCTGACAATGATTTGGTTGCTTCATCATCCGACTTATCACAATTTACCAACAGAAATGTGACAAGAAAGCTTACCCCTATTTCACCTGGTAGATACGTTCTAAAGCGTCCTGGAAATTTGAATTGCAGTGACCTAAACAAAGCAACCATAACCGGGTCATATGAGAATCAAAGCTTTTATCTAGAGTGTGACGAGAATGGTGAAGATTGTGACGTTCCTGACAATGAATTGGGTAAGTTTTGCTATTAA
Protein sequence

>MsG0580024486.01.T01

MQIGVREKFARYAVVRYNNALEIDSSSDLSQFTNRNVTRKLTPISPGRYVLKRPRNLHCGDLNKATVTGSNENQSFYLECDENGEDCDVPDNDLVASSSDLSQFTNRNVTRKLTPISPGRYVLKRPGNLNCSDLNKATITGSYENQSFYLECDENGEDCDVPDNELGKFCY*