AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024525.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024525.01.T01 MTR_5g012770 84.586 532 25 5 1 498 1 509 0.0 872
MsG0580024525.01.T01 MTR_4g100810 72.854 501 94 4 20 490 8 496 0.0 749
MsG0580024525.01.T01 MTR_3g115220 50.501 499 195 7 29 484 4 493 2.02e-164 478
MsG0580024525.01.T01 MTR_5g099010 51.255 478 171 8 49 484 43 500 3.27e-162 472
MsG0580024525.01.T01 MTR_4g019210 38.584 438 208 11 93 485 202 623 6.79e-85 275
MsG0580024525.01.T01 MTR_1g031590 36.508 441 207 12 97 483 125 546 1.76e-82 266
MsG0580024525.01.T01 MTR_4g084570 36.854 426 219 10 112 490 132 554 1.91e-79 258
MsG0580024525.01.T01 MTR_4g082310 39.286 420 197 11 120 493 92 499 1.91e-79 257
MsG0580024525.01.T01 MTR_5g042200 39.234 418 198 11 121 493 81 487 2.69e-79 256
MsG0580024525.01.T01 MTR_5g081690 36.136 440 214 14 95 486 93 513 1.14e-78 255
MsG0580024525.01.T01 MTR_3g005340 36.830 429 225 9 98 485 123 546 2.24e-78 256
MsG0580024525.01.T01 MTR_6g016015 39.655 406 198 10 118 482 108 507 6.85e-78 253
MsG0580024525.01.T01 MTR_4g110030 38.424 406 203 10 118 482 109 508 9.07e-77 250
MsG0580024525.01.T01 MTR_4g125460 35.068 442 222 10 90 484 56 479 5.65e-76 247
MsG0580024525.01.T01 MTR_2g059350 38.480 408 200 11 118 482 108 507 7.58e-76 248
MsG0580024525.01.T01 MTR_4g125460 35.520 442 220 11 90 484 195 618 1.54e-74 247
MsG0580024525.01.T01 MTR_5g064620 38.250 400 195 10 95 458 84 467 7.32e-74 243
MsG0580024525.01.T01 MTR_5g059260 39.782 367 152 8 126 438 158 509 3.67e-73 243
MsG0580024525.01.T01 MTR_3g099480 37.157 401 205 8 97 462 115 503 3.89e-72 239
MsG0580024525.01.T01 MTR_3g086570 33.603 494 264 14 40 483 68 547 3.96e-72 239
MsG0580024525.01.T01 MTR_2g016470 34.541 414 201 11 109 454 174 585 1.56e-70 236
MsG0580024525.01.T01 MTR_3g096020 34.534 472 256 11 4 438 70 525 1.99e-69 233
MsG0580024525.01.T01 MTR_4g132590 33.118 465 232 13 92 483 34 492 2.83e-68 227
MsG0580024525.01.T01 MTR_4g132590 33.118 465 232 13 92 483 133 591 4.80e-67 226
MsG0580024525.01.T01 MTR_5g032100 33.040 454 228 15 96 484 60 502 1.24e-62 213
MsG0580024525.01.T01 MTR_3g026650 34.434 424 233 11 96 483 142 556 1.60e-61 211
MsG0580024525.01.T01 MTR_3g100310 34.028 432 211 16 117 483 93 515 4.16e-59 203
MsG0580024525.01.T01 MTR_4g023030 34.499 429 238 10 96 489 202 622 5.98e-59 205
MsG0580024525.01.T01 MTR_1g102030 36.631 374 184 12 125 454 88 452 2.04e-55 194
MsG0580024525.01.T01 MTR_3g026650 35.795 352 186 7 96 414 142 486 5.90e-52 184
MsG0580024525.01.T01 MTR_3g086570 34.615 338 190 10 40 359 68 392 1.76e-49 176
MsG0580024525.01.T01 MTR_4g010990 30.952 336 182 8 125 427 75 393 1.29e-41 154
MsG0580024525.01.T01 MTR_3g026650 37.736 265 156 5 96 358 142 399 7.01e-41 151
MsG0580024525.01.T01 MTR_4g010990 30.000 320 174 8 141 427 2 304 5.20e-36 137
MsG0580024525.01.T01 MTR_7g017330 32.749 342 192 15 44 359 11 340 1.93e-32 131
MsG0580024525.01.T01 MTR_3g092590 29.091 330 216 7 44 359 7 332 1.13e-30 126
MsG0580024525.01.T01 MTR_3g092590 29.091 330 216 7 44 359 7 332 1.36e-30 125
MsG0580024525.01.T01 MTR_1g101990 36.122 263 124 10 237 464 6 259 1.69e-30 121
MsG0580024525.01.T01 MTR_2g038320 29.697 330 197 11 117 430 84 394 3.01e-28 117
MsG0580024525.01.T01 MTR_1g007390 27.679 336 219 8 44 359 7 338 1.34e-24 108
MsG0580024525.01.T01 MTR_1g101985 55.844 77 34 0 125 201 88 164 6.02e-22 93.6
MsG0580024525.01.T01 MTR_7g064210 42.742 124 58 5 246 359 26 146 1.86e-17 84.7
MsG0580024525.01.T01 MTR_1g095680 43.023 86 38 1 251 325 9 94 3.56e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024525.01.T01 AT4G16650 65.970 526 135 6 1 494 1 514 0.0 673
MsG0580024525.01.T01 AT4G16650 65.970 526 135 6 1 494 1 514 0.0 673
MsG0580024525.01.T01 AT4G38390 52.452 469 184 5 47 483 44 505 2.96e-164 476
MsG0580024525.01.T01 AT1G20550 49.388 490 198 7 49 498 24 503 1.06e-160 468
MsG0580024525.01.T01 AT1G76270 54.245 424 154 5 92 484 73 487 1.15e-158 463
MsG0580024525.01.T01 AT1G14970 39.007 423 208 11 110 485 15 434 2.72e-85 270
MsG0580024525.01.T01 AT1G14970 39.851 404 198 10 124 485 8 408 2.75e-85 269
MsG0580024525.01.T01 AT1G14970 38.053 452 228 12 81 485 108 554 8.44e-85 272
MsG0580024525.01.T01 AT2G01480 38.298 423 211 11 110 485 134 553 2.30e-82 266
MsG0580024525.01.T01 AT2G01480 40.800 375 174 9 110 438 134 506 3.85e-81 262
MsG0580024525.01.T01 AT2G37980 36.564 454 218 12 92 495 194 627 4.23e-81 265
MsG0580024525.01.T01 AT2G03280 40.199 403 194 10 121 482 84 480 5.16e-79 255
MsG0580024525.01.T01 AT1G14020 40.099 404 196 9 121 484 87 484 6.20e-79 255
MsG0580024525.01.T01 AT3G02250 39.409 406 199 10 118 482 99 498 2.75e-78 254
MsG0580024525.01.T01 AT5G15740 38.916 406 201 11 118 482 99 498 4.36e-78 253
MsG0580024525.01.T01 AT3G54100 35.811 444 225 12 92 490 190 618 3.76e-77 254
MsG0580024525.01.T01 AT1G35510 36.036 444 215 10 95 486 133 559 3.43e-75 247
MsG0580024525.01.T01 AT1G38065 38.743 382 186 9 125 465 26 400 9.15e-75 243
MsG0580024525.01.T01 AT1G38065 38.743 382 186 9 125 465 36 410 1.02e-74 243
MsG0580024525.01.T01 AT5G35570 37.273 440 201 14 97 484 225 641 8.46e-74 246
MsG0580024525.01.T01 AT1G38131 38.743 382 186 9 125 465 155 529 1.62e-73 243
MsG0580024525.01.T01 AT2G03280 37.674 430 194 11 121 482 84 507 4.91e-73 240
