Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024561.01.T01 | XP_003611359.2 | 94.574 | 387 | 21 | 0 | 4 | 390 | 32 | 418 | 0 | 741 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024561.01.T01 | Q7FAZ3 | 38.058 | 381 | 208 | 12 | 25 | 390 | 24 | 391 | 1.01E-73 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024561.01.T01 | G7JXG0 | 94.574 | 387 | 21 | 0 | 4 | 390 | 3 | 389 | 0.0 | 739 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0580024561.01 | MsG0580024562.01 | 0.800160 | 1.641877e-48 | 7.590912e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024561.01.T01 | MTR_5g013130 | 94.574 | 387 | 21 | 0 | 4 | 390 | 3 | 389 | 0.0 | 739 |
| MsG0580024561.01.T01 | MTR_5g013070 | 85.166 | 391 | 52 | 4 | 4 | 390 | 2 | 390 | 0.0 | 681 |
| MsG0580024561.01.T01 | MTR_8g011430 | 42.091 | 373 | 192 | 11 | 26 | 390 | 35 | 391 | 2.65e-88 | 274 |
| MsG0580024561.01.T01 | MTR_8g011370 | 41.689 | 367 | 185 | 13 | 33 | 390 | 37 | 383 | 1.53e-85 | 276 |
| MsG0580024561.01.T01 | MTR_2g067980 | 42.021 | 376 | 192 | 11 | 24 | 390 | 260 | 618 | 2.28e-82 | 272 |
| MsG0580024561.01.T01 | MTR_8g011410 | 41.144 | 367 | 187 | 13 | 33 | 390 | 37 | 383 | 2.32e-79 | 263 |
| MsG0580024561.01.T01 | MTR_2g067990 | 40.691 | 376 | 196 | 11 | 25 | 390 | 237 | 595 | 3.01e-77 | 257 |
| MsG0580024561.01.T01 | MTR_8g011440 | 39.118 | 363 | 194 | 12 | 35 | 390 | 825 | 1167 | 1.99e-69 | 237 |
| MsG0580024561.01.T01 | MTR_8g011440 | 36.410 | 390 | 204 | 14 | 17 | 390 | 31 | 392 | 4.79e-65 | 224 |
| MsG0580024561.01.T01 | MTR_5g013050 | 90.196 | 102 | 10 | 0 | 221 | 322 | 55 | 156 | 1.16e-65 | 206 |
| MsG0580024561.01.T01 | MTR_8g011377 | 34.711 | 363 | 160 | 10 | 33 | 390 | 272 | 562 | 9.21e-57 | 196 |
| MsG0580024561.01.T01 | MTR_8g011377 | 30.622 | 209 | 106 | 5 | 157 | 360 | 14 | 188 | 1.43e-24 | 106 |
| MsG0580024561.01.T01 | MTR_2g068650 | 35.092 | 379 | 160 | 14 | 25 | 390 | 30 | 335 | 2.30e-55 | 194 |
| MsG0580024561.01.T01 | MTR_2g067970 | 37.612 | 335 | 177 | 14 | 24 | 340 | 195 | 515 | 1.03e-52 | 188 |
| MsG0580024561.01.T01 | MTR_4g114250 | 32.057 | 418 | 228 | 17 | 1 | 390 | 1 | 390 | 1.32e-41 | 156 |
| MsG0580024561.01.T01 | MTR_4g114270 | 34.565 | 379 | 196 | 17 | 1 | 351 | 1 | 355 | 1.34e-41 | 156 |
| MsG0580024561.01.T01 | MTR_5g006160 | 29.762 | 336 | 205 | 15 | 11 | 341 | 10 | 319 | 6.52e-26 | 110 |
| MsG0580024561.01.T01 | MTR_3g031470 | 28.894 | 398 | 226 | 15 | 3 | 379 | 2 | 363 | 2.53e-25 | 108 |
| MsG0580024561.01.T01 | MTR_3g031640 | 28.643 | 398 | 221 | 17 | 16 | 390 | 7 | 364 | 1.90e-24 | 105 |
