AlfalfaGEDB | MsG0580024696.01

M. sativa cultivar ZhongmuNo.1 / MsG0580024696.01

KEGG: -
GO: GO:0046983
PFAM: PF00010

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024696.01.T01	XP_003611502.2	87.622	307	18	2	18	306	1	305	0	516

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024696.01.T01	Q9T072	35.759	316	160	11	19	303	1	304	6.00E-45	158

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024696.01.T01	G7K134	87.622	307	18	2	18	306	1	305	0.0	516

TFs/TRs:

Gene ID	Type	Classification
MsG0580024696.01.T01	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0580024696.01	MsG0580025191.01	0.806214	9.170860e-50	4.949602e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024696.01.T01	MTR_5g014640	87.622	307	18	2	18	306	1	305	0.0	516
MsG0580024696.01.T01	MTR_4g097940	46.061	330	114	14	18	306	1	307	1.85e-71	224
MsG0580024696.01.T01	MTR_4g097920	43.030	330	124	14	18	306	1	307	1.91e-65	209
MsG0580024696.01.T01	MTR_4g097920	42.540	315	118	13	32	306	1	292	1.88e-60	195
MsG0580024696.01.T01	MTR_2g010450	33.537	328	174	9	19	304	5	330	2.74e-45	157
MsG0580024696.01.T01	MTR_5g014520	39.056	233	130	4	80	305	83	310	1.85e-42	149
MsG0580024696.01.T01	MTR_5g014600	44.382	178	84	4	144	306	139	316	2.52e-42	149
MsG0580024696.01.T01	MTR_4g092700	33.106	293	172	9	32	305	24	311	5.09e-41	145
MsG0580024696.01.T01	MTR_2g104550	37.885	227	119	5	92	304	73	291	1.11e-40	144
MsG0580024696.01.T01	MTR_0250s0040	44.304	158	87	1	150	306	85	242	2.61e-39	139
MsG0580024696.01.T01	MTR_4g009540	38.496	226	118	6	91	304	94	310	3.78e-39	140
MsG0580024696.01.T01	MTR_4g009110	37.991	229	121	6	91	305	109	330	6.63e-39	140
MsG0580024696.01.T01	MTR_4g009540	38.053	226	119	6	91	304	94	310	1.80e-38	139
MsG0580024696.01.T01	MTR_4g067010	42.945	163	87	2	146	306	140	298	2.22e-38	138
MsG0580024696.01.T01	MTR_0011s0260	44.586	157	86	1	151	306	181	337	1.67e-37	137
MsG0580024696.01.T01	MTR_0011s0210	44.937	158	84	2	151	306	181	337	1.85e-37	137
MsG0580024696.01.T01	MTR_2g104560	41.916	167	88	5	144	306	45	206	3.58e-37	132
MsG0580024696.01.T01	MTR_6g047570	42.073	164	94	1	144	306	150	313	1.13e-36	134
MsG0580024696.01.T01	MTR_0246s0020	39.545	220	114	7	96	304	143	354	1.27e-36	135
MsG0580024696.01.T01	MTR_0246s0020	38.739	222	117	7	96	306	143	356	4.54e-36	134
MsG0580024696.01.T01	MTR_5g014560	42.857	154	87	1	152	304	130	283	1.15e-35	130
MsG0580024696.01.T01	MTR_2g104490	36.199	221	119	5	104	304	69	287	4.66e-35	129
MsG0580024696.01.T01	MTR_7g080780	36.199	221	122	3	88	306	94	297	4.94e-35	129
MsG0580024696.01.T01	MTR_7g080780	36.199	221	122	3	88	306	107	310	6.58e-35	129
MsG0580024696.01.T01	MTR_4g066460	39.151	212	112	4	101	306	106	306	8.94e-35	129
MsG0580024696.01.T01	MTR_2g104490	35.426	223	122	5	104	306	69	289	1.39e-34	128
MsG0580024696.01.T01	MTR_8g009020	39.412	170	91	3	146	305	136	303	2.99e-34	127
MsG0580024696.01.T01	MTR_8g069740	40.120	167	93	3	144	305	103	267	7.87e-34	125
MsG0580024696.01.T01	MTR_4g066380	36.916	214	113	3	93	306	112	303	4.02e-32	122
MsG0580024696.01.T01	MTR_4g097950	40.230	174	90	2	142	304	59	229	1.59e-31	118
MsG0580024696.01.T01	MTR_0246s0050	31.818	242	130	5	81	306	76	298	4.20e-31	119
MsG0580024696.01.T01	MTR_4g098035	31.818	242	130	5	81	306	97	319	5.76e-31	119
MsG0580024696.01.T01	MTR_2g104650	42.771	166	88	3	144	304	85	248	2.84e-30	115
MsG0580024696.01.T01	MTR_2g104590	37.126	167	78	4	144	305	60	204	7.59e-29	110
MsG0580024696.01.T01	MTR_2g104500	33.486	218	125	6	91	305	52	252	7.17e-28	109
MsG0580024696.01.T01	MTR_8g009010	36.646	161	66	2	146	305	127	252	3.29e-27	108
MsG0580024696.01.T01	MTR_2g104530	37.805	164	89	3	146	304	98	253	1.44e-26	106
MsG0580024696.01.T01	MTR_6g047550	61.429	70	27	0	144	213	164	233	2.59e-21	91.7
MsG0580024696.01.T01	MTR_4g009420	39.231	130	62	1	176	305	65	177	1.34e-20	88.2
MsG0580024696.01.T01	MTR_8g067280	35.758	165	72	5	144	283	449	604	1.98e-20	92.0
MsG0580024696.01.T01	MTR_4g009420	38.462	130	63	1	176	305	65	177	5.46e-20	86.3
MsG0580024696.01.T01	MTR_7g451650	36.923	130	73	1	176	305	57	177	9.85e-20	85.5
MsG0580024696.01.T01	MTR_5g014550	36.585	123	75	2	183	303	54	175	1.42e-19	85.1
MsG0580024696.01.T01	MTR_7g451650	36.154	130	74	1	176	305	57	177	1.10e-18	82.8
MsG0580024696.01.T01	MTR_5g030430	33.155	187	107	4	119	287	453	639	1.74e-18	86.3
MsG0580024696.01.T01	MTR_1g072320	32.240	183	105	5	139	306	453	631	3.02e-18	85.5
MsG0580024696.01.T01	MTR_7g117670	37.705	122	51	3	154	265	403	509	9.83e-18	84.0
MsG0580024696.01.T01	MTR_4g009510	33.566	143	84	3	164	305	53	185	1.48e-17	80.1
MsG0580024696.01.T01	MTR_8g027495	40.179	112	54	3	154	262	459	560	9.31e-17	81.3
MsG0580024696.01.T01	MTR_7g050350	33.871	124	73	1	182	305	1	115	2.37e-16	74.7
MsG0580024696.01.T01	MTR_7g451650	33.871	124	73	1	182	305	1	115	2.37e-16	74.7
MsG0580024696.01.T01	MTR_7g083900	32.500	160	93	3	153	298	286	444	2.20e-15	76.6