MsG0580024525.01.T01 AT3G26370 36.228 403 216 7 122 484 155 556 1.06e-72 240
MsG0580024525.01.T01 AT5G01100 34.633 436 222 13 96 484 190 609 5.90e-71 238
MsG0580024525.01.T01 AT5G64600 39.769 347 168 6 125 439 117 454 7.05e-71 235
MsG0580024525.01.T01 AT1G22460 39.142 373 183 9 97 437 135 495 1.15e-70 235
MsG0580024525.01.T01 AT1G04910 34.737 475 248 16 48 484 25 475 5.87e-69 229
MsG0580024525.01.T01 AT1G62330 33.181 437 216 11 94 458 192 624 2.73e-68 231
MsG0580024525.01.T01 AT1G11990 34.568 405 219 11 96 458 163 563 2.16e-67 227
MsG0580024525.01.T01 AT2G44500 34.670 424 233 10 96 483 146 561 3.82e-63 216
MsG0580024525.01.T01 AT1G29200 34.515 423 209 11 99 454 43 464 1.33e-62 212
MsG0580024525.01.T01 AT1G29200 34.515 423 209 11 99 454 43 464 1.33e-62 212
MsG0580024525.01.T01 AT4G24530 31.470 483 248 14 72 484 48 517 2.45e-62 212
MsG0580024525.01.T01 AT1G29200 34.515 423 209 11 99 454 159 580 1.08e-61 213
MsG0580024525.01.T01 AT1G11990 31.674 442 219 12 96 458 148 585 5.28e-61 211
MsG0580024525.01.T01 AT5G63390 34.043 423 237 9 96 483 133 548 2.30e-60 208
MsG0580024525.01.T01 AT5G65470 31.567 453 236 12 96 483 59 502 8.56e-60 205
MsG0580024525.01.T01 AT3G07900 34.101 434 242 10 88 485 149 574 1.40e-58 203
MsG0580024525.01.T01 AT1G29200 35.038 391 187 10 130 454 1 390 2.59e-58 199
MsG0580024525.01.T01 AT3G26370 36.364 253 140 7 90 326 120 367 2.26e-45 164
MsG0580024525.01.T01 AT2G44500 36.842 266 160 4 96 359 146 405 4.76e-41 152
MsG0580024525.01.T01 AT1G52630 28.779 344 197 6 125 437 74 400 1.54e-39 149
MsG0580024525.01.T01 AT1G52630 27.711 332 184 7 141 437 2 312 8.13e-34 131
MsG0580024525.01.T01 AT3G30300 33.333 261 153 8 112 359 90 342 6.97e-31 127
MsG0580024525.01.T01 AT3G30300 33.333 261 153 8 112 359 90 342 6.97e-31 127
MsG0580024525.01.T01 AT3G03810 33.333 255 159 6 114 359 79 331 1.76e-30 125
MsG0580024525.01.T01 AT3G03810 33.333 255 159 6 114 359 79 331 1.76e-30 125
MsG0580024525.01.T01 AT3G21190 27.744 328 189 13 125 429 90 392 9.69e-20 92.0
MsG0580024525.01.T01 AT1G51630 27.744 328 189 13 125 429 91 393 2.49e-19 90.5

Find 95 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCATGCCTTAACCTTTC+TGG 0.108482 5:+6009371 None:intergenic
GGTTTAATTTCGCTTCTTAC+TGG 0.232835 5:-6013528 MsG0580024525.01.T01:CDS
TGTTTATAATAGGAGATATA+TGG 0.246061 5:-6009478 MsG0580024525.01.T01:intron
ATTGATCTCATCACCTTATC+AGG 0.260179 5:+6012226 None:intergenic
CTTGGGACACGCATTGTATA+TGG 0.264993 5:+6012193 None:intergenic
AAATTGTCTAAATATTATTA+TGG 0.273003 5:-6013307 MsG0580024525.01.T01:CDS
CCTGAAAAGGCTAGCATATC+TGG 0.273488 5:+6011473 None:intergenic
AGTTGGATCATCATTCTTAT+TGG 0.287747 5:-6012425 MsG0580024525.01.T01:CDS
CATGACGATCTCGTGGTCTT+TGG 0.289859 5:-6013577 MsG0580024525.01.T01:CDS
CCCTCGCTTCCTTCTCCATC+TGG 0.315507 5:+6010826 None:intergenic
GTGCTAAGCTTCTTTGCATT+TGG 0.323021 5:+6009435 None:intergenic
AACTTGATCAAGATAATAAT+CGG 0.343642 5:+6012159 None:intergenic
ATAGGTAAGGCTTGGAGGTT+AGG 0.347071 5:-6013687 MsG0580024525.01.T01:CDS
ATCTCGTGGTCTTTGGTTTG+TGG 0.362348 5:-6013570 MsG0580024525.01.T01:CDS
GCTCTCCCATGAATCCTCTT+TGG 0.363004 5:+6009352 None:intergenic
GTTTGACCAAGTTCTTGAAT+AGG 0.379703 5:+6011845 None:intergenic
ACCGTGCACCAATTGATATA+TGG 0.382336 5:-6013336 MsG0580024525.01.T01:CDS
AGCTTGGTGAAATCAGAAAA+AGG 0.386962 5:-6011415 MsG0580024525.01.T01:CDS
ATCTCCTTTGTATAGATGTT+AGG 0.387929 5:+6010669 None:intergenic
ACCTGTCGTCTCAAAAGAAT+TGG 0.388497 5:+6012133 None:intergenic
TTGGGACACGCATTGTATAT+GGG 0.397785 5:+6012194 None:intergenic
TTAGATTTCCATATATCAAT+TGG 0.403180 5:+6013328 None:intergenic
GGATTGAATCAACAAAGAAC+TGG 0.404396 5:-6012588 MsG0580024525.01.T01:CDS
GGCATGCCAAAGAGGATTCA+TGG 0.413310 5:-6009358 MsG0580024525.01.T01:CDS
CCTTCGACCAGCTAGAATCT+TGG 0.414719 5:+6010530 None:intergenic
TAATCGGGTTCTGATTTCCT+TGG 0.421676 5:+6012175 None:intergenic
GTTTATAATAGGAGATATAT+GGG 0.423059 5:-6009477 MsG0580024525.01.T01:intron
TTGTTGCCTTGTGATAAAAT+AGG 0.424578 5:-6010857 MsG0580024525.01.T01:CDS
CGTCCAGGTCTCATCTCATC+TGG 0.430826 5:+6009330 None:intergenic
TTGTTGATTCAATCCTCCAC+TGG 0.432521 5:+6012596 None:intergenic
AATCGGGTTCTGATTTCCTT+GGG 0.434363 5:+6012176 None:intergenic
CCCACTTCATGAGGAGTAAG+AGG 0.434476 5:+6010797 None:intergenic
GTTTCATAGCAGTCCATTTG+AGG 0.448307 5:-6011790 MsG0580024525.01.T01:intron
ACATGCTTTCTGATCTTGAA+TGG 0.450545 5:-6013503 MsG0580024525.01.T01:CDS
TACCTTCGCCAGAAAGGTTA+AGG 0.454344 5:-6009379 MsG0580024525.01.T01:CDS
TGTTGTTTGGTAACAAAGCT+AGG 0.462226 5:+6013649 None:intergenic
ACCAAAATAACAACCTGAAA+AGG 0.486933 5:+6011460 None:intergenic
GAGAAAGAAAGAAATGAGCT+TGG 0.488177 5:-6011431 MsG0580024525.01.T01:CDS
GCTGAAATGGGTGTGAGTAT+AGG 0.488919 5:-6013705 None:intergenic
TCTCTCACAAACACAAGAGC+TGG 0.490882 5:+6009287 None:intergenic
TGCCTTAACCTTTCTGGCGA+AGG 0.491638 5:+6009377 None:intergenic
ACAAAACCTATTCAAGAACT+TGG 0.495920 5:-6011851 MsG0580024525.01.T01:CDS
GTAGTCTACAGCGGCTAGGC+GGG 0.497730 5:+6010605 None:intergenic
GCGGCTAGGCGGGATGAGAA+TGG 0.503816 5:+6010615 None:intergenic
TGTCAAAAGAGTTCCTGATA+AGG 0.507750 5:-6012239 MsG0580024525.01.T01:CDS
TGAATGGTATTCTCATCGAT+TGG 0.519424 5:-6013487 MsG0580024525.01.T01:CDS
CGGGATGAGAATGGAAGAAA+AGG 0.524026 5:+6010624 None:intergenic