| MsG0580024561.01.T01 | MTR_4g114240 | 27.314 | 443 | 231 | 18 | 1 | 390 | 1 | 405 | 2.00e-23 | 102 |
| MsG0580024561.01.T01 | MTR_3g031580 | 28.099 | 363 | 207 | 15 | 1 | 348 | 2 | 325 | 1.87e-22 | 100 |
| MsG0580024561.01.T01 | MTR_3g031600 | 26.392 | 413 | 225 | 15 | 7 | 390 | 2 | 364 | 2.00e-22 | 99.8 |
| MsG0580024561.01.T01 | MTR_3g031610 | 27.500 | 360 | 198 | 15 | 16 | 348 | 7 | 330 | 2.09e-21 | 96.7 |
| MsG0580024561.01.T01 | MTR_3g031480 | 25.622 | 402 | 235 | 14 | 11 | 390 | 9 | 368 | 3.20e-21 | 96.3 |
| MsG0580024561.01.T01 | MTR_7g092050 | 28.024 | 339 | 178 | 17 | 30 | 348 | 34 | 326 | 4.48e-21 | 95.9 |
| MsG0580024561.01.T01 | MTR_3g102400 | 28.657 | 335 | 189 | 16 | 28 | 344 | 28 | 330 | 9.48e-21 | 94.7 |
| MsG0580024561.01.T01 | MTR_3g031490 | 27.000 | 400 | 227 | 16 | 14 | 390 | 6 | 363 | 1.41e-20 | 94.4 |
| MsG0580024561.01.T01 | MTR_4g114280 | 27.171 | 449 | 240 | 19 | 1 | 390 | 1 | 421 | 8.85e-19 | 89.0 |
| MsG0580024561.01.T01 | MTR_1g104555 | 32.877 | 146 | 92 | 2 | 54 | 198 | 30 | 170 | 1.12e-18 | 88.6 |
| MsG0580024561.01.T01 | MTR_1g099400 | 24.936 | 389 | 238 | 18 | 30 | 389 | 19 | 382 | 8.23e-17 | 82.8 |
| MsG0580024561.01.T01 | MTR_2g011160 | 29.659 | 381 | 187 | 19 | 1 | 348 | 1 | 333 | 1.19e-16 | 82.0 |
| MsG0580024561.01.T01 | MTR_2g011160 | 29.659 | 381 | 187 | 19 | 1 | 348 | 1 | 333 | 1.32e-16 | 82.4 |
| MsG0580024561.01.T01 | MTR_7g053050 | 24.634 | 410 | 255 | 16 | 1 | 390 | 1 | 376 | 6.64e-16 | 80.1 |
| MsG0580024561.01.T01 | MTR_3g031500 | 27.946 | 297 | 174 | 11 | 98 | 390 | 18 | 278 | 1.16e-15 | 79.3 |
| MsG0580024561.01.T01 | MTR_7g058550 | 24.755 | 408 | 246 | 16 | 6 | 390 | 7 | 376 | 2.10e-15 | 78.6 |
| MsG0580024561.01.T01 | MTR_7g058830 | 26.902 | 368 | 208 | 16 | 10 | 348 | 3 | 338 | 3.57e-15 | 77.8 |
| MsG0580024561.01.T01 | MTR_4g094858 | 25.185 | 405 | 248 | 18 | 7 | 390 | 6 | 376 | 3.88e-15 | 77.8 |
| MsG0580024561.01.T01 | MTR_5g067250 | 23.404 | 376 | 216 | 13 | 12 | 356 | 18 | 352 | 4.10e-14 | 74.7 |
| MsG0580024561.01.T01 | MTR_7g058530 | 26.257 | 358 | 213 | 15 | 28 | 366 | 31 | 356 | 1.51e-13 | 72.8 |
| MsG0580024561.01.T01 | MTR_3g107070 | 35.211 | 142 | 75 | 5 | 41 | 176 | 35 | 165 | 2.52e-13 | 72.0 |
| MsG0580024561.01.T01 | MTR_4g081650 | 25.936 | 374 | 209 | 15 | 10 | 351 | 3 | 340 | 1.20e-12 | 70.1 |
| MsG0580024561.01.T01 | MTR_2g089290 | 22.985 | 335 | 221 | 11 | 13 | 338 | 15 | 321 | 1.79e-12 | 69.7 |
| MsG0580024561.01.T01 | MTR_8g030500 | 25.414 | 362 | 195 | 17 | 27 | 356 | 14 | 332 | 1.94e-12 | 69.3 |
