AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024518.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024518.01.T01 MTR_5g012770 94.336 459 7 2 1 455 66 509 0.0 893
MsG0580024518.01.T01 MTR_4g100810 84.564 447 69 0 1 447 50 496 0.0 811
MsG0580024518.01.T01 MTR_3g115220 63.196 413 150 2 30 441 82 493 0.0 553
MsG0580024518.01.T01 MTR_5g099010 59.770 435 161 3 19 441 68 500 0.0 547
MsG0580024518.01.T01 MTR_1g031590 41.204 432 222 10 31 440 125 546 1.09e-108 332
MsG0580024518.01.T01 MTR_4g084570 41.509 424 225 10 46 447 132 554 3.79e-104 321
MsG0580024518.01.T01 MTR_3g005340 41.355 428 230 9 32 442 123 546 3.36e-102 317
MsG0580024518.01.T01 MTR_5g042200 42.857 413 213 9 55 450 81 487 1.25e-100 310
MsG0580024518.01.T01 MTR_4g019210 41.435 432 227 11 27 442 202 623 1.27e-99 311
MsG0580024518.01.T01 MTR_4g082310 42.754 414 212 10 55 450 93 499 1.54e-99 307
MsG0580024518.01.T01 MTR_5g064620 42.347 392 213 7 29 415 84 467 7.32e-96 298
MsG0580024518.01.T01 MTR_6g016015 42.893 401 215 8 52 439 108 507 1.23e-95 297
MsG0580024518.01.T01 MTR_5g081690 39.862 434 229 14 29 443 93 513 1.99e-95 297
MsG0580024518.01.T01 MTR_4g125460 39.310 435 236 9 24 441 56 479 5.87e-95 295
MsG0580024518.01.T01 MTR_5g059260 45.915 355 170 7 60 395 158 509 9.13e-95 298
MsG0580024518.01.T01 MTR_4g110030 41.895 401 219 8 52 439 109 508 1.64e-94 295
MsG0580024518.01.T01 MTR_3g099480 42.172 396 215 7 31 419 115 503 2.65e-94 295
MsG0580024518.01.T01 MTR_3g086570 38.776 441 241 12 24 440 112 547 3.65e-94 295
MsG0580024518.01.T01 MTR_2g059350 41.935 403 216 9 52 439 108 507 1.16e-93 293
MsG0580024518.01.T01 MTR_4g125460 39.310 435 236 9 24 441 195 618 2.73e-93 295
MsG0580024518.01.T01 MTR_2g016470 37.923 414 210 10 43 411 174 585 5.67e-91 288
MsG0580024518.01.T01 MTR_3g096020 42.005 369 203 5 31 395 164 525 1.34e-88 281
MsG0580024518.01.T01 MTR_4g132590 36.617 467 236 13 26 440 34 492 2.54e-87 275
MsG0580024518.01.T01 MTR_4g132590 36.617 467 236 13 26 440 133 591 4.98e-86 275
MsG0580024518.01.T01 MTR_5g032100 36.623 456 232 13 30 441 60 502 1.28e-82 263
MsG0580024518.01.T01 MTR_3g100310 37.705 427 225 14 51 440 93 515 1.64e-78 253
MsG0580024518.01.T01 MTR_1g102030 40.599 367 202 6 59 411 88 452 9.48e-78 251
MsG0580024518.01.T01 MTR_3g026650 37.292 421 248 9 30 440 142 556 1.59e-75 246
MsG0580024518.01.T01 MTR_4g023030 37.089 426 254 7 30 446 202 622 2.33e-72 240
MsG0580024518.01.T01 MTR_3g086570 38.700 323 172 9 24 324 112 430 6.25e-68 223
MsG0580024518.01.T01 MTR_3g026650 39.255 349 201 5 30 371 142 486 3.82e-66 220
MsG0580024518.01.T01 MTR_1g101990 41.176 255 145 4 171 421 6 259 3.02e-52 179
MsG0580024518.01.T01 MTR_4g010990 31.608 367 221 9 29 384 46 393 6.97e-52 181
MsG0580024518.01.T01 MTR_4g010990 32.087 321 189 8 75 384 2 304 5.00e-46 163
MsG0580024518.01.T01 MTR_7g017330 35.526 304 170 9 48 331 88 385 9.22e-46 169
MsG0580024518.01.T01 MTR_3g092590 32.313 294 184 6 56 334 87 380 2.09e-42 158
MsG0580024518.01.T01 MTR_3g092590 32.313 294 184 6 56 334 87 380 6.09e-42 158
MsG0580024518.01.T01 MTR_3g026650 37.405 262 154 4 30 285 142 399 1.75e-40 149
MsG0580024518.01.T01 MTR_1g007390 30.667 300 187 7 56 334 87 386 2.14e-35 139
MsG0580024518.01.T01 MTR_7g064210 41.279 172 82 4 180 336 26 193 2.06e-32 127
MsG0580024518.01.T01 MTR_2g038320 29.310 348 198 13 51 387 84 394 3.14e-30 122
MsG0580024518.01.T01 MTR_4g008200 28.382 377 213 15 24 386 5 338 5.17e-28 114
MsG0580024518.01.T01 MTR_4g008200 28.382 377 213 15 24 386 56 389 1.30e-27 114
MsG0580024518.01.T01 MTR_1g101985 44.340 106 57 1 30 135 61 164 5.29e-22 93.2
MsG0580024518.01.T01 MTR_1g095680 43.023 86 38 1 185 259 9 94 3.33e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024518.01.T01 AT4G16650 77.384 451 99 1 1 451 67 514 0.0 723
MsG0580024518.01.T01 AT4G16650 77.384 451 99 1 1 451 67 514 0.0 723
MsG0580024518.01.T01 AT4G38390 61.298 416 160 1 26 440 90 505 0.0 550
MsG0580024518.01.T01 AT1G20550 57.919 442 182 3 15 455 65 503 0.0 543
MsG0580024518.01.T01 AT1G76270 60.432 417 162 2 26 441 73 487 0.0 540
MsG0580024518.01.T01 AT1G14970 43.230 421 216 10 44 442 15 434 5.43e-110 332
MsG0580024518.01.T01 AT1G14970 44.279 402 206 9 58 442 8 408 7.91e-110 331
MsG0580024518.01.T01 AT1G14970 42.000 450 236 11 15 442 108 554 2.25e-109 335
MsG0580024518.01.T01 AT2G01480 42.993 421 217 10 44 442 134 553 3.35e-108 332
MsG0580024518.01.T01 AT2G01480 46.113 373 180 8 44 395 134 506 7.89e-107 327
MsG0580024518.01.T01 AT2G03280 43.921 403 202 10 55 439 84 480 2.08e-100 309
MsG0580024518.01.T01 AT1G14020 43.108 399 214 7 55 441 87 484 2.98e-99 306
MsG0580024518.01.T01 AT1G35510 40.920 435 229 9 29 443 133 559 4.14e-99 308
MsG0580024518.01.T01 AT5G15740 42.394 401 217 8 52 439 99 498 2.05e-97 302
MsG0580024518.01.T01 AT3G02250 44.828 377 200 6 52 421 99 474 3.07e-97 301
MsG0580024518.01.T01 AT1G38065 42.250 400 202 10 40 422 13 400 4.02e-97 300
MsG0580024518.01.T01 AT1G38065 43.570 381 192 9 59 422 36 410 6.33e-97 300
MsG0580024518.01.T01 AT2G37980 38.839 448 239 12 26 452 194 627 1.75e-96 303
MsG0580024518.01.T01 AT1G38131 43.570 381 192 9 59 422 155 529 1.88e-95 299
MsG0580024518.01.T01 AT3G26370 38.964 444 238 12 24 441 120 556 9.51e-95 296
