AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024765.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024765.01.T01 MTR_5g016110 97.087 206 6 0 235 440 408 613 9.22e-151 442
MsG0580024765.01.T01 MTR_5g016110 59.425 313 51 6 1 237 1 313 6.13e-101 314
MsG0580024765.01.T01 MTR_5g016110 59.425 313 51 6 1 237 1 313 2.75e-102 315
MsG0580024765.01.T01 MTR_5g016110 97.581 124 3 0 235 358 408 531 9.27e-88 277
MsG0580024765.01.T01 MTR_5g016110 97.581 124 3 0 235 358 350 473 1.90e-87 275
MsG0580024765.01.T01 MTR_5g016110 44.608 204 40 5 107 237 52 255 1.51e-34 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024765.01.T01 AT4G37480 63.115 122 45 0 237 358 402 523 4.12e-54 189
MsG0580024765.01.T01 AT4G37480 31.935 310 127 10 40 278 41 337 5.11e-29 119
MsG0580024765.01.T01 AT4G13830 31.538 130 73 4 3 119 4 130 3.37e-11 62.0
MsG0580024765.01.T01 AT4G13830 31.579 133 75 4 3 122 4 133 6.87e-11 62.0
MsG0580024765.01.T01 AT4G13830 31.538 130 73 4 3 119 4 130 8.93e-11 61.2

Find 0 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAATACTGTTAATATT+AGG - Chr5:9395411-9395430 MsG0580024765.01.T01:intron 10.0%
!! AAATTATCAATTATTGTGTA+AGG - Chr5:9392234-9392253 MsG0580024765.01.T01:intron 15.0%
!! AATCAAAATTTGCATTTATT+TGG - Chr5:9395128-9395147 MsG0580024765.01.T01:intron 15.0%
!! ATAATTGATATTGAAGAAAT+TGG + Chr5:9391659-9391678 None:intergenic 15.0%
!! ATTCTTATAAAGTTAAAAGA+AGG + Chr5:9394989-9395008 None:intergenic 15.0%
!! GAAAAGAATCAAAATAAATA+AGG + Chr5:9392846-9392865 None:intergenic 15.0%
!! TAATTTGATATAATATACAG+CGG + Chr5:9392220-9392239 None:intergenic 15.0%
!! TTTATATTCTTTATGTTTAG+TGG - Chr5:9392108-9392127 MsG0580024765.01.T01:intron 15.0%
!!! ATTATTATTGCATTGATTTT+TGG - Chr5:9392425-9392444 MsG0580024765.01.T01:intron 15.0%
!!! TTTTAGATATGTTGTATTTT+AGG - Chr5:9392504-9392523 MsG0580024765.01.T01:intron 15.0%
!! AAAACATTTAGAAATGCTAT+TGG - Chr5:9395709-9395728 MsG0580024765.01.T01:intron 20.0%
!! AAGGGGTTAATATTATTAAA+AGG + Chr5:9394789-9394808 None:intergenic 20.0%
!! AATACAAAAAAGAAAAGACT+TGG + Chr5:9394073-9394092 None:intergenic 20.0%
!! AATACTGTTAATATTAGGTT+GGG - Chr5:9395416-9395435 MsG0580024765.01.T01:intron 20.0%
!! ATATGTGTTATCTTTATGAT+AGG + Chr5:9392962-9392981 None:intergenic 20.0%
!! TAATACTGTTAATATTAGGT+TGG - Chr5:9395415-9395434 MsG0580024765.01.T01:intron 20.0%
!! TAATTCAGTAAATAAAGCTA+AGG + Chr5:9395250-9395269 None:intergenic 20.0%
!! TAGATAGCATATTAGAAATT+TGG + Chr5:9395347-9395366 None:intergenic 20.0%
!! TCTAAATAGTAAAAGAAACA+TGG - Chr5:9394093-9394112 MsG0580024765.01.T01:CDS 20.0%
!! TTAATACTTGGAACTTAAAA+TGG - Chr5:9394028-9394047 MsG0580024765.01.T01:intron 20.0%
!! TTTGTAGTTATTATAGAGTA+TGG + Chr5:9394641-9394660 None:intergenic 20.0%
!!! ATTTCAAGTGTAGATTTATT+GGG - Chr5:9394460-9394479 MsG0580024765.01.T01:intron 20.0%
!!! GTTATTTCTAATATTGTACA+TGG - Chr5:9392880-9392899 MsG0580024765.01.T01:CDS 20.0%
!!! TATTTCAAGTGTAGATTTAT+TGG - Chr5:9394459-9394478 MsG0580024765.01.T01:intron 20.0%
!!! TATTTTGATTCTTTTCAATG+TGG - Chr5:9392850-9392869 MsG0580024765.01.T01:CDS 20.0%
!!! TTGTATTTTAGGTTTTGAAT+TGG - Chr5:9392515-9392534 MsG0580024765.01.T01:intron 20.0%
! AAAACAAGTACATGTCATAA+TGG + Chr5:9393135-9393154 None:intergenic 25.0%