| MsG0580024561.01.T01 | MTR_2g089360 | 23.861 | 373 | 229 | 15 | 7 | 353 | 9 | 352 | 1.69e-11 | 66.2 |
| MsG0580024561.01.T01 | MTR_4g091860 | 36.434 | 129 | 71 | 4 | 43 | 162 | 40 | 166 | 3.36e-11 | 65.5 |
| MsG0580024561.01.T01 | MTR_1g012550 | 28.571 | 189 | 113 | 6 | 18 | 194 | 25 | 203 | 6.60e-11 | 64.7 |
| MsG0580024561.01.T01 | MTR_2g011180 | 26.446 | 363 | 189 | 21 | 26 | 351 | 30 | 351 | 7.16e-11 | 64.3 |
| MsG0580024561.01.T01 | MTR_2g011180 | 25.568 | 352 | 186 | 19 | 37 | 351 | 39 | 351 | 7.23e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024561.01.T01 | AT5G60900 | 35.736 | 333 | 181 | 12 | 1 | 313 | 1 | 320 | 2.06e-47 | 164 |
| MsG0580024561.01.T01 | AT5G24080 | 27.171 | 357 | 213 | 18 | 6 | 335 | 10 | 346 | 6.31e-19 | 89.4 |
| MsG0580024561.01.T01 | AT2G41890 | 26.087 | 345 | 223 | 12 | 14 | 346 | 14 | 338 | 1.32e-17 | 85.1 |
| MsG0580024561.01.T01 | AT1G11330 | 24.786 | 351 | 206 | 14 | 21 | 348 | 26 | 341 | 6.33e-15 | 77.0 |
| MsG0580024561.01.T01 | AT1G11330 | 24.786 | 351 | 206 | 14 | 21 | 348 | 26 | 341 | 8.08e-15 | 76.6 |
| MsG0580024561.01.T01 | AT1G11330 | 24.786 | 351 | 206 | 14 | 21 | 348 | 26 | 341 | 8.16e-15 | 76.6 |
| MsG0580024561.01.T01 | AT4G00340 | 28.060 | 335 | 201 | 14 | 30 | 354 | 23 | 327 | 4.65e-12 | 68.2 |
| MsG0580024561.01.T01 | AT4G00340 | 28.060 | 335 | 201 | 14 | 30 | 354 | 23 | 327 | 4.90e-12 | 68.2 |
| MsG0580024561.01.T01 | AT1G65790 | 24.419 | 344 | 217 | 14 | 26 | 353 | 30 | 346 | 2.48e-11 | 65.9 |
| MsG0580024561.01.T01 | AT1G65790 | 24.419 | 344 | 217 | 14 | 26 | 353 | 30 | 346 | 2.48e-11 | 65.9 |
| MsG0580024561.01.T01 | AT1G65790 | 24.419 | 344 | 217 | 14 | 26 | 353 | 30 | 346 | 2.98e-11 | 65.9 |
| MsG0580024561.01.T01 | AT1G34300 | 25.588 | 340 | 207 | 14 | 33 | 366 | 35 | 334 | 7.24e-11 | 64.3 |
| MsG0580024561.01.T01 | AT1G61610 | 25.622 | 402 | 226 | 20 | 8 | 375 | 9 | 371 | 9.01e-11 | 64.3 |
| MsG0580024561.01.T01 | AT1G61610 | 25.622 | 402 | 226 | 20 | 8 | 375 | 9 | 371 | 9.84e-11 | 63.9 |
Find 68 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAATCAATCTCTTGAATT+AGG | 0.159484 | 5:+6366639 | MsG0580024561.01.T01:CDS |
| AGAGCAACACTTGATTATTA+TGG | 0.224452 | 5:+6366951 | MsG0580024561.01.T01:CDS |
| TAACAATCCTGTTGAGAATA+AGG | 0.231326 | 5:-6367323 | None:intergenic |
| CTTCAACTTGTGTTAGTCTT+TGG | 0.244572 | 5:+6366222 | MsG0580024561.01.T01:CDS |
| CCTACTTGTAAATGTCCTTA+TGG | 0.255532 | 5:+6367131 | MsG0580024561.01.T01:CDS |
| CACCCGCCAAATTGATTACT+TGG | 0.259684 | 5:-6367170 | None:intergenic |