CGGGAAGGCATCAGATGGAC+TGG 0.526918 5:-6009404 MsG0580024525.01.T01:CDS
TGAGTATAGGTAAGGCTTGG+AGG 0.527965 5:-6013692 MsG0580024525.01.T01:CDS
TGGGACACGCATTGTATATG+GGG 0.528406 5:+6012195 None:intergenic
GGATCATCATTCTTATTGGA+AGG 0.535696 5:-6012421 MsG0580024525.01.T01:CDS
ACTTGATCAAGATAATAATC+GGG 0.536000 5:+6012160 None:intergenic
TCAAATGGACTGCTATGAAA+CGG 0.539398 5:+6011792 None:intergenic
TCCTCTTACTCCTCATGAAG+TGG 0.539526 5:-6010798 MsG0580024525.01.T01:CDS
CCTCTTACTCCTCATGAAGT+GGG 0.541378 5:-6010797 MsG0580024525.01.T01:intron
TTGCTTATTGCAGCCAGTGG+AGG 0.542071 5:-6012609 MsG0580024525.01.T01:CDS
GAGCCAGATGAGATGAGACC+TGG 0.545176 5:-6009333 MsG0580024525.01.T01:CDS
TGATAAGGTGATGAGATCAA+TGG 0.547039 5:-6012224 MsG0580024525.01.T01:CDS
CTGGCATACCTTCGCCAGAA+AGG 0.547774 5:-6009385 MsG0580024525.01.T01:CDS
AAATAGGATTTGAGTCCAGA+TGG 0.553327 5:-6010841 MsG0580024525.01.T01:CDS
TCCAGATGGAGAAGGAAGCG+AGG 0.560601 5:-6010827 MsG0580024525.01.T01:CDS
CTCTCACAAACACAAGAGCT+GGG 0.560650 5:+6009288 None:intergenic
AACATGGCCAAGATTCTAGC+TGG 0.561681 5:-6010537 MsG0580024525.01.T01:CDS
GCATGCCAAAGAGGATTCAT+GGG 0.563632 5:-6009357 MsG0580024525.01.T01:CDS
TGTTACGAGAATGCAGAAGA+TGG 0.570027 5:-6011819 MsG0580024525.01.T01:CDS
TCCATATATCAATTGGTGCA+CGG 0.574106 5:+6013335 None:intergenic
TACTTGCTTATTGCAGCCAG+TGG 0.574430 5:-6012612 MsG0580024525.01.T01:CDS
TCGTGATGGTCATCTCGTCC+AGG 0.574549 5:+6009315 None:intergenic
CCAGATGGAGAAGGAAGCGA+GGG 0.581296 5:-6010826 MsG0580024525.01.T01:CDS
AATGGGTGTGAGTATAGGTA+AGG 0.584194 5:-6013700 MsG0580024525.01.T01:CDS
ATTCTTATTGGAAGGATGAG+AGG 0.587254 5:-6012413 MsG0580024525.01.T01:intron
GTGTGAGTATAGGTAAGGCT+TGG 0.588001 5:-6013695 MsG0580024525.01.T01:CDS
ACGAATTCTTAATGCTACGC+TGG 0.588010 5:-6012457 MsG0580024525.01.T01:CDS
TACTAACAACAATGGCAACA+TGG 0.600721 5:-6010553 MsG0580024525.01.T01:CDS
GATTGAATCAACAAAGAACT+GGG 0.605354 5:-6012587 MsG0580024525.01.T01:CDS
CCAAGATTCTAGCTGGTCGA+AGG 0.607748 5:-6010530 MsG0580024525.01.T01:intron
AACATCAAACCCACTTCATG+AGG 0.611141 5:+6010788 None:intergenic
TACGCTGGTTGTACCTGAGT+TGG 0.611847 5:-6012442 MsG0580024525.01.T01:CDS
CAATGTAGTCTACAGCGGCT+AGG 0.614499 5:+6010601 None:intergenic
GGGACACGCATTGTATATGG+GGG 0.616024 5:+6012196 None:intergenic
CATATACAATGCGTGTCCCA+AGG 0.618244 5:-6012192 MsG0580024525.01.T01:CDS
GTATTTGTTACTAACAACAA+TGG 0.620898 5:-6010561 MsG0580024525.01.T01:CDS
TGTAGTCTACAGCGGCTAGG+CGG 0.622536 5:+6010604 None:intergenic
TAAGAATGATGATCCAACTC+AGG 0.623565 5:+6012429 None:intergenic
AAGGTTAAGGCATGCCAAAG+AGG 0.627153 5:-6009366 MsG0580024525.01.T01:CDS
GTTAGGAAAAGATCTTTGAG+AGG 0.641793 5:+6010686 None:intergenic
GTGCGTGAGCAGATGTCGAA+TGG 0.645428 5:-6012636 MsG0580024525.01.T01:CDS
TATTATGGATGCAGTGACAG+AGG 0.653385 5:-6013292 MsG0580024525.01.T01:CDS
TCAAAGCATGGAAATTAACA+CGG 0.662029 5:+6011879 None:intergenic
AAGAGCTGGGAAATTCGTGA+TGG 0.664397 5:+6009301 None:intergenic
GATTTGAGTCCAGATGGAGA+AGG 0.669642 5:-6010835 MsG0580024525.01.T01:CDS
AGAACAACATGACGATCTCG+TGG 0.676268 5:-6013584 MsG0580024525.01.T01:CDS
GAAACTTACGAGCATAATCG+CGG 0.695542 5:+6013269 None:intergenic
ATTGAATCAACAAAGAACTG+GGG 0.728844 5:-6012586 MsG0580024525.01.T01:intron
ACAAACAATGTAGTCTACAG+CGG 0.728868 5:+6010596 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTGTCTAAATATTATTA+TGG - Chr5:6009637-6009656 MsG0580024525.01.T01:intron 10.0%
!!! TAGTTTTTTTTTTTTCTTAT+GGG + Chr5:6011748-6011767 None:intergenic 10.0%
!!! TTTTGATTTATATTAGAAAT+AGG - Chr5:6012623-6012642 MsG0580024525.01.T01:CDS 10.0%
!! AAAATTTAAAAAATAACACG+TGG - Chr5:6011823-6011842 MsG0580024525.01.T01:CDS 15.0%
!! ATTGTTAATTGCAATTAAAA+AGG + Chr5:6011421-6011440 None:intergenic 15.0%
!! TATTTGTTTACTTATACTTT+GGG - Chr5:6011265-6011284 MsG0580024525.01.T01:intron 15.0%
!!! AGTTTTTTTTTTTTCTTATG+GGG + Chr5:6011747-6011766 None:intergenic 15.0%
!!! GCTTGAAATTTTTATTTTAA+TGG - Chr5:6010844-6010863 MsG0580024525.01.T01:CDS 15.0%
!!! GTAGTTTTTTTTTTTTCTTA+TGG + Chr5:6011749-6011768 None:intergenic 15.0%
!!! TAGTTATTTTGATTTCTTTT+AGG - Chr5:6009576-6009595 MsG0580024525.01.T01:intron 15.0%
!!! TTTTAAATTTTTTTGGACTT+GGG + Chr5:6011814-6011833 None:intergenic 15.0%
!!! TTTTGTAGTTTTTTTTCTTA+GGG - Chr5:6011935-6011954 MsG0580024525.01.T01:CDS 15.0%
!!! TTTTTAAATTTTTTTGGACT+TGG + Chr5:6011815-6011834 None:intergenic 15.0%
!! AAATAAAAATTTCAAGCAAG+TGG + Chr5:6010841-6010860 None:intergenic 20.0%
!! AACTTGATCAAGATAATAAT+CGG + Chr5:6010788-6010807 None:intergenic 20.0%
!! AATGTTAGAAATAAGAGTTT+GGG - Chr5:6011382-6011401 MsG0580024525.01.T01:intron 20.0%
!! ACAAATCTTGTATGATATAA+AGG - Chr5:6012990-6013009 MsG0580024525.01.T01:intron 20.0%
!! ATAAATGATCTTCTTAAGAA+TGG - Chr5:6010218-6010237 MsG0580024525.01.T01:intron 20.0%
!! CATATAAGAATCAAGTTTAA+TGG - Chr5:6010579-6010598 MsG0580024525.01.T01:CDS 20.0%
!! CATTAAACTTGATTCTTATA+TGG + Chr5:6010581-6010600 None:intergenic 20.0%
!! GATTTATATTAGAAATAGGT+GGG - Chr5:6012627-6012646 MsG0580024525.01.T01:CDS 20.0%
!! GTATTTGTTTACTTATACTT+TGG - Chr5:6011264-6011283 MsG0580024525.01.T01:intron 20.0%
!! GTTTATAATAGGAGATATAT+GGG - Chr5:6013467-6013486 MsG0580024525.01.T01:CDS 20.0%
!! TAAATGATCTTCTTAAGAAT+GGG - Chr5:6010219-6010238 MsG0580024525.01.T01:intron 20.0%
!! TAATTAGTGTAATTCATAGT+TGG - Chr5:6009711-6009730 MsG0580024525.01.T01:intron 20.0%