MsG0580024696.01.T01	MTR_7g083900	32.500	160	93	3	153	298	286	444	2.25e-15	76.6
MsG0580024696.01.T01	MTR_8g024770	36.029	136	71	4	154	277	280	411	2.65e-15	76.3
MsG0580024696.01.T01	MTR_8g024790	30.128	156	107	1	154	307	292	447	3.52e-15	76.3
MsG0580024696.01.T01	MTR_3g030700	31.707	164	94	5	155	306	198	355	1.56e-13	70.9
MsG0580024696.01.T01	MTR_8g064700	25.490	153	108	2	155	301	246	398	2.13e-13	70.5
MsG0580024696.01.T01	MTR_7g096350	34.146	123	54	3	144	262	342	441	2.67e-13	70.5
MsG0580024696.01.T01	MTR_3g498695	28.571	168	105	4	144	298	289	454	6.88e-13	69.3
MsG0580024696.01.T01	MTR_3g498695	28.571	168	105	4	144	298	289	454	7.28e-13	69.3
MsG0580024696.01.T01	MTR_4g057270	31.206	141	82	4	155	286	151	285	1.52e-12	67.8
MsG0580024696.01.T01	MTR_8g098275	27.647	170	87	4	150	286	305	471	3.22e-12	67.4
MsG0580024696.01.T01	MTR_8g098275	28.313	166	83	4	154	286	402	564	3.26e-12	67.4
MsG0580024696.01.T01	MTR_8g098275	28.313	166	83	4	154	286	245	407	3.53e-12	67.0
MsG0580024696.01.T01	MTR_1g112680	31.746	126	75	3	103	217	256	381	3.69e-12	67.0
MsG0580024696.01.T01	MTR_2g084280	30.714	140	84	4	155	288	135	267	1.49e-11	64.7
MsG0580024696.01.T01	MTR_3g104100	28.395	162	91	5	155	298	197	351	8.81e-11	62.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024696.01.T01	AT4G37850	35.759	316	160	11	19	303	1	304	6.11e-46	158
MsG0580024696.01.T01	AT4G37850	35.759	316	160	11	19	303	1	304	6.11e-46	158
MsG0580024696.01.T01	AT2G22760	41.204	216	108	4	98	306	73	276	1.09e-44	154
MsG0580024696.01.T01	AT2G22760	41.589	214	106	4	98	304	73	274	1.43e-44	153
MsG0580024696.01.T01	AT2G22750	34.234	333	147	14	19	305	5	311	5.68e-41	145
MsG0580024696.01.T01	AT2G22750	34.234	333	147	14	19	305	1	307	6.48e-41	145
MsG0580024696.01.T01	AT2G22750	34.234	333	147	14	19	305	5	311	8.84e-41	145
MsG0580024696.01.T01	AT2G22750	45.763	177	69	4	145	305	118	283	4.93e-39	139
MsG0580024696.01.T01	AT2G22750	45.763	177	69	4	145	305	118	283	6.01e-39	139
MsG0580024696.01.T01	AT2G22770	42.941	170	81	2	152	305	131	300	1.22e-34	128
MsG0580024696.01.T01	AT5G46760	30.342	234	113	8	82	288	345	555	1.43e-19	89.4
MsG0580024696.01.T01	AT4G17880	35.185	162	76	5	144	288	403	552	7.64e-19	87.4
MsG0580024696.01.T01	AT1G32640	35.099	151	92	3	144	288	439	589	4.56e-17	82.0
MsG0580024696.01.T01	AT1G01260	35.099	151	64	4	149	289	429	555	2.67e-16	79.7
MsG0580024696.01.T01	AT1G01260	35.099	151	64	4	149	289	429	555	2.67e-16	79.7
MsG0580024696.01.T01	AT1G01260	35.099	151	64	4	149	289	429	555	2.67e-16	79.7
MsG0580024696.01.T01	AT2G46510	31.250	144	78	3	144	283	382	508	3.25e-16	79.3
MsG0580024696.01.T01	AT4G09820	33.784	148	74	3	138	281	345	472	9.38e-15	75.1
MsG0580024696.01.T01	AT1G12860	31.373	153	98	3	153	298	267	419	1.18e-14	74.3
MsG0580024696.01.T01	AT1G12860	31.373	153	98	3	153	298	267	419	1.42e-14	74.3
MsG0580024696.01.T01	AT5G57150	27.711	166	100	3	151	301	52	212	2.11e-14	71.6
MsG0580024696.01.T01	AT5G57150	27.219	169	103	3	148	301	50	213	2.83e-14	72.0
MsG0580024696.01.T01	AT5G57150	27.711	166	100	3	151	301	53	213	2.96e-14	71.2
MsG0580024696.01.T01	AT5G57150	27.711	166	100	3	151	301	53	213	3.49e-14	70.9
MsG0580024696.01.T01	AT5G57150	27.711	166	100	3	151	301	52	212	6.91e-14	70.5
MsG0580024696.01.T01	AT2G16910	28.070	171	97	5	154	298	315	485	9.52e-14	72.0
MsG0580024696.01.T01	AT4G29930	30.345	145	88	3	154	295	55	189	2.07e-13	68.9
MsG0580024696.01.T01	AT4G29930	30.345	145	88	3	154	295	55	189	3.43e-13	68.2
MsG0580024696.01.T01	AT4G29930	30.822	146	89	3	154	295	55	192	3.54e-13	68.2
MsG0580024696.01.T01	AT1G63650	28.788	198	101	7	132	303	390	573	5.62e-13	69.7
MsG0580024696.01.T01	AT1G63650	28.788	198	101	7	132	303	390	573	5.62e-13	69.7
MsG0580024696.01.T01	AT1G63650	28.788	198	101	7	132	303	390	573	5.62e-13	69.7
MsG0580024696.01.T01	AT4G16430	45.333	75	37	1	144	214	307	381	3.04e-12	67.4
MsG0580024696.01.T01	AT4G00870	29.927	137	92	1	154	286	250	386	6.03e-12	66.2
MsG0580024696.01.T01	AT3G61950	30.597	134	88	3	154	283	129	261	8.33e-12	65.1
MsG0580024696.01.T01	AT3G26744	30.573	157	98	3	153	298	307	463	8.67e-12	65.9
MsG0580024696.01.T01	AT3G26744	30.573	157	98	3	153	298	307	463	9.93e-12	65.9
MsG0580024696.01.T01	AT3G26744	30.573	157	98	3	153	298	307	463	9.93e-12	65.9
MsG0580024696.01.T01	AT3G26744	30.573	157	98	3	153	298	307	463	9.93e-12	65.9
MsG0580024696.01.T01	AT3G61950	30.597	134	88	3	154	283	180	312	1.06e-11	65.1
MsG0580024696.01.T01	AT4G29930	26.829	164	98	3	154	295	55	218	1.66e-11	63.9
MsG0580024696.01.T01	AT4G29930	26.829	164	98	3	154	295	55	218	1.66e-11	63.9
MsG0580024696.01.T01	AT4G29930	26.829	164	98	3	154	295	55	218	2.35e-11	63.5
MsG0580024696.01.T01	AT5G41315	29.213	178	93	7	154	303	450	622	7.81e-11	63.2
MsG0580024696.01.T01	AT5G41315	29.213	178	93	7	154	303	442	614	7.98e-11	63.2
MsG0580024696.01.T01	AT5G41315	29.213	178	93	7	154	303	447	619	8.53e-11	63.2
MsG0580024696.01.T01	AT5G65640	31.293	147	89	4	149	291	174	312	9.99e-11	62.4

