AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024617.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024617.01.T01 MTR_5g013930 86.190 420 22 4 109 501 29 439 0.0 685
MsG0580024617.01.T01 MTR_5g013930 83.547 547 25 7 1 493 1 536 0.0 677
MsG0580024617.01.T01 MTR_5g013930 85.202 446 24 5 1 415 1 435 0.0 584
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024617.01.T01 AT2G03070 51.376 545 158 14 17 491 15 522 1.37e-137 407

Find 126 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCATACCATCTGGGTATT+TGG 0.269319 5:-7046440 None:intergenic
TTGTCTCTGTTGAGTGAAAT+TGG 0.271464 5:-7047356 None:intergenic
TTTCCTCAGTTCGGATTATC+TGG 0.280883 5:+7047041 MsG0580024617.01.T01:intron
CCCATTGTCATCAAACAGTA+TGG 0.282447 5:+7044363 MsG0580024617.01.T01:CDS
CCGAGAATATCTTGCCATTT+GGG 0.284417 5:-7043230 None:intergenic
TACTTTGATCACTCAACATA+TGG 0.299259 5:-7047091 None:intergenic
CGGCCAGAATTCGTTGTTAC+AGG 0.300437 5:+7044387 MsG0580024617.01.T01:CDS
GACATCGGGATCACAACTTT+TGG 0.306864 5:+7045066 MsG0580024617.01.T01:intron
TGCTGCTGTGGCTGCGGTTG+TGG 0.310705 5:-7043077 None:intergenic
ACTTGGGCATCAGCAATTTC+AGG 0.315300 5:+7046283 MsG0580024617.01.T01:CDS
AGCTGTTGCGGCTGCGGTTG+TGG 0.325380 5:-7045226 None:intergenic
TTGCTGTTGCTGCTGCTGTA+TGG 0.338635 5:-7047233 None:intergenic
ACCGAGAATATCTTGCCATT+TGG 0.342009 5:-7043231 None:intergenic
GCATTTGGCAGACGCATTTA+CGG 0.343291 5:+7044189 MsG0580024617.01.T01:CDS
CACGGTTCACAAGGTGCATT+TGG 0.343997 5:+7047262 MsG0580024617.01.T01:CDS
ATCTTCGAGAATCCTTGATA+TGG 0.350670 5:-7043177 None:intergenic
CACGTGTCTTTACTTGTTCT+AGG 0.362677 5:-7043136 None:intergenic
ACAACCGCAGCCACAGCAGC+AGG 0.370395 5:+7043079 MsG0580024617.01.T01:CDS
GCTGTTGCGGCTGCGGTTGT+GGG 0.375312 5:-7045225 None:intergenic
TGCTTCACTTCCTATGCATT+TGG 0.378719 5:+7044174 MsG0580024617.01.T01:CDS
TGTAGTAGACCTAGGTGAAT+TGG 0.385584 5:-7045167 None:intergenic
ACTCGTAAAGCTTACTGCTT+TGG 0.396336 5:+7043695 MsG0580024617.01.T01:CDS
ATCTGCGATGCAACAAGGAC+TGG 0.397379 5:+7045345 MsG0580024617.01.T01:CDS
GCCTGACCCTTGTCGAGAGT+GGG 0.400714 5:-7043743 None:intergenic
TTACTGCTTTGGAACTCGTC+AGG 0.408084 5:+7043706 MsG0580024617.01.T01:CDS
GGCTGCCAAAATTCAAGAAC+AGG 0.413781 5:+7043763 MsG0580024617.01.T01:CDS
TGTTAGCAGGACCAGAAAAC+TGG 0.417669 5:-7046388 None:intergenic
TCTGATTTCCTTGATTGAGT+TGG 0.418871 5:-7046352 None:intergenic
CCATACTGTTTGATGACAAT+GGG 0.419535 5:-7044363 None:intergenic
GGTCATTCACATTTCGATGA+AGG 0.419652 5:+7044413 MsG0580024617.01.T01:CDS
CCCCACTCTCGACAAGGGTC+AGG 0.419879 5:+7043742 MsG0580024617.01.T01:CDS
TTAGCTGCTGCTGCACAGCC+TGG 0.425082 5:-7043112 None:intergenic
TCCTTGATATGGCTTTGAAC+AGG 0.432047 5:-7043166 None:intergenic
CACTCAAATTGACAAGTTGA+AGG 0.433896 5:+7043542 MsG0580024617.01.T01:CDS
TTCTTTCCTCCACAGTTGCA+CGG 0.437454 5:+7046233 MsG0580024617.01.T01:intron
TTGTCAATTTGAGTGGCAAT+TGG 0.437509 5:-7043534 None:intergenic
TGTCTCTGTTGAGTGAAATT+GGG 0.443091 5:-7047355 None:intergenic
CTCTCCTGCTGCTGTGGCTG+CGG 0.451069 5:-7043083 None:intergenic
AGAATTCGTTGTTACAGGTC+TGG 0.457366 5:+7044392 MsG0580024617.01.T01:CDS
CTAAATAACGCGCTGTTAGC+AGG 0.459443 5:-7046401 None:intergenic
CCCAAATGGCAAGATATTCT+CGG 0.462937 5:+7043230 MsG0580024617.01.T01:CDS
TCAGGGCAGACAGCTTTCTT+CGG 0.462975 5:+7046301 MsG0580024617.01.T01:CDS
TTGCCATTTGGGATTGGTGT+TGG 0.464040 5:-7043219 None:intergenic
AGCCTGACCCTTGTCGAGAG+TGG 0.466984 5:-7043744 None:intergenic
AAGAAGAATGGAGGGTGAGT+TGG 0.468484 5:+7043046 None:intergenic
GCTGTTAGCTGTTGCGGCTG+CGG 0.473874 5:-7045232 None:intergenic
GTTATATGCCTCTGGTCTCC+AGG 0.475049 5:-7044151 None:intergenic
AATATCTTGCCATTTGGGAT+TGG 0.476173 5:-7043225 None:intergenic
AGACCTGTAACAACGAATTC+TGG 0.481339 5:-7044390 None:intergenic
GACCTAGGTGAATTGGCATA+TGG 0.484019 5:-7045160 None:intergenic
TTACTATTGCTAGACCCATC+AGG 0.484047 5:-7044235 None:intergenic
CTCCGAGCTGCCGTCAATGT+TGG 0.490242 5:+7043794 MsG0580024617.01.T01:CDS
GGTGAATTGGCATATGGAAT+TGG 0.494091 5:-7045154 None:intergenic
ATTACCCTCGCCAACATTGA+CGG 0.494223 5:-7043804 None:intergenic
CAACGATGTTGAAGAGTTCG+AGG 0.494924 5:-7043271 None:intergenic
GTGAAGCAGTTATATGCCTC+TGG 0.497013 5:-7044159 None:intergenic
TCTTTCCTCCACAGTTGCAC+GGG 0.498397 5:+7046234 MsG0580024617.01.T01:intron
TATGCAGGATTGCGGATACC+TGG 0.498863 5:+7044133 MsG0580024617.01.T01:intron
GCGCATATGCAGCATGGCAT+TGG 0.503430 5:+7046323 MsG0580024617.01.T01:CDS
GGGATAGACTATGAAAGCCT+TGG 0.507245 5:-7043312 None:intergenic
ACTTTGATCACTCAACATAT+GGG 0.508945 5:-7047090 None:intergenic
TTCTTGCTCAGCAACAATAC+AGG 0.509421 5:+7045320 MsG0580024617.01.T01:CDS
TTCAATCTCTCCTGCTGCTG+TGG 0.510122 5:-7043089 None:intergenic
TCTGCGATGCAACAAGGACT+GGG 0.511563 5:+7045346 MsG0580024617.01.T01:CDS
GCAGTAAGCTTTACGAGTAT+CGG 0.512083 5:-7043690 None:intergenic