MsG0580024518.01.T01 AT2G03280 41.176 425 209 9 55 439 84 507 2.16e-94 294
MsG0580024518.01.T01 AT5G64600 44.152 342 183 4 59 396 117 454 1.25e-93 293
MsG0580024518.01.T01 AT1G22460 42.935 368 199 7 31 394 135 495 1.91e-92 291
MsG0580024518.01.T01 AT3G54100 38.128 438 246 12 26 447 190 618 5.90e-92 291
MsG0580024518.01.T01 AT5G35570 40.416 433 220 12 31 441 225 641 1.05e-90 289
MsG0580024518.01.T01 AT1G62330 35.914 465 241 13 28 441 192 650 1.35e-89 286
MsG0580024518.01.T01 AT1G04910 38.902 419 245 7 30 441 61 475 4.00e-89 281
MsG0580024518.01.T01 AT5G01100 37.408 409 235 9 30 428 190 587 2.16e-86 277
MsG0580024518.01.T01 AT1G11990 38.272 405 227 10 30 415 163 563 6.11e-86 275
MsG0580024518.01.T01 AT4G24530 35.699 479 256 14 6 441 48 517 1.10e-84 269
MsG0580024518.01.T01 AT1G29200 38.298 423 216 9 33 411 43 464 3.83e-84 267
MsG0580024518.01.T01 AT1G29200 38.298 423 216 9 33 411 43 464 3.83e-84 267
MsG0580024518.01.T01 AT1G29200 38.298 423 216 9 33 411 159 580 6.73e-83 267
MsG0580024518.01.T01 AT5G65470 34.967 449 249 11 30 440 59 502 2.81e-80 258
MsG0580024518.01.T01 AT1G29200 39.130 391 194 8 64 411 1 390 1.37e-79 253
MsG0580024518.01.T01 AT1G11990 35.068 442 227 11 30 415 148 585 2.99e-79 258
MsG0580024518.01.T01 AT2G44500 38.551 428 234 12 30 440 146 561 3.66e-77 251
MsG0580024518.01.T01 AT5G63390 36.667 420 253 8 30 440 133 548 2.15e-75 246
MsG0580024518.01.T01 AT3G07900 37.355 431 255 9 22 442 149 574 6.79e-74 243
MsG0580024518.01.T01 AT1G52630 32.059 340 214 7 59 394 74 400 1.18e-50 178
MsG0580024518.01.T01 AT3G26370 37.052 251 141 6 24 260 120 367 8.98e-46 164
MsG0580024518.01.T01 AT3G30300 35.644 303 173 9 46 331 90 387 1.01e-45 169
MsG0580024518.01.T01 AT3G30300 35.644 303 173 9 46 331 90 387 1.01e-45 169
MsG0580024518.01.T01 AT1G52630 30.120 332 199 7 75 394 2 312 4.57e-45 160
MsG0580024518.01.T01 AT3G03810 34.106 302 183 8 48 334 79 379 3.49e-43 161
MsG0580024518.01.T01 AT3G03810 34.106 302 183 8 48 334 79 379 3.49e-43 161
MsG0580024518.01.T01 AT2G44500 36.641 262 157 4 30 285 146 404 1.22e-40 150
MsG0580024518.01.T01 AT3G21190 28.235 340 195 12 59 386 90 392 7.28e-27 112
MsG0580024518.01.T01 AT1G51630 27.941 340 196 12 59 386 91 393 1.42e-25 108

Find 96 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCATGCCTTAACCTTTC+TGG 0.108482 5:-5961431 None:intergenic
TGTTTATAATAGGAGATATA+TGG 0.246061 5:+5961324 MsG0580024518.01.T01:intron
ATTGATCTCATCACCTTATC+AGG 0.260179 5:-5958639 None:intergenic
CTTGGGACACGCATTGTATA+TGG 0.264993 5:-5958672 None:intergenic
AAATTGTCTAAATATTATTA+TGG 0.273003 5:+5957421 MsG0580024518.01.T01:CDS
CCTGAAAAGGCTAGCATATC+TGG 0.273488 5:-5959389 None:intergenic
AGTTGGATCATCATTCTTAT+TGG 0.287747 5:+5958439 MsG0580024518.01.T01:CDS
CCTCGCTTCCTTTCTCCATC+TGG 0.299320 5:-5959977 None:intergenic
ATCTCCTTTGTATAGATGTT+AGG 0.318976 5:-5960136 None:intergenic
GTGCTAAGCTTCTTTGCATT+TGG 0.323021 5:-5961367 None:intergenic
AACTTGATCAAGATAATAAT+CGG 0.343642 5:-5958706 None:intergenic
GCTCTCCCATGAATCCTCTT+TGG 0.363004 5:-5961450 None:intergenic
GTTGCATCGGGAGAAATATA+TGG 0.373675 5:+5960076 MsG0580024518.01.T01:CDS
GTTTGACCAAGTTCTTGAAT+AGG 0.379703 5:-5959020 None:intergenic
ACCGTGCACCCATTGATATA+TGG 0.384250 5:+5957392 MsG0580024518.01.T01:CDS
AGCTTGGTGAAATCAGAAAA+AGG 0.386962 5:+5959447 MsG0580024518.01.T01:CDS
ACCTGTCGTCTCAAAAGAAT+TGG 0.388497 5:-5958732 None:intergenic
TTTAGATTTCCATATATCAA+TGG 0.393961 5:-5957401 None:intergenic
TTGGGACACGCATTGTATAT+GGG 0.397785 5:-5958671 None:intergenic
GGATTGAATCAACAAAGAAC+TGG 0.404396 5:+5958148 MsG0580024518.01.T01:CDS
GGCATGCCAAAGAGGATTCA+TGG 0.413310 5:+5961444 MsG0580024518.01.T01:CDS
CCTTCGACCAGCTAGAATCT+TGG 0.414719 5:-5960275 None:intergenic
TAATCGGGTTCTGATTTCCT+TGG 0.421676 5:-5958690 None:intergenic
GTTTATAATAGGAGATATAT+GGG 0.423059 5:+5961325 MsG0580024518.01.T01:intron
CGTCCAGGTCTCATCTCATC+TGG 0.430826 5:-5961472 None:intergenic
TTGTTGATTCAATCCTCCAC+TGG 0.432521 5:-5958140 None:intergenic
AATCGGGTTCTGATTTCCTT+GGG 0.434363 5:-5958689 None:intergenic
CCCACTTCATGAGGAGTAAG+AGG 0.434476 5:-5960007 None:intergenic
TCTCCTTTGTATAGATGTTA+GGG 0.441328 5:-5960135 None:intergenic
GCAGAAAAGAAAACCTCAAA+TGG 0.445594 5:-5959088 None:intergenic
GTTTCATAGCAGTCCATTTG+AGG 0.448307 5:+5959075 MsG0580024518.01.T01:CDS
ACATGCTTTCTGATCTTGAA+TGG 0.450545 5:+5957213 None:intergenic
TTAGATTTCCATATATCAAT+GGG 0.452046 5:-5957400 None:intergenic
TACCTTCGCCAGAAAGGTTA+AGG 0.454344 5:+5961423 MsG0580024518.01.T01:CDS
ACCAAAATAACAACCTGAAA+AGG 0.486933 5:-5959402 None:intergenic
GAGAAAGAAAGAAATGAGCT+TGG 0.488177 5:+5959431 MsG0580024518.01.T01:CDS
TCTCTCACAAACACAAGAGC+TGG 0.490882 5:-5961515 None:intergenic
TGCCTTAACCTTTCTGGCGA+AGG 0.491638 5:-5961425 None:intergenic
ACAAAACCTATTCAAGAACT+TGG 0.495920 5:+5959014 MsG0580024518.01.T01:CDS
GTAGTCTACAGCGGCTAGGC+GGG 0.497730 5:-5960200 None:intergenic
GCGGCTAGGCGGGATGAGAA+TGG 0.503816 5:-5960190 None:intergenic
TGTCAAAAGAGTTCCTGATA+AGG 0.507750 5:+5958626 MsG0580024518.01.T01:CDS
ATTTGAGTCCAGATGGAGAA+AGG 0.511235 5:+5959969 MsG0580024518.01.T01:CDS
GGTTTGATGTTACGCGCACT+TGG 0.513582 5:+5960028 MsG0580024518.01.T01:CDS
CACATACCTCTATGTTGCAT+CGG 0.516486 5:+5960063 MsG0580024518.01.T01:CDS
TGAATGGTATTCTCATCGAT+TGG 0.519424 5:+5957229 MsG0580024518.01.T01:CDS