Find 59 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTTCTCATCTTACACCAATT+TGG	0.189336	5:+8346253	None:intergenic
GATACTCTTACTTCGATTTC+AGG	0.236620	5:-8348102	None:intergenic
GTTTCAACTGGGAAACAATT+TGG	0.250112	5:-8346894	None:intergenic
TACTTTGGACAGTGAGATTA+AGG	0.260165	5:-8348203	None:intergenic
TTCAGGAAGTGGTTGGTTAT+TGG	0.276191	5:-8348085	None:intergenic
GCTCTTTCAGCCATTGTTCC+TGG	0.288584	5:+8347262	MsG0580024696.01.T01:CDS
CCAAAGTTGTCGAATAATAT+TGG	0.304765	5:-8346843	None:intergenic
TCGAGCTTGAGCAGTGTTCC+TGG	0.329696	5:-8347185	None:intergenic
AGAGAGTTAATATTCCAAAT+TGG	0.339623	5:-8346267	None:intergenic
CGATTTGATTAGATGTGGTA+TGG	0.375743	5:-8346487	None:intergenic
CATTGTTCCTGGCCTCAAAA+AGG	0.384959	5:+8347273	MsG0580024696.01.T01:CDS
TCATCAAGATGAGTTTCAAC+TGG	0.389714	5:-8346906	None:intergenic
AATGAGTTGAGGTGATGAAT+AGG	0.399012	5:-8346976	None:intergenic
TAAAATTGCTTAGAAGCAAT+TGG	0.399867	5:-8347023	None:intergenic
GTTGTTTCCAAAGGGCAAAA+AGG	0.400410	5:-8348229	None:intergenic
CCAATATTATTCGACAACTT+TGG	0.407380	5:+8346843	MsG0580024696.01.T01:CDS
AGTAGTATGCTTACAAGTTC+AGG	0.414356	5:-8346563	None:intergenic
AGAAGCAATTGGTGTTGAAC+TGG	0.425456	5:-8347012	None:intergenic
TGAGGTGATGAATAGGAAGA+AGG	0.434612	5:-8346969	None:intergenic
TCTTCCAGCTTTGTTTCTCA+AGG	0.435258	5:+8347109	MsG0580024696.01.T01:CDS
ATGGACAAAGCTTCTGTGTT+GGG	0.439391	5:+8347913	MsG0580024696.01.T01:CDS
AAATAAATTAGAAGAGAAAG+TGG	0.442399	5:-8346297	None:intergenic
CAAGAGAATCCATCGGGTAT+TGG	0.448559	5:-8346815	None:intergenic
TGAAAGAGCGATGAAACTTC+GGG	0.456547	5:-8347248	None:intergenic
GAGGTGATGAATAGGAAGAA+GGG	0.466954	5:-8346968	None:intergenic
GGACGTGCCGCTACGGTGCT+TGG	0.467945	5:+8348168	MsG0580024696.01.T01:CDS
ATCAACAATGTTGTTTCCAA+AGG	0.469768	5:-8348238	None:intergenic
TCAACAATGTTGTTTCCAAA+GGG	0.475298	5:-8348237	None:intergenic
CTGAAAGAGCGATGAAACTT+CGG	0.488970	5:-8347249	None:intergenic
CTTCGATTTCAGGAAGTGGT+TGG	0.508259	5:-8348092	None:intergenic
TAAAACCTAAAGTCGAGAAA+AGG	0.508413	5:+8347066	MsG0580024696.01.T01:CDS
CTTACTTCGATTTCAGGAAG+TGG	0.529255	5:-8348096	None:intergenic
TTTATTTACCTTAGCAACAA+TGG	0.529541	5:-8348265	None:intergenic
GATTTGATTAGATGTGGTAT+GGG	0.531705	5:-8346486	None:intergenic
TGATGTAACCATTGTTGCTA+AGG	0.545162	5:+8348257	MsG0580024696.01.T01:CDS
ACAAGTTCAGGCACATAGGT+GGG	0.548457	5:-8346551	None:intergenic
ACAAGCACGTTTGCAGACAC+TGG	0.553923	5:+8347963	MsG0580024696.01.T01:CDS
AACTTCGATTTGATTAGATG+TGG	0.560569	5:-8346492	None:intergenic
ACACAGTGGACGTGCCGCTA+CGG	0.562208	5:+8348161	MsG0580024696.01.T01:CDS
AGAACCTTGAGAAACAAAGC+TGG	0.571290	5:-8347113	None:intergenic
CAAGTTCAGGCACATAGGTG+GGG	0.574321	5:-8346550	None:intergenic
CTTCTTTAACCAATACCCGA+TGG	0.574424	5:+8346806	MsG0580024696.01.T01:CDS
AACTGGGAAACAATTTGGTG+TGG	0.582222	5:-8346889	None:intergenic
TCAAGCTCGAGAACATGTAA+TGG	0.585662	5:+8347198	MsG0580024696.01.T01:CDS
TACAAGTTCAGGCACATAGG+TGG	0.586428	5:-8346552	None:intergenic
GAGATGCAAGAGAATCCATC+GGG	0.590902	5:-8346821	None:intergenic
GCTTACAAGTTCAGGCACAT+AGG	0.592149	5:-8346555	None:intergenic
CTCATCTTGATGATCAAACA+AGG	0.597867	5:+8346916	MsG0580024696.01.T01:CDS