!! TACAATAATGTGATAGAAAT+AGG + Chr5:6010005-6010024 None:intergenic 20.0%
!! TATCCTCAATTATTAACTAT+TGG + Chr5:6013097-6013116 None:intergenic 20.0%
!! TGATTTATATTAGAAATAGG+TGG - Chr5:6012626-6012645 MsG0580024525.01.T01:CDS 20.0%
!! TGTTCGTTTATTACATAAAT+GGG - Chr5:6012470-6012489 MsG0580024525.01.T01:CDS 20.0%
!! TGTTTATAATAGGAGATATA+TGG - Chr5:6013466-6013485 MsG0580024525.01.T01:CDS 20.0%
!! TTAGATTTCCATATATCAAT+TGG + Chr5:6009619-6009638 None:intergenic 20.0%
!! TTATGTAATAAACGAACAAA+AGG + Chr5:6012468-6012487 None:intergenic 20.0%
!! TTCAATTTCAAAACATTGTA+AGG + Chr5:6011201-6011220 None:intergenic 20.0%
!! TTGAAAAAGAATGGTAAATA+AGG + Chr5:6013129-6013148 None:intergenic 20.0%
!! TTGTTCGTTTATTACATAAA+TGG - Chr5:6012469-6012488 MsG0580024525.01.T01:CDS 20.0%
!! TTTAGATTACAACGTTAATT+AGG + Chr5:6013058-6013077 None:intergenic 20.0%
!! TTTCCAATAGTTAATAATTG+AGG - Chr5:6013091-6013110 MsG0580024525.01.T01:intron 20.0%
!!! ATTTTGATTTCTTTTAGGAT+GGG - Chr5:6009581-6009600 MsG0580024525.01.T01:intron 20.0%
!!! GTTTTGTAGTTTTTTTTCTT+AGG - Chr5:6011934-6011953 MsG0580024525.01.T01:CDS 20.0%
!!! TAACAAGTTATACTTTTCAT+AGG + Chr5:6013215-6013234 None:intergenic 20.0%
!!! TATTTTGATTTCTTTTAGGA+TGG - Chr5:6009580-6009599 MsG0580024525.01.T01:intron 20.0%
!!! TTGCATAGCAAAATAATTTT+AGG + Chr5:6012011-6012030 None:intergenic 20.0%
!!! TTTAAATTTTTTTGGACTTG+GGG + Chr5:6011813-6011832 None:intergenic 20.0%
!!! TTTGTAGTTTTTTTTCTTAG+GGG - Chr5:6011936-6011955 MsG0580024525.01.T01:CDS 20.0%
! AACTCTACAGTTTGAATATT+AGG + Chr5:6013026-6013045 None:intergenic 25.0%
! ACTTGATCAAGATAATAATC+GGG + Chr5:6010787-6010806 None:intergenic 25.0%
! AGTATGTATATCATAGATTC+AGG - Chr5:6013314-6013333 MsG0580024525.01.T01:CDS 25.0%
! ATAGTGATGATTATTCTGTT+AGG - Chr5:6012571-6012590 MsG0580024525.01.T01:intron 25.0%
! ATGACAAAGTTGAAAAAGAA+TGG + Chr5:6013138-6013157 None:intergenic 25.0%
! ATGCATTCTAAGTAAAAATC+AGG - Chr5:6011705-6011724 MsG0580024525.01.T01:intron 25.0%
! ATTGTATCATTAGAAGTCAA+TGG + Chr5:6011583-6011602 None:intergenic 25.0%
! ATTTAAACGCAATCAACAAA+AGG - Chr5:6012514-6012533 MsG0580024525.01.T01:intron 25.0%
! CAATGTTAGAAATAAGAGTT+TGG - Chr5:6011381-6011400 MsG0580024525.01.T01:intron 25.0%
! CATATTGAATGTTTCATTTG+TGG - Chr5:6010130-6010149 MsG0580024525.01.T01:intron 25.0%
! GAACAAACCAAAATACAAAA+TGG + Chr5:6010194-6010213 None:intergenic 25.0%
! GTAAGAATACAAAACTACTA+TGG - Chr5:6012436-6012455 MsG0580024525.01.T01:CDS 25.0%
! TAAAGCTTGTATATGGAATT+TGG - Chr5:6013247-6013266 MsG0580024525.01.T01:intron 25.0%
! TTCAGAAATAAAATTGGACA+TGG - Chr5:6012926-6012945 MsG0580024525.01.T01:intron 25.0%
!! CACTTCTCTTTGTTTATAAT+AGG - Chr5:6013456-6013475 MsG0580024525.01.T01:intron 25.0%
!! CACTTTCTTCTTTTCATAAT+CGG - Chr5:6010271-6010290 MsG0580024525.01.T01:intron 25.0%
!! GCTTTTTAACCAAAAATCAA+AGG + Chr5:6013426-6013445 None:intergenic 25.0%
!! GTATTTGTTACTAACAACAA+TGG - Chr5:6012383-6012402 MsG0580024525.01.T01:intron 25.0%
!! TCAAATCCTATTTTATCACA+AGG + Chr5:6012096-6012115 None:intergenic 25.0%
!! TCAATATTTTCGATGTTGAT+TGG - Chr5:6010650-6010669 MsG0580024525.01.T01:CDS 25.0%
!! TTTCATAGGAATTTTTGCTT+TGG + Chr5:6013201-6013220 None:intergenic 25.0%
!! TTTTACTTAGAATGCATATC+AGG + Chr5:6011702-6011721 None:intergenic 25.0%
!! TTTTCCTAACATCTATACAA+AGG - Chr5:6012271-6012290 MsG0580024525.01.T01:CDS 25.0%
!!! AAAAGTATAACTTGTTACAG+GGG - Chr5:6013218-6013237 MsG0580024525.01.T01:intron 25.0%
!!! CAAACTCTTATTTCTAACAT+TGG + Chr5:6011383-6011402 None:intergenic 25.0%
!!! CAAAGAGAAGTGTTTAAAAA+AGG + Chr5:6013448-6013467 None:intergenic 25.0%
!!! GAAAAGTATAACTTGTTACA+GGG - Chr5:6013217-6013236 MsG0580024525.01.T01:intron 25.0%
!!! TCCAATTTTATTTCTGAACA+GGG + Chr5:6012924-6012943 None:intergenic 25.0%
!!! TGAAAAGTATAACTTGTTAC+AGG - Chr5:6013216-6013235 MsG0580024525.01.T01:intron 25.0%
!!! TGTTGTTTCTTTTTGTTGTT+TGG + Chr5:6009311-6009330 None:intergenic 25.0%
!!! TTAAATTTTTTTGGACTTGG+GGG + Chr5:6011812-6011831 None:intergenic 25.0%
!!! TTGTAGTTTTTTTTCTTAGG+GGG - Chr5:6011937-6011956 MsG0580024525.01.T01:CDS 25.0%
AAGGTTGAGGTAAAAAAAGT+AGG + Chr5:6013407-6013426 None:intergenic 30.0%
AATAAAATTGGACATGGTTG+TGG - Chr5:6012932-6012951 MsG0580024525.01.T01:intron 30.0%
ACAAAACCTATTCAAGAACT+TGG - Chr5:6011093-6011112 MsG0580024525.01.T01:intron 30.0%
ACAAGAAATGCTATAATTGC+AGG - Chr5:6009960-6009979 MsG0580024525.01.T01:intron 30.0%
ACCAAAATAACAACCTGAAA+AGG + Chr5:6011487-6011506 None:intergenic 30.0%
ACCCTGTTCAGAAATAAAAT+TGG - Chr5:6012920-6012939 MsG0580024525.01.T01:intron 30.0%
AGTTGGATCATCATTCTTAT+TGG - Chr5:6010519-6010538 MsG0580024525.01.T01:intron 30.0%
ATCTCCTTTGTATAGATGTT+AGG + Chr5:6012278-6012297 None:intergenic 30.0%
ATTGAATCAACAAAGAACTG+GGG - Chr5:6010358-6010377 MsG0580024525.01.T01:intron 30.0%
CAAGAAATGCTATAATTGCA+GGG - Chr5:6009961-6009980 MsG0580024525.01.T01:intron 30.0%
CAGAAAAGAAAAACCTCAAA+TGG + Chr5:6011170-6011189 None:intergenic 30.0%
CTTGATGAAACATAAGAACT+TGG - Chr5:6010892-6010911 MsG0580024525.01.T01:intron 30.0%
CTTGTATATGGAATTTGGTT+TGG - Chr5:6013252-6013271 MsG0580024525.01.T01:intron 30.0%
GAAAAGAAGAAAGTGAGAAA+TGG + Chr5:6010266-6010285 None:intergenic 30.0%
GATGAAGAATCATAATTGTC+CGG + Chr5:6010441-6010460 None:intergenic 30.0%