! AAAAGATAAACTTCTTCTGA+TGG + Chr5:9395025-9395044 None:intergenic 25.0%
! AAACAAGTACATGTCATAAT+GGG + Chr5:9393134-9393153 None:intergenic 25.0%
! AATAATAATGAACACAGGAA+CGG + Chr5:9392414-9392433 None:intergenic 25.0%
! AATGCAATAATAATGAACAC+AGG + Chr5:9392419-9392438 None:intergenic 25.0%
! ATAAACAAATCTGTAGACTT+TGG - Chr5:9395083-9395102 MsG0580024765.01.T01:intron 25.0%
! ATAGTAAAAGAAACATGGTA+TGG - Chr5:9394098-9394117 MsG0580024765.01.T01:CDS 25.0%
! ATGTTCTAATGCAATTCAAA+CGG - Chr5:9393751-9393770 MsG0580024765.01.T01:intron 25.0%
! CAAGTTATATTAGACATGAT+GGG - Chr5:9392718-9392737 MsG0580024765.01.T01:intron 25.0%
! CATGAAACATAGAACATTAT+TGG - Chr5:9393972-9393991 MsG0580024765.01.T01:intron 25.0%
! CTTTATAAGAATTGCTGTAA+TGG - Chr5:9394997-9395016 MsG0580024765.01.T01:intron 25.0%
! TAAACAAATCTGTAGACTTT+GGG - Chr5:9395084-9395103 MsG0580024765.01.T01:intron 25.0%
! TAATTTATTGACAGTGCATA+AGG + Chr5:9395800-9395819 None:intergenic 25.0%
! TAGATGTCTAATGAAACAAA+TGG + Chr5:9395370-9395389 None:intergenic 25.0%
! TAGTAAAAGAAACATGGTAT+GGG - Chr5:9394099-9394118 MsG0580024765.01.T01:CDS 25.0%
! TCAAGTTATATTAGACATGA+TGG - Chr5:9392717-9392736 MsG0580024765.01.T01:intron 25.0%
! TTATTTACAAATAGCACAGT+TGG - Chr5:9393852-9393871 MsG0580024765.01.T01:intron 25.0%
! TTCAGGGAATATTGAATTAA+CGG - Chr5:9393061-9393080 MsG0580024765.01.T01:intron 25.0%
! TTTCATTTGATCGAACTATT+GGG + Chr5:9392292-9392311 None:intergenic 25.0%
!! AAAAGGATTTCAAGTAGTAT+TGG + Chr5:9394772-9394791 None:intergenic 25.0%
!! AAATGTTTTCTTGCTTGTTT+TGG + Chr5:9395698-9395717 None:intergenic 25.0%
!! ATACTGTTAATATTAGGTTG+GGG - Chr5:9395417-9395436 MsG0580024765.01.T01:intron 25.0%
!! ATATTTTGTTAGAGAAGAAG+TGG - Chr5:9393283-9393302 MsG0580024765.01.T01:intron 25.0%
!! CTTAATGTCATGGATTAAAT+TGG - Chr5:9392080-9392099 MsG0580024765.01.T01:CDS 25.0%
!! TATTAGAAATTTGGTTCCAA+CGG + Chr5:9395338-9395357 None:intergenic 25.0%
!! TTTTCATTTGATCGAACTAT+TGG + Chr5:9392293-9392312 None:intergenic 25.0%
!! TTTTGTTAGTTCATAACCAT+AGG - Chr5:9392151-9392170 MsG0580024765.01.T01:intron 25.0%
!!! AAGAGTTTAGTTTGTAAAGA+AGG + Chr5:9392817-9392836 None:intergenic 25.0%
!!! AGAGTTTAGTTTGTAAAGAA+GGG + Chr5:9392816-9392835 None:intergenic 25.0%
!!! ATAAGTTTTGTGAGACTTTT+TGG + Chr5:9392031-9392050 None:intergenic 25.0%
!!! ATGGTCTTATACATATTTAG+AGG - Chr5:9392899-9392918 MsG0580024765.01.T01:CDS 25.0%
!!! CAGCTTATTTTCATAAGTTT+CGG + Chr5:9391973-9391992 None:intergenic 25.0%
!!! GAAGTTTTTTACATGCATTT+TGG - Chr5:9395179-9395198 MsG0580024765.01.T01:intron 25.0%
!!! TATTGCATTGATTTTTGGAT+AGG - Chr5:9392430-9392449 MsG0580024765.01.T01:intron 25.0%
!!! TATTTGAAATTTTAGAGCTG+CGG + Chr5:9393653-9393672 None:intergenic 25.0%
!!! TGGTCTTATACATATTTAGA+GGG - Chr5:9392900-9392919 MsG0580024765.01.T01:CDS 25.0%
!!! TTTTTACATGCATTTTGGTT+TGG - Chr5:9395184-9395203 MsG0580024765.01.T01:intron 25.0%
AACATATGGCAAAGATAAGA+AGG - Chr5:9394876-9394895 MsG0580024765.01.T01:intron 30.0%
AACTCTCAATTGTGTTGAAA+TGG - Chr5:9394536-9394555 MsG0580024765.01.T01:CDS 30.0%
AAGTTGTTGAATGGTTAAAG+TGG - Chr5:9393241-9393260 MsG0580024765.01.T01:intron 30.0%
ACATATGGCAAAGATAAGAA+GGG - Chr5:9394877-9394896 MsG0580024765.01.T01:intron 30.0%