CATCAAGATGAGTTTCAACT+GGG	0.598938	5:-8346905	None:intergenic
GATGGACAAAGCTTCTGTGT+TGG	0.607222	5:+8347912	MsG0580024696.01.T01:intron
AGATCTCTTCACTTGAACTG+TGG	0.609751	5:-8348019	None:intergenic
GGAGATGCAAGAGAATCCAT+CGG	0.627162	5:-8346822	None:intergenic
TGTTCAAAAGAAATGAGTTG+AGG	0.643051	5:-8346987	None:intergenic
AAGTTCAGGCACATAGGTGG+GGG	0.650925	5:-8346549	None:intergenic
AATGGCCGAAAGAAAACGAA+GGG	0.657033	5:+8347216	MsG0580024696.01.T01:CDS
TAATTGGCCAAGCACCGTAG+CGG	0.678187	5:-8348175	None:intergenic
AGCACGTTTGCAGACACTGG+AGG	0.686426	5:+8347966	MsG0580024696.01.T01:CDS
TAATGGCCGAAAGAAAACGA+AGG	0.695210	5:+8347215	MsG0580024696.01.T01:CDS
ATTCAATGTGACAAACACAG+TGG	0.762327	5:+8348147	MsG0580024696.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TAAATTAATGTATTCAATTA+TGG	+	Chr5:8347881-8347900	MsG0580024696.01.T01:intron	10.0%
!!!	TCAATAATTTATTTTTCTTT+TGG	+	Chr5:8347470-8347489	MsG0580024696.01.T01:intron	10.0%
!!	AAAAGCAGATTAAATTAAAT+AGG	-	Chr5:8346342-8346361	None:intergenic	15.0%
!!	TACAATATAAATATTGCAAT+TGG	-	Chr5:8347846-8347865	None:intergenic	15.0%
!!!	AAGTTTATGAATTTTAAGAT+AGG	-	Chr5:8346596-8346615	None:intergenic	15.0%
!!!	ATGTTTTTATTTCATTTTCT+AGG	+	Chr5:8347669-8347688	MsG0580024696.01.T01:intron	15.0%
!!!	TTATTTTCTTATGATCAATT+AGG	-	Chr5:8347535-8347554	None:intergenic	15.0%
!!	AAATAAATTAGAAGAGAAAG+TGG	-	Chr5:8346300-8346319	None:intergenic	20.0%
!!	ACATTAATGATCCATATTAA+AGG	+	Chr5:8347380-8347399	MsG0580024696.01.T01:intron	20.0%
!!	AGTAGTATTTGATATAGAAA+TGG	-	Chr5:8347350-8347369	None:intergenic	20.0%
!!!	ATTTAATCTGCTTTTTCTTT+AGG	+	Chr5:8346347-8346366	MsG0580024696.01.T01:intron	20.0%
!!!	TCTTTAATTACTTTTGAACA+GGG	+	Chr5:8346768-8346787	MsG0580024696.01.T01:intron	20.0%
!!!	TTTAATCTGCTTTTTCTTTA+GGG	+	Chr5:8346348-8346367	MsG0580024696.01.T01:intron	20.0%
!!!	TTTATTTTCTTCAATCTTCA+AGG	+	Chr5:8346313-8346332	MsG0580024696.01.T01:five_prime_UTR	20.0%
!	AGAGAGTTAATATTCCAAAT+TGG	-	Chr5:8346270-8346289	None:intergenic	25.0%
!	AGTTGAAATCTTAGAATTGA+GGG	-	Chr5:8346424-8346443	None:intergenic	25.0%
!	ATTATAACATGTTTGTGAGT+TGG	-	Chr5:8347312-8347331	None:intergenic	25.0%
!	TAAAATTGCTTAGAAGCAAT+TGG	-	Chr5:8347026-8347045	None:intergenic	25.0%
!	TATTGACGAAAAACATGAAA+TGG	-	Chr5:8347456-8347475	None:intergenic	25.0%
!	TGATATAGAAATGGTTTGAA+TGG	-	Chr5:8347341-8347360	None:intergenic	25.0%
!	TTGGTAAGTTCAACTTAATT+AGG	-	Chr5:8347827-8347846	None:intergenic	25.0%
!	TTTATTTACCTTAGCAACAA+TGG	-	Chr5:8348268-8348287	None:intergenic	25.0%
!!	TCTAATCAAATCGAAGTTTT+AGG	+	Chr5:8346497-8346516	MsG0580024696.01.T01:CDS	25.0%
!!	TGAGATTAAGGTTTTCTAAT+TGG	-	Chr5:8348194-8348213	None:intergenic	25.0%
!!	TTAGTCTTCGAGAAAAAAAT+AGG	+	Chr5:8347563-8347582	MsG0580024696.01.T01:intron	25.0%
!!!	CTCTTTAATTACTTTTGAAC+AGG	+	Chr5:8346767-8346786	MsG0580024696.01.T01:intron	25.0%
	AAATGGTCACTAATATTGCT+AGG	-	Chr5:8347439-8347458	None:intergenic	30.0%
	AAGAGTAGACATCAAAAAGT+TGG	+	Chr5:8347609-8347628	MsG0580024696.01.T01:intron	30.0%
	AATGGTCACTAATATTGCTA+GGG	-	Chr5:8347438-8347457	None:intergenic	30.0%
	AGAGTAGACATCAAAAAGTT+GGG	+	Chr5:8347610-8347629	MsG0580024696.01.T01:intron	30.0%