GATTGAATCAACAAAGAACT+GGG - Chr5:6010357-6010376 MsG0580024525.01.T01:intron 30.0%
GTTTCATCAAGACAGTTATT+TGG + Chr5:6010883-6010902 None:intergenic 30.0%
TAACATTAAGGAGATGTTTC+AGG - Chr5:6010972-6010991 MsG0580024525.01.T01:intron 30.0%
TAACCAAAAATCAAAGGTTG+AGG + Chr5:6013420-6013439 None:intergenic 30.0%
TATGTTTCAAGAAACAGTGT+AGG + Chr5:6011678-6011697 None:intergenic 30.0%
TCAAAGCATGGAAATTAACA+CGG + Chr5:6011068-6011087 None:intergenic 30.0%
TGATTGAGCAACTAACATTA+AGG - Chr5:6010960-6010979 MsG0580024525.01.T01:intron 30.0%
TGTAATAAACGAACAAAAGG+AGG + Chr5:6012465-6012484 None:intergenic 30.0%
TTGTTGCCTTGTGATAAAAT+AGG - Chr5:6012087-6012106 MsG0580024525.01.T01:intron 30.0%
TTTATGTTCTGTTTATTCGC+TGG - Chr5:6012694-6012713 MsG0580024525.01.T01:intron 30.0%
! AAGAGCTCCATTTTGTATTT+TGG - Chr5:6010184-6010203 MsG0580024525.01.T01:intron 30.0%
! ACATACTTTTGCATCAAGTT+TGG + Chr5:6013301-6013320 None:intergenic 30.0%
! ACCAATCTAGAGTAAAAAGT+AGG + Chr5:6009488-6009507 None:intergenic 30.0%
! CCAATCTAGAGTAAAAAGTA+GGG + Chr5:6009487-6009506 None:intergenic 30.0%
! GAAACATAAGAACTTGGTTT+TGG - Chr5:6010898-6010917 MsG0580024525.01.T01:intron 30.0%
! TTACTTATACTTTGGGTTTG+TGG - Chr5:6011272-6011291 MsG0580024525.01.T01:intron 30.0%
!! ATGAGACTTTTGATTATGAC+CGG - Chr5:6010419-6010438 MsG0580024525.01.T01:intron 30.0%
!! TGGTTTGATGCTTTTTGTTT+TGG - Chr5:6009394-6009413 MsG0580024525.01.T01:CDS 30.0%
!! TGTTTTTGTGAATTTGGTTG+TGG - Chr5:6010932-6010951 MsG0580024525.01.T01:intron 30.0%
!! TTACCTCAACCTTTGATTTT+TGG - Chr5:6013414-6013433 MsG0580024525.01.T01:intron 30.0%
!!! GAGTTGATTTGATTTTTCGT+TGG - Chr5:6013175-6013194 MsG0580024525.01.T01:intron 30.0%
!!! GGTTTGATGCTTTTTGTTTT+GGG - Chr5:6009395-6009414 MsG0580024525.01.T01:CDS 30.0%
!!! GTCCAATTTTATTTCTGAAC+AGG + Chr5:6012925-6012944 None:intergenic 30.0%
!!! TAAATTTTTTTGGACTTGGG+GGG + Chr5:6011811-6011830 None:intergenic 30.0%
!!! TTGCTACTTTTATGAAGTGA+AGG + Chr5:6012899-6012918 None:intergenic 30.0%
!!! TTTCAGGTTGTTATTTTGGT+GGG - Chr5:6011487-6011506 MsG0580024525.01.T01:intron 30.0%
!!! TTTTCAGGTTGTTATTTTGG+TGG - Chr5:6011486-6011505 MsG0580024525.01.T01:intron 30.0%
AAAGTCAGCACTGTTAAGAA+AGG + Chr5:6011642-6011661 None:intergenic 35.0%
AAATAGGATTTGAGTCCAGA+TGG - Chr5:6012103-6012122 MsG0580024525.01.T01:intron 35.0%
ACAAACAATGTAGTCTACAG+CGG + Chr5:6012351-6012370 None:intergenic 35.0%
ACAACAACCTCTGTATATGT+AGG - Chr5:6009900-6009919 MsG0580024525.01.T01:intron 35.0%
ACATGCTTTCTGATCTTGAA+TGG - Chr5:6009441-6009460 MsG0580024525.01.T01:CDS 35.0%
AGCTATTCCATTACTAGATG+TGG + Chr5:6012545-6012564 None:intergenic 35.0%
ATCGCAACTTTGTGAAAGTT+AGG - Chr5:6011965-6011984 MsG0580024525.01.T01:intron 35.0%
ATTCTTATTGGAAGGATGAG+AGG - Chr5:6010531-6010550 MsG0580024525.01.T01:CDS 35.0%
ATTGATCTCATCACCTTATC+AGG + Chr5:6010721-6010740 None:intergenic 35.0%
CAACAACCTCTGTATATGTA+GGG - Chr5:6009901-6009920 MsG0580024525.01.T01:intron 35.0%
CCATATGTCGATGAAAAACT+CGG - Chr5:6013680-6013699 MsG0580024525.01.T01:CDS 35.0%
GAGAAAGAAAGAAATGAGCT+TGG - Chr5:6011513-6011532 MsG0580024525.01.T01:intron 35.0%
GGATCATCATTCTTATTGGA+AGG - Chr5:6010523-6010542 MsG0580024525.01.T01:intron 35.0%
GGATTGAATCAACAAAGAAC+TGG - Chr5:6010356-6010375 MsG0580024525.01.T01:intron 35.0%
GGCATTCTTCTATTCAGAAA+AGG - Chr5:6012715-6012734 MsG0580024525.01.T01:intron 35.0%
GTTAGGAAAAGATCTTTGAG+AGG + Chr5:6012261-6012280 None:intergenic 35.0%
GTTTGACCAAGTTCTTGAAT+AGG + Chr5:6011102-6011121 None:intergenic 35.0%
TAAGAATGATGATCCAACTC+AGG + Chr5:6010518-6010537 None:intergenic 35.0%
TACTAACAACAATGGCAACA+TGG - Chr5:6012391-6012410 MsG0580024525.01.T01:intron 35.0%
TCCATATATCAATTGGTGCA+CGG + Chr5:6009612-6009631 None:intergenic 35.0%
TCGCAACTTTGTGAAAGTTA+GGG - Chr5:6011966-6011985 MsG0580024525.01.T01:intron 35.0%
TCTAAACCACATTTGGAGAA+TGG + Chr5:6012867-6012886 None:intergenic 35.0%
TGAATGGTATTCTCATCGAT+TGG - Chr5:6009457-6009476 MsG0580024525.01.T01:CDS 35.0%
TGATAAGGTGATGAGATCAA+TGG - Chr5:6010720-6010739 MsG0580024525.01.T01:intron 35.0%
TGCTACAGTTGCAAAACTTA+GGG + Chr5:6011781-6011800 None:intergenic 35.0%
TGTCAAAAGAGTTCCTGATA+AGG - Chr5:6010705-6010724 MsG0580024525.01.T01:intron 35.0%
TTGGTGAAATCAGAAAAAGG+TGG - Chr5:6011532-6011551 MsG0580024525.01.T01:intron 35.0%
TTGTGAATTTGGTTGTGGTA+AGG - Chr5:6010937-6010956 MsG0580024525.01.T01:intron 35.0%
TTTAGTCCCTACATATACAG+AGG + Chr5:6009910-6009929 None:intergenic 35.0%
! ACACAGTTTTCGAATTTGCA+AGG + Chr5:6009823-6009842 None:intergenic 35.0%
! AGCTTGGTGAAATCAGAAAA+AGG - Chr5:6011529-6011548 MsG0580024525.01.T01:intron 35.0%
! CTTTCACAAAGTTGCGATTT+TGG + Chr5:6011963-6011982 None:intergenic 35.0%
! GGTTTAATTTCGCTTCTTAC+TGG - Chr5:6009416-6009435 MsG0580024525.01.T01:CDS 35.0%
! GTTTTGTGAATCTCAAAGCA+TGG + Chr5:6011080-6011099 None:intergenic 35.0%
! TGTTGTTTGGTAACAAAGCT+AGG + Chr5:6009298-6009317 None:intergenic 35.0%
! TTTTGCAACTGTAGCAGTTT+TGG - Chr5:6011785-6011804 MsG0580024525.01.T01:intron 35.0%
!! TCAAATGGACTGCTATGAAA+CGG + Chr5:6011155-6011174 None:intergenic 35.0%
!! TCAATGGATTGTAGTCTTAC+TGG + Chr5:6011567-6011586 None:intergenic 35.0%
!! TGGCAGTGTTTTTGTGAATT+TGG - Chr5:6010926-6010945 MsG0580024525.01.T01:intron 35.0%
!!! AGAACTTGGTTTTGGTCAAT+TGG - Chr5:6010906-6010925 MsG0580024525.01.T01:intron 35.0%