CGGGATGAGAATGGAAGAAA+AGG 0.524026 5:-5960181 None:intergenic
CGGGAAGGCATCAGATGGAC+TGG 0.526918 5:+5961398 MsG0580024518.01.T01:CDS
TGGGACACGCATTGTATATG+GGG 0.528406 5:-5958670 None:intergenic
ACATACCTCTATGTTGCATC+GGG 0.530349 5:+5960064 MsG0580024518.01.T01:CDS
GGATCATCATTCTTATTGGA+AGG 0.535696 5:+5958443 MsG0580024518.01.T01:CDS
ACTTGATCAAGATAATAATC+GGG 0.536000 5:-5958705 None:intergenic
TCAAATGGACTGCTATGAAA+CGG 0.539398 5:-5959073 None:intergenic
TCCTCTTACTCCTCATGAAG+TGG 0.539526 5:+5960006 MsG0580024518.01.T01:CDS
CCTCTTACTCCTCATGAAGT+GGG 0.541378 5:+5960007 MsG0580024518.01.T01:CDS
TTGCTTATTGCAGCCAGTGG+AGG 0.542071 5:+5958127 MsG0580024518.01.T01:CDS
GAGCCAGATGAGATGAGACC+TGG 0.545176 5:+5961469 MsG0580024518.01.T01:CDS
TGATAAGGTGATGAGATCAA+TGG 0.547039 5:+5958641 MsG0580024518.01.T01:CDS
CTGGCATACCTTCGCCAGAA+AGG 0.547774 5:+5961417 MsG0580024518.01.T01:CDS
AAATAGGATTTGAGTCCAGA+TGG 0.553327 5:+5959962 MsG0580024518.01.T01:intron
CTCTCACAAACACAAGAGCT+GGG 0.560650 5:-5961514 None:intergenic
AACATGGCCAAGATTCTAGC+TGG 0.561681 5:+5960268 MsG0580024518.01.T01:CDS
GCATGCCAAAGAGGATTCAT+GGG 0.563632 5:+5961445 MsG0580024518.01.T01:CDS
TGTTACGAGAATGCAGAAGA+TGG 0.570027 5:+5959046 MsG0580024518.01.T01:CDS
TACTTGCTTATTGCAGCCAG+TGG 0.574430 5:+5958124 MsG0580024518.01.T01:CDS
TCGTGATGGTCATCTCGTCC+AGG 0.574549 5:-5961487 None:intergenic
ATTCTTATTGGAAGGATGAG+AGG 0.587254 5:+5958451 MsG0580024518.01.T01:CDS
ACGAATTCTTAATGCTACGC+TGG 0.588010 5:+5958407 MsG0580024518.01.T01:CDS
TCCATATATCAATGGGTGCA+CGG 0.590508 5:-5957393 None:intergenic
CCAGATGGAGAAAGGAAGCG+AGG 0.598706 5:+5959977 MsG0580024518.01.T01:CDS
TTTCCCTAACATCTATACAA+AGG 0.599447 5:+5960132 MsG0580024518.01.T01:CDS
TACTAACAACAATGGCAACA+TGG 0.600721 5:+5960252 MsG0580024518.01.T01:CDS
CAGATGGAGAAAGGAAGCGA+GGG 0.604140 5:+5959978 MsG0580024518.01.T01:CDS
GATTGAATCAACAAAGAACT+GGG 0.605354 5:+5958149 MsG0580024518.01.T01:CDS
CCAAGATTCTAGCTGGTCGA+AGG 0.607748 5:+5960275 MsG0580024518.01.T01:CDS
AACATCAAACCCACTTCATG+AGG 0.611141 5:-5960016 None:intergenic
TACGCTGGTTGTACCTGAGT+TGG 0.611847 5:+5958422 MsG0580024518.01.T01:CDS
TTTCTCCCGATGCAACATAG+AGG 0.613162 5:-5960069 None:intergenic
CAATGTAGTCTACAGCGGCT+AGG 0.614499 5:-5960204 None:intergenic
GGGACACGCATTGTATATGG+GGG 0.616024 5:-5958669 None:intergenic
CATATACAATGCGTGTCCCA+AGG 0.618244 5:+5958673 MsG0580024518.01.T01:CDS
GTATTTGTTACTAACAACAA+TGG 0.620898 5:+5960244 MsG0580024518.01.T01:CDS
TGTAGTCTACAGCGGCTAGG+CGG 0.622536 5:-5960201 None:intergenic
TAAGAATGATGATCCAACTC+AGG 0.623565 5:-5958435 None:intergenic
ATCGGGAGAAATATATGGAG+GGG 0.625932 5:+5960081 MsG0580024518.01.T01:CDS
AAGGTTAAGGCATGCCAAAG+AGG 0.627153 5:+5961436 MsG0580024518.01.T01:CDS
GCATCGGGAGAAATATATGG+AGG 0.640908 5:+5960079 MsG0580024518.01.T01:CDS
CATCGGGAGAAATATATGGA+GGG 0.644373 5:+5960080 MsG0580024518.01.T01:CDS
GTGCGTGAGCAGATGTCGAA+TGG 0.645428 5:+5958100 MsG0580024518.01.T01:CDS
TATTATGGATGCAGTGACAG+AGG 0.653385 5:+5957436 MsG0580024518.01.T01:CDS
TTAGGGAAAAGATCTTTGAG+AGG 0.654145 5:-5960118 None:intergenic
TCAAAGCATGGAAATTAACA+CGG 0.662029 5:-5958986 None:intergenic
AAGAGCTGGGAAATTCGTGA+TGG 0.664397 5:-5961501 None:intergenic
GAAACTTACGAGCATAATCG+CGG 0.695542 5:-5957459 None:intergenic
ATTGAATCAACAAAGAACTG+GGG 0.728844 5:+5958150 MsG0580024518.01.T01:CDS
ACAAACAATGTAGTCTACAG+CGG 0.728868 5:-5960209 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTGTCTAAATATTATTA+TGG + Chr5:5957421-5957440 MsG0580024518.01.T01:CDS 10.0%
!! TAAAAATAGAAAGATTAATA+AGG - Chr5:5957300-5957319 None:intergenic 10.0%
!!! TTTTGATTTATATTAGAAAT+AGG + Chr5:5960483-5960502 MsG0580024518.01.T01:intron 10.0%
!! AAAATTTAAAAAATAACACG+TGG + Chr5:5959682-5959701 MsG0580024518.01.T01:intron 15.0%
!! ATTGTTAATTGCAATTAAAA+AGG - Chr5:5959339-5959358 None:intergenic 15.0%
!! TATTTGTTTACTTATACTTT+GGG + Chr5:5959184-5959203 MsG0580024518.01.T01:intron 15.0%
!!! GCTTGAAATTTTTATTTTAA+TGG + Chr5:5958765-5958784 MsG0580024518.01.T01:intron 15.0%
!!! TAACAAGTTATATTTTTCAT+AGG - Chr5:5961073-5961092 None:intergenic 15.0%
!!! TAGTTATTTTGATTTCTTTT+AGG + Chr5:5957360-5957379 MsG0580024518.01.T01:intron 15.0%
!!! TATTTTTCTATTAATCAGTA+GGG - Chr5:5958252-5958271 None:intergenic 15.0%
!!! TTATTTTTCTATTAATCAGT+AGG - Chr5:5958253-5958272 None:intergenic 15.0%
!!! TTTGTAGTTTTTTTTTCTTA+GGG - Chr5:5959611-5959630 None:intergenic 15.0%
!!! TTTTAAATTTTTTTGGACTT+GGG - Chr5:5959673-5959692 None:intergenic 15.0%
!!! TTTTGTAGTTTTTTTTTCTT+AGG - Chr5:5959612-5959631 None:intergenic 15.0%
!!! TTTTTAAATTTTTTTGGACT+TGG - Chr5:5959674-5959693 None:intergenic 15.0%
!! AAATAAAAATTTCAAGCAAG+TGG - Chr5:5958762-5958781 None:intergenic 20.0%
!! AACTTGATCAAGATAATAAT+CGG - Chr5:5958709-5958728 None:intergenic 20.0%
!! AATGTTAGAAATAAGAGTTT+GGG + Chr5:5959300-5959319 MsG0580024518.01.T01:intron 20.0%
!! AATTAGTGTATATTCATAGT+TGG + Chr5:5957496-5957515 MsG0580024518.01.T01:intron 20.0%
!! ACAAATAATGTGATAGAAAT+AGG - Chr5:5957795-5957814 None:intergenic 20.0%
!! ACAAATCTTGTATGATATAA+AGG + Chr5:5960848-5960867 MsG0580024518.01.T01:intron 20.0%
!! ATAAATGATCTTCTTAAGAA+TGG + Chr5:5958010-5958029 MsG0580024518.01.T01:intron 20.0%
!! CATATAAGAATCAAGTTTAA+TGG + Chr5:5958499-5958518 MsG0580024518.01.T01:intron 20.0%