	AGTAATGTTCTACTTACACT+AGG	+	Chr5:8347740-8347759	MsG0580024696.01.T01:intron	30.0%
	ATCCATATTAAAGGCTGAAA+TGG	+	Chr5:8347389-8347408	MsG0580024696.01.T01:intron	30.0%
	CAGTTGAAATCTTAGAATTG+AGG	-	Chr5:8346425-8346444	None:intergenic	30.0%
	CCAAAGTTGTCGAATAATAT+TGG	-	Chr5:8346846-8346865	None:intergenic	30.0%
	CCAATATTATTCGACAACTT+TGG	+	Chr5:8346843-8346862	MsG0580024696.01.T01:CDS	30.0%
	GATTTGATTAGATGTGGTAT+GGG	-	Chr5:8346489-8346508	None:intergenic	30.0%
	TAAAACCTAAAGTCGAGAAA+AGG	+	Chr5:8347066-8347085	MsG0580024696.01.T01:CDS	30.0%
	TGTTCAAAAGAAATGAGTTG+AGG	-	Chr5:8346990-8347009	None:intergenic	30.0%
!	AACTTCGATTTGATTAGATG+TGG	-	Chr5:8346495-8346514	None:intergenic	30.0%
!	GATAAGATCATACCTTTTTG+AGG	-	Chr5:8347288-8347307	None:intergenic	30.0%
!	GTTTTACATCGGAATAATCA+AGG	-	Chr5:8347052-8347071	None:intergenic	30.0%
!!	AATTACTTTTGAACAGGGAA+TGG	+	Chr5:8346773-8346792	MsG0580024696.01.T01:intron	30.0%
!!	ATCAACAATGTTGTTTCCAA+AGG	-	Chr5:8348241-8348260	None:intergenic	30.0%
!!	TCAACAATGTTGTTTCCAAA+GGG	-	Chr5:8348240-8348259	None:intergenic	30.0%
!!	TTATTTTTCTGGTCGAACTT+TGG	+	Chr5:8346700-8346719	MsG0580024696.01.T01:intron	30.0%
!!!	TATCGATGTTTTGATCTTCT+TGG	-	Chr5:8346946-8346965	None:intergenic	30.0%
!!!	TCATTTTCTAGGATCAAATC+AGG	+	Chr5:8347680-8347699	MsG0580024696.01.T01:intron	30.0%
!!!	TTGACCAAGCTTTATTTTTC+TGG	+	Chr5:8346689-8346708	MsG0580024696.01.T01:intron	30.0%
!!!	TTTTTTGTCTTCGAACATGT+TGG	+	Chr5:8346381-8346400	MsG0580024696.01.T01:intron	30.0%
	AGTAGTATGCTTACAAGTTC+AGG	-	Chr5:8346566-8346585	None:intergenic	35.0%
	ATTCAATGTGACAAACACAG+TGG	+	Chr5:8348147-8348166	MsG0580024696.01.T01:CDS	35.0%
	CACCATTTCAGCCTTTAATA+TGG	-	Chr5:8347394-8347413	None:intergenic	35.0%
	CATCAAGATGAGTTTCAACT+GGG	-	Chr5:8346908-8346927	None:intergenic	35.0%
	CGATTTGATTAGATGTGGTA+TGG	-	Chr5:8346490-8346509	None:intergenic	35.0%
	GAGTAGACATCAAAAAGTTG+GGG	+	Chr5:8347611-8347630	MsG0580024696.01.T01:intron	35.0%
	GATACTCTTACTTCGATTTC+AGG	-	Chr5:8348105-8348124	None:intergenic	35.0%
	GCTGAAGACAACAAAAAAAC+TGG	+	Chr5:8347994-8348013	MsG0580024696.01.T01:CDS	35.0%
	GTTTCAACTGGGAAACAATT+TGG	-	Chr5:8346897-8346916	None:intergenic	35.0%
	TACTTTGGACAGTGAGATTA+AGG	-	Chr5:8348206-8348225	None:intergenic	35.0%
	TCAATTATGGTATGTGCAGA+TGG	+	Chr5:8347894-8347913	MsG0580024696.01.T01:intron	35.0%
	TCATCAAGATGAGTTTCAAC+TGG	-	Chr5:8346909-8346928	None:intergenic	35.0%
	TCGACCAGAAAAATAAAGCT+TGG	-	Chr5:8346696-8346715	None:intergenic	35.0%
	TGATGTAACCATTGTTGCTA+AGG	+	Chr5:8348257-8348276	MsG0580024696.01.T01:CDS	35.0%
!	AATGAGTTGAGGTGATGAAT+AGG	-	Chr5:8346979-8346998	None:intergenic	35.0%
!	CTCATCTTGATGATCAAACA+AGG	+	Chr5:8346916-8346935	MsG0580024696.01.T01:CDS	35.0%
!	CTTTTCCCTTCGTTTTCTTT+CGG	-	Chr5:8347224-8347243	None:intergenic	35.0%
!	TTACACCTTTTCTCGACTTT+AGG	-	Chr5:8347074-8347093	None:intergenic	35.0%
!!	CTCGACTTTAGGTTTTACAT+CGG	-	Chr5:8347063-8347082	None:intergenic	35.0%
!!!	GATGTTTTGATCTTCTTGGT+TGG	-	Chr5:8346942-8346961	None:intergenic	35.0%
!!!	TCGAACATGTTGGTTTGTTT+TGG	+	Chr5:8346391-8346410	MsG0580024696.01.T01:intron	35.0%
	AATGGCCGAAAGAAAACGAA+GGG	+	Chr5:8347216-8347235	MsG0580024696.01.T01:CDS	40.0%