| CATTGCAATATTCAATGAAA+TGG | 0.272029 | 5:+6367058 | MsG0580024561.01.T01:CDS |
| TAGAATGAAAATTATGAATA+AGG | 0.294343 | 5:-6366196 | None:intergenic |
| CCTTCTGGTGAATTTGCTTT+CGG | 0.297777 | 5:+6366300 | MsG0580024561.01.T01:CDS |
| GAACCTCCCACTTGTGTAAT+TGG | 0.307678 | 5:-6366691 | None:intergenic |
| ATAGATCCAAGTAATCAATT+TGG | 0.330365 | 5:+6367164 | MsG0580024561.01.T01:CDS |
| CAAGAGATTGATTAGGCAAA+AGG | 0.339061 | 5:-6366632 | None:intergenic |
| ACCTCTTCATGCTTGCAATA+TGG | 0.343045 | 5:+6366349 | MsG0580024561.01.T01:CDS |
| GTAAACTCATATAAATCTTC+TGG | 0.343410 | 5:-6367251 | None:intergenic |
| CTCAATTTCACACTTGGTTG+TGG | 0.386954 | 5:+6367197 | MsG0580024561.01.T01:CDS |
| CCATAGGAAACAGCAGTGTT+TGG | 0.400167 | 5:-6366525 | None:intergenic |
| CTCTACAAGGTGAATCCATT+TGG | 0.400655 | 5:+6366493 | MsG0580024561.01.T01:CDS |
| CCACCACAAACAACAATTCA+TGG | 0.403545 | 5:+6366271 | MsG0580024561.01.T01:CDS |
| TATGTTGAAACAAATAATAA+TGG | 0.409916 | 5:+6366858 | MsG0580024561.01.T01:CDS |
| GATGCAACCTTATTCTCAAC+AGG | 0.416290 | 5:+6367316 | MsG0580024561.01.T01:CDS |
| CAGCCATGAATTGTTGTTTG+TGG | 0.417206 | 5:-6366274 | None:intergenic |
| AATTCATGGCTGTCACCTTC+TGG | 0.428458 | 5:+6366285 | MsG0580024561.01.T01:CDS |
| CCAAACACTGCTGTTTCCTA+TGG | 0.431277 | 5:+6366525 | MsG0580024561.01.T01:CDS |
| CTTGGTTGTGGAGCTGATAA+TGG | 0.435800 | 5:+6367209 | MsG0580024561.01.T01:CDS |
| CATCATCACGAAAATGAAGT+TGG | 0.451077 | 5:-6366713 | None:intergenic |
| ATTGCAATATTCAATGAAAT+GGG | 0.452160 | 5:+6367059 | MsG0580024561.01.T01:CDS |
| GTTTGGTTGTGCTGTCCAAA+TGG | 0.465542 | 5:-6366508 | None:intergenic |
| CTGTTCTTAGAGATGTGGAT+TGG | 0.479315 | 5:+6367273 | MsG0580024561.01.T01:CDS |
| GCTCTATAATAATACAACTT+AGG | 0.501136 | 5:-6366933 | None:intergenic |
| TACTACTAGAATCAAACCTC+CGG | 0.503106 | 5:+6366881 | MsG0580024561.01.T01:CDS |
| CCTAATTCAAGAGATTGATT+AGG | 0.505768 | 5:-6366639 | None:intergenic |
| ATATTCAATGAAATGGGTAG+TGG | 0.511049 | 5:+6367065 | MsG0580024561.01.T01:CDS |
| TGTCAACTCAATTTCACACT+TGG | 0.515793 | 5:+6367191 | MsG0580024561.01.T01:CDS |
| AAGAGATTGATTAGGCAAAA+GGG | 0.517414 | 5:-6366631 | None:intergenic |
| AACAAGGATGGACTATTATG+AGG | 0.522416 | 5:+6367015 | MsG0580024561.01.T01:CDS |
| AATCAATCTCTTGAATTAGG+TGG | 0.525333 | 5:+6366642 | MsG0580024561.01.T01:CDS |
| CCATGAATTGTTGTTTGTGG+TGG | 0.525923 | 5:-6366271 | None:intergenic |
| TCACAAGTTCAGCTAACATC+AGG | 0.527874 | 5:+6366453 | MsG0580024561.01.T01:CDS |
| TCTATCAATGAATAACCATA+AGG | 0.530290 | 5:-6367146 | None:intergenic |