AACATGGGAGGTGGCAACCC+TGG 0.516684 5:+7047199 MsG0580024617.01.T01:CDS
TCAATTTGAGTGGCAATTGG+AGG 0.517753 5:-7043531 None:intergenic
GCCTGTTCAAAGCCATATCA+AGG 0.519288 5:+7043165 MsG0580024617.01.T01:CDS
ACAAGGTGCATTTGGTGGCA+TGG 0.523211 5:+7047270 MsG0580024617.01.T01:CDS
CCCATACTGTTTGATGACAA+TGG 0.529491 5:-7044364 None:intergenic
CACAACAACAGCAACAACAA+CGG 0.529656 5:+7045254 MsG0580024617.01.T01:CDS
CTTGGGCATCAGCAATTTCA+GGG 0.531616 5:+7046284 MsG0580024617.01.T01:CDS
GGTCAAAGCCAACTCAATCA+AGG 0.532163 5:+7046344 MsG0580024617.01.T01:CDS
CTTCAACTTGTCAATTTGAG+TGG 0.538033 5:-7043541 None:intergenic
CGCCAACATTGACGGCAGCT+CGG 0.539687 5:-7043796 None:intergenic
TACTGCTTTGGAACTCGTCA+GGG 0.540137 5:+7043707 MsG0580024617.01.T01:CDS
CAACAACAACACGGTTCACA+AGG 0.540323 5:+7047253 MsG0580024617.01.T01:CDS
AGCTGCCGTCAATGTTGGCG+AGG 0.541335 5:+7043799 MsG0580024617.01.T01:CDS
CCTGACCCTTGTCGAGAGTG+GGG 0.542610 5:-7043742 None:intergenic
GTGGCGCTGGTTGCAGCAGA+AGG 0.547495 5:-7045106 None:intergenic
TCTTCGGCGCATATGCAGCA+TGG 0.548116 5:+7046317 MsG0580024617.01.T01:CDS
GCACCAACACCAATCCCAAA+TGG 0.548274 5:+7043216 MsG0580024617.01.T01:CDS
ATTGGTGTTGGTGCGACCAT+AGG 0.549446 5:-7043207 None:intergenic
TTATTGCTAATGTAGACATC+GGG 0.550611 5:+7045052 MsG0580024617.01.T01:intron
AGAAGTTGTTGCTGCTGCTG+TGG 0.555587 5:-7045301 None:intergenic
GAAAAGGGAAGAAGAATGGA+GGG 0.569108 5:+7043038 None:intergenic
TGTTGTATTGTCAAAAGAAG+TGG 0.570342 5:-7045125 None:intergenic
GTTGTGGAGAAAACTGCATC+TGG 0.572530 5:-7046262 None:intergenic
TGTTGTGCTGTTAGCTGTTG+CGG 0.572810 5:-7045238 None:intergenic
GGTTCACAAGGTGCATTTGG+TGG 0.572846 5:+7047265 MsG0580024617.01.T01:CDS
GTTCTGAAGCGTCATCATAC+CGG 0.573162 5:-7047317 None:intergenic
GATGCAACAAGGACTGGGGC+AGG 0.575387 5:+7045351 MsG0580024617.01.T01:CDS
AATGCTCAGAATCTACAATC+CGG 0.577713 5:+7047298 MsG0580024617.01.T01:CDS
GCAGCAGGAGAGATTGAACC+AGG 0.579066 5:+7043094 MsG0580024617.01.T01:CDS
TATTCTCGGTCAGTATTCCA+TGG 0.581948 5:+7043244 MsG0580024617.01.T01:CDS
TACATTGCAGTGTTCAACAT+GGG 0.582708 5:+7047184 MsG0580024617.01.T01:intron
GCAGTGTTCAACATGGGAGG+TGG 0.582930 5:+7047190 MsG0580024617.01.T01:intron
ATGATTGCTGCAGCCTGTGA+AGG 0.588963 5:+7043650 MsG0580024617.01.T01:CDS
ATCATATTTGTAGTAGACCT+AGG 0.594694 5:-7045175 None:intergenic
AGTTGTTGCTGCTGCTGTGG+AGG 0.600661 5:-7045298 None:intergenic
CCATTGTCATCAAACAGTAT+GGG 0.604245 5:+7044364 MsG0580024617.01.T01:CDS
TTACATTGCAGTGTTCAACA+TGG 0.605122 5:+7047183 MsG0580024617.01.T01:intron
TGTATGGACATCATACCACC+AGG 0.608190 5:-7047217 None:intergenic
AATGCGTCTGCCAAATGCAT+AGG 0.612188 5:-7044184 None:intergenic
CGATATCAAGAAGGTCTCCA+AGG 0.613029 5:+7043295 MsG0580024617.01.T01:CDS
CATCGTTGACGATATCAAGA+AGG 0.615371 5:+7043286 MsG0580024617.01.T01:CDS
GAAGAGTTCGAGGTTGACCA+TGG 0.618217 5:-7043261 None:intergenic
CTGACCCTTGTCGAGAGTGG+GGG 0.620202 5:-7043741 None:intergenic
AATTGCTGATGCCCAAGTTG+TGG 0.621813 5:-7046278 None:intergenic
ATTGTCAAAAGAAGTGGCGC+TGG 0.624557 5:-7045119 None:intergenic
TGATCACTCAACATATGGGA+AGG 0.626243 5:-7047086 None:intergenic
GCTGCCGTCAATGTTGGCGA+GGG 0.627131 5:+7043800 MsG0580024617.01.T01:CDS
AACAACACCAAATACCCAGA+TGG 0.635232 5:+7046433 MsG0580024617.01.T01:CDS
ACATGCCTATCATACCATCT+GGG 0.636329 5:-7046447 None:intergenic
ATGGAACTTATGCAGGATTG+CGG 0.642741 5:+7044125 MsG0580024617.01.T01:intron
TTGTCATCAAACAGTATGGG+CGG 0.656744 5:+7044367 MsG0580024617.01.T01:CDS
TGCGGATACCTGGAGACCAG+AGG 0.661175 5:+7044143 MsG0580024617.01.T01:CDS
AGGCAATCTGCGATGCAACA+AGG 0.665568 5:+7045340 MsG0580024617.01.T01:CDS
ATTGCAGTGTTCAACATGGG+AGG 0.667880 5:+7047187 MsG0580024617.01.T01:intron
CAGCAACAGCAACAACAACA+CGG 0.675697 5:+7047244 MsG0580024617.01.T01:CDS
CTGCGATGCAACAAGGACTG+GGG 0.678827 5:+7045347 MsG0580024617.01.T01:CDS
ATGGGAGGTGGCAACCCTGG+TGG 0.686293 5:+7047202 MsG0580024617.01.T01:CDS
TTCCATATGCCAATTCACCT+AGG 0.690920 5:+7045158 MsG0580024617.01.T01:CDS
TGGGAAGGATGACTTCGCTG+AGG 0.728701 5:-7047071 None:intergenic
CATACTGTTTGATGACAATG+GGG 0.738036 5:-7044362 None:intergenic
GTATGGACATCATACCACCA+GGG 0.773270 5:-7047216 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTAAA+TGG + Chr5:7046905-7046924 MsG0580024617.01.T01:intron 0.0%
!! AATATATTTATTATAGTACA+AGG - Chr5:7043847-7043866 None:intergenic 10.0%
!! ACTTAATATTTAACAATAAA+AGG - Chr5:7045752-7045771 None:intergenic 10.0%
!!! ATTATAAAATCCAAATATTT+TGG - Chr5:7044285-7044304 None:intergenic 10.0%
!!! GAAAAAATTTCTATATTTTT+CGG - Chr5:7045635-7045654 None:intergenic 10.0%
!!! GAAAATAATATTTTTAAACA+GGG - Chr5:7046537-7046556 None:intergenic 10.0%
!!! TGAAAATAATATTTTTAAAC+AGG - Chr5:7046538-7046557 None:intergenic 10.0%
!!! TTTTTAATACTGTAAATAAA+GGG + Chr5:7044475-7044494 MsG0580024617.01.T01:intron 10.0%