	AGAACCTTGAGAAACAAAGC+TGG	-	Chr5:8347116-8347135	None:intergenic	40.0%
	AGATCTCTTCACTTGAACTG+TGG	-	Chr5:8348022-8348041	None:intergenic	40.0%
	ATAACCAAGTGAATCAGACC+AGG	+	Chr5:8347167-8347186	MsG0580024696.01.T01:intron	40.0%
	ATGGACAAAGCTTCTGTGTT+GGG	+	Chr5:8347913-8347932	MsG0580024696.01.T01:CDS	40.0%
	CTGAAAGAGCGATGAAACTT+CGG	-	Chr5:8347252-8347271	None:intergenic	40.0%
	CTTACTTCGATTTCAGGAAG+TGG	-	Chr5:8348099-8348118	None:intergenic	40.0%
	CTTCTTTAACCAATACCCGA+TGG	+	Chr5:8346806-8346825	MsG0580024696.01.T01:CDS	40.0%
	GAGGTGATGAATAGGAAGAA+GGG	-	Chr5:8346971-8346990	None:intergenic	40.0%
	GTGTGATCTCTCTAATTCTC+TGG	+	Chr5:8347411-8347430	MsG0580024696.01.T01:intron	40.0%
	TAATGGCCGAAAGAAAACGA+AGG	+	Chr5:8347215-8347234	MsG0580024696.01.T01:CDS	40.0%
	TCAAGCTCGAGAACATGTAA+TGG	+	Chr5:8347198-8347217	MsG0580024696.01.T01:CDS	40.0%
	TGAAAGAGCGATGAAACTTC+GGG	-	Chr5:8347251-8347270	None:intergenic	40.0%
	TGAGGTGATGAATAGGAAGA+AGG	-	Chr5:8346972-8346991	None:intergenic	40.0%
!	AACTGGGAAACAATTTGGTG+TGG	-	Chr5:8346892-8346911	None:intergenic	40.0%
!	AGTAGTACCTTTTTGCCCTT+TGG	+	Chr5:8348222-8348241	MsG0580024696.01.T01:CDS	40.0%
!	GTTGTTTCCAAAGGGCAAAA+AGG	-	Chr5:8348232-8348251	None:intergenic	40.0%
!	TACTTTTGAACAGGGAATGG+AGG	+	Chr5:8346776-8346795	MsG0580024696.01.T01:intron	40.0%
!	TTCAGGAAGTGGTTGGTTAT+TGG	-	Chr5:8348088-8348107	None:intergenic	40.0%
!!	AGAAGCAATTGGTGTTGAAC+TGG	-	Chr5:8347015-8347034	None:intergenic	40.0%
!!	AGGGCAAAAAGGTACTACTT+TGG	-	Chr5:8348221-8348240	None:intergenic	40.0%
!!	TCTTCCAGCTTTGTTTCTCA+AGG	+	Chr5:8347109-8347128	MsG0580024696.01.T01:CDS	40.0%
	ACAAGTTCAGGCACATAGGT+GGG	-	Chr5:8346554-8346573	None:intergenic	45.0%
	CAAGAGAATCCATCGGGTAT+TGG	-	Chr5:8346818-8346837	None:intergenic	45.0%
	CATTGTTCCTGGCCTCAAAA+AGG	+	Chr5:8347273-8347292	MsG0580024696.01.T01:CDS	45.0%
	CTTCGATTTCAGGAAGTGGT+TGG	-	Chr5:8348095-8348114	None:intergenic	45.0%
	GAGATGCAAGAGAATCCATC+GGG	-	Chr5:8346824-8346843	None:intergenic	45.0%
	GATGGACAAAGCTTCTGTGT+TGG	+	Chr5:8347912-8347931	MsG0580024696.01.T01:intron	45.0%
	GCTTACAAGTTCAGGCACAT+AGG	-	Chr5:8346558-8346577	None:intergenic	45.0%
	GGAGATGCAAGAGAATCCAT+CGG	-	Chr5:8346825-8346844	None:intergenic	45.0%
	TACAAGTTCAGGCACATAGG+TGG	-	Chr5:8346555-8346574	None:intergenic	45.0%
	TGTTCCTGGTCTGATTCACT+TGG	-	Chr5:8347174-8347193	None:intergenic	45.0%
!!!	CTTTTTGAGGCCAGGAACAA+TGG	-	Chr5:8347275-8347294	None:intergenic	45.0%
!!!	GATCATACCTTTTTGAGGCC+AGG	-	Chr5:8347283-8347302	None:intergenic	45.0%
	AAGTTCAGGCACATAGGTGG+GGG	-	Chr5:8346552-8346571	None:intergenic	50.0%
	ACAAGCACGTTTGCAGACAC+TGG	+	Chr5:8347963-8347982	MsG0580024696.01.T01:CDS	50.0%
	CAAGTTCAGGCACATAGGTG+GGG	-	Chr5:8346553-8346572	None:intergenic	50.0%
	GCTCTTTCAGCCATTGTTCC+TGG	+	Chr5:8347262-8347281	MsG0580024696.01.T01:CDS	50.0%
!	TAATTGGCCAAGCACCGTAG+CGG	-	Chr5:8348178-8348197	None:intergenic	50.0%
	AGCACGTTTGCAGACACTGG+AGG	+	Chr5:8347966-8347985	MsG0580024696.01.T01:CDS	55.0%
	TCGAGCTTGAGCAGTGTTCC+TGG	-	Chr5:8347188-8347207	None:intergenic	55.0%
!	ACACAGTGGACGTGCCGCTA+CGG	+	Chr5:8348161-8348180	MsG0580024696.01.T01:CDS	60.0%
!	GGACGTGCCGCTACGGTGCT+TGG	+	Chr5:8348168-8348187	MsG0580024696.01.T01:CDS	70.0%