!! CATTAAACTTGATTCTTATA+TGG - Chr5:5958501-5958520 None:intergenic 20.0%
!! GATTTATATTAGAAATAGGT+GGG + Chr5:5960487-5960506 MsG0580024518.01.T01:intron 20.0%
!! GTATTTGTTTACTTATACTT+TGG + Chr5:5959183-5959202 MsG0580024518.01.T01:intron 20.0%
!! GTTTATAATAGGAGATATAT+GGG + Chr5:5961325-5961344 MsG0580024518.01.T01:intron 20.0%
!! TAAATGATCTTCTTAAGAAT+GGG + Chr5:5958011-5958030 MsG0580024518.01.T01:intron 20.0%
!! TAACAAACCAAAATACAAAA+TGG - Chr5:5957987-5958006 None:intergenic 20.0%
!! TATCCTCAATTATTAACTAT+TGG - Chr5:5960955-5960974 None:intergenic 20.0%
!! TGATTTATATTAGAAATAGG+TGG + Chr5:5960486-5960505 MsG0580024518.01.T01:intron 20.0%
!! TGTTCGTTTATTACATAAAT+GGG + Chr5:5960331-5960350 MsG0580024518.01.T01:intron 20.0%
!! TGTTTATAATAGGAGATATA+TGG + Chr5:5961324-5961343 MsG0580024518.01.T01:intron 20.0%
!! TTAGATTTCCATATATCAAT+GGG - Chr5:5957403-5957422 None:intergenic 20.0%
!! TTATGTAATAAACGAACAAA+AGG - Chr5:5960329-5960348 None:intergenic 20.0%
!! TTCAATTTCAAAACATTGTA+AGG - Chr5:5959121-5959140 None:intergenic 20.0%
!! TTGAAAAAGAATGGTAAATA+AGG - Chr5:5960987-5961006 None:intergenic 20.0%
!! TTGTTCGTTTATTACATAAA+TGG + Chr5:5960330-5960349 MsG0580024518.01.T01:intron 20.0%
!! TTTAGATTACAACGTTAATT+AGG - Chr5:5960916-5960935 None:intergenic 20.0%
!! TTTAGATTTCCATATATCAA+TGG - Chr5:5957404-5957423 None:intergenic 20.0%
!! TTTCCAATAGTTAATAATTG+AGG + Chr5:5960949-5960968 MsG0580024518.01.T01:intron 20.0%
!!! AAAAATATAACTTGTTACAG+GGG + Chr5:5961076-5961095 MsG0580024518.01.T01:intron 20.0%
!!! ATGAAATGAGAATTTTGTTT+AGG + Chr5:5958206-5958225 MsG0580024518.01.T01:intron 20.0%
!!! ATTTTGATTTCTTTTAGGAT+GGG + Chr5:5957365-5957384 MsG0580024518.01.T01:intron 20.0%
!!! ATTTTTCTATTAATCAGTAG+GGG - Chr5:5958251-5958270 None:intergenic 20.0%
!!! GAAAAATATAACTTGTTACA+GGG + Chr5:5961075-5961094 MsG0580024518.01.T01:intron 20.0%
!!! GTTTTGTAGTTTTTTTCTTA+GGG + Chr5:5959794-5959813 MsG0580024518.01.T01:intron 20.0%
!!! TATTTTGATTTCTTTTAGGA+TGG + Chr5:5957364-5957383 MsG0580024518.01.T01:intron 20.0%
!!! TGAAAAATATAACTTGTTAC+AGG + Chr5:5961074-5961093 MsG0580024518.01.T01:intron 20.0%
!!! TTGCATAGCAAAATAATTTT+AGG - Chr5:5959870-5959889 None:intergenic 20.0%
!!! TTGTAGTTTTTTTTTCTTAG+GGG - Chr5:5959610-5959629 None:intergenic 20.0%
!!! TTTAAATTTTTTTGGACTTG+GGG - Chr5:5959672-5959691 None:intergenic 20.0%
!!! TTTTGTAGTTTTTTTCTTAG+GGG + Chr5:5959795-5959814 MsG0580024518.01.T01:intron 20.0%
! AACTCTACAGTTTGAATATT+AGG - Chr5:5960884-5960903 None:intergenic 25.0%
! AAGAAAATGCTATAATTGCA+GGG + Chr5:5957751-5957770 MsG0580024518.01.T01:intron 25.0%
! ACTTGATCAAGATAATAATC+GGG - Chr5:5958708-5958727 None:intergenic 25.0%
! AGTATGTATATCATAGATTC+AGG + Chr5:5961172-5961191 MsG0580024518.01.T01:intron 25.0%
! ATAGTGATGATTATTCTGTT+AGG + Chr5:5960431-5960450 MsG0580024518.01.T01:intron 25.0%
! ATGACAAAGTTGAAAAAGAA+TGG - Chr5:5960996-5961015 None:intergenic 25.0%
! CAATGTTAGAAATAAGAGTT+TGG + Chr5:5959299-5959318 MsG0580024518.01.T01:intron 25.0%
! CATATTGAATGTTTCATTTG+TGG + Chr5:5957922-5957941 MsG0580024518.01.T01:intron 25.0%
! GTAAGAATACAAAACTACTA+TGG + Chr5:5960297-5960316 MsG0580024518.01.T01:intron 25.0%
! TAAAGCTTGTATATGGAATT+TGG + Chr5:5961106-5961125 MsG0580024518.01.T01:intron 25.0%
! TTCAGAAATAAAATTGGACA+TGG + Chr5:5960784-5960803 MsG0580024518.01.T01:intron 25.0%
!! CACTTCTCTTTGTTTATAAT+AGG + Chr5:5961314-5961333 MsG0580024518.01.T01:intron 25.0%
!! CACTTTCTTCTTTTCATAAT+CGG + Chr5:5958063-5958082 MsG0580024518.01.T01:intron 25.0%
!! GCTTTTTAACCAAAAATCAA+AGG - Chr5:5961283-5961302 None:intergenic 25.0%
!! GTATTTGTTACTAACAACAA+TGG + Chr5:5960244-5960263 MsG0580024518.01.T01:CDS 25.0%
!! TCAAATCCTATTTTATCACA+AGG - Chr5:5959955-5959974 None:intergenic 25.0%
!! TCAATATTTTCGATGTTGAT+TGG + Chr5:5958571-5958590 MsG0580024518.01.T01:CDS 25.0%
!! TTTCATAGGAATTTTTGCTT+TGG - Chr5:5961059-5961078 None:intergenic 25.0%
!!! AAAATATAACTTGTTACAGG+GGG + Chr5:5961077-5961096 MsG0580024518.01.T01:intron 25.0%
!!! AAAGAGAAGTGTTTAAAAGA+AGG - Chr5:5961305-5961324 None:intergenic 25.0%
!!! CAAACTCTTATTTCTAACAT+TGG - Chr5:5959301-5959320 None:intergenic 25.0%
!!! GGTTTTGTAGTTTTTTTCTT+AGG + Chr5:5959793-5959812 MsG0580024518.01.T01:intron 25.0%
!!! TCCAATTTTATTTCTGAACA+GGG - Chr5:5960782-5960801 None:intergenic 25.0%
!!! TGTAGTTTTTTTTTCTTAGG+GGG - Chr5:5959609-5959628 None:intergenic 25.0%
!!! TTAAATTTTTTTGGACTTGG+GGG - Chr5:5959671-5959690 None:intergenic 25.0%
!!! TTTGTAGTTTTTTTCTTAGG+GGG + Chr5:5959796-5959815 MsG0580024518.01.T01:intron 25.0%
AAAGGTTGAGGAAAAAAAGT+AGG - Chr5:5961265-5961284 None:intergenic 30.0%
AAGAAACAGTTAGAAGTCAA+TGG - Chr5:5959501-5959520 None:intergenic 30.0%
AATAAAATTGGACATGGTTG+TGG + Chr5:5960790-5960809 MsG0580024518.01.T01:intron 30.0%
ACAAAACCTATTCAAGAACT+TGG + Chr5:5959014-5959033 MsG0580024518.01.T01:CDS 30.0%
ACAACAACATCTGTATATGT+AGG + Chr5:5957689-5957708 MsG0580024518.01.T01:intron 30.0%
ACCAAAATAACAACCTGAAA+AGG - Chr5:5959405-5959424 None:intergenic 30.0%
ACCCTGTTCAGAAATAAAAT+TGG + Chr5:5960778-5960797 MsG0580024518.01.T01:intron 30.0%
AGTTGGATCATCATTCTTAT+TGG + Chr5:5958439-5958458 MsG0580024518.01.T01:CDS 30.0%
ATCTCCTTTGTATAGATGTT+AGG - Chr5:5960139-5960158 None:intergenic 30.0%