!!! TTTTTTAATACTGTAAATAA+AGG + Chr5:7044474-7044493 MsG0580024617.01.T01:intron 10.0%
!! AAAATTAAAATATGAGACTA+TGG - Chr5:7044604-7044623 None:intergenic 15.0%
!! AACAAACAAAAATTTATTCA+AGG - Chr5:7044039-7044058 None:intergenic 15.0%
!!! GTTAATTTTATTTGTTAACA+AGG - Chr5:7045679-7045698 None:intergenic 15.0%
!!! TCATTTATTTCTAAACTATT+GGG + Chr5:7045994-7046013 MsG0580024617.01.T01:intron 15.0%
!!! TGTTTTTTACAAAAAACATA+AGG - Chr5:7045785-7045804 None:intergenic 15.0%
!! AAAAATAATAGGATTAGATG+AGG - Chr5:7044725-7044744 None:intergenic 20.0%
!! ATATTTATTATAGTACAAGG+CGG - Chr5:7043844-7043863 None:intergenic 20.0%
!! ATTCAATAGGTTTAAAAGTT+CGG - Chr5:7044950-7044969 None:intergenic 20.0%
!! CAATAGTTTAGAAATAAATG+AGG - Chr5:7045995-7046014 None:intergenic 20.0%
!! CTCATCTATAGAAAAATAAT+AGG - Chr5:7044736-7044755 None:intergenic 20.0%
!! GAACTAAAATTTCTTTCATA+TGG + Chr5:7043916-7043935 MsG0580024617.01.T01:intron 20.0%
!! TTATGTTATTGTTTACTTGT+TGG - Chr5:7046487-7046506 None:intergenic 20.0%
!!! AAATCTTTTCACAAAGTAAA+CGG + Chr5:7045724-7045743 MsG0580024617.01.T01:intron 20.0%
!!! AATAATATTTTTAAACAGGG+TGG - Chr5:7046534-7046553 None:intergenic 20.0%
!!! ATTATTTTTCTATAGATGAG+AGG + Chr5:7044736-7044755 MsG0580024617.01.T01:intron 20.0%
!!! ATTCTTTTTGGTGATTTTTT+TGG + Chr5:7044097-7044116 MsG0580024617.01.T01:intron 20.0%
!!! CTCATTTATTTCTAAACTAT+TGG + Chr5:7045993-7046012 MsG0580024617.01.T01:intron 20.0%
!!! TTAGTTCTCATTGTTTTTTT+TGG + Chr5:7046720-7046739 MsG0580024617.01.T01:intron 20.0%
!!! TTTAAATGGATTTTTGTGAT+GGG + Chr5:7046919-7046938 MsG0580024617.01.T01:intron 20.0%
!!! TTTTAAATGGATTTTTGTGA+TGG + Chr5:7046918-7046937 MsG0580024617.01.T01:intron 20.0%
! AAATAGAATAAATGACAGTG+AGG - Chr5:7047128-7047147 None:intergenic 25.0%
! ACGAAAGGTAAAAATCAAAT+AGG - Chr5:7044912-7044931 None:intergenic 25.0%
! AGAAAAGAAAGCAATAACTT+TGG + Chr5:7046086-7046105 MsG0580024617.01.T01:intron 25.0%
! ATATTTCAAAATCGCAAAAC+CGG - Chr5:7044574-7044593 None:intergenic 25.0%
! ATCATAGAAGTAATTGTTGA+AGG - Chr5:7046623-7046642 None:intergenic 25.0%
! ATTATTGCTAATGTAGACAT+CGG + Chr5:7045051-7045070 MsG0580024617.01.T01:intron 25.0%
! GAAAAGAAAGCAATAACTTT+GGG + Chr5:7046087-7046106 MsG0580024617.01.T01:intron 25.0%
! TGAGAACTAATTACTTCATT+TGG + Chr5:7044969-7044988 MsG0580024617.01.T01:intron 25.0%
!! AATCTTTTCACAAAGTAAAC+GGG + Chr5:7045725-7045744 MsG0580024617.01.T01:intron 25.0%
!! ATTGTGGTTACTTATGATTT+TGG + Chr5:7044507-7044526 MsG0580024617.01.T01:intron 25.0%
!! ATTTTCCTGTTCTTGAATTT+TGG - Chr5:7043771-7043790 None:intergenic 25.0%
!! CTCTAAATCTGTATTCTTTT+TGG + Chr5:7044085-7044104 MsG0580024617.01.T01:intron 25.0%
!! GTAATTAGTTCTCATTCAAT+AGG - Chr5:7044963-7044982 None:intergenic 25.0%
!! TTTTGTCAGATTAGAATAGA+AGG + Chr5:7046751-7046770 MsG0580024617.01.T01:intron 25.0%
!!! AAATCCAAATATTTTGGAGA+TGG - Chr5:7044279-7044298 None:intergenic 25.0%
!!! GGTGATTTTTTTGGATATAA+TGG + Chr5:7044106-7044125 MsG0580024617.01.T01:intron 25.0%
!!! TATGAACACACATGTTTTTA+TGG - Chr5:7046137-7046156 None:intergenic 25.0%
!!! TCTACTTTAACTAGTCTTTT+AGG - Chr5:7045429-7045448 None:intergenic 25.0%
AAAATCAAATAGGCTAGATG+AGG - Chr5:7044902-7044921 None:intergenic 30.0%
ACTTTGATCACTCAACATAT+GGG - Chr5:7047093-7047112 None:intergenic 30.0%
AGGAAAGCAAATTAAGAGTA+TGG - Chr5:7046603-7046622 None:intergenic 30.0%
AGTTAGAGATGATACATTAC+TGG + Chr5:7045571-7045590 MsG0580024617.01.T01:intron 30.0%
ATACAGATTTAGAGAGTGAT+AGG - Chr5:7044079-7044098 None:intergenic 30.0%
ATCATATTTGTAGTAGACCT+AGG - Chr5:7045178-7045197 None:intergenic 30.0%
ATGGGGACAAACTAATTTAT+TGG + Chr5:7044857-7044876 MsG0580024617.01.T01:intron 30.0%
ATGTTTCTCGTTTCTTTCTT+TGG + Chr5:7046197-7046216 MsG0580024617.01.T01:intron 30.0%
CAAACTAATTTATTGGGAGA+AGG + Chr5:7044864-7044883 MsG0580024617.01.T01:intron 30.0%
CACAACTATTCATTCTATAC+TGG - Chr5:7046956-7046975 None:intergenic 30.0%
CTCTACAAGGATTAAATCAT+GGG - Chr5:7046832-7046851 None:intergenic 30.0%
GAACTAATTACTTCATTTGG+TGG + Chr5:7044972-7044991 MsG0580024617.01.T01:intron 30.0%
GATTTAATCCTTGTAGAGAT+TGG + Chr5:7046834-7046853 MsG0580024617.01.T01:intron 30.0%
TACTTTGATCACTCAACATA+TGG - Chr5:7047094-7047113 None:intergenic 30.0%
TAGTGTATATAAATGCCACT+CGG - Chr5:7044314-7044333 None:intergenic 30.0%
TCTACAAGGATTAAATCATG+GGG - Chr5:7046831-7046850 None:intergenic 30.0%
TCTCTACAAGGATTAAATCA+TGG - Chr5:7046833-7046852 None:intergenic 30.0%
TGATTTATCCATGATGTTCT+TGG + Chr5:7046793-7046812 MsG0580024617.01.T01:intron 30.0%
TGGGGACAAACTAATTTATT+GGG + Chr5:7044858-7044877 MsG0580024617.01.T01:intron 30.0%
TGTTATCCACATATGATCAA+AGG - Chr5:7046999-7047018 None:intergenic 30.0%
TGTTGTATTGTCAAAAGAAG+TGG - Chr5:7045128-7045147 None:intergenic 30.0%