!!! CCCTACTTTTTACTCTAGAT+TGG - Chr5:6009484-6009503 MsG0580024525.01.T01:intron 35.0%
!!! GCCTTTTCAGGTTGTTATTT+TGG - Chr5:6011483-6011502 MsG0580024525.01.T01:CDS 35.0%
!!! TTCAGGTTGTTATTTTGGTG+GGG - Chr5:6011488-6011507 MsG0580024525.01.T01:intron 35.0%
AACAAAGAACTGGGGTAAGT+AGG - Chr5:6010366-6010385 MsG0580024525.01.T01:intron 40.0%
AACATCAAACCCACTTCATG+AGG + Chr5:6012159-6012178 None:intergenic 40.0%
ACAGTAGAATAGGTGGGAAT+TGG - Chr5:6012955-6012974 MsG0580024525.01.T01:intron 40.0%
ACATACCTCTATGTTGCATC+GGG - Chr5:6012204-6012223 MsG0580024525.01.T01:CDS 40.0%
ACCGTGCACCAATTGATATA+TGG - Chr5:6009608-6009627 MsG0580024525.01.T01:intron 40.0%
ACCTGTCGTCTCAAAAGAAT+TGG + Chr5:6010814-6010833 None:intergenic 40.0%
ACGAATTCTTAATGCTACGC+TGG - Chr5:6010487-6010506 MsG0580024525.01.T01:intron 40.0%
ACTGCTGTATCGAGTGAAAT+GGG - Chr5:6010098-6010117 MsG0580024525.01.T01:intron 40.0%
ATCGGGAGAAATATATGGAG+GGG - Chr5:6012221-6012240 MsG0580024525.01.T01:CDS 40.0%
ATGGTTGTGGACAGTAGAAT+AGG - Chr5:6012945-6012964 MsG0580024525.01.T01:intron 40.0%
ATTAGAAATAGGTGGGAGAG+CGG - Chr5:6012634-6012653 MsG0580024525.01.T01:CDS 40.0%
CAACTACAGCATCTGTTATC+TGG + Chr5:6010463-6010482 None:intergenic 40.0%
CACATACCTCTATGTTGCAT+CGG - Chr5:6012203-6012222 MsG0580024525.01.T01:CDS 40.0%
CATCGGGAGAAATATATGGA+GGG - Chr5:6012220-6012239 MsG0580024525.01.T01:CDS 40.0%
CCAAATGTGGTTTAGACCAT+AGG - Chr5:6012871-6012890 MsG0580024525.01.T01:intron 40.0%
CCAGACAAAACAAACTTGCA+GGG - Chr5:6009931-6009950 MsG0580024525.01.T01:intron 40.0%
CCTATGGTCTAAACCACATT+TGG + Chr5:6012874-6012893 None:intergenic 40.0%
CGCAACTTTGTGAAAGTTAG+GGG - Chr5:6011967-6011986 MsG0580024525.01.T01:intron 40.0%
CTACAGTTGCAAAACTTAGG+GGG + Chr5:6011779-6011798 None:intergenic 40.0%
CTGCTACAGTTGCAAAACTT+AGG + Chr5:6011782-6011801 None:intergenic 40.0%
GAAACTTACGAGCATAATCG+CGG + Chr5:6009678-6009697 None:intergenic 40.0%
GATTATTCTGTTAGGAAGCG+TGG - Chr5:6012579-6012598 MsG0580024525.01.T01:intron 40.0%
GCAACTTTGTGAAAGTTAGG+GGG - Chr5:6011968-6011987 MsG0580024525.01.T01:intron 40.0%
GCTACAGTTGCAAAACTTAG+GGG + Chr5:6011780-6011799 None:intergenic 40.0%
GGATTGTCCACATCTAGTAA+TGG - Chr5:6012535-6012554 MsG0580024525.01.T01:intron 40.0%
GTGCTAAGCTTCTTTGCATT+TGG + Chr5:6013512-6013531 None:intergenic 40.0%
GTTGCATCGGGAGAAATATA+TGG - Chr5:6012216-6012235 MsG0580024525.01.T01:CDS 40.0%
GTTTCATAGCAGTCCATTTG+AGG - Chr5:6011154-6011173 MsG0580024525.01.T01:intron 40.0%
TATTATGGATGCAGTGACAG+AGG - Chr5:6009652-6009671 MsG0580024525.01.T01:intron 40.0%
TGATGACCATTCTCCAAATG+TGG - Chr5:6012858-6012877 MsG0580024525.01.T01:intron 40.0%
TGTTACGAGAATGCAGAAGA+TGG - Chr5:6011125-6011144 MsG0580024525.01.T01:intron 40.0%
TTGGGACACGCATTGTATAT+GGG + Chr5:6010753-6010772 None:intergenic 40.0%
TTGTGGACAGTAGAATAGGT+GGG - Chr5:6012949-6012968 MsG0580024525.01.T01:intron 40.0%
TTTGTGGTGTGTTGTGTTAG+TGG - Chr5:6010146-6010165 MsG0580024525.01.T01:intron 40.0%
! AATCGGGTTCTGATTTCCTT+GGG + Chr5:6010771-6010790 None:intergenic 40.0%
! CCGAGTTTTTCATCGACATA+TGG + Chr5:6013683-6013702 None:intergenic 40.0%
! GTTTTTGTAGCTCGTCATCA+AGG + Chr5:6011038-6011057 None:intergenic 40.0%
! TAATCGGGTTCTGATTTCCT+TGG + Chr5:6010772-6010791 None:intergenic 40.0%
!! AAGCTTAGCACACTTTTTGC+GGG - Chr5:6013521-6013540 MsG0580024525.01.T01:CDS 40.0%
!! GAAGCTTAGCACACTTTTTG+CGG - Chr5:6013520-6013539 MsG0580024525.01.T01:CDS 40.0%
!! GCACGAGAAAGTTGATTTTG+AGG + Chr5:6011313-6011332 None:intergenic 40.0%
!! TTATGAAGTGAAGGTGCCTA+TGG + Chr5:6012890-6012909 None:intergenic 40.0%
!! TTGTTGATTCAATCCTCCAC+TGG + Chr5:6010351-6010370 None:intergenic 40.0%
!!! CCTGCAAGTTTGTTTTGTCT+GGG + Chr5:6009933-6009952 None:intergenic 40.0%
!!! TCAGGTTGTTATTTTGGTGG+GGG - Chr5:6011489-6011508 MsG0580024525.01.T01:intron 40.0%
AACATGGCCAAGATTCTAGC+TGG - Chr5:6012407-6012426 MsG0580024525.01.T01:intron 45.0%
AAGAGCTGGGAAATTCGTGA+TGG + Chr5:6013646-6013665 None:intergenic 45.0%
AAGGTTAAGGCATGCCAAAG+AGG - Chr5:6013578-6013597 MsG0580024525.01.T01:CDS 45.0%
ACTGCCACAGTGCAAAACTT+AGG - Chr5:6011906-6011925 MsG0580024525.01.T01:CDS 45.0%
AGAACAACATGACGATCTCG+TGG - Chr5:6009360-6009379 MsG0580024525.01.T01:CDS 45.0%
AGCGTAGACCGAGTCAAAAT+TGG - Chr5:6011869-6011888 MsG0580024525.01.T01:CDS 45.0%
AGTCTCCAACGTCAGCTTAT+TGG - Chr5:6009848-6009867 MsG0580024525.01.T01:intron 45.0%
ATAGGTAAGGCTTGGAGGTT+AGG - Chr5:6009257-6009276 MsG0580024525.01.T01:CDS 45.0%
CATATACAATGCGTGTCCCA+AGG - Chr5:6010752-6010771 MsG0580024525.01.T01:intron 45.0%
CCCAGACAAAACAAACTTGC+AGG - Chr5:6009930-6009949 MsG0580024525.01.T01:intron 45.0%
CCTCTTACTCCTCATGAAGT+GGG - Chr5:6012147-6012166 MsG0580024525.01.T01:CDS 45.0%
CCTGAAAAGGCTAGCATATC+TGG + Chr5:6011474-6011493 None:intergenic 45.0%
CGGGATGAGAATGGAAGAAA+AGG + Chr5:6012323-6012342 None:intergenic 45.0%
CTCGATACAGCAGTCTTTCA+AGG + Chr5:6010092-6010111 None:intergenic 45.0%
CTCTCACAAACACAAGAGCT+GGG + Chr5:6013659-6013678 None:intergenic 45.0%
CTGCCACAGTGCAAAACTTA+GGG - Chr5:6011907-6011926 MsG0580024525.01.T01:CDS 45.0%
CTTGGGACACGCATTGTATA+TGG + Chr5:6010754-6010773 None:intergenic 45.0%
GACTGCTGTATCGAGTGAAA+TGG - Chr5:6010097-6010116 MsG0580024525.01.T01:intron 45.0%
GATTTGAGTCCAGATGGAGA+AGG - Chr5:6012109-6012128 MsG0580024525.01.T01:intron 45.0%