ATTGAATCAACAAAGAACTG+GGG + Chr5:5958150-5958169 MsG0580024518.01.T01:CDS 30.0%
CAACAACATCTGTATATGTA+GGG + Chr5:5957690-5957709 MsG0580024518.01.T01:intron 30.0%
CAAGAAAATGCTATAATTGC+AGG + Chr5:5957750-5957769 MsG0580024518.01.T01:intron 30.0%
CATTTAAACGCAATCAACAA+AGG + Chr5:5960374-5960393 MsG0580024518.01.T01:intron 30.0%
CTTGATGAAACATAAGAACT+TGG + Chr5:5958813-5958832 MsG0580024518.01.T01:intron 30.0%
CTTGTATATGGAATTTGGTT+TGG + Chr5:5961111-5961130 MsG0580024518.01.T01:intron 30.0%
GAAAAGAAGAAAGTGAGAAA+TGG - Chr5:5958058-5958077 None:intergenic 30.0%
GATGAAGAATCATAATTGTC+CGG - Chr5:5958361-5958380 None:intergenic 30.0%
GATTGAATCAACAAAGAACT+GGG + Chr5:5958149-5958168 MsG0580024518.01.T01:CDS 30.0%
GTTTCATCAAGACAGTTATT+TGG - Chr5:5958804-5958823 None:intergenic 30.0%
GTTTCTGTAAAGCTTGTATA+TGG + Chr5:5961099-5961118 MsG0580024518.01.T01:intron 30.0%
TAACATTAAGGAGATGTTTC+AGG + Chr5:5958893-5958912 MsG0580024518.01.T01:intron 30.0%
TAACCAAAAATCAAAGGTTG+AGG - Chr5:5961277-5961296 None:intergenic 30.0%
TCAAAGCATGGAAATTAACA+CGG - Chr5:5958989-5959008 None:intergenic 30.0%
TCTCCTTTGTATAGATGTTA+GGG - Chr5:5960138-5960157 None:intergenic 30.0%
TGATTGAGCAACTAACATTA+AGG + Chr5:5958881-5958900 MsG0580024518.01.T01:intron 30.0%
TGTAATAAACGAACAAAAGG+AGG - Chr5:5960326-5960345 None:intergenic 30.0%
TTGTTGCCTTGTGATAAAAT+AGG + Chr5:5959946-5959965 MsG0580024518.01.T01:intron 30.0%
TTTACTTAGAATGCCATATC+AGG - Chr5:5959533-5959552 None:intergenic 30.0%
TTTATGTTCTGTTTATTCGC+TGG + Chr5:5960554-5960573 MsG0580024518.01.T01:intron 30.0%
TTTCCCTAACATCTATACAA+AGG + Chr5:5960132-5960151 MsG0580024518.01.T01:CDS 30.0%
! AAGAGCTCCATTTTGTATTT+TGG + Chr5:5957977-5957996 MsG0580024518.01.T01:intron 30.0%
! ACATACTTTTGCATCAAGTT+TGG - Chr5:5961159-5961178 None:intergenic 30.0%
! ACCAATCTAGAGTAAAAAGT+AGG - Chr5:5957260-5957279 None:intergenic 30.0%
! CCAATCTAGAGTAAAAAGTA+GGG - Chr5:5957259-5957278 None:intergenic 30.0%
! GAAACATAAGAACTTGGTTT+TGG + Chr5:5958819-5958838 MsG0580024518.01.T01:intron 30.0%
! TTACTTATACTTTGGGTTTG+TGG + Chr5:5959191-5959210 MsG0580024518.01.T01:intron 30.0%
!! AGTTGTTTTCTGTGAATATG+AGG + Chr5:5958312-5958331 MsG0580024518.01.T01:intron 30.0%
!! ATGAGACTTTTGATTATGAC+CGG + Chr5:5958339-5958358 MsG0580024518.01.T01:intron 30.0%
!! TTTCCTCAACCTTTGATTTT+TGG + Chr5:5961271-5961290 MsG0580024518.01.T01:intron 30.0%
!!! GAGTTGATTTGATTTTTCGT+TGG + Chr5:5961033-5961052 MsG0580024518.01.T01:intron 30.0%
!!! GTCCAATTTTATTTCTGAAC+AGG - Chr5:5960783-5960802 None:intergenic 30.0%
!!! TAAATTTTTTTGGACTTGGG+GGG - Chr5:5959670-5959689 None:intergenic 30.0%
!!! TTGCTACTTTTATGAAGTGA+AGG - Chr5:5960757-5960776 None:intergenic 30.0%
!!! TTTCAGGTTGTTATTTTGGT+GGG + Chr5:5959405-5959424 MsG0580024518.01.T01:CDS 30.0%
!!! TTTTCAGGTTGTTATTTTGG+TGG + Chr5:5959404-5959423 MsG0580024518.01.T01:CDS 30.0%
AAATAGGATTTGAGTCCAGA+TGG + Chr5:5959962-5959981 MsG0580024518.01.T01:intron 35.0%
AATCGCAACTTCGTGAAATT+AGG - Chr5:5959584-5959603 None:intergenic 35.0%
ACAAACAATGTAGTCTACAG+CGG - Chr5:5960212-5960231 None:intergenic 35.0%
AGCTATTCCATTACTAGATG+TGG - Chr5:5960405-5960424 None:intergenic 35.0%
ATCGCAACTTCGTGAAATTA+GGG - Chr5:5959583-5959602 None:intergenic 35.0%
ATCGCAACTTTGTGAAAGTT+AGG + Chr5:5959824-5959843 MsG0580024518.01.T01:intron 35.0%
ATTCTTATTGGAAGGATGAG+AGG + Chr5:5958451-5958470 MsG0580024518.01.T01:CDS 35.0%
ATTGATCTCATCACCTTATC+AGG - Chr5:5958642-5958661 None:intergenic 35.0%
CCATATGTCGATGAAAAACT+CGG + Chr5:5961538-5961557 MsG0580024518.01.T01:CDS 35.0%
GAGAAAGAAAGAAATGAGCT+TGG + Chr5:5959431-5959450 MsG0580024518.01.T01:CDS 35.0%
GCAGAAAAGAAAACCTCAAA+TGG - Chr5:5959091-5959110 None:intergenic 35.0%
GGATCATCATTCTTATTGGA+AGG + Chr5:5958443-5958462 MsG0580024518.01.T01:CDS 35.0%
GGATTGAATCAACAAAGAAC+TGG + Chr5:5958148-5958167 MsG0580024518.01.T01:CDS 35.0%
GGCATTCTTCTATTCAGAAA+AGG + Chr5:5960575-5960594 MsG0580024518.01.T01:intron 35.0%
GTTTGACCAAGTTCTTGAAT+AGG - Chr5:5959023-5959042 None:intergenic 35.0%
TAAGAATGATGATCCAACTC+AGG - Chr5:5958438-5958457 None:intergenic 35.0%
TACTAACAACAATGGCAACA+TGG + Chr5:5960252-5960271 MsG0580024518.01.T01:CDS 35.0%
TCGCAACTTTGTGAAAGTTA+GGG + Chr5:5959825-5959844 MsG0580024518.01.T01:intron 35.0%
TCTAAACCACATTTGGAGAA+TGG - Chr5:5960725-5960744 None:intergenic 35.0%
TCTTGAAACATAGCCTGATA+TGG + Chr5:5959517-5959536 MsG0580024518.01.T01:intron 35.0%
TGAATGGTATTCTCATCGAT+TGG + Chr5:5957229-5957248 MsG0580024518.01.T01:CDS 35.0%
TGATAAGGTGATGAGATCAA+TGG + Chr5:5958641-5958660 MsG0580024518.01.T01:CDS 35.0%
TGCTACAGTTGCAAAACTTA+GGG - Chr5:5959640-5959659 None:intergenic 35.0%
TGTCAAAAGAGTTCCTGATA+AGG + Chr5:5958626-5958645 MsG0580024518.01.T01:CDS 35.0%
TTAGGGAAAAGATCTTTGAG+AGG - Chr5:5960121-5960140 None:intergenic 35.0%
TTGGTGAAATCAGAAAAAGG+TGG + Chr5:5959450-5959469 MsG0580024518.01.T01:CDS 35.0%
TTTCTATTAATCAGTAGGGG+AGG - Chr5:5958248-5958267 None:intergenic 35.0%
! AGCTTGGTGAAATCAGAAAA+AGG + Chr5:5959447-5959466 MsG0580024518.01.T01:CDS 35.0%
! CAACAGTTTTCGAATTTGCA+AGG - Chr5:5957609-5957628 None:intergenic 35.0%
! CTTTCACAAAGTTGCGATTT+TGG - Chr5:5959822-5959841 None:intergenic 35.0%
! GTTTTGTGAATCTCAAAGCA+TGG - Chr5:5959001-5959020 None:intergenic 35.0%