ACTGCACGTAATTTAAGAAT+CGG + Chr5:9394707-9394726 None:intergenic 30.0%
AGCCAAAATCTGTATAACTA+AGG + Chr5:9394808-9394827 None:intergenic 30.0%
AGTCATTGTGTAGTTGTAAA+TGG + Chr5:9395909-9395928 None:intergenic 30.0%
ATATTCATGACTTTAACTGC+TGG - Chr5:9392978-9392997 MsG0580024765.01.T01:intron 30.0%
ATCCATGACATTAAGATGTT+AGG + Chr5:9392075-9392094 None:intergenic 30.0%
ATCTCTCTATTACTGATGTT+TGG - Chr5:9394266-9394285 MsG0580024765.01.T01:intron 30.0%
ATGATCTTGCTAGAAATTCT+GGG - Chr5:9394126-9394145 MsG0580024765.01.T01:CDS 30.0%
ATTAAAGCTTGAAGTGGTAT+GGG - Chr5:9394496-9394515 MsG0580024765.01.T01:intron 30.0%
CATAACTCATCTTTACAGAA+CGG - Chr5:9392637-9392656 MsG0580024765.01.T01:intron 30.0%
CCAAAATCTGTATAACTAAG+GGG + Chr5:9394806-9394825 None:intergenic 30.0%
CGGATATAGTTTATGAAAAG+AGG + Chr5:9391953-9391972 None:intergenic 30.0%
GAATTAAGTAAACAGAGCTA+AGG + Chr5:9395284-9395303 None:intergenic 30.0%
GCCAAAATCTGTATAACTAA+GGG + Chr5:9394807-9394826 None:intergenic 30.0%
GGAGTGATATTGTAGATTTA+TGG - Chr5:9394598-9394617 MsG0580024765.01.T01:CDS 30.0%
GTAGATGCAAATTCATGAAA+AGG + Chr5:9392392-9392411 None:intergenic 30.0%
GTAGATTTATTGGGCATTAA+AGG - Chr5:9394469-9394488 MsG0580024765.01.T01:intron 30.0%
GTTCCAAGTATTAAACCAAT+AGG + Chr5:9394022-9394041 None:intergenic 30.0%
TACTATCACTTGTAGTCTAT+GGG + Chr5:9395520-9395539 None:intergenic 30.0%
TAGCCTCTTCAAAAAAGAAT+CGG + Chr5:9394673-9394692 None:intergenic 30.0%
TCATCTAACTTCTAACAAAG+TGG + Chr5:9394393-9394412 None:intergenic 30.0%
TCCATGACATTAAGATGTTA+GGG + Chr5:9392074-9392093 None:intergenic 30.0%
TGAATTGCATTAGAACATCT+AGG + Chr5:9393749-9393768 None:intergenic 30.0%
TGGGTTATGATAAAACTTTC+AGG - Chr5:9394145-9394164 MsG0580024765.01.T01:CDS 30.0%
TTATACATATTTAGAGGGCA+TGG - Chr5:9392905-9392924 MsG0580024765.01.T01:CDS 30.0%
TTCAATTTCACAACATCCTA+TGG + Chr5:9392170-9392189 None:intergenic 30.0%
TTGAAATACAAACCAGATGA+TGG + Chr5:9394447-9394466 None:intergenic 30.0%
TTGTAAAAAATGCTCTCTGT+AGG - Chr5:9396120-9396139 MsG0580024765.01.T01:CDS 30.0%
! AATGTCATGGATTAAATTGG+CGG - Chr5:9392083-9392102 MsG0580024765.01.T01:CDS 30.0%
! AATTCATCTTTTGATCTTCC+TGG - Chr5:9396004-9396023 MsG0580024765.01.T01:CDS 30.0%
! ACGTTGTTCTTTTCTTTTCA+GGG - Chr5:9393045-9393064 MsG0580024765.01.T01:intron 30.0%
! AGTACTGAAAGGTAAATTAG+AGG - Chr5:9395949-9395968 MsG0580024765.01.T01:CDS 30.0%
! TTTTCAGTAGATGATATCTC+TGG + Chr5:9393520-9393539 None:intergenic 30.0%
!! ATGGTGTTATTATACCATCT+TGG - Chr5:9394555-9394574 MsG0580024765.01.T01:CDS 30.0%
!! GAGTTTAGTTTGTAAAGAAG+GGG + Chr5:9392815-9392834 None:intergenic 30.0%
!! GGTCAACACATTATTTTACT+AGG + Chr5:9394372-9394391 None:intergenic 30.0%
!! TGGTGTTATTATACCATCTT+GGG - Chr5:9394556-9394575 MsG0580024765.01.T01:CDS 30.0%
!! TGTCCTATTGGTTTAATACT+TGG - Chr5:9394016-9394035 MsG0580024765.01.T01:intron 30.0%
!!! TACCATCATAGGTTTTGAAT+TGG - Chr5:9392613-9392632 MsG0580024765.01.T01:intron 30.0%
AAAAGCTACTGCTGATATGT+GGG + Chr5:9393824-9393843 None:intergenic 35.0%
AAACTCTATAGACAAGTGCA+TGG + Chr5:9395584-9395603 None:intergenic 35.0%
AAAGAATCTGCAACACATCA+TGG + Chr5:9393093-9393112 None:intergenic 35.0%
AACTCTATAGACAAGTGCAT+GGG + Chr5:9395583-9395602 None:intergenic 35.0%
AATTAGTTGCTACAGCATCT+AGG - Chr5:9393717-9393736 MsG0580024765.01.T01:intron 35.0%