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	8346264	8348299	8346264	ID=MsG0580024696.01;Name=MsG0580024696.01
Chr5	mRNA	8346264	8348299	8346264	ID=MsG0580024696.01.T01;Parent=MsG0580024696.01;Name=MsG0580024696.01.T01;_AED=0.30;_eAED=0.31;_QI=74\|0.75\|0.4\|1\|0.5\|0.4\|5\|0\|309
Chr5	exon	8346264	8346334	8346264	ID=MsG0580024696.01.T01:exon:2750;Parent=MsG0580024696.01.T01
Chr5	exon	8346479	8346571	8346479	ID=MsG0580024696.01.T01:exon:2751;Parent=MsG0580024696.01.T01
Chr5	exon	8346789	8347130	8346789	ID=MsG0580024696.01.T01:exon:2752;Parent=MsG0580024696.01.T01
Chr5	exon	8347184	8347294	8347184	ID=MsG0580024696.01.T01:exon:2753;Parent=MsG0580024696.01.T01
Chr5	exon	8347913	8348299	8347913	ID=MsG0580024696.01.T01:exon:2754;Parent=MsG0580024696.01.T01
Chr5	five_prime_UTR	8346264	8346334	8346264	ID=MsG0580024696.01.T01:five_prime_utr;Parent=MsG0580024696.01.T01
Chr5	five_prime_UTR	8346479	8346481	8346479	ID=MsG0580024696.01.T01:five_prime_utr;Parent=MsG0580024696.01.T01
Chr5	CDS	8346482	8346571	8346482	ID=MsG0580024696.01.T01:cds;Parent=MsG0580024696.01.T01
Chr5	CDS	8346789	8347130	8346789	ID=MsG0580024696.01.T01:cds;Parent=MsG0580024696.01.T01
Chr5	CDS	8347184	8347294	8347184	ID=MsG0580024696.01.T01:cds;Parent=MsG0580024696.01.T01
Chr5	CDS	8347913	8348299	8347913	ID=MsG0580024696.01.T01:cds;Parent=MsG0580024696.01.T01