! TTTTGCAACTGTAGCAGTTT+TGG + Chr5:5959644-5959663 MsG0580024518.01.T01:intron 35.0%
!! TCAAATGGACTGCTATGAAA+CGG - Chr5:5959076-5959095 None:intergenic 35.0%
!! TCAATGGATTGTAGTCTTAC+TGG - Chr5:5959485-5959504 None:intergenic 35.0%
!! TGGCAGTGTTTTTGTGAATT+TGG + Chr5:5958847-5958866 MsG0580024518.01.T01:intron 35.0%
!! TGTTTTTGTGAATTTGGCTG+TGG + Chr5:5958853-5958872 MsG0580024518.01.T01:intron 35.0%
!!! AGAACTTGGTTTTGGTCAAT+TGG + Chr5:5958827-5958846 MsG0580024518.01.T01:intron 35.0%
!!! CCCTACTTTTTACTCTAGAT+TGG + Chr5:5957256-5957275 MsG0580024518.01.T01:CDS 35.0%
!!! GCCTTTTCAGGTTGTTATTT+TGG + Chr5:5959401-5959420 MsG0580024518.01.T01:CDS 35.0%
!!! TTCAGGTTGTTATTTTGGTG+GGG + Chr5:5959406-5959425 MsG0580024518.01.T01:CDS 35.0%
AACAAAGAACTGGGGTAAGT+AGG + Chr5:5958158-5958177 MsG0580024518.01.T01:intron 40.0%
AACATCAAACCCACTTCATG+AGG - Chr5:5960019-5960038 None:intergenic 40.0%
ACAGTAGAATAGGTGGGAAT+TGG + Chr5:5960813-5960832 MsG0580024518.01.T01:intron 40.0%
ACATACCTCTATGTTGCATC+GGG + Chr5:5960064-5960083 MsG0580024518.01.T01:CDS 40.0%
ACCTGTCGTCTCAAAAGAAT+TGG - Chr5:5958735-5958754 None:intergenic 40.0%
ACGAATTCTTAATGCTACGC+TGG + Chr5:5958407-5958426 MsG0580024518.01.T01:CDS 40.0%
ACTGCTGTATCGAGTGAAAT+GGG + Chr5:5957890-5957909 MsG0580024518.01.T01:intron 40.0%
ATCGGGAGAAATATATGGAG+GGG + Chr5:5960081-5960100 MsG0580024518.01.T01:CDS 40.0%
ATGGTTGTGGACAGTAGAAT+AGG + Chr5:5960803-5960822 MsG0580024518.01.T01:intron 40.0%
ATTAGAAATAGGTGGGAGAG+CGG + Chr5:5960494-5960513 MsG0580024518.01.T01:intron 40.0%
ATTTGAGTCCAGATGGAGAA+AGG + Chr5:5959969-5959988 MsG0580024518.01.T01:CDS 40.0%
CAACTACAGCATCTGTTATC+TGG - Chr5:5958383-5958402 None:intergenic 40.0%
CACATACCTCTATGTTGCAT+CGG + Chr5:5960063-5960082 MsG0580024518.01.T01:CDS 40.0%
CATCGGGAGAAATATATGGA+GGG + Chr5:5960080-5960099 MsG0580024518.01.T01:CDS 40.0%
CCAAATGTGGTTTAGACCAT+AGG + Chr5:5960729-5960748 MsG0580024518.01.T01:intron 40.0%
CCAGACAAAACAAACTTGCA+GGG + Chr5:5957720-5957739 MsG0580024518.01.T01:intron 40.0%
CCTATGGTCTAAACCACATT+TGG - Chr5:5960732-5960751 None:intergenic 40.0%
CGCAACTTTGTGAAAGTTAG+GGG + Chr5:5959826-5959845 MsG0580024518.01.T01:intron 40.0%
CTACAGTTGCAAAACTTAGG+GGG - Chr5:5959638-5959657 None:intergenic 40.0%
CTGCTACAGTTGCAAAACTT+AGG - Chr5:5959641-5959660 None:intergenic 40.0%
GAAACTTACGAGCATAATCG+CGG - Chr5:5957462-5957481 None:intergenic 40.0%
GATTATTCTGTTAGGAAGCG+TGG + Chr5:5960439-5960458 MsG0580024518.01.T01:intron 40.0%
GCAACTTTGTGAAAGTTAGG+GGG + Chr5:5959827-5959846 MsG0580024518.01.T01:intron 40.0%
GCTACAGTTGCAAAACTTAG+GGG - Chr5:5959639-5959658 None:intergenic 40.0%
GGATTGTCCACATCTAGTAA+TGG + Chr5:5960395-5960414 MsG0580024518.01.T01:intron 40.0%
GTGCTAAGCTTCTTTGCATT+TGG - Chr5:5961370-5961389 None:intergenic 40.0%
GTTGCATCGGGAGAAATATA+TGG + Chr5:5960076-5960095 MsG0580024518.01.T01:CDS 40.0%
GTTTCATAGCAGTCCATTTG+AGG + Chr5:5959075-5959094 MsG0580024518.01.T01:CDS 40.0%
TATTATGGATGCAGTGACAG+AGG + Chr5:5957436-5957455 MsG0580024518.01.T01:CDS 40.0%
TCCATATATCAATGGGTGCA+CGG - Chr5:5957396-5957415 None:intergenic 40.0%
TCGCAACTTCGTGAAATTAG+GGG - Chr5:5959582-5959601 None:intergenic 40.0%
TGATGACCATTCTCCAAATG+TGG + Chr5:5960716-5960735 MsG0580024518.01.T01:intron 40.0%
TGTTACGAGAATGCAGAAGA+TGG + Chr5:5959046-5959065 MsG0580024518.01.T01:CDS 40.0%
TTGGGACACGCATTGTATAT+GGG - Chr5:5958674-5958693 None:intergenic 40.0%
TTGTGAATTTGGCTGTGGTA+AGG + Chr5:5958858-5958877 MsG0580024518.01.T01:intron 40.0%
TTGTGGACAGTAGAATAGGT+GGG + Chr5:5960807-5960826 MsG0580024518.01.T01:intron 40.0%
TTTGTGGTGTGTTGTGTTAG+TGG + Chr5:5957938-5957957 MsG0580024518.01.T01:intron 40.0%
! AATCGGGTTCTGATTTCCTT+GGG - Chr5:5958692-5958711 None:intergenic 40.0%
! CCGAGTTTTTCATCGACATA+TGG - Chr5:5961541-5961560 None:intergenic 40.0%
! GTTTTTGTAGCTCGTCATCA+AGG - Chr5:5958959-5958978 None:intergenic 40.0%
! TAATCGGGTTCTGATTTCCT+TGG - Chr5:5958693-5958712 None:intergenic 40.0%
!! AAGCTTAGCACACTTTTTGC+GGG + Chr5:5961379-5961398 MsG0580024518.01.T01:CDS 40.0%
!! GAAGCTTAGCACACTTTTTG+CGG + Chr5:5961378-5961397 MsG0580024518.01.T01:CDS 40.0%
!! GCACGAGAAAGTTGATTTTG+AGG - Chr5:5959232-5959251 None:intergenic 40.0%
!! TTATGAAGTGAAGGTGCCTA+TGG - Chr5:5960748-5960767 None:intergenic 40.0%
!! TTGTTGATTCAATCCTCCAC+TGG - Chr5:5958143-5958162 None:intergenic 40.0%
!!! CCTGCAAGTTTGTTTTGTCT+GGG - Chr5:5957722-5957741 None:intergenic 40.0%
!!! TCAGGTTGTTATTTTGGTGG+GGG + Chr5:5959407-5959426 MsG0580024518.01.T01:CDS 40.0%
AACATGGCCAAGATTCTAGC+TGG + Chr5:5960268-5960287 MsG0580024518.01.T01:CDS 45.0%
AAGAGCTGGGAAATTCGTGA+TGG - Chr5:5961504-5961523 None:intergenic 45.0%
AAGGTTAAGGCATGCCAAAG+AGG + Chr5:5961436-5961455 MsG0580024518.01.T01:CDS 45.0%
ACCGTGCACCCATTGATATA+TGG + Chr5:5957392-5957411 MsG0580024518.01.T01:CDS 45.0%
AGCGTAGACCGAGTCAAAAT+TGG + Chr5:5959728-5959747 MsG0580024518.01.T01:intron 45.0%
AGTCTCCAACGTCAGCTTAT+TGG + Chr5:5957634-5957653 MsG0580024518.01.T01:intron 45.0%
CATATACAATGCGTGTCCCA+AGG + Chr5:5958673-5958692 MsG0580024518.01.T01:CDS 45.0%
CCCAGACAAAACAAACTTGC+AGG + Chr5:5957719-5957738 MsG0580024518.01.T01:intron 45.0%
CCTCTTACTCCTCATGAAGT+GGG + Chr5:5960007-5960026 MsG0580024518.01.T01:CDS 45.0%
CCTGAAAAGGCTAGCATATC+TGG - Chr5:5959392-5959411 None:intergenic 45.0%