ACAAAACTTATGCTCCAAAC+AGG - Chr5:9392040-9392059 MsG0580024765.01.T01:CDS 35.0%
ACAACTACACAATGACTCTT+TGG - Chr5:9395912-9395931 MsG0580024765.01.T01:CDS 35.0%
ACACTTTCTGCTCTTAGAAA+AGG - Chr5:9394312-9394331 MsG0580024765.01.T01:CDS 35.0%
ACTATCACTTGTAGTCTATG+GGG + Chr5:9395519-9395538 None:intergenic 35.0%
ACTGAACTGAATGTCTCAAT+CGG - Chr5:9396049-9396068 MsG0580024765.01.T01:CDS 35.0%
AGCCTCTTCAAAAAAGAATC+GGG + Chr5:9394672-9394691 None:intergenic 35.0%
ATTAGTTGCTACAGCATCTA+GGG - Chr5:9393718-9393737 MsG0580024765.01.T01:intron 35.0%
ATTGGGTATGGAATATCCTT+CGG + Chr5:9392275-9392294 None:intergenic 35.0%
CAATATCACTCCATCTTTCA+TGG + Chr5:9394590-9394609 None:intergenic 35.0%
CAATATTACTAAGCGTGTGA+GGG + Chr5:9392562-9392581 None:intergenic 35.0%
CAGTAAATAAAGCTAAGGAC+TGG + Chr5:9395245-9395264 None:intergenic 35.0%
CATGATCTTGCTAGAAATTC+TGG - Chr5:9394125-9394144 MsG0580024765.01.T01:CDS 35.0%
CATGGGATAGAATCAATTTC+GGG + Chr5:9393380-9393399 None:intergenic 35.0%
CATTAAAGCTTGAAGTGGTA+TGG - Chr5:9394495-9394514 MsG0580024765.01.T01:intron 35.0%
CCATGGGATAGAATCAATTT+CGG + Chr5:9393381-9393400 None:intergenic 35.0%
CTACTATCACTTGTAGTCTA+TGG + Chr5:9395521-9395540 None:intergenic 35.0%
CTGCACGTAATTTAAGAATC+GGG + Chr5:9394706-9394725 None:intergenic 35.0%
GACCAATTCAAAACCTATGA+TGG + Chr5:9392618-9392637 None:intergenic 35.0%
GAGACATTCAGTTCAGTATT+TGG + Chr5:9396046-9396065 None:intergenic 35.0%
GTATGTGTCTAGTTAGTAGT+CGG - Chr5:9392454-9392473 MsG0580024765.01.T01:intron 35.0%
GTATTAAACCAATAGGACAG+CGG + Chr5:9394015-9394034 None:intergenic 35.0%
GTCCAACTCAAAACCTAAAA+TGG + Chr5:9392751-9392770 None:intergenic 35.0%
TATTAAACCAATAGGACAGC+GGG + Chr5:9394014-9394033 None:intergenic 35.0%
TCCCTAACATCTTAATGTCA+TGG - Chr5:9392070-9392089 MsG0580024765.01.T01:CDS 35.0%
TCTATGTTTCATGATCGCAT+GGG + Chr5:9393965-9393984 None:intergenic 35.0%
TGCACGTAATTTAAGAATCG+GGG + Chr5:9394705-9394724 None:intergenic 35.0%
TGGGATCTTCATCTGAATTA+AGG + Chr5:9393805-9393824 None:intergenic 35.0%
TGTGTAGTTGTAAATGGACA+AGG + Chr5:9395903-9395922 None:intergenic 35.0%
TGTTGAGTTCCAAAATCATC+TGG + Chr5:9393627-9393646 None:intergenic 35.0%
TTCTATGTTTCATGATCGCA+TGG + Chr5:9393966-9393985 None:intergenic 35.0%
TTCTTACAGATCCTTCCATT+CGG - Chr5:9393551-9393570 MsG0580024765.01.T01:CDS 35.0%
TTGCATTAGAACATCTAGGT+AGG + Chr5:9393745-9393764 None:intergenic 35.0%
TTTGATCGAACTATTGGGTA+TGG + Chr5:9392287-9392306 None:intergenic 35.0%
! CATACCACTTCAAGCTTTAA+TGG + Chr5:9394497-9394516 None:intergenic 35.0%
! CCCCTTAGTTATACAGATTT+TGG - Chr5:9394803-9394822 MsG0580024765.01.T01:intron 35.0%
! CTTTACAGAACGGATTTGTA+AGG - Chr5:9392647-9392666 MsG0580024765.01.T01:intron 35.0%
! GACGTTGTTCTTTTCTTTTC+AGG - Chr5:9393044-9393063 MsG0580024765.01.T01:intron 35.0%
! GGTTGGTATGTTGAAACATA+TGG - Chr5:9394862-9394881 MsG0580024765.01.T01:intron 35.0%
! GTGCAGAAAACTTGTTCAAT+AGG - Chr5:9395759-9395778 MsG0580024765.01.T01:intron 35.0%
!! AGTTGGTAGCAAAATCCATT+TGG - Chr5:9393869-9393888 MsG0580024765.01.T01:intron 35.0%
!! ATTCTAGAGCTTTACTTGCT+TGG + Chr5:9394248-9394267 None:intergenic 35.0%
!! GAGACTTTTTGGAGAACTTA+TGG + Chr5:9392020-9392039 None:intergenic 35.0%