TTATTGCTAATGTAGACATC+GGG + Chr5:7045052-7045071 MsG0580024617.01.T01:intron 30.0%
! ATGGTGATTTGAAATGTGAA+TGG - Chr5:7043406-7043425 None:intergenic 30.0%
! GGAAAGCAAATTAAGAGTAT+GGG - Chr5:7046602-7046621 None:intergenic 30.0%
! GTTCATACTTGTAGCATTTT+CGG - Chr5:7043351-7043370 None:intergenic 30.0%
! TAAAGGGTATATGTGAATTG+TGG + Chr5:7044491-7044510 MsG0580024617.01.T01:intron 30.0%
! TGTTTTTCGCAAAGTAAACA+AGG - Chr5:7045452-7045471 None:intergenic 30.0%
! TTACGTTTGATAATCATCTC+TGG + Chr5:7045809-7045828 MsG0580024617.01.T01:intron 30.0%
! TTTAGTGAAGCTCTATTTCT+TGG - Chr5:7045949-7045968 None:intergenic 30.0%
! TTTTATAATTTGACTCCGAG+TGG + Chr5:7044296-7044315 MsG0580024617.01.T01:intron 30.0%
!! ATAACTTTGGGATATACTGT+TGG + Chr5:7046099-7046118 MsG0580024617.01.T01:intron 30.0%
!! TAACTTTGGGATATACTGTT+GGG + Chr5:7046100-7046119 MsG0580024617.01.T01:intron 30.0%
!! TAGTCTTTTAGGTCATTTCA+GGG - Chr5:7045418-7045437 None:intergenic 30.0%
!! TTCGATGAAGGTTTTATGAA+TGG + Chr5:7044425-7044444 MsG0580024617.01.T01:intron 30.0%
AAACATCACAAAGTACAACG+TGG - Chr5:7046885-7046904 None:intergenic 35.0%
AAACCCATCTGATCCTTATT+AGG + Chr5:7044632-7044651 MsG0580024617.01.T01:intron 35.0%
AAAGGGAATGAAGAATGAAG+AGG - Chr5:7043613-7043632 None:intergenic 35.0%
AAATACCCAGATGGTATGAT+AGG + Chr5:7046442-7046461 MsG0580024617.01.T01:intron 35.0%
AACCACTAGACTGTAACAAT+GGG + Chr5:7044839-7044858 MsG0580024617.01.T01:intron 35.0%
AAGAGACTGTGAAGTTATTC+CGG - Chr5:7046684-7046703 None:intergenic 35.0%
AAGAGAGATCAATTGCTTCA+GGG + Chr5:7043499-7043518 MsG0580024617.01.T01:intron 35.0%
AAGCAATTGATCTCTCTTCA+AGG - Chr5:7043497-7043516 None:intergenic 35.0%
AAGGGAATGAAGAATGAAGA+GGG - Chr5:7043612-7043631 None:intergenic 35.0%
AATAGTGACCAATCTCTACA+AGG - Chr5:7046845-7046864 None:intergenic 35.0%
AATGCTCAGAATCTACAATC+CGG + Chr5:7047298-7047317 MsG0580024617.01.T01:CDS 35.0%
AGACAACAAAATCAACAGTG+AGG + Chr5:7047373-7047392 MsG0580024617.01.T01:CDS 35.0%
AGCTAACCTTTGATCATATG+TGG + Chr5:7046990-7047009 MsG0580024617.01.T01:intron 35.0%
ATCAATTCTAGCCTGCAAAA+GGG - Chr5:7043630-7043649 None:intergenic 35.0%
ATCTTCGAGAATCCTTGATA+TGG - Chr5:7043180-7043199 None:intergenic 35.0%
CAACCTAATAAGGATCAGAT+GGG - Chr5:7044638-7044657 None:intergenic 35.0%
CCATTGTCATCAAACAGTAT+GGG + Chr5:7044364-7044383 MsG0580024617.01.T01:CDS 35.0%
CTCTCCATCTCCAAAATATT+TGG + Chr5:7044272-7044291 MsG0580024617.01.T01:intron 35.0%
CTTCAACTTGTCAATTTGAG+TGG - Chr5:7043544-7043563 None:intergenic 35.0%
GTTTAAAAGTTCGGCAATGA+GGG - Chr5:7044941-7044960 None:intergenic 35.0%
TACACTGTTTGCATTAGACT+TGG + Chr5:7043962-7043981 MsG0580024617.01.T01:intron 35.0%
TACATTGCAGTGTTCAACAT+GGG + Chr5:7047184-7047203 MsG0580024617.01.T01:intron 35.0%
TATCAATTCTAGCCTGCAAA+AGG - Chr5:7043631-7043650 None:intergenic 35.0%
TATCATACCATCTGGGTATT+TGG - Chr5:7046443-7046462 None:intergenic 35.0%
TCAACCTAATAAGGATCAGA+TGG - Chr5:7044639-7044658 None:intergenic 35.0%
TCTGATTTCCTTGATTGAGT+TGG - Chr5:7046355-7046374 None:intergenic 35.0%
TGAAAACTACCTCTGATACA+TGG - Chr5:7045853-7045872 None:intergenic 35.0%
TGTCTCTGTTGAGTGAAATT+GGG - Chr5:7047358-7047377 None:intergenic 35.0%
TTACATTGCAGTGTTCAACA+TGG + Chr5:7047183-7047202 MsG0580024617.01.T01:intron 35.0%
TTGTCAATTTGAGTGGCAAT+TGG - Chr5:7043537-7043556 None:intergenic 35.0%
TTGTCTCTGTTGAGTGAAAT+TGG - Chr5:7047359-7047378 None:intergenic 35.0%
! AATATCTTGCCATTTGGGAT+TGG - Chr5:7043228-7043247 None:intergenic 35.0%
! CACTCAAATTGACAAGTTGA+AGG + Chr5:7043542-7043561 MsG0580024617.01.T01:CDS 35.0%
! CATACTGTTTGATGACAATG+GGG - Chr5:7044365-7044384 None:intergenic 35.0%
! CCATACTGTTTGATGACAAT+GGG - Chr5:7044366-7044385 None:intergenic 35.0%
! CCTTCAAGTTCAACCTAATA+AGG - Chr5:7044648-7044667 None:intergenic 35.0%
! GGATATAATGGAACTTATGC+AGG + Chr5:7044118-7044137 MsG0580024617.01.T01:intron 35.0%
! TAGACTTGGTTTAGCTCATA+AGG + Chr5:7043976-7043995 MsG0580024617.01.T01:intron 35.0%
! TTTAGAACAAGAGTGACGAT+TGG - Chr5:7043886-7043905 None:intergenic 35.0%
!! CAGTACTGATAACATTGTCA+TGG - Chr5:7043425-7043444 None:intergenic 35.0%
!! CCTTATTAGGTTGAACTTGA+AGG + Chr5:7044645-7044664 MsG0580024617.01.T01:intron 35.0%
!! CTAGTCTTTTAGGTCATTTC+AGG - Chr5:7045419-7045438 None:intergenic 35.0%
!! GAACACACATGTTTTTATGG+TGG - Chr5:7046134-7046153 None:intergenic 35.0%
!! TGAAGGTGCTGAAAAAGTAT+TGG + Chr5:7043667-7043686 MsG0580024617.01.T01:CDS 35.0%
!!! ATTTTCGGCATTGACATTCT+TGG - Chr5:7043336-7043355 None:intergenic 35.0%
!!! TTTTCGGCATTGACATTCTT+GGG - Chr5:7043335-7043354 None:intergenic 35.0%
AACAACACCAAATACCCAGA+TGG + Chr5:7046433-7046452 MsG0580024617.01.T01:CDS 40.0%
ACATGCCTATCATACCATCT+GGG - Chr5:7046450-7046469 None:intergenic 40.0%
ACCACTAGACTGTAACAATG+GGG + Chr5:7044840-7044859 MsG0580024617.01.T01:intron 40.0%