CGCAACTTCGTGAAATTAGG+GGG - Chr5:5959581-5959600 None:intergenic 45.0%
CGGGATGAGAATGGAAGAAA+AGG - Chr5:5960184-5960203 None:intergenic 45.0%
CTCGATACAGCAGTCTTTCA+AGG - Chr5:5957884-5957903 None:intergenic 45.0%
CTCTCACAAACACAAGAGCT+GGG - Chr5:5961517-5961536 None:intergenic 45.0%
CTTGGGACACGCATTGTATA+TGG - Chr5:5958675-5958694 None:intergenic 45.0%
GACTGCTGTATCGAGTGAAA+TGG + Chr5:5957889-5957908 MsG0580024518.01.T01:intron 45.0%
GCATCGGGAGAAATATATGG+AGG + Chr5:5960079-5960098 MsG0580024518.01.T01:CDS 45.0%
GCATGCCAAAGAGGATTCAT+GGG + Chr5:5961445-5961464 MsG0580024518.01.T01:CDS 45.0%
GTCTCCAACGTCAGCTTATT+GGG + Chr5:5957635-5957654 MsG0580024518.01.T01:intron 45.0%
GTTGTGGACAGTAGAATAGG+TGG + Chr5:5960806-5960825 MsG0580024518.01.T01:intron 45.0%
TACCTTCGCCAGAAAGGTTA+AGG + Chr5:5961423-5961442 MsG0580024518.01.T01:CDS 45.0%
TACTTGCTTATTGCAGCCAG+TGG + Chr5:5958124-5958143 MsG0580024518.01.T01:CDS 45.0%
TCCTCTTACTCCTCATGAAG+TGG + Chr5:5960006-5960025 MsG0580024518.01.T01:CDS 45.0%
TCTCCAACGTCAGCTTATTG+GGG + Chr5:5957636-5957655 MsG0580024518.01.T01:intron 45.0%
TCTCTCACAAACACAAGAGC+TGG - Chr5:5961518-5961537 None:intergenic 45.0%
TGCCACAGGTGCAAAACTTA+GGG + Chr5:5959767-5959786 MsG0580024518.01.T01:intron 45.0%
TGGGACACGCATTGTATATG+GGG - Chr5:5958673-5958692 None:intergenic 45.0%
TTGGCATGCCTTAACCTTTC+TGG - Chr5:5961434-5961453 None:intergenic 45.0%
TTTCTCCCGATGCAACATAG+AGG - Chr5:5960072-5960091 None:intergenic 45.0%
! AATAAGAGTTTGGGATGCGC+AGG + Chr5:5959309-5959328 MsG0580024518.01.T01:intron 45.0%
! ATAAGAGTTTGGGATGCGCA+GGG + Chr5:5959310-5959329 MsG0580024518.01.T01:intron 45.0%
! TTTTGCACCTGTGGCAGTTT+TGG - Chr5:5959763-5959782 None:intergenic 45.0%
!! ACCGAGTCAAAATTGGCCTT+GGG + Chr5:5959735-5959754 MsG0580024518.01.T01:intron 45.0%
!! TTAGCACACTTTTTGCGGGA+AGG + Chr5:5961383-5961402 MsG0580024518.01.T01:CDS 45.0%
!!! CCAGATATGCTAGCCTTTTC+AGG + Chr5:5959389-5959408 MsG0580024518.01.T01:CDS 45.0%
!!! CCCTGCAAGTTTGTTTTGTC+TGG - Chr5:5957723-5957742 None:intergenic 45.0%
!!! GCCAATTCTTTTGAGACGAC+AGG + Chr5:5958731-5958750 MsG0580024518.01.T01:CDS 45.0%
!!! TTCTTTTGAGACGACAGGTG+TGG + Chr5:5958736-5958755 MsG0580024518.01.T01:intron 45.0%
!!! TGTTATTTTTTAAATTTTTT+TGG - Chr5:5959680-5959699 None:intergenic 5.0%
AACACGTGGCACCTCACTTA+GGG + Chr5:5959696-5959715 MsG0580024518.01.T01:intron 50.0%
CAATGTAGTCTACAGCGGCT+AGG - Chr5:5960207-5960226 None:intergenic 50.0%
CAGATGGAGAAAGGAAGCGA+GGG + Chr5:5959978-5959997 MsG0580024518.01.T01:CDS 50.0%
CAGTAGGGGAGGAACAAAGA+TGG - Chr5:5958237-5958256 None:intergenic 50.0%
CAGTTGCAAAACTTAGGGGG+CGG - Chr5:5959635-5959654 None:intergenic 50.0%
CCACAGGTGCAAAACTTAGG+GGG + Chr5:5959769-5959788 MsG0580024518.01.T01:intron 50.0%
CCCACTTCATGAGGAGTAAG+AGG - Chr5:5960010-5960029 None:intergenic 50.0%
CCTTCGACCAGCTAGAATCT+TGG - Chr5:5960278-5960297 None:intergenic 50.0%
CTCCAACGTCAGCTTATTGG+GGG + Chr5:5957637-5957656 MsG0580024518.01.T01:intron 50.0%
CTGCCACAGGTGCAAAACTT+AGG + Chr5:5959766-5959785 MsG0580024518.01.T01:intron 50.0%
GCCACAGGTGCAAAACTTAG+GGG + Chr5:5959768-5959787 MsG0580024518.01.T01:intron 50.0%
GCTCTCCCATGAATCCTCTT+TGG - Chr5:5961453-5961472 None:intergenic 50.0%
GGAGAATGGTCATCACTCCT+TGG - Chr5:5960711-5960730 None:intergenic 50.0%
GGCATGCCAAAGAGGATTCA+TGG + Chr5:5961444-5961463 MsG0580024518.01.T01:CDS 50.0%
GGGACACGCATTGTATATGG+GGG - Chr5:5958672-5958691 None:intergenic 50.0%
GGTTTGATGTTACGCGCACT+TGG + Chr5:5960028-5960047 MsG0580024518.01.T01:CDS 50.0%
TAACACGTGGCACCTCACTT+AGG + Chr5:5959695-5959714 MsG0580024518.01.T01:intron 50.0%
TCCAACGTCAGCTTATTGGG+GGG + Chr5:5957638-5957657 MsG0580024518.01.T01:intron 50.0%
TTGCTTATTGCAGCCAGTGG+AGG + Chr5:5958127-5958146 MsG0580024518.01.T01:CDS 50.0%
! CCAAGATTCTAGCTGGTCGA+AGG + Chr5:5960275-5960294 MsG0580024518.01.T01:CDS 50.0%
! GACCGAGTCAAAATTGGCCT+TGG + Chr5:5959734-5959753 MsG0580024518.01.T01:intron 50.0%
! TAAGAGTTTGGGATGCGCAG+GGG + Chr5:5959311-5959330 MsG0580024518.01.T01:intron 50.0%
! TACGCTGGTTGTACCTGAGT+TGG + Chr5:5958422-5958441 MsG0580024518.01.T01:CDS 50.0%
! TGCCTTAACCTTTCTGGCGA+AGG - Chr5:5961428-5961447 None:intergenic 50.0%
!! CCGAGTCAAAATTGGCCTTG+GGG + Chr5:5959736-5959755 MsG0580024518.01.T01:intron 50.0%
!! CGAGTCAAAATTGGCCTTGG+GGG + Chr5:5959737-5959756 MsG0580024518.01.T01:intron 50.0%
!!! CCCCAAGGCCAATTTTGACT+CGG - Chr5:5959739-5959758 None:intergenic 50.0%
!!! TTTTGCGGGAAGGCATCAGA+TGG + Chr5:5961393-5961412 MsG0580024518.01.T01:CDS 50.0%
AACGTCAGCTTATTGGGGGG+GGG + Chr5:5957641-5957660 MsG0580024518.01.T01:intron 55.0%
CAACGTCAGCTTATTGGGGG+GGG + Chr5:5957640-5957659 MsG0580024518.01.T01:intron 55.0%
CAGGTGCAAAACTTAGGGGG+CGG + Chr5:5959772-5959791 MsG0580024518.01.T01:intron 55.0%
CCAACGTCAGCTTATTGGGG+GGG + Chr5:5957639-5957658 MsG0580024518.01.T01:intron 55.0%
CCAGATGGAGAAAGGAAGCG+AGG + Chr5:5959977-5959996 MsG0580024518.01.T01:CDS 55.0%
CCTCGCTTCCTTTCTCCATC+TGG - Chr5:5959980-5959999 None:intergenic 55.0%
CGTCCAGGTCTCATCTCATC+TGG - Chr5:5961475-5961494 None:intergenic 55.0%
CTGGCATACCTTCGCCAGAA+AGG + Chr5:5961417-5961436 MsG0580024518.01.T01:CDS 55.0%
GAGCCAGATGAGATGAGACC+TGG + Chr5:5961469-5961488 MsG0580024518.01.T01:CDS 55.0%
GGTCATCACTCCTTGGCAGA+GGG - Chr5:5960704-5960723 None:intergenic 55.0%