Gene Sequence

>MsG0580024696.01.T01

ATGTCCCATACCACATCTAATCAAATCGAAGTTTTAGGAAAGAAACTGAAGATGATGCAAATTATGTCCCCCACCTATGTGCCTGAACTTGGAATGGAGGATCTCAACTTCTTTAACCAATACCCGATGGATTCTCTTGCATCTCCAATATTATTCGACAACTTTGGCTTTCACTTTGATGACAACGAAACCACACCAAATTGTTTCCCAGTTGAAACTCATCTTGATGATCAAACAAGGCCAACCAAGAAGATCAAAACATCGATAAACCCTTCTTCCTATTCATCACCTCAACTCATTTCTTTTGAACACTCCAGTTCAACACCAATTGCTTCTAAGCAATTTTATAACCTTGATTATTCCGATGTAAAACCTAAAGTCGAGAAAAGGTGTAATGATAACAAAGATTTTCTTCCAGCTTTGTTTCTCAAGACCAGGAACACTGCTCAAGCTCGAGAACATGTAATGGCCGAAAGAAAACGAAGGGAAAAGCTTACCCGAAGTTTCATCGCTCTTTCAGCCATTGTTCCTGGCCTCAAAAAGATGGACAAAGCTTCTGTGTTGGGAGATGCTATCAAGTACATGAAACAACTACAAGCACGTTTGCAGACACTGGAGGAACAAGCTGAAGACAACAAAAAAACTGGATCCACAGTTCAAGTGAAGAGATCTATTATCTTCACTAATGATGACGATGATGATGATGATAGCAACTCCAATAACCAACCACTTCCTGAAATCGAAGTAAGAGTATCAAGCAAAGATGTACTCATCAAGATTCAATGTGACAAACACAGTGGACGTGCCGCTACGGTGCTTGGCCAATTAGAAAACCTTAATCTCACTGTCCAAAGTAGTACCTTTTTGCCCTTTGGAAACAACATTGTTGATGTAACCATTGTTGCTAAGGTAAATAAATTAATAATTTAA

Protein sequence

>MsG0580024696.01.T01

MSHTTSNQIEVLGKKLKMMQIMSPTYVPELGMEDLNFFNQYPMDSLASPILFDNFGFHFDDNETTPNCFPVETHLDDQTRPTKKIKTSINPSSYSSPQLISFEHSSSTPIASKQFYNLDYSDVKPKVEKRCNDNKDFLPALFLKTRNTAQAREHVMAERKRREKLTRSFIALSAIVPGLKKMDKASVLGDAIKYMKQLQARLQTLEEQAEDNKKTGSTVQVKRSIIFTNDDDDDDDSNSNNQPLPEIEVRVSSKDVLIKIQCDKHSGRAATVLGQLENLNLTVQSSTFLPFGNNIVDVTIVAKVNKLII*