!! GTTAATATTAGGTTGGGGAT+GGG - Chr5:9395422-9395441 MsG0580024765.01.T01:intron 35.0%
!! GTTGGTAGCAAAATCCATTT+GGG - Chr5:9393870-9393889 MsG0580024765.01.T01:intron 35.0%
!! TGTTAATATTAGGTTGGGGA+TGG - Chr5:9395421-9395440 MsG0580024765.01.T01:intron 35.0%
!! TTTCAGGTCGTGATCTTTTT+GGG - Chr5:9393470-9393489 MsG0580024765.01.T01:intron 35.0%
!!! GACCATTTTAGGTTTTGAGT+TGG - Chr5:9392746-9392765 MsG0580024765.01.T01:intron 35.0%
!!! GGTGTTTTCTGCTGATTTAT+TGG - Chr5:9392926-9392945 MsG0580024765.01.T01:intron 35.0%
AACAAATCGTTTAGACGCAG+TGG + Chr5:9391891-9391910 None:intergenic 40.0%
AACCTCAGGAGTTTCATAAG+AGG + Chr5:9393440-9393459 None:intergenic 40.0%
AATGTTGTGCAACTATCTCC+AGG + Chr5:9396099-9396118 None:intergenic 40.0%
ACATAACAACATCCTTCGTC+TGG + Chr5:9393920-9393939 None:intergenic 40.0%
ACCCACAAGACATCATATCA+TGG + Chr5:9393015-9393034 None:intergenic 40.0%
ACGCTTAGTAATATTGGACC+TGG - Chr5:9392566-9392585 MsG0580024765.01.T01:intron 40.0%
ACTCTATAGACAAGTGCATG+GGG + Chr5:9395582-9395601 None:intergenic 40.0%
AGAGCAAACAGATACATTGC+TGG + Chr5:9395646-9395665 None:intergenic 40.0%
AGATTCTTTCAGATGCTAGG+AGG - Chr5:9393104-9393123 MsG0580024765.01.T01:intron 40.0%
AGGAGATGGAAGTTGTTGAA+TGG - Chr5:9393232-9393251 MsG0580024765.01.T01:intron 40.0%
ATATGTTCCGAGTTCTTCAC+TGG - Chr5:9395737-9395756 MsG0580024765.01.T01:intron 40.0%
ATCCATTTGGGAACCATATC+TGG - Chr5:9393882-9393901 MsG0580024765.01.T01:intron 40.0%
ATTATAGCGAGCAAGCTGAA+AGG - Chr5:9394938-9394957 MsG0580024765.01.T01:intron 40.0%
ATTCACACGAACCTCATAAG+CGG + Chr5:9391924-9391943 None:intergenic 40.0%
CATGTAGATAAGACTACGTG+AGG + Chr5:9395975-9395994 None:intergenic 40.0%
CCAATATTACTAAGCGTGTG+AGG + Chr5:9392563-9392582 None:intergenic 40.0%
CCTCACACGCTTAGTAATAT+TGG - Chr5:9392560-9392579 MsG0580024765.01.T01:intron 40.0%
CGTCCATTACAGATTGACAA+AGG + Chr5:9393578-9393597 None:intergenic 40.0%
GAAAAGCTACTGCTGATATG+TGG + Chr5:9393825-9393844 None:intergenic 40.0%
GAACACATGAATGTGATCTC+CGG + Chr5:9393783-9393802 None:intergenic 40.0%
GAGTCATTGCTAGCTCAATT+TGG - Chr5:9395823-9395842 MsG0580024765.01.T01:CDS 40.0%
GCCATGATATGATGTCTTGT+GGG - Chr5:9393011-9393030 MsG0580024765.01.T01:intron 40.0%
GCCTCTTCAAAAAAGAATCG+GGG + Chr5:9394671-9394690 None:intergenic 40.0%
GCTATTCATGCAGCATACTA+CGG - Chr5:9393353-9393372 MsG0580024765.01.T01:intron 40.0%
GGTGAAAGAACCATGAAAGA+TGG - Chr5:9394577-9394596 MsG0580024765.01.T01:CDS 40.0%
GGTTCCATTAAAGCTTGAAG+TGG - Chr5:9394490-9394509 MsG0580024765.01.T01:intron 40.0%
GTAATTTATCCTCAGTCCGT+TGG - Chr5:9395319-9395338 MsG0580024765.01.T01:intron 40.0%
GTTAGAGAAGAAGTGGTAGT+TGG - Chr5:9393290-9393309 MsG0580024765.01.T01:intron 40.0%
TAAGGAGTGGAGTGATAAGA+GGG + Chr5:9395461-9395480 None:intergenic 40.0%
TATCTCAGCACTAGCATCAT+CGG - Chr5:9391617-9391636 MsG0580024765.01.T01:CDS 40.0%
TCATGCCAAGTTTGAATGCA+TGG - Chr5:9392363-9392382 MsG0580024765.01.T01:intron 40.0%
TCTTACAGATCCTTCCATTC+GGG - Chr5:9393552-9393571 MsG0580024765.01.T01:CDS 40.0%
TGCAGATTCTTTCAGATGCT+AGG - Chr5:9393101-9393120 MsG0580024765.01.T01:intron 40.0%
TTAAGGAGTGGAGTGATAAG+AGG + Chr5:9395462-9395481 None:intergenic 40.0%
TTATATGCGTAGCCATCATC+TGG - Chr5:9394432-9394451 MsG0580024765.01.T01:intron 40.0%
TTTAACTGCTGGAAACTTGC+AGG - Chr5:9392989-9393008 MsG0580024765.01.T01:intron 40.0%