| TGACACAATATTCTCATCCA+AGG | 0.539740 | 5:+6366979 | MsG0580024561.01.T01:CDS |
| TATGGAATCATGCATGACAC+TGG | 0.546625 | 5:+6366543 | MsG0580024561.01.T01:CDS |
| GATCCAAGTAATCAATTTGG+CGG | 0.546725 | 5:+6367167 | MsG0580024561.01.T01:CDS |
| CTCACGTTGACAACTCTACA+AGG | 0.547544 | 5:+6366480 | MsG0580024561.01.T01:CDS |
| CTATAATAGCTATTGTTCCA+TGG | 0.559466 | 5:+6367097 | MsG0580024561.01.T01:CDS |
| GTTTACTGTTCTTAGAGATG+TGG | 0.559851 | 5:+6367268 | MsG0580024561.01.T01:CDS |
| GACACAATATTCTCATCCAA+GGG | 0.563057 | 5:+6366980 | MsG0580024561.01.T01:CDS |
| ATCCAAGTAATCAATTTGGC+GGG | 0.566714 | 5:+6367168 | MsG0580024561.01.T01:CDS |
| ACCATATTGCAAGCATGAAG+AGG | 0.569589 | 5:-6366350 | None:intergenic |
| AATTTGTAACGTAATTGAGT+AGG | 0.579609 | 5:-6366768 | None:intergenic |
| TCATGTTAAGTCCACTTGCA+TGG | 0.579811 | 5:+6366745 | MsG0580024561.01.T01:CDS |
| AGTGTCATGCATGATTCCAT+AGG | 0.584765 | 5:-6366541 | None:intergenic |
| ACACTAAAGCAAAACAAGGA+TGG | 0.586253 | 5:+6367003 | MsG0580024561.01.T01:CDS |
| CCGAAAGCAAATTCACCAGA+AGG | 0.598357 | 5:-6366300 | None:intergenic |
| CCATAAGGACATTTACAAGT+AGG | 0.599238 | 5:-6367131 | None:intergenic |
| AACCTCGTACAAGCACCGAC+AGG | 0.601870 | 5:+6366429 | MsG0580024561.01.T01:CDS |
| TCTGAGACCAATTACACAAG+TGG | 0.606208 | 5:+6366684 | MsG0580024561.01.T01:CDS |
| ACTACTAGAATCAAACCTCC+GGG | 0.617185 | 5:+6366882 | MsG0580024561.01.T01:CDS |
| CTGAGACCAATTACACAAGT+GGG | 0.618374 | 5:+6366685 | MsG0580024561.01.T01:CDS |
| AGCTGAACTTGTGATCCTGT+CGG | 0.621679 | 5:-6366444 | None:intergenic |
| TTAGGCAAAAGGGTATCAGT+AGG | 0.628576 | 5:-6366621 | None:intergenic |
| TCAAACCTCCGGGTACACAA+TGG | 0.647402 | 5:+6366892 | MsG0580024561.01.T01:CDS |
| AATTGAGTAGGCCATGCAAG+TGG | 0.656289 | 5:-6366756 | None:intergenic |
| CAAGTTCAGCTAACATCAGG+AGG | 0.664048 | 5:+6366456 | MsG0580024561.01.T01:CDS |
| ATCCTGTCGGTGCTTGTACG+AGG | 0.666057 | 5:-6366431 | None:intergenic |
| TGTGGAGCTGATAATGGTGA+CGG | 0.671373 | 5:+6367215 | MsG0580024561.01.T01:CDS |
| GAAATGGGTAGTGGAACTTG+TGG | 0.682822 | 5:+6367074 | MsG0580024561.01.T01:CDS |
| AGGGACACTAAAGCAAAACA+AGG | 0.696719 | 5:+6366999 | MsG0580024561.01.T01:CDS |
| AGACCAATTACACAAGTGGG+AGG | 0.710039 | 5:+6366688 | MsG0580024561.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGAATGAAAATTATGAATA+AGG | - | Chr5:6366199-6366218 | None:intergenic | 15.0% |
| !! | TATGTTGAAACAAATAATAA+TGG | + | Chr5:6366858-6366877 | MsG0580024561.01.T01:CDS | 15.0% |
| !! | ACAAAAATTCTACAATTGTT+TGG | + | Chr5:6366583-6366602 | MsG0580024561.01.T01:CDS | 20.0% |