ACCGAGAATATCTTGCCATT+TGG - Chr5:7043234-7043253 None:intergenic 40.0%
ACTCGTAAAGCTTACTGCTT+TGG + Chr5:7043695-7043714 MsG0580024617.01.T01:CDS 40.0%
AGAATTCGTTGTTACAGGTC+TGG + Chr5:7044392-7044411 MsG0580024617.01.T01:CDS 40.0%
AGACCTGTAACAACGAATTC+TGG - Chr5:7044393-7044412 None:intergenic 40.0%
AGAGAGATCAATTGCTTCAG+GGG + Chr5:7043500-7043519 MsG0580024617.01.T01:intron 40.0%
AGGACTTCTTGAGTACAAGA+AGG + Chr5:7043996-7044015 MsG0580024617.01.T01:intron 40.0%
ATGGAACTTATGCAGGATTG+CGG + Chr5:7044125-7044144 MsG0580024617.01.T01:intron 40.0%
CAAACATGCCAAGAACATCA+TGG - Chr5:7046804-7046823 None:intergenic 40.0%
CAACCACTAGACTGTAACAA+TGG + Chr5:7044838-7044857 MsG0580024617.01.T01:intron 40.0%
CAATCTTCTCTCCATCACAA+TGG - Chr5:7045545-7045564 None:intergenic 40.0%
CACAAAACTACTCCCTGAAA+TGG + Chr5:7043459-7043478 MsG0580024617.01.T01:intron 40.0%
CACAACAACAGCAACAACAA+CGG + Chr5:7045254-7045273 MsG0580024617.01.T01:CDS 40.0%
CACGTGTCTTTACTTGTTCT+AGG - Chr5:7043139-7043158 None:intergenic 40.0%
CAGATTCCAAACATTTCAGC+CGG + Chr5:7046662-7046681 MsG0580024617.01.T01:intron 40.0%
CATCGTTGACGATATCAAGA+AGG + Chr5:7043286-7043305 MsG0580024617.01.T01:CDS 40.0%
CATTGTTACAGTCTAGTGGT+TGG - Chr5:7044840-7044859 None:intergenic 40.0%
CCCAAATGGCAAGATATTCT+CGG + Chr5:7043230-7043249 MsG0580024617.01.T01:CDS 40.0%
CCCATTGTCATCAAACAGTA+TGG + Chr5:7044363-7044382 MsG0580024617.01.T01:CDS 40.0%
CCTATTGCTGAATCATCACT+GGG + Chr5:7047157-7047176 MsG0580024617.01.T01:intron 40.0%
CTATTGCTGAATCATCACTG+GGG + Chr5:7047158-7047177 MsG0580024617.01.T01:intron 40.0%
CTTGAAGTGAACCATTGTGA+TGG + Chr5:7045531-7045550 MsG0580024617.01.T01:intron 40.0%
GAAGAGAGATCAATTGCTTC+AGG + Chr5:7043498-7043517 MsG0580024617.01.T01:intron 40.0%
GCAGTAAGCTTTACGAGTAT+CGG - Chr5:7043693-7043712 None:intergenic 40.0%
GGTCATTCACATTTCGATGA+AGG + Chr5:7044413-7044432 MsG0580024617.01.T01:CDS 40.0%
GGTGAATTGGCATATGGAAT+TGG - Chr5:7045157-7045176 None:intergenic 40.0%
GGTTTAAAAGTTCGGCAATG+AGG - Chr5:7044942-7044961 None:intergenic 40.0%
GTTATTCCGGCTGAAATGTT+TGG - Chr5:7046671-7046690 None:intergenic 40.0%
TATTCTCGGTCAGTATTCCA+TGG + Chr5:7043244-7043263 MsG0580024617.01.T01:CDS 40.0%
TATTGCTGAATCATCACTGG+GGG + Chr5:7047159-7047178 MsG0580024617.01.T01:intron 40.0%
TCAAAATCGCAAAACCGGAT+AGG - Chr5:7044569-7044588 None:intergenic 40.0%
TCAATTTGAGTGGCAATTGG+AGG - Chr5:7043534-7043553 None:intergenic 40.0%
TCCTATTGCTGAATCATCAC+TGG + Chr5:7047156-7047175 MsG0580024617.01.T01:intron 40.0%
TGATCACTCAACATATGGGA+AGG - Chr5:7047089-7047108 None:intergenic 40.0%
TGCTTCACTTCCTATGCATT+TGG + Chr5:7044174-7044193 MsG0580024617.01.T01:CDS 40.0%
TGTAGTAGACCTAGGTGAAT+TGG - Chr5:7045170-7045189 None:intergenic 40.0%
TTACTATTGCTAGACCCATC+AGG - Chr5:7044238-7044257 None:intergenic 40.0%
TTAGAATAGAAGGCAAGTCG+AGG + Chr5:7046761-7046780 MsG0580024617.01.T01:intron 40.0%
TTCCATATGCCAATTCACCT+AGG + Chr5:7045158-7045177 MsG0580024617.01.T01:CDS 40.0%
TTCTTGCTCAGCAACAATAC+AGG + Chr5:7045320-7045339 MsG0580024617.01.T01:CDS 40.0%
TTGTCATCAAACAGTATGGG+CGG + Chr5:7044367-7044386 MsG0580024617.01.T01:CDS 40.0%
! ACATCGGGATCACAACTTTT+GGG + Chr5:7045067-7045086 MsG0580024617.01.T01:CDS 40.0%
! ACTCGTCTAAACCAGTTTTC+TGG + Chr5:7046377-7046396 MsG0580024617.01.T01:CDS 40.0%
! AGTGCACAATCTTTTCCTGA+TGG + Chr5:7044220-7044239 MsG0580024617.01.T01:CDS 40.0%
! ATGCAGTTTTCTCCACAACT+TGG + Chr5:7046266-7046285 MsG0580024617.01.T01:CDS 40.0%
! CATTCTTCATTCCCTTTTGC+AGG + Chr5:7043616-7043635 MsG0580024617.01.T01:intron 40.0%
! CCCATACTGTTTGATGACAA+TGG - Chr5:7044367-7044386 None:intergenic 40.0%
! CCGAGAATATCTTGCCATTT+GGG - Chr5:7043233-7043252 None:intergenic 40.0%
! CTCTATTTCTTGGTTAACCG+AGG - Chr5:7045939-7045958 None:intergenic 40.0%
! GTGCACAATCTTTTCCTGAT+GGG + Chr5:7044221-7044240 MsG0580024617.01.T01:CDS 40.0%
! TGCAGTTTTCTCCACAACTT+GGG + Chr5:7046267-7046286 MsG0580024617.01.T01:CDS 40.0%
!! AGTTTTGTGGAGAGCATAAC+AGG - Chr5:7043448-7043467 None:intergenic 40.0%
!! CATTTCAGGGAGTAGTTTTG+TGG - Chr5:7043461-7043480 None:intergenic 40.0%
!! CTCGAAGATTTTGATGCCTA+TGG + Chr5:7043191-7043210 MsG0580024617.01.T01:CDS 40.0%
!! TACAAGAAGGTGCTATTGGT+TGG + Chr5:7044009-7044028 MsG0580024617.01.T01:intron 40.0%
!! TATCCTTCTGAAACAACGCA+CGG - Chr5:7046043-7046062 None:intergenic 40.0%
!! TCCTTGATATGGCTTTGAAC+AGG - Chr5:7043169-7043188 None:intergenic 40.0%
!! TGAGTACAAGAAGGTGCTAT+TGG + Chr5:7044005-7044024 MsG0580024617.01.T01:intron 40.0%
!!! TACTTTTTCAGCACCTTCAC+AGG - Chr5:7043666-7043685 None:intergenic 40.0%
AATGCGTCTGCCAAATGCAT+AGG - Chr5:7044187-7044206 None:intergenic 45.0%
AATTGCTGATGCCCAAGTTG+TGG - Chr5:7046281-7046300 None:intergenic 45.0%
ACTACTCCCTGAAATGGAGA+CGG + Chr5:7043465-7043484 MsG0580024617.01.T01:intron 45.0%
ACTTGGGCATCAGCAATTTC+AGG + Chr5:7046283-7046302 MsG0580024617.01.T01:CDS 45.0%