! CATATGCACTGGTATCATGT+GGG - Chr5:9394173-9394192 MsG0580024765.01.T01:CDS 40.0%
! CCGAAATTGATTCTATCCCA+TGG - Chr5:9393378-9393397 MsG0580024765.01.T01:intron 40.0%
! GGGTGTATTAGGAACTTGTT+AGG + Chr5:9392542-9392561 None:intergenic 40.0%
! GTAGAAAGGCCAGATGATTT+TGG - Chr5:9393615-9393634 MsG0580024765.01.T01:intron 40.0%
! GTTTCTTCCTGACTGTTTTG+AGG - Chr5:9393402-9393421 MsG0580024765.01.T01:intron 40.0%
! TCTAAGAGCAGAAAGTGTGA+GGG + Chr5:9394310-9394329 None:intergenic 40.0%
! TGTCCAAACTGATTCAGAAG+AGG + Chr5:9391738-9391757 None:intergenic 40.0%
! TTCTAAGAGCAGAAAGTGTG+AGG + Chr5:9394311-9394330 None:intergenic 40.0%
!! ATGCAGAAGCATTCTGAACA+GGG - Chr5:9393168-9393187 MsG0580024765.01.T01:intron 40.0%
!! CGTAGTCTTATCTACATGGT+TGG - Chr5:9395977-9395996 MsG0580024765.01.T01:CDS 40.0%
!! CTCACGTAGTCTTATCTACA+TGG - Chr5:9395973-9395992 MsG0580024765.01.T01:CDS 40.0%
!! GTTTCAGGTCGTGATCTTTT+TGG - Chr5:9393469-9393488 MsG0580024765.01.T01:intron 40.0%
!! TATGCAGAAGCATTCTGAAC+AGG - Chr5:9393167-9393186 MsG0580024765.01.T01:intron 40.0%
!! TCATAATGTTGGTTGGTGGT+TGG + Chr5:9395495-9395514 None:intergenic 40.0%
!! TCTCTGGAATCTTGTTGACT+AGG + Chr5:9393504-9393523 None:intergenic 40.0%
!!! ACCCCGATTCTTTTTTGAAG+AGG - Chr5:9394667-9394686 MsG0580024765.01.T01:intron 40.0%
ACAGTCAGGAAGAAACTCCA+TGG + Chr5:9393398-9393417 None:intergenic 45.0%
AGATGACTTCGATCATGCTG+TGG - Chr5:9394407-9394426 MsG0580024765.01.T01:intron 45.0%
ATAGACAAGTGCATGGGGTT+GGG + Chr5:9395577-9395596 None:intergenic 45.0%
ATCACAGGCTACTGCATTCA+AGG - Chr5:9393212-9393231 MsG0580024765.01.T01:intron 45.0%
ATGGGGCTCATAATGTTGGT+TGG + Chr5:9395502-9395521 None:intergenic 45.0%
ATTGCGCATCTACGAATCAC+AGG - Chr5:9393197-9393216 MsG0580024765.01.T01:intron 45.0%
CAGTCAGGAAGAAACTCCAT+GGG + Chr5:9393397-9393416 None:intergenic 45.0%
CATACCAACCTCCTATGTCA+TGG + Chr5:9394852-9394871 None:intergenic 45.0%
CATGGTTCTTTCACCCAAGA+TGG + Chr5:9394572-9394591 None:intergenic 45.0%
CTAGAGCTTTACTTGCTTGG+TGG + Chr5:9394245-9394264 None:intergenic 45.0%
CTGAATGTCTCAATCGGTCA+AGG - Chr5:9396055-9396074 MsG0580024765.01.T01:CDS 45.0%
GAAACCAAGTGCAAAACCTC+AGG + Chr5:9393454-9393473 None:intergenic 45.0%
GAAGAAGTGGTAGTTGGAAC+AGG - Chr5:9393296-9393315 MsG0580024765.01.T01:intron 45.0%
GCAATTCAAACGGAAGATGC+CGG - Chr5:9393761-9393780 MsG0580024765.01.T01:intron 45.0%
GCACCTCTTCTGAATCAGTT+TGG - Chr5:9391732-9391751 MsG0580024765.01.T01:CDS 45.0%
GGAAGCCATGCATTCAAACT+TGG + Chr5:9392371-9392390 None:intergenic 45.0%
GGCCATGATATGATGTCTTG+TGG - Chr5:9393010-9393029 MsG0580024765.01.T01:intron 45.0%
GGGCCTTTGTCAATCTGTAA+TGG - Chr5:9393572-9393591 MsG0580024765.01.T01:intron 45.0%
GTCCAGATATGGTTCCCAAA+TGG + Chr5:9393887-9393906 None:intergenic 45.0%
GTCCTCTTATGAAACTCCTG+AGG - Chr5:9393435-9393454 MsG0580024765.01.T01:intron 45.0%
GTCTATGGGGCTCATAATGT+TGG + Chr5:9395506-9395525 None:intergenic 45.0%
TAGTCGGACAAATGACTGTG+TGG - Chr5:9392470-9392489 MsG0580024765.01.T01:intron 45.0%
TATAGACAAGTGCATGGGGT+TGG + Chr5:9395578-9395597 None:intergenic 45.0%
TATGCCGTCACAAAGGTTCT+GGG - Chr5:9394906-9394925 MsG0580024765.01.T01:intron 45.0%
TCCTTGACTCAGCAACATCA+GGG + Chr5:9391862-9391881 None:intergenic 45.0%