GCATCGGGAGAAATATATGG+AGG - Chr5:6012219-6012238 MsG0580024525.01.T01:CDS 45.0%
GCATGCCAAAGAGGATTCAT+GGG - Chr5:6013587-6013606 MsG0580024525.01.T01:CDS 45.0%
GTCTCCAACGTCAGCTTATT+GGG - Chr5:6009849-6009868 MsG0580024525.01.T01:intron 45.0%
GTGTGAGTATAGGTAAGGCT+TGG - Chr5:6009249-6009268 MsG0580024525.01.T01:CDS 45.0%
GTTGTGGACAGTAGAATAGG+TGG - Chr5:6012948-6012967 MsG0580024525.01.T01:intron 45.0%
TACCTTCGCCAGAAAGGTTA+AGG - Chr5:6013565-6013584 MsG0580024525.01.T01:CDS 45.0%
TACTTGCTTATTGCAGCCAG+TGG - Chr5:6010332-6010351 MsG0580024525.01.T01:intron 45.0%
TCATGCACATGTGCTTCTGT+GGG - Chr5:6013350-6013369 MsG0580024525.01.T01:intron 45.0%
TCCTCTTACTCCTCATGAAG+TGG - Chr5:6012146-6012165 MsG0580024525.01.T01:CDS 45.0%
TCTCCAACGTCAGCTTATTG+GGG - Chr5:6009850-6009869 MsG0580024525.01.T01:intron 45.0%
TCTCTCACAAACACAAGAGC+TGG + Chr5:6013660-6013679 None:intergenic 45.0%
TGAGTATAGGTAAGGCTTGG+AGG - Chr5:6009252-6009271 MsG0580024525.01.T01:CDS 45.0%
TGCCACAGTGCAAAACTTAG+GGG - Chr5:6011908-6011927 MsG0580024525.01.T01:CDS 45.0%
TGGGACACGCATTGTATATG+GGG + Chr5:6010752-6010771 None:intergenic 45.0%
TTGGCATGCCTTAACCTTTC+TGG + Chr5:6013576-6013595 None:intergenic 45.0%
TTTCTCCCGATGCAACATAG+AGG + Chr5:6012212-6012231 None:intergenic 45.0%
! AATAAGAGTTTGGGATGCGC+AGG - Chr5:6011391-6011410 MsG0580024525.01.T01:intron 45.0%
! ATAAGAGTTTGGGATGCGCA+GGG - Chr5:6011392-6011411 MsG0580024525.01.T01:intron 45.0%
! GTTTTGCACTGTGGCAGTTT+TGG + Chr5:6011904-6011923 None:intergenic 45.0%
!! ACCGAGTCAAAATTGGCCTT+GGG - Chr5:6011876-6011895 MsG0580024525.01.T01:CDS 45.0%
!! ATCTCGTGGTCTTTGGTTTG+TGG - Chr5:6009374-6009393 MsG0580024525.01.T01:CDS 45.0%
!! TTAGCACACTTTTTGCGGGA+AGG - Chr5:6013525-6013544 MsG0580024525.01.T01:CDS 45.0%
!!! CCAGATATGCTAGCCTTTTC+AGG - Chr5:6011471-6011490 MsG0580024525.01.T01:CDS 45.0%
!!! CCCTGCAAGTTTGTTTTGTC+TGG + Chr5:6009934-6009953 None:intergenic 45.0%
!!! GCCAATTCTTTTGAGACGAC+AGG - Chr5:6010810-6010829 MsG0580024525.01.T01:CDS 45.0%
!!! TTCTTTTGAGACGACAGGTG+TGG - Chr5:6010815-6010834 MsG0580024525.01.T01:CDS 45.0%
!!! TGTTATTTTTTAAATTTTTT+TGG + Chr5:6011821-6011840 None:intergenic 5.0%
AACACGTGGCACCTCACTTA+GGG - Chr5:6011837-6011856 MsG0580024525.01.T01:CDS 50.0%
ACAGTGCAAAACTTAGGGGG+CGG - Chr5:6011912-6011931 MsG0580024525.01.T01:CDS 50.0%
CAATGTAGTCTACAGCGGCT+AGG + Chr5:6012346-6012365 None:intergenic 50.0%
CAGTTGCAAAACTTAGGGGG+CGG + Chr5:6011776-6011795 None:intergenic 50.0%
CATGACGATCTCGTGGTCTT+TGG - Chr5:6009367-6009386 MsG0580024525.01.T01:CDS 50.0%
CCACACTCTTGCTAGTCGAA+TGG + Chr5:6011611-6011630 None:intergenic 50.0%
CCATTCGACTAGCAAGAGTG+TGG - Chr5:6011608-6011627 MsG0580024525.01.T01:intron 50.0%
CCCACTTCATGAGGAGTAAG+AGG + Chr5:6012150-6012169 None:intergenic 50.0%
CCTTCGACCAGCTAGAATCT+TGG + Chr5:6012417-6012436 None:intergenic 50.0%
CTCCAACGTCAGCTTATTGG+GGG - Chr5:6009851-6009870 MsG0580024525.01.T01:intron 50.0%
GCCACAGTGCAAAACTTAGG+GGG - Chr5:6011909-6011928 MsG0580024525.01.T01:CDS 50.0%
GCTCTCCCATGAATCCTCTT+TGG + Chr5:6013595-6013614 None:intergenic 50.0%
GGAGAATGGTCATCACTCCT+TGG + Chr5:6012853-6012872 None:intergenic 50.0%
GGCATGCCAAAGAGGATTCA+TGG - Chr5:6013586-6013605 MsG0580024525.01.T01:CDS 50.0%
GGGACACGCATTGTATATGG+GGG + Chr5:6010751-6010770 None:intergenic 50.0%
GGTTTGATGTTACGCGCACT+TGG - Chr5:6012168-6012187 MsG0580024525.01.T01:CDS 50.0%
GTCATGCACATGTGCTTCTG+TGG - Chr5:6013349-6013368 MsG0580024525.01.T01:CDS 50.0%
TAACACGTGGCACCTCACTT+AGG - Chr5:6011836-6011855 MsG0580024525.01.T01:CDS 50.0%
TCCAACGTCAGCTTATTGGG+GGG - Chr5:6009852-6009871 MsG0580024525.01.T01:intron 50.0%
TTGCTTATTGCAGCCAGTGG+AGG - Chr5:6010335-6010354 MsG0580024525.01.T01:intron 50.0%
! CCAAGATTCTAGCTGGTCGA+AGG - Chr5:6012414-6012433 MsG0580024525.01.T01:CDS 50.0%
! GACCGAGTCAAAATTGGCCT+TGG - Chr5:6011875-6011894 MsG0580024525.01.T01:CDS 50.0%
! TAAGAGTTTGGGATGCGCAG+GGG - Chr5:6011393-6011412 MsG0580024525.01.T01:intron 50.0%
! TACGCTGGTTGTACCTGAGT+TGG - Chr5:6010502-6010521 MsG0580024525.01.T01:intron 50.0%
! TGCCTTAACCTTTCTGGCGA+AGG + Chr5:6013570-6013589 None:intergenic 50.0%
!! CCGAGTCAAAATTGGCCTTG+GGG - Chr5:6011877-6011896 MsG0580024525.01.T01:CDS 50.0%
!! CGAGTCAAAATTGGCCTTGG+GGG - Chr5:6011878-6011897 MsG0580024525.01.T01:CDS 50.0%
!!! CCCCAAGGCCAATTTTGACT+CGG + Chr5:6011880-6011899 None:intergenic 50.0%
!!! TTTTGCGGGAAGGCATCAGA+TGG - Chr5:6013535-6013554 MsG0580024525.01.T01:CDS 50.0%
CCAACGTCAGCTTATTGGGG+GGG - Chr5:6009853-6009872 MsG0580024525.01.T01:intron 55.0%
CCAGATGGAGAAGGAAGCGA+GGG - Chr5:6012118-6012137 MsG0580024525.01.T01:intron 55.0%
CGTCCAGGTCTCATCTCATC+TGG + Chr5:6013617-6013636 None:intergenic 55.0%
CTGGCATACCTTCGCCAGAA+AGG - Chr5:6013559-6013578 MsG0580024525.01.T01:CDS 55.0%
GAGCCAGATGAGATGAGACC+TGG - Chr5:6013611-6013630 MsG0580024525.01.T01:CDS 55.0%
GGTCATCACTCCTTGGCAGA+GGG + Chr5:6012846-6012865 None:intergenic 55.0%
GTGCGTGAGCAGATGTCGAA+TGG - Chr5:6010308-6010327 MsG0580024525.01.T01:intron 55.0%
TCCAGATGGAGAAGGAAGCG+AGG - Chr5:6012117-6012136 MsG0580024525.01.T01:intron 55.0%
TCGTGATGGTCATCTCGTCC+AGG + Chr5:6013632-6013651 None:intergenic 55.0%
TGGTCATCACTCCTTGGCAG+AGG + Chr5:6012847-6012866 None:intergenic 55.0%
TGTAGTCTACAGCGGCTAGG+CGG + Chr5:6012343-6012362 None:intergenic 55.0%