AGAGGAAGGTCGATGTGAAA+TGG - Chr5:7043581-7043600 None:intergenic 45.0%
AGAGGCCACACATACACATA+GGG + Chr5:7044754-7044773 MsG0580024617.01.T01:intron 45.0%
ATAGAAGGCAAGTCGAGGTA+TGG + Chr5:7046766-7046785 MsG0580024617.01.T01:intron 45.0%
ATGAAGAGGGAAGACAGAAG+AGG - Chr5:7043599-7043618 None:intergenic 45.0%
ATTACCCTCGCCAACATTGA+CGG - Chr5:7043807-7043826 None:intergenic 45.0%
ATTGCAGTGTTCAACATGGG+AGG + Chr5:7047187-7047206 MsG0580024617.01.T01:intron 45.0%
ATTGTCAAAAGAAGTGGCGC+TGG - Chr5:7045122-7045141 None:intergenic 45.0%
CAACAACAACACGGTTCACA+AGG + Chr5:7047253-7047272 MsG0580024617.01.T01:CDS 45.0%
CAACGATGTTGAAGAGTTCG+AGG - Chr5:7043274-7043293 None:intergenic 45.0%
CAGCAACAGCAACAACAACA+CGG + Chr5:7047244-7047263 MsG0580024617.01.T01:CDS 45.0%
CCCAGTGATGATTCAGCAAT+AGG - Chr5:7047160-7047179 None:intergenic 45.0%
CGATATCAAGAAGGTCTCCA+AGG + Chr5:7043295-7043314 MsG0580024617.01.T01:CDS 45.0%
CGGACATATAAGTGCGCATA+AGG - Chr5:7046023-7046042 None:intergenic 45.0%
CTAAATAACGCGCTGTTAGC+AGG - Chr5:7046404-7046423 None:intergenic 45.0%
CTTGGGCATCAGCAATTTCA+GGG + Chr5:7046284-7046303 MsG0580024617.01.T01:CDS 45.0%
GACATGCCTATCATACCATC+TGG - Chr5:7046451-7046470 None:intergenic 45.0%
GACCTAGGTGAATTGGCATA+TGG - Chr5:7045163-7045182 None:intergenic 45.0%
GCACTCTAACCATGTATCAG+AGG + Chr5:7045841-7045860 MsG0580024617.01.T01:intron 45.0%
GCATTTGGCAGACGCATTTA+CGG + Chr5:7044189-7044208 MsG0580024617.01.T01:CDS 45.0%
GCCTGTTCAAAGCCATATCA+AGG + Chr5:7043165-7043184 MsG0580024617.01.T01:CDS 45.0%
GCTTTCTACCTTTGCCTATC+CGG + Chr5:7044552-7044571 MsG0580024617.01.T01:intron 45.0%
GGCTGCCAAAATTCAAGAAC+AGG + Chr5:7043763-7043782 MsG0580024617.01.T01:CDS 45.0%
GGGATAGACTATGAAAGCCT+TGG - Chr5:7043315-7043334 None:intergenic 45.0%
GGTCAAAGCCAACTCAATCA+AGG + Chr5:7046344-7046363 MsG0580024617.01.T01:CDS 45.0%
GGTCGATGTGAAATGGAAAG+TGG - Chr5:7043574-7043593 None:intergenic 45.0%
GTATGGACATCATACCACCA+GGG - Chr5:7047219-7047238 None:intergenic 45.0%
GTGAAGCAGTTATATGCCTC+TGG - Chr5:7044162-7044181 None:intergenic 45.0%
GTTGTGAGGAGGTTTCATGT+GGG - Chr5:7044818-7044837 None:intergenic 45.0%
GTTGTGGAGAAAACTGCATC+TGG - Chr5:7046265-7046284 None:intergenic 45.0%
TATACTCTTGAAAGCCCGAC+TGG + Chr5:7045905-7045924 MsG0580024617.01.T01:intron 45.0%
TCCCCATTGTTACAGTCTAG+TGG - Chr5:7044844-7044863 None:intergenic 45.0%
TGAGAACTAACCTGCATTCG+TGG - Chr5:7046710-7046729 None:intergenic 45.0%
TGTATGGACATCATACCACC+AGG - Chr5:7047220-7047239 None:intergenic 45.0%
TGTTAGCAGGACCAGAAAAC+TGG - Chr5:7046391-7046410 None:intergenic 45.0%
TTCTTTCCTCCACAGTTGCA+CGG + Chr5:7046233-7046252 MsG0580024617.01.T01:intron 45.0%
! ACAAGAGTGACGATTGGTTG+TGG - Chr5:7043880-7043899 None:intergenic 45.0%
! GACATCGGGATCACAACTTT+TGG + Chr5:7045066-7045085 MsG0580024617.01.T01:intron 45.0%
! TGTTGTGCTGTTAGCTGTTG+CGG - Chr5:7045241-7045260 None:intergenic 45.0%
! TTGCCATTTGGGATTGGTGT+TGG - Chr5:7043222-7043241 None:intergenic 45.0%
!! GTTCTGAAGCGTCATCATAC+CGG - Chr5:7047320-7047339 None:intergenic 45.0%
!! TACTGCTTTGGAACTCGTCA+GGG + Chr5:7043707-7043726 MsG0580024617.01.T01:CDS 45.0%
!! TTACTGCTTTGGAACTCGTC+AGG + Chr5:7043706-7043725 MsG0580024617.01.T01:CDS 45.0%
AACAGGGTGGCAACTCTACT+AGG - Chr5:7046521-7046540 None:intergenic 50.0%
AGAAGTTGTTGCTGCTGCTG+TGG - Chr5:7045304-7045323 None:intergenic 50.0%
AGAGGGAAGACAGAAGAGGA+AGG - Chr5:7043595-7043614 None:intergenic 50.0%
AGGCAATCTGCGATGCAACA+AGG + Chr5:7045340-7045359 MsG0580024617.01.T01:CDS 50.0%
ATACACATAGGGAGGGGGAA+GGG + Chr5:7044765-7044784 MsG0580024617.01.T01:intron 50.0%
ATCTGCGATGCAACAAGGAC+TGG + Chr5:7045345-7045364 MsG0580024617.01.T01:CDS 50.0%
ATGATTGCTGCAGCCTGTGA+AGG + Chr5:7043650-7043669 MsG0580024617.01.T01:CDS 50.0%
CACACATACACATAGGGAGG+GGG + Chr5:7044760-7044779 MsG0580024617.01.T01:intron 50.0%
CACGGTTCACAAGGTGCATT+TGG + Chr5:7047262-7047281 MsG0580024617.01.T01:CDS 50.0%
CCACACATACACATAGGGAG+GGG + Chr5:7044759-7044778 MsG0580024617.01.T01:intron 50.0%
CGGCCAGAATTCGTTGTTAC+AGG + Chr5:7044387-7044406 MsG0580024617.01.T01:CDS 50.0%
CTACTTTAAGCGACGCTGCA+TGG + Chr5:7044693-7044712 MsG0580024617.01.T01:intron 50.0%
GAAAACCTGGGATCAAACCC+AGG + Chr5:7044790-7044809 MsG0580024617.01.T01:intron 50.0%
GAAGAGTTCGAGGTTGACCA+TGG - Chr5:7043264-7043283 None:intergenic 50.0%
GAGAGGCCACACATACACAT+AGG + Chr5:7044753-7044772 MsG0580024617.01.T01:intron 50.0%
GCACCAACACCAATCCCAAA+TGG + Chr5:7043216-7043235 MsG0580024617.01.T01:CDS 50.0%
GCCACACATACACATAGGGA+GGG + Chr5:7044758-7044777 MsG0580024617.01.T01:intron 50.0%
GGTTCACAAGGTGCATTTGG+TGG + Chr5:7047265-7047284 MsG0580024617.01.T01:CDS 50.0%
GGTTGTGAGGAGGTTTCATG+TGG - Chr5:7044819-7044838 None:intergenic 50.0%
GTTATATGCCTCTGGTCTCC+AGG - Chr5:7044154-7044173 None:intergenic 50.0%