TCTTCAGCCTCAAAACAGTC+AGG + Chr5:9393412-9393431 None:intergenic 45.0%
TGGTCGTGAGATACCATCAT+AGG - Chr5:9392602-9392621 MsG0580024765.01.T01:intron 45.0%
TGGTTGGAGTGGAAGAGTTA+AGG + Chr5:9395479-9395498 None:intergenic 45.0%
TTCAGGTGAAGCATATGCAC+TGG - Chr5:9394162-9394181 MsG0580024765.01.T01:CDS 45.0%
TTCCTTGACTCAGCAACATC+AGG + Chr5:9391863-9391882 None:intergenic 45.0%
TTCTGCACCAGTGAAGAACT+CGG + Chr5:9395747-9395766 None:intergenic 45.0%
TTGGGAACCATATCTGGACT+TGG - Chr5:9393888-9393907 MsG0580024765.01.T01:intron 45.0%
! AACTCCTGAGGTTTTGCACT+TGG - Chr5:9393447-9393466 MsG0580024765.01.T01:intron 45.0%
! ATGAAACGGTGGTGGTGTTT+GGG + Chr5:9391685-9391704 None:intergenic 45.0%
! GAGGTTTTGCACTTGGTTTC+AGG - Chr5:9393454-9393473 MsG0580024765.01.T01:intron 45.0%
! GATCTAGAGTTGCATGTCTC+TGG - Chr5:9393693-9393712 MsG0580024765.01.T01:intron 45.0%
! GATGCTCTGCTAGTACTGAA+AGG - Chr5:9395938-9395957 MsG0580024765.01.T01:CDS 45.0%
! GATGGGTGAGAGACCATTTT+AGG - Chr5:9392735-9392754 MsG0580024765.01.T01:intron 45.0%
! GCATATGCACTGGTATCATG+TGG - Chr5:9394172-9394191 MsG0580024765.01.T01:CDS 45.0%
! TAAGCGTGTGAGGGTGTATT+AGG + Chr5:9392553-9392572 None:intergenic 45.0%
! TCAAATCCTTGCCGCTTATG+AGG - Chr5:9391910-9391929 MsG0580024765.01.T01:intron 45.0%
! TGATCGCATGGGTCTTTTCA+CGG + Chr5:9393954-9393973 None:intergenic 45.0%
!! AATTTGGTTCCAACGGACTG+AGG + Chr5:9395331-9395350 None:intergenic 45.0%
!! AGGTCGTGATCTTTTTGGGA+TGG - Chr5:9393474-9393493 MsG0580024765.01.T01:intron 45.0%
!! CATTGCAAAACCGACTTGCA+AGG - Chr5:9392780-9392799 MsG0580024765.01.T01:intron 45.0%
!! TGATTCAGAAGAGGTGCTGA+AGG + Chr5:9391729-9391748 None:intergenic 45.0%
!! TTTTGATCTTCCTGGTGCTG+TGG - Chr5:9396012-9396031 MsG0580024765.01.T01:CDS 45.0%
!!! ACTGTTTTGAGGCTGAAGAG+AGG - Chr5:9393413-9393432 MsG0580024765.01.T01:intron 45.0%
AACTATCTCCAGGCAAGGCA+CGG + Chr5:9396089-9396108 None:intergenic 50.0%
AAGCTCGTACGCGTTCTCTA+TGG + Chr5:9391768-9391787 None:intergenic 50.0%
ACCCTGATGTTGCTGAGTCA+AGG - Chr5:9391858-9391877 MsG0580024765.01.T01:intron 50.0%
AGCTCGTACGCGTTCTCTAT+GGG + Chr5:9391767-9391786 None:intergenic 50.0%
CAGATTGACAAAGGCCCGAA+TGG + Chr5:9393569-9393588 None:intergenic 50.0%
CCATCCCAGAACCTTTGTGA+CGG + Chr5:9394913-9394932 None:intergenic 50.0%
CTATGCCGTCACAAAGGTTC+TGG - Chr5:9394905-9394924 MsG0580024765.01.T01:intron 50.0%
GACCATATTATCCACGCACC+AGG + Chr5:9392587-9392606 None:intergenic 50.0%
GACCTGGTGCGTGGATAATA+TGG - Chr5:9392582-9392601 MsG0580024765.01.T01:intron 50.0%
GACGACGTAGCGTGATGAAA+CGG + Chr5:9391699-9391718 None:intergenic 50.0%
GAGTGCTCCAAGTCCAGATA+TGG + Chr5:9393898-9393917 None:intergenic 50.0%
GCACCAGCAGGAATGTAGAA+AGG - Chr5:9393601-9393620 MsG0580024765.01.T01:intron 50.0%
GCTTCCATGACATAGGAGGT+TGG - Chr5:9394845-9394864 MsG0580024765.01.T01:intron 50.0%
GGAGTGGAAGAGTTAAGGAG+TGG + Chr5:9395474-9395493 None:intergenic 50.0%
GGCTACTGCATTCAAGGAGA+TGG - Chr5:9393218-9393237 MsG0580024765.01.T01:intron 50.0%
GTAATATTGGACCTGGTGCG+TGG - Chr5:9392573-9392592 MsG0580024765.01.T01:intron 50.0%
GTCGTACTATGCCGTCACAA+AGG - Chr5:9394899-9394918 MsG0580024765.01.T01:intron 50.0%
TGGAGTGATAAGAGGGTCGA+GGG + Chr5:9395454-9395473 None:intergenic 50.0%