! GCCCCCTAAGTTTTGCACTG+TGG + Chr5:6011913-6011932 None:intergenic 55.0%
!! TCCTTGGCAGAGGGCATTGT+GGG + Chr5:6012837-6012856 None:intergenic 55.0%
CCCCCCCAATAAGCTGACGT+TGG + Chr5:6009856-6009875 None:intergenic 60.0%
CCCTCGCTTCCTTCTCCATC+TGG + Chr5:6012121-6012140 None:intergenic 60.0%
CTGACGTGGCACCCTAAGTG+AGG + Chr5:6011851-6011870 None:intergenic 60.0%
GTAGTCTACAGCGGCTAGGC+GGG + Chr5:6012342-6012361 None:intergenic 60.0%
! TGGGAGAGCGGTTAGCTGTG+TGG - Chr5:6012646-6012665 MsG0580024525.01.T01:intron 60.0%
!! CGGGAAGGCATCAGATGGAC+TGG - Chr5:6013540-6013559 MsG0580024525.01.T01:CDS 60.0%
!! CTCCTTGGCAGAGGGCATTG+TGG + Chr5:6012838-6012857 None:intergenic 60.0%
!! TGACTCGGTCTACGCTGACG+TGG + Chr5:6011865-6011884 None:intergenic 60.0%
!! TGTGGCAGTTTTGGCCCCCA+AGG + Chr5:6011895-6011914 None:intergenic 60.0%
GCCCACAATGCCCTCTGCCA+AGG - Chr5:6012833-6012852 MsG0580024525.01.T01:intron 65.0%
GCGGCTAGGCGGGATGAGAA+TGG + Chr5:6012332-6012351 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 6009245 6013721 6009245 ID=MsG0580024525.01;Name=MsG0580024525.01
Chr5 mRNA 6009245 6013721 6009245 ID=MsG0580024525.01.T01;Parent=MsG0580024525.01;Name=MsG0580024525.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0|0|1|1|1|10|0|498
Chr5 exon 6013461 6013721 6013461 ID=MsG0580024525.01.T01:exon:19247;Parent=MsG0580024525.01.T01
Chr5 exon 6013278 6013368 6013278 ID=MsG0580024525.01.T01:exon:19246;Parent=MsG0580024525.01.T01
Chr5 exon 6012587 6012663 6012587 ID=MsG0580024525.01.T01:exon:19245;Parent=MsG0580024525.01.T01
Chr5 exon 6012414 6012502 6012414 ID=MsG0580024525.01.T01:exon:19244;Parent=MsG0580024525.01.T01
Chr5 exon 6012135 6012324 6012135 ID=MsG0580024525.01.T01:exon:19243;Parent=MsG0580024525.01.T01
Chr5 exon 6011791 6011972 6011791 ID=MsG0580024525.01.T01:exon:19242;Parent=MsG0580024525.01.T01
Chr5 exon 6011400 6011502 6011400 ID=MsG0580024525.01.T01:exon:19241;Parent=MsG0580024525.01.T01
Chr5 exon 6010798 6010879 6010798 ID=MsG0580024525.01.T01:exon:19240;Parent=MsG0580024525.01.T01
Chr5 exon 6010531 6010708 6010531 ID=MsG0580024525.01.T01:exon:19239;Parent=MsG0580024525.01.T01
Chr5 exon 6009245 6009488 6009245 ID=MsG0580024525.01.T01:exon:19238;Parent=MsG0580024525.01.T01
Chr5 CDS 6013461 6013721 6013461 ID=MsG0580024525.01.T01:cds;Parent=MsG0580024525.01.T01
Chr5 CDS 6013278 6013368 6013278 ID=MsG0580024525.01.T01:cds;Parent=MsG0580024525.01.T01
Chr5 CDS 6012587 6012663 6012587 ID=MsG0580024525.01.T01:cds;Parent=MsG0580024525.01.T01
Chr5 CDS 6012414 6012502 6012414 ID=MsG0580024525.01.T01:cds;Parent=MsG0580024525.01.T01
Chr5 CDS 6012135 6012324 6012135 ID=MsG0580024525.01.T01:cds;Parent=MsG0580024525.01.T01
Chr5 CDS 6011791 6011972 6011791 ID=MsG0580024525.01.T01:cds;Parent=MsG0580024525.01.T01
Chr5 CDS 6011400 6011502 6011400 ID=MsG0580024525.01.T01:cds;Parent=MsG0580024525.01.T01
Chr5 CDS 6010798 6010879 6010798 ID=MsG0580024525.01.T01:cds;Parent=MsG0580024525.01.T01
Chr5 CDS 6010531 6010708 6010531 ID=MsG0580024525.01.T01:cds;Parent=MsG0580024525.01.T01
Chr5 CDS 6009245 6009488 6009245 ID=MsG0580024525.01.T01:cds;Parent=MsG0580024525.01.T01
Gene Sequence

>MsG0580024525.01.T01

ATGGGTGTGAGTATAGGTAAGGCTTGGAGGTTAGGAGTATTATCAACGAACCTAGCTTTGTTACCAAACAACAAAAAGAAACAACAACAACAGCAGCAACATGTTTGTTCTCGAAAGAACAACATGACGATCTCGTGGTCTTTGGTTTGTGGTTTGATGCTTTTTGTTTTGGGTTTAATTTCGCTTCTTACTGGTCACATGCTTTCTGATCTTGAATGGTATTCTCATCGATTGGTTCACCCTACTTTTTACTCTAGATTGGATGGGCATTACCGTGCACCAATTGATATATGGAAATCTAAATTGTCTAAATATTATTATGGATGCAGTGACAGAGGCCGCGATTATGCTCCTGCTGTGCGTGAGCAGATGTCGAATGGCTACTTGCTTATTGCAGCCAGTGGAGGATTGAATCAACAAAGAACTGGGATAACAGATGCTGTAGTTGTTGCACGAATTCTTAATGCTACGCTGGTTGTACCTGAGTTGGATCATCATTCTTATTGGAAGGATGAGAGTGACTTCATCAATATTTTCGATGTTGATTGGTTCATTTCTTATCTCGCAAAAGACGTCACTATTGTCAAAAGAGTTCCTGATAAGGTGATGAGATCAATGGAAAAACCCCCATATACAATGCGTGTCCCAAGGAAATCAGAACCCGATTATTATCTTGATCAAGTTTTGCCAATTCTTTTGAGACGACAGGTTGTACAATTGACGAAGTTTGACTTTAGACTTGCGAATCACCTTGATGACGAGCTACAAAAACTACGATGCCGTGTTAATTTCCATGCTTTGAGATTCACAAAACCTATTCAAGAACTTGGTCAAACAATTGTTACGAGAATGCAGAAGATGGCTCACCGTTTCATAGCAGTCCATTTGAGATTTGAACCAGATATGCTAGCCTTTTCAGGTTGTTATTTTGGTGGGGGAGAGAAAGAAAGAAATGAGCTTGGTGAAATCAGAAAAAGGTGGACAACATTACCATTGTTGCCTTGTGATAAAATAGGATTTGAGTCCAGATGGAGAAGGAAGCGAGGGAAATGTCCTCTTACTCCTCATGAAGTGGCCTCTCAAAGATCTTTTCCTAACATCTATACAAAGGAGATGCTTGCTGATGAAGAGCTGAAACCTTTTCTTCCATTCTCATCCCGCCTAGCCGCTGTAGACTACATTGTTTGTGATGAAAGCGATGTATTTGTTACTAACAACAATGGCAACATGGCCAAGATTCTAGCTGGTCGAAGGAGATATATGGGTCACAAAAGAACAATTAGACCAAATGCAAAGAAGCTTAGCACACTTTTTGCGGGAAGGCATCAGATGGACTGGCATACCTTCGCCAGAAAGGTTAAGGCATGCCAAAGAGGATTCATGGGAGAGCCAGATGAGATGAGACCTGGACGAGATGACCATCACGAATTTCCCAGCTCTTGTGTTTGTGAGAGACCATATGTCGATGAAAAACTCGGTACAAAGATTGATACCTGA
Protein sequence

>MsG0580024525.01.T01

MGVSIGKAWRLGVLSTNLALLPNNKKKQQQQQQHVCSRKNNMTISWSLVCGLMLFVLGLISLLTGHMLSDLEWYSHRLVHPTFYSRLDGHYRAPIDIWKSKLSKYYYGCSDRGRDYAPAVREQMSNGYLLIAASGGLNQQRTGITDAVVVARILNATLVVPELDHHSYWKDESDFINIFDVDWFISYLAKDVTIVKRVPDKVMRSMEKPPYTMRVPRKSEPDYYLDQVLPILLRRQVVQLTKFDFRLANHLDDELQKLRCRVNFHALRFTKPIQELGQTIVTRMQKMAHRFIAVHLRFEPDMLAFSGCYFGGGEKERNELGEIRKRWTTLPLLPCDKIGFESRWRRKRGKCPLTPHEVASQRSFPNIYTKEMLADEELKPFLPFSSRLAAVDYIVCDESDVFVTNNNGNMAKILAGRRRYMGHKRTIRPNAKKLSTLFAGRHQMDWHTFARKVKACQRGFMGEPDEMRPGRDDHHEFPSSCVCERPYVDEKLGTKIDT*