| !! | ATTGCAATATTCAATGAAAT+GGG | + | Chr5:6367059-6367078 | MsG0580024561.01.T01:CDS | 20.0% |
| !! | CAAAAATTCTACAATTGTTT+GGG | + | Chr5:6366584-6366603 | MsG0580024561.01.T01:CDS | 20.0% |
| !!! | ATCTTTTCATAATCTGATAA+AGG | - | Chr5:6367299-6367318 | None:intergenic | 20.0% |
| ! | AATTTGTAACGTAATTGAGT+AGG | - | Chr5:6366771-6366790 | None:intergenic | 25.0% |
| ! | ATAGATCCAAGTAATCAATT+TGG | + | Chr5:6367164-6367183 | MsG0580024561.01.T01:CDS | 25.0% |
| ! | CATTGCAATATTCAATGAAA+TGG | + | Chr5:6367058-6367077 | MsG0580024561.01.T01:CDS | 25.0% |
| ! | GCTCTATAATAATACAACTT+AGG | - | Chr5:6366936-6366955 | None:intergenic | 25.0% |
| ! | GTAAACTCATATAAATCTTC+TGG | - | Chr5:6367254-6367273 | None:intergenic | 25.0% |
| ! | TCTATCAATGAATAACCATA+AGG | - | Chr5:6367149-6367168 | None:intergenic | 25.0% |
| !!! | AGTTTAGTTTTTGATGAATC+AGG | + | Chr5:6366828-6366847 | MsG0580024561.01.T01:CDS | 25.0% |
| AAGAGATTGATTAGGCAAAA+GGG | - | Chr5:6366634-6366653 | None:intergenic | 30.0% | |
| AATCAATCTCTTGAATTAGG+TGG | + | Chr5:6366642-6366661 | MsG0580024561.01.T01:CDS | 30.0% | |
| AGAGCAACACTTGATTATTA+TGG | + | Chr5:6366951-6366970 | MsG0580024561.01.T01:CDS | 30.0% | |
| ATATTCAATGAAATGGGTAG+TGG | + | Chr5:6367065-6367084 | MsG0580024561.01.T01:CDS | 30.0% | |
| CCTAATCAATCTCTTGAATT+AGG | + | Chr5:6366639-6366658 | MsG0580024561.01.T01:CDS | 30.0% | |
| CCTAATTCAAGAGATTGATT+AGG | - | Chr5:6366642-6366661 | None:intergenic | 30.0% | |
| CTATAATAGCTATTGTTCCA+TGG | + | Chr5:6367097-6367116 | MsG0580024561.01.T01:CDS | 30.0% | |
| TAACAATCCTGTTGAGAATA+AGG | - | Chr5:6367326-6367345 | None:intergenic | 30.0% | |
| ! | AAATTTTTCCATTGTGTACC+CGG | - | Chr5:6366903-6366922 | None:intergenic | 30.0% |
| ! | ATTGCAATGCAAATGTTTTC+AGG | - | Chr5:6367047-6367066 | None:intergenic | 30.0% |
| !! | TTTTTAGCACTCCAAACAAT+GGG | - | Chr5:6366396-6366415 | None:intergenic | 30.0% |
| ACACTAAAGCAAAACAAGGA+TGG | + | Chr5:6367003-6367022 | MsG0580024561.01.T01:CDS | 35.0% | |
| ATCCAAGTAATCAATTTGGC+GGG | + | Chr5:6367168-6367187 | MsG0580024561.01.T01:CDS | 35.0% | |
| CAAGAGATTGATTAGGCAAA+AGG | - | Chr5:6366635-6366654 | None:intergenic | 35.0% | |
| CATCATCACGAAAATGAAGT+TGG | - | Chr5:6366716-6366735 | None:intergenic | 35.0% | |
| CCATAAGGACATTTACAAGT+AGG | - | Chr5:6367134-6367153 | None:intergenic | 35.0% | |
| CCTACTTGTAAATGTCCTTA+TGG | + | Chr5:6367131-6367150 | MsG0580024561.01.T01:CDS | 35.0% | |
| GACACAATATTCTCATCCAA+GGG | + | Chr5:6366980-6366999 | MsG0580024561.01.T01:CDS | 35.0% | |