GTGCGTGAGCAGATGTCGAA+TGG + Chr5:5958100-5958119 MsG0580024518.01.T01:CDS 55.0%
TCGTGATGGTCATCTCGTCC+AGG - Chr5:5961490-5961509 None:intergenic 55.0%
TGGTCATCACTCCTTGGCAG+AGG - Chr5:5960705-5960724 None:intergenic 55.0%
TGTAGTCTACAGCGGCTAGG+CGG - Chr5:5960204-5960223 None:intergenic 55.0%
! CCCCCTAAGTTTTGCACCTG+TGG - Chr5:5959772-5959791 None:intergenic 55.0%
!! TCCTTGGCAGAGGGCATTGT+GGG - Chr5:5960695-5960714 None:intergenic 55.0%
ACGTCAGCTTATTGGGGGGG+GGG + Chr5:5957642-5957661 MsG0580024518.01.T01:intron 60.0%
CCCCCCCAATAAGCTGACGT+TGG - Chr5:5957642-5957661 None:intergenic 60.0%
CTGACGTGGCACCCTAAGTG+AGG - Chr5:5959710-5959729 None:intergenic 60.0%
GTAGTCTACAGCGGCTAGGC+GGG - Chr5:5960203-5960222 None:intergenic 60.0%
TTGGGGGCCAAAACTGCCAC+AGG + Chr5:5959753-5959772 MsG0580024518.01.T01:intron 60.0%
! TGGGAGAGCGGTTAGCTGTG+TGG + Chr5:5960506-5960525 MsG0580024518.01.T01:intron 60.0%
!! CGGGAAGGCATCAGATGGAC+TGG + Chr5:5961398-5961417 MsG0580024518.01.T01:CDS 60.0%
!! CTCCTTGGCAGAGGGCATTG+TGG - Chr5:5960696-5960715 None:intergenic 60.0%
!! TGACTCGGTCTACGCTGACG+TGG - Chr5:5959724-5959743 None:intergenic 60.0%
!! TGTGGCAGTTTTGGCCCCCA+AGG - Chr5:5959754-5959773 None:intergenic 60.0%
GCCCACAATGCCCTCTGCCA+AGG + Chr5:5960691-5960710 MsG0580024518.01.T01:intron 65.0%
GCGGCTAGGCGGGATGAGAA+TGG - Chr5:5960193-5960212 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 5957215 5961579 5957215 ID=MsG0580024518.01;Name=MsG0580024518.01
Chr5 mRNA 5957215 5961579 5957215 ID=MsG0580024518.01.T01;Parent=MsG0580024518.01;Name=MsG0580024518.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0|0|1|1|1|9|0|455
Chr5 exon 5957215 5957277 5957215 ID=MsG0580024518.01.T01:exon:19131;Parent=MsG0580024518.01.T01
Chr5 exon 5957382 5957472 5957382 ID=MsG0580024518.01.T01:exon:19132;Parent=MsG0580024518.01.T01
Chr5 exon 5958095 5958171 5958095 ID=MsG0580024518.01.T01:exon:19133;Parent=MsG0580024518.01.T01
Chr5 exon 5958384 5958472 5958384 ID=MsG0580024518.01.T01:exon:19134;Parent=MsG0580024518.01.T01
Chr5 exon 5958563 5958752 5958563 ID=MsG0580024518.01.T01:exon:19135;Parent=MsG0580024518.01.T01
Chr5 exon 5958915 5959096 5958915 ID=MsG0580024518.01.T01:exon:19136;Parent=MsG0580024518.01.T01
Chr5 exon 5959382 5959484 5959382 ID=MsG0580024518.01.T01:exon:19137;Parent=MsG0580024518.01.T01
Chr5 exon 5959968 5960296 5959968 ID=MsG0580024518.01.T01:exon:19138;Parent=MsG0580024518.01.T01
Chr5 exon 5961336 5961579 5961336 ID=MsG0580024518.01.T01:exon:19139;Parent=MsG0580024518.01.T01
Chr5 CDS 5957215 5957277 5957215 ID=MsG0580024518.01.T01:cds;Parent=MsG0580024518.01.T01
Chr5 CDS 5957382 5957472 5957382 ID=MsG0580024518.01.T01:cds;Parent=MsG0580024518.01.T01
Chr5 CDS 5958095 5958171 5958095 ID=MsG0580024518.01.T01:cds;Parent=MsG0580024518.01.T01
Chr5 CDS 5958384 5958472 5958384 ID=MsG0580024518.01.T01:cds;Parent=MsG0580024518.01.T01
Chr5 CDS 5958563 5958752 5958563 ID=MsG0580024518.01.T01:cds;Parent=MsG0580024518.01.T01
Chr5 CDS 5958915 5959096 5958915 ID=MsG0580024518.01.T01:cds;Parent=MsG0580024518.01.T01
Chr5 CDS 5959382 5959484 5959382 ID=MsG0580024518.01.T01:cds;Parent=MsG0580024518.01.T01
Chr5 CDS 5959968 5960296 5959968 ID=MsG0580024518.01.T01:cds;Parent=MsG0580024518.01.T01
Chr5 CDS 5961336 5961579 5961336 ID=MsG0580024518.01.T01:cds;Parent=MsG0580024518.01.T01
Gene Sequence

>MsG0580024518.01.T01

ATGCTTTCTGATCTTGAATGGTATTCTCATCGATTGGTTCACCCTACTTTTTACTCTAGATTGGATGGGCATTACCGTGCACCCATTGATATATGGAAATCTAAATTGTCTAAATATTATTATGGATGCAGTGACAGAGGCCGCGATTATGCTCCTGCTGTGCGTGAGCAGATGTCGAATGGCTACTTGCTTATTGCAGCCAGTGGAGGATTGAATCAACAAAGAACTGGGATAACAGATGCTGTAGTTGTTGCACGAATTCTTAATGCTACGCTGGTTGTACCTGAGTTGGATCATCATTCTTATTGGAAGGATGAGAGTGACTTTATCAATATTTTCGATGTTGATTGGTTCATTTCTTATCTCGCAAAAGACGTCACTATTGTCAAAAGAGTTCCTGATAAGGTGATGAGATCAATGGAAAAACCCCCATATACAATGCGTGTCCCAAGGAAATCAGAACCCGATTATTATCTTGATCAAGTTTTGCCAATTCTTTTGAGACGACAGGTTGTACAATTGACGAAGTTTGACTTTAGACTTGCGAATCACCTTGATGACGAGCTACAAAAACTACGATGCCGTGTTAATTTCCATGCTTTGAGATTCACAAAACCTATTCAAGAACTTGGTCAAACAATTGTTACGAGAATGCAGAAGATGGCTCACCGTTTCATAGCAGTCCATTTGAGATTTGAACCAGATATGCTAGCCTTTTCAGGTTGTTATTTTGGTGGGGGAGAGAAAGAAAGAAATGAGCTTGGTGAAATCAGAAAAAGGTGGACAACATTACCAGATTTGAGTCCAGATGGAGAAAGGAAGCGAGGGAAATGTCCTCTTACTCCTCATGAAGTGGGTTTGATGTTACGCGCACTTGGTTTTACAAATGACACATACCTCTATGTTGCATCGGGAGAAATATATGGAGGGGACGAGACTATGCAGCCTCTCAAAGATCTTTTCCCTAACATCTATACAAAGGAGATGCTTGCTGATGAAGAGCTGAAACCTTTTCTTCCATTCTCATCCCGCCTAGCCGCTGTAGACTACATTGTTTGTGATGAAAGCGATGTATTTGTTACTAACAACAATGGCAACATGGCCAAGATTCTAGCTGGTCGAAGGAGATATATGGGTCACAAAAGAACAATTAGACCAAATGCAAAGAAGCTTAGCACACTTTTTGCGGGAAGGCATCAGATGGACTGGCATACCTTCGCCAGAAAGGTTAAGGCATGCCAAAGAGGATTCATGGGAGAGCCAGATGAGATGAGACCTGGACGAGATGACCATCACGAATTTCCCAGCTCTTGTGTTTGTGAGAGACCATATGTCGATGAAAAACTCGGTACAAAGATTGATACCTGA
Protein sequence

>MsG0580024518.01.T01

MLSDLEWYSHRLVHPTFYSRLDGHYRAPIDIWKSKLSKYYYGCSDRGRDYAPAVREQMSNGYLLIAASGGLNQQRTGITDAVVVARILNATLVVPELDHHSYWKDESDFINIFDVDWFISYLAKDVTIVKRVPDKVMRSMEKPPYTMRVPRKSEPDYYLDQVLPILLRRQVVQLTKFDFRLANHLDDELQKLRCRVNFHALRFTKPIQELGQTIVTRMQKMAHRFIAVHLRFEPDMLAFSGCYFGGGEKERNELGEIRKRWTTLPDLSPDGERKRGKCPLTPHEVGLMLRALGFTNDTYLYVASGEIYGGDETMQPLKDLFPNIYTKEMLADEELKPFLPFSSRLAAVDYIVCDESDVFVTNNNGNMAKILAGRRRYMGHKRTIRPNAKKLSTLFAGRHQMDWHTFARKVKACQRGFMGEPDEMRPGRDDHHEFPSSCVCERPYVDEKLGTKIDT*