TATGCAGGATTGCGGATACC+TGG + Chr5:7044133-7044152 MsG0580024617.01.T01:intron 50.0%
TCAGGGCAGACAGCTTTCTT+CGG + Chr5:7046301-7046320 MsG0580024617.01.T01:CDS 50.0%
TCGCAAAACCGGATAGGCAA+AGG - Chr5:7044563-7044582 None:intergenic 50.0%
TCTGCGATGCAACAAGGACT+GGG + Chr5:7045346-7045365 MsG0580024617.01.T01:CDS 50.0%
TCTTTCCTCCACAGTTGCAC+GGG + Chr5:7046234-7046253 MsG0580024617.01.T01:intron 50.0%
TGTCCTCCGTCTCCATTTCA+GGG - Chr5:7043474-7043493 None:intergenic 50.0%
TTATAGTACAAGGCGGCAGC+AGG - Chr5:7043837-7043856 None:intergenic 50.0%
TTCAATCTCTCCTGCTGCTG+TGG - Chr5:7043092-7043111 None:intergenic 50.0%
! ACAAGGTGCATTTGGTGGCA+TGG + Chr5:7047270-7047289 MsG0580024617.01.T01:CDS 50.0%
! CAATGAGGGAAGTGCACGAA+AGG - Chr5:7044927-7044946 None:intergenic 50.0%
! CAGTCTAGTGGTTGGTTGTG+AGG - Chr5:7044832-7044851 None:intergenic 50.0%
! GTTGTGGGTTTTGCTGCTGA+GGG - Chr5:7045213-7045232 None:intergenic 50.0%
! TCTAGTGGTTGGTTGTGAGG+AGG - Chr5:7044829-7044848 None:intergenic 50.0%
! TGTCCGTGCGTTGTTTCAGA+AGG + Chr5:7046037-7046056 MsG0580024617.01.T01:intron 50.0%
! TTGCTGTTGCTGCTGCTGTA+TGG - Chr5:7047236-7047255 None:intergenic 50.0%
! TTGTGGGTTTTGCTGCTGAG+GGG - Chr5:7045212-7045231 None:intergenic 50.0%
!! ATTGGTGTTGGTGCGACCAT+AGG - Chr5:7043210-7043229 None:intergenic 50.0%
ACTCCCTGAAATGGAGACGG+AGG + Chr5:7043468-7043487 MsG0580024617.01.T01:intron 55.0%
AGTTGTTGCTGCTGCTGTGG+AGG - Chr5:7045301-7045320 None:intergenic 55.0%
ATTGCCCCCACTCTCGACAA+GGG + Chr5:7043737-7043756 MsG0580024617.01.T01:CDS 55.0%
CATACACATAGGGAGGGGGA+AGG + Chr5:7044764-7044783 MsG0580024617.01.T01:intron 55.0%
CCCCTCCCTATGTGTATGTG+TGG - Chr5:7044762-7044781 None:intergenic 55.0%
CTGCGATGCAACAAGGACTG+GGG + Chr5:7045347-7045366 MsG0580024617.01.T01:CDS 55.0%
CTTGGTTAACCGAGGCCAAC+CGG - Chr5:7045931-7045950 None:intergenic 55.0%
GAGGTTTCATGTGGGTGCCT+GGG - Chr5:7044810-7044829 None:intergenic 55.0%
GCAGCAGGAGAGATTGAACC+AGG + Chr5:7043094-7043113 MsG0580024617.01.T01:CDS 55.0%
GCAGTGTTCAACATGGGAGG+TGG + Chr5:7047190-7047209 MsG0580024617.01.T01:intron 55.0%
GCGCATATGCAGCATGGCAT+TGG + Chr5:7046323-7046342 MsG0580024617.01.T01:CDS 55.0%
GGCCACACATACACATAGGG+AGG + Chr5:7044757-7044776 MsG0580024617.01.T01:intron 55.0%
GTCTCTTCTGCCACGAATGC+AGG + Chr5:7046697-7046716 MsG0580024617.01.T01:intron 55.0%
GTGTCCTCCGTCTCCATTTC+AGG - Chr5:7043475-7043494 None:intergenic 55.0%
TCTTCGGCGCATATGCAGCA+TGG + Chr5:7046317-7046336 MsG0580024617.01.T01:CDS 55.0%
TGGGAAGGATGACTTCGCTG+AGG - Chr5:7047074-7047093 None:intergenic 55.0%
! GGTTGTGGGTTTTGCTGCTG+AGG - Chr5:7045214-7045233 None:intergenic 55.0%
AACATGGGAGGTGGCAACCC+TGG + Chr5:7047199-7047218 MsG0580024617.01.T01:CDS 60.0%
AGCCTGACCCTTGTCGAGAG+TGG - Chr5:7043747-7043766 None:intergenic 60.0%
AGCTGCCGTCAATGTTGGCG+AGG + Chr5:7043799-7043818 MsG0580024617.01.T01:CDS 60.0%
AGGGGGAAGGGTGGAAAACC+TGG + Chr5:7044777-7044796 MsG0580024617.01.T01:intron 60.0%
CATTGCCCCCACTCTCGACA+AGG + Chr5:7043736-7043755 MsG0580024617.01.T01:CDS 60.0%
CCTGACCCTTGTCGAGAGTG+GGG - Chr5:7043745-7043764 None:intergenic 60.0%
CGCCAACATTGACGGCAGCT+CGG - Chr5:7043799-7043818 None:intergenic 60.0%
CTCCGAGCTGCCGTCAATGT+TGG + Chr5:7043794-7043813 MsG0580024617.01.T01:CDS 60.0%
CTCTTGAAAGCCCGACTGGC+CGG + Chr5:7045909-7045928 MsG0580024617.01.T01:intron 60.0%
CTGACCCTTGTCGAGAGTGG+GGG - Chr5:7043744-7043763 None:intergenic 60.0%
CTTGTCGAGAGTGGGGGCAA+TGG - Chr5:7043738-7043757 None:intergenic 60.0%
GATGCAACAAGGACTGGGGC+AGG + Chr5:7045351-7045370 MsG0580024617.01.T01:CDS 60.0%
GCCTGACCCTTGTCGAGAGT+GGG - Chr5:7043746-7043765 None:intergenic 60.0%
GCTGCCGTCAATGTTGGCGA+GGG + Chr5:7043800-7043819 MsG0580024617.01.T01:CDS 60.0%
GCTGTTAGCTGTTGCGGCTG+CGG - Chr5:7045235-7045254 None:intergenic 60.0%
GGAGGTTTCATGTGGGTGCC+TGG - Chr5:7044811-7044830 None:intergenic 60.0%
GGGGGAAGGGTGGAAAACCT+GGG + Chr5:7044778-7044797 MsG0580024617.01.T01:intron 60.0%
TGCGGATACCTGGAGACCAG+AGG + Chr5:7044143-7044162 MsG0580024617.01.T01:CDS 60.0%
TGTTGCCCGTGCAACTGTGG+AGG - Chr5:7046242-7046261 None:intergenic 60.0%
TTAGCTGCTGCTGCACAGCC+TGG - Chr5:7043115-7043134 None:intergenic 60.0%
! GGGTTTTGCTGCTGAGGGGA+TGG - Chr5:7045208-7045227 None:intergenic 60.0%
!! TGGTGTTGCCCGTGCAACTG+TGG - Chr5:7046245-7046264 None:intergenic 60.0%
ACAACCGCAGCCACAGCAGC+AGG + Chr5:7043079-7043098 MsG0580024617.01.T01:CDS 65.0%
AGCTGTTGCGGCTGCGGTTG+TGG - Chr5:7045229-7045248 None:intergenic 65.0%
ATGGGAGGTGGCAACCCTGG+TGG + Chr5:7047202-7047221 MsG0580024617.01.T01:CDS 65.0%
CACATAGGGAGGGGGAAGGG+TGG + Chr5:7044768-7044787 MsG0580024617.01.T01:intron 65.0%
CCCCACTCTCGACAAGGGTC+AGG + Chr5:7043742-7043761 MsG0580024617.01.T01:CDS 65.0%
CTCTCCTGCTGCTGTGGCTG+CGG - Chr5:7043086-7043105 None:intergenic 65.0%