| GATCCAAGTAATCAATTTGG+CGG | + | Chr5:6367167-6367186 | MsG0580024561.01.T01:CDS | 35.0% | |
| GTTTACTGTTCTTAGAGATG+TGG | + | Chr5:6367268-6367287 | MsG0580024561.01.T01:CDS | 35.0% | |
| TACCTGAAAAACCCATTGTT+TGG | + | Chr5:6366382-6366401 | MsG0580024561.01.T01:CDS | 35.0% | |
| TACTACTAGAATCAAACCTC+CGG | + | Chr5:6366881-6366900 | MsG0580024561.01.T01:CDS | 35.0% | |
| TGACACAATATTCTCATCCA+AGG | + | Chr5:6366979-6366998 | MsG0580024561.01.T01:CDS | 35.0% | |
| TGTCAACTCAATTTCACACT+TGG | + | Chr5:6367191-6367210 | MsG0580024561.01.T01:CDS | 35.0% | |
| !! | AACAAGGATGGACTATTATG+AGG | + | Chr5:6367015-6367034 | MsG0580024561.01.T01:CDS | 35.0% |
| !! | CTTCAACTTGTGTTAGTCTT+TGG | + | Chr5:6366222-6366241 | MsG0580024561.01.T01:CDS | 35.0% |
| !!! | GTTTTTAGCACTCCAAACAA+TGG | - | Chr5:6366397-6366416 | None:intergenic | 35.0% |
| ACCATATTGCAAGCATGAAG+AGG | - | Chr5:6366353-6366372 | None:intergenic | 40.0% | |
| ACCTCTTCATGCTTGCAATA+TGG | + | Chr5:6366349-6366368 | MsG0580024561.01.T01:CDS | 40.0% | |
| ACTACTAGAATCAAACCTCC+GGG | + | Chr5:6366882-6366901 | MsG0580024561.01.T01:CDS | 40.0% | |
| AGGGACACTAAAGCAAAACA+AGG | + | Chr5:6366999-6367018 | MsG0580024561.01.T01:CDS | 40.0% | |
| AGTGTCATGCATGATTCCAT+AGG | - | Chr5:6366544-6366563 | None:intergenic | 40.0% | |
| CCACCACAAACAACAATTCA+TGG | + | Chr5:6366271-6366290 | MsG0580024561.01.T01:CDS | 40.0% | |
| CTCAATTTCACACTTGGTTG+TGG | + | Chr5:6367197-6367216 | MsG0580024561.01.T01:CDS | 40.0% | |
| CTCTACAAGGTGAATCCATT+TGG | + | Chr5:6366493-6366512 | MsG0580024561.01.T01:CDS | 40.0% | |
| CTGAGACCAATTACACAAGT+GGG | + | Chr5:6366685-6366704 | MsG0580024561.01.T01:CDS | 40.0% | |
| CTGTTCTTAGAGATGTGGAT+TGG | + | Chr5:6367273-6367292 | MsG0580024561.01.T01:CDS | 40.0% | |
| GATGCAACCTTATTCTCAAC+AGG | + | Chr5:6367316-6367335 | MsG0580024561.01.T01:CDS | 40.0% | |
| TATGGAATCATGCATGACAC+TGG | + | Chr5:6366543-6366562 | MsG0580024561.01.T01:CDS | 40.0% | |
| TCACAAGTTCAGCTAACATC+AGG | + | Chr5:6366453-6366472 | MsG0580024561.01.T01:CDS | 40.0% | |
| TCATGTTAAGTCCACTTGCA+TGG | + | Chr5:6366745-6366764 | MsG0580024561.01.T01:CDS | 40.0% | |
| ! | AGTAGGTCTCTGATTTTCCA+TGG | - | Chr5:6367117-6367136 | None:intergenic | 40.0% |
| ! | CCTTCTGGTGAATTTGCTTT+CGG | + | Chr5:6366300-6366319 | MsG0580024561.01.T01:CDS | 40.0% |
| ! | TCTGAGACCAATTACACAAG+TGG | + | Chr5:6366684-6366703 | MsG0580024561.01.T01:CDS | 40.0% |
| ! | TGTTTTGCTTTAGTGTCCCT+TGG | - | Chr5:6366999-6367018 | None:intergenic | 40.0% |
| !! | CAGCCATGAATTGTTGTTTG+TGG | - | Chr5:6366277-6366296 | None:intergenic | 40.0% |