GCTGTTGCGGCTGCGGTTGT+GGG - Chr5:7045228-7045247 None:intergenic 65.0%
GGGTGCCTGGGTTTGATCCC+AGG - Chr5:7044798-7044817 None:intergenic 65.0%
TCGAGAGTGGGGGCAATGGC+AGG - Chr5:7043734-7043753 None:intergenic 65.0%
TGCTGCTGTGGCTGCGGTTG+TGG - Chr5:7043080-7043099 None:intergenic 65.0%
! TGAAAGCCCGACTGGCCGGT+TGG + Chr5:7045913-7045932 MsG0580024617.01.T01:intron 65.0%
!! GTGGCGCTGGTTGCAGCAGA+AGG - Chr5:7045109-7045128 None:intergenic 65.0%
ACCGAGGCCAACCGGCCAGT+CGG - Chr5:7045923-7045942 None:intergenic 70.0%
CCGAGGCCAACCGGCCAGTC+GGG - Chr5:7045922-7045941 None:intergenic 75.0%
!! CCCGACTGGCCGGTTGGCCT+CGG + Chr5:7045919-7045938 MsG0580024617.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr5 gene 7043053 7047393 7043053 ID=MsG0580024617.01;Name=MsG0580024617.01
Chr5 mRNA 7043053 7047393 7043053 ID=MsG0580024617.01.T01;Parent=MsG0580024617.01;Name=MsG0580024617.01.T01;_AED=0.50;_eAED=0.54;_QI=0|0|0|1|1|0.88|9|0|501
Chr5 exon 7043053 7043362 7043053 ID=MsG0580024617.01.T01:exon:29317;Parent=MsG0580024617.01.T01
Chr5 exon 7043520 7043563 7043520 ID=MsG0580024617.01.T01:exon:29318;Parent=MsG0580024617.01.T01
Chr5 exon 7043638 7043821 7043638 ID=MsG0580024617.01.T01:exon:29319;Parent=MsG0580024617.01.T01
Chr5 exon 7044140 7044242 7044140 ID=MsG0580024617.01.T01:exon:29320;Parent=MsG0580024617.01.T01
Chr5 exon 7044344 7044434 7044344 ID=MsG0580024617.01.T01:exon:29321;Parent=MsG0580024617.01.T01
Chr5 exon 7045067 7045372 7045067 ID=MsG0580024617.01.T01:exon:29322;Parent=MsG0580024617.01.T01
Chr5 exon 7046248 7046454 7046248 ID=MsG0580024617.01.T01:exon:29323;Parent=MsG0580024617.01.T01
Chr5 exon 7047050 7047110 7047050 ID=MsG0580024617.01.T01:exon:29324;Parent=MsG0580024617.01.T01
Chr5 exon 7047194 7047393 7047194 ID=MsG0580024617.01.T01:exon:29325;Parent=MsG0580024617.01.T01
Chr5 CDS 7043053 7043362 7043053 ID=MsG0580024617.01.T01:cds;Parent=MsG0580024617.01.T01
Chr5 CDS 7043520 7043563 7043520 ID=MsG0580024617.01.T01:cds;Parent=MsG0580024617.01.T01
Chr5 CDS 7043638 7043821 7043638 ID=MsG0580024617.01.T01:cds;Parent=MsG0580024617.01.T01
Chr5 CDS 7044140 7044242 7044140 ID=MsG0580024617.01.T01:cds;Parent=MsG0580024617.01.T01
Chr5 CDS 7044344 7044434 7044344 ID=MsG0580024617.01.T01:cds;Parent=MsG0580024617.01.T01
Chr5 CDS 7045067 7045372 7045067 ID=MsG0580024617.01.T01:cds;Parent=MsG0580024617.01.T01
Chr5 CDS 7046248 7046454 7046248 ID=MsG0580024617.01.T01:cds;Parent=MsG0580024617.01.T01
Chr5 CDS 7047050 7047110 7047050 ID=MsG0580024617.01.T01:cds;Parent=MsG0580024617.01.T01
Chr5 CDS 7047194 7047393 7047194 ID=MsG0580024617.01.T01:cds;Parent=MsG0580024617.01.T01
Gene Sequence

>MsG0580024617.01.T01

ATGGAGGGTGAGTTGGTGCAGCAGCCACAACCGCAGCCACAGCAGCAGGAGAGATTGAACCAGGCTGTGCAGCAGCAGCTAAACCTAGAACAAGTAAAGACACGTGCTATCAGCCTGTTCAAAGCCATATCAAGGATTCTCGAAGATTTTGATGCCTATGGTCGCACCAACACCAATCCCAAATGGCAAGATATTCTCGGTCAGTATTCCATGGTCAACCTCGAACTCTTCAACATCGTTGACGATATCAAGAAGGTCTCCAAGGCTTTCATAGTCTATCCCAAGAATGTCAATGCCGAAAATGCTACAAGGGATGCAGAACCTCCAATTGCCACTCAAATTGACAAGTTGAAGGCTAGAATTGATATGATTGCTGCAGCCTGTGAAGGTGCTGAAAAAGTATTGGCCGATACTCGTAAAGCTTACTGCTTTGGAACTCGTCAGGGTCCTGCCATTGCCCCCACTCTCGACAAGGGTCAGGCTGCCAAAATTCAAGAACAGGAAAATCTACTCCGAGCTGCCGTCAATGTTGGCGAGGGATTGCGGATACCTGGAGACCAGAGGCATATAACTGCTTCACTTCCTATGCATTTGGCAGACGCATTTACGGTCAACGAGAGTGCACAATCTTTTCCTGATGGATGTGTATATGAAGAATACCCCATTGTCATCAAACAGTATGGGCGGCCAGAATTCGTTGTTACAGGTCTGGTCATTCACATTTCGATGAAGACATCGGGATCACAACTTTTGGGAAGATCAGCTGCATCTCCTTCTGCTGCAACCAGCGCCACTTCTTTTGACAATACAACAGCTTCACCAATTCCATATGCCAATTCACCTAGGTCTACTACAAATATGATGAATACGCCATCCCCTCAGCAGCAAAACCCACAACCGCAGCCGCAACAGCTAACAGCACAACAACAGCAACAACAACGGCAGAAACTGATGCAGCAGTTACCTCCACAGCAGCAGCAACAACTTCTTGCTCAGCAACAATACAGGCAATCTGCGATGCAACAAGGACTGGGGCAGTTGCACGGGCAACACCAGATGCAGTTTTCTCCACAACTTGGGCATCAGCAATTTCAGGGCAGACAGCTTTCTTCGGCGCATATGCAGCATGGCATTGGTCAAAGCCAACTCAATCAAGGAAATCAGATGACTCGTCTAAACCAGTTTTCTGGTCCTGCTAACAGCGCGTTATTTAGTGCTGCTCAAACAACACCAAATACCCAGATGTTCGGATTATCTGGCAACAATCCTCAGCGAAGTCATCCTTCCCATATGTTGAGTGATCAAATGTTCAACATGGGAGGTGGCAACCCTGGTGGTATGATGTCCATACAGCAGCAGCAACAGCAACAACAACACGGTTCACAAGGTGCATTTGGTGGCATGGCATCTAATGCTCAGAATCTACAATCCGGTATGATGACGCTTCAGAACGCGCAACAGAATCATCCCAATTTCACTCAACAGAGACAACAAAATCAACAGTGA
Protein sequence

>MsG0580024617.01.T01

MEGELVQQPQPQPQQQERLNQAVQQQLNLEQVKTRAISLFKAISRILEDFDAYGRTNTNPKWQDILGQYSMVNLELFNIVDDIKKVSKAFIVYPKNVNAENATRDAEPPIATQIDKLKARIDMIAAACEGAEKVLADTRKAYCFGTRQGPAIAPTLDKGQAAKIQEQENLLRAAVNVGEGLRIPGDQRHITASLPMHLADAFTVNESAQSFPDGCVYEEYPIVIKQYGRPEFVVTGLVIHISMKTSGSQLLGRSAASPSAATSATSFDNTTASPIPYANSPRSTTNMMNTPSPQQQNPQPQPQQLTAQQQQQQRQKLMQQLPPQQQQQLLAQQQYRQSAMQQGLGQLHGQHQMQFSPQLGHQQFQGRQLSSAHMQHGIGQSQLNQGNQMTRLNQFSGPANSALFSAAQTTPNTQMFGLSGNNPQRSHPSHMLSDQMFNMGGGNPGGMMSIQQQQQQQQHGSQGAFGGMASNAQNLQSGMMTLQNAQQNHPNFTQQRQQNQQ*