| !! | CCATGAATTGTTGTTTGTGG+TGG | - | Chr5:6366274-6366293 | None:intergenic | 40.0% |
| !! | CTCCAAACAATGGGTTTTTC+AGG | - | Chr5:6366387-6366406 | None:intergenic | 40.0% |
| !! | TTAGGCAAAAGGGTATCAGT+AGG | - | Chr5:6366624-6366643 | None:intergenic | 40.0% |
| AATTCATGGCTGTCACCTTC+TGG | + | Chr5:6366285-6366304 | MsG0580024561.01.T01:CDS | 45.0% | |
| AATTGAGTAGGCCATGCAAG+TGG | - | Chr5:6366759-6366778 | None:intergenic | 45.0% | |
| AGACCAATTACACAAGTGGG+AGG | + | Chr5:6366688-6366707 | MsG0580024561.01.T01:CDS | 45.0% | |
| AGCTGAACTTGTGATCCTGT+CGG | - | Chr5:6366447-6366466 | None:intergenic | 45.0% | |
| CAAGTTCAGCTAACATCAGG+AGG | + | Chr5:6366456-6366475 | MsG0580024561.01.T01:CDS | 45.0% | |
| CACCCGCCAAATTGATTACT+TGG | - | Chr5:6367173-6367192 | None:intergenic | 45.0% | |
| CCATAGGAAACAGCAGTGTT+TGG | - | Chr5:6366528-6366547 | None:intergenic | 45.0% | |
| CCGAAAGCAAATTCACCAGA+AGG | - | Chr5:6366303-6366322 | None:intergenic | 45.0% | |
| CTCACGTTGACAACTCTACA+AGG | + | Chr5:6366480-6366499 | MsG0580024561.01.T01:CDS | 45.0% | |
| CTTGGTTGTGGAGCTGATAA+TGG | + | Chr5:6367209-6367228 | MsG0580024561.01.T01:CDS | 45.0% | |
| GAACCTCCCACTTGTGTAAT+TGG | - | Chr5:6366694-6366713 | None:intergenic | 45.0% | |
| GTTTGGTTGTGCTGTCCAAA+TGG | - | Chr5:6366511-6366530 | None:intergenic | 45.0% | |
| ! | TTTTTCCATTGTGTACCCGG+AGG | - | Chr5:6366900-6366919 | None:intergenic | 45.0% |
| !! | CCAAACACTGCTGTTTCCTA+TGG | + | Chr5:6366525-6366544 | MsG0580024561.01.T01:CDS | 45.0% |
| !! | GAAATGGGTAGTGGAACTTG+TGG | + | Chr5:6367074-6367093 | MsG0580024561.01.T01:CDS | 45.0% |
| !! | TGTGGAGCTGATAATGGTGA+CGG | + | Chr5:6367215-6367234 | MsG0580024561.01.T01:CDS | 45.0% |
| TCAAACCTCCGGGTACACAA+TGG | + | Chr5:6366892-6366911 | MsG0580024561.01.T01:CDS | 50.0% | |
| ! | ATCCTGTCGGTGCTTGTACG+AGG | - | Chr5:6366434-6366453 | None:intergenic | 55.0% |
| !! | AACCTCGTACAAGCACCGAC+AGG | + | Chr5:6366429-6366448 | MsG0580024561.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 6366174 | 6367346 | 6366174 | ID=MsG0580024561.01;Name=MsG0580024561.01 |
| Chr5 | mRNA | 6366174 | 6367346 | 6366174 | ID=MsG0580024561.01.T01;Parent=MsG0580024561.01;Name=MsG0580024561.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|390 |
| Chr5 | exon | 6366174 | 6367346 | 6366174 | ID=MsG0580024561.01.T01:exon:1515;Parent=MsG0580024561.01.T01 |
| Chr5 | CDS | 6366174 | 6367346 | 6366174 | ID=MsG0580024561.01.T01:cds;Parent=MsG0580024561.01.T01 |
| Gene Sequence |
| Protein sequence |