TGGCCTTTCTACATTCCTGC+TGG + Chr5:9393607-9393626 None:intergenic 50.0%
TGTGCAACTATCTCCAGGCA+AGG + Chr5:9396094-9396113 None:intergenic 50.0%
TGTGGCTTCCATGACATAGG+AGG - Chr5:9394841-9394860 MsG0580024765.01.T01:intron 50.0%
TTAGGGACTGAGAGCCTGTT+TGG + Chr5:9392057-9392076 None:intergenic 50.0%
TTGACAAAGGCCCGAATGGA+AGG + Chr5:9393565-9393584 None:intergenic 50.0%
TTGCTATCCCGCTGTCCTAT+TGG - Chr5:9394004-9394023 MsG0580024765.01.T01:intron 50.0%
! GAGCAGTCTATTAGTGCCGA+AGG - Chr5:9392256-9392275 MsG0580024765.01.T01:intron 50.0%
! GATGAAACGGTGGTGGTGTT+TGG + Chr5:9391686-9391705 None:intergenic 50.0%
! GGGCTCATAATGTTGGTTGG+TGG + Chr5:9395499-9395518 None:intergenic 50.0%
! TGAAACGGTGGTGGTGTTTG+GGG + Chr5:9391684-9391703 None:intergenic 50.0%
!! AAACCGACTTGCAAGGTGAG+AGG - Chr5:9392787-9392806 MsG0580024765.01.T01:intron 50.0%
!! ACAAAGGTTCTGGGATGGCT+TGG - Chr5:9394915-9394934 MsG0580024765.01.T01:intron 50.0%
!! ACATCTCTGAAACGCGACTG+TGG + Chr5:9395219-9395238 None:intergenic 50.0%
!! ATGTTGGTTGGTGGTTGGAG+TGG + Chr5:9395490-9395509 None:intergenic 50.0%
!! CATCTCTGAAACGCGACTGT+GGG + Chr5:9395218-9395237 None:intergenic 50.0%
!! TTCCTGGTGCTGTGGTCTAT+TGG - Chr5:9396020-9396039 MsG0580024765.01.T01:CDS 50.0%
ATGTCATGGAAGCCACAGCG+AGG + Chr5:9394838-9394857 None:intergenic 55.0%
CACGAACCTCATAAGCGGCA+AGG + Chr5:9391919-9391938 None:intergenic 55.0%
CGCTGTGGCTTCCATGACAT+AGG - Chr5:9394838-9394857 MsG0580024765.01.T01:intron 55.0%
GACGTAGCGTGATGAAACGG+TGG + Chr5:9391696-9391715 None:intergenic 55.0%
GCACCTCTCACCTTGCAAGT+CGG + Chr5:9392793-9392812 None:intergenic 55.0%
GTAGCGTGATGAAACGGTGG+TGG + Chr5:9391693-9391712 None:intergenic 55.0%
GTGGAGTGATAAGAGGGTCG+AGG + Chr5:9395455-9395474 None:intergenic 55.0%
TGGCTATTTGAGCCTCGCTG+TGG - Chr5:9394823-9394842 MsG0580024765.01.T01:intron 55.0%
! ACTTGGAGCACTCCAGACGA+AGG - Chr5:9393905-9393924 MsG0580024765.01.T01:intron 55.0%
! GCTTGGTGGTAAACGTGCTC+TGG + Chr5:9394231-9394250 None:intergenic 55.0%
! TAATGGACGTGAGCACCAGC+AGG - Chr5:9393589-9393608 MsG0580024765.01.T01:intron 55.0%
! TGCATGGGGTTGGGTTGTTG+AGG + Chr5:9395568-9395587 None:intergenic 55.0%
!! CCGTCACAAAGGTTCTGGGA+TGG - Chr5:9394910-9394929 MsG0580024765.01.T01:intron 55.0%
GGCCAATAGACCACAGCACC+AGG + Chr5:9396025-9396044 None:intergenic 60.0%
! ACTAGCTTCCGTGCCTTGCC+TGG - Chr5:9396078-9396097 MsG0580024765.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 9391611 9396141 9391611 ID=MsG0580024765.01;
Chr5 mRNA 9391611 9396141 9391611 ID=MsG0580024765.01.T01;Parent=MsG0580024765.01
Chr5 CDS 9391611 9391859 9391611 ID=MsG0580024765.01.T01.cds;Parent=MsG0580024765.01.T01
Chr5 CDS 9391981 9392119 9391981 ID=MsG0580024765.01.T01.cds;Parent=MsG0580024765.01.T01
Chr5 CDS 9392793 9392933 9392793 ID=MsG0580024765.01.T01.cds;Parent=MsG0580024765.01.T01
Chr5 CDS 9393500 9393585 9393500 ID=MsG0580024765.01.T01.cds;Parent=MsG0580024765.01.T01
Chr5 CDS 9394045 9394192 9394045 ID=MsG0580024765.01.T01.cds;Parent=MsG0580024765.01.T01
Chr5 CDS 9394296 9394386 9394296 ID=MsG0580024765.01.T01.cds;Parent=MsG0580024765.01.T01
Chr5 CDS 9394499 9394646 9394499 ID=MsG0580024765.01.T01.cds;Parent=MsG0580024765.01.T01
Chr5 CDS 9395821 9396141 9395821 ID=MsG0580024765.01.T01.cds;Parent=MsG0580024765.01.T01
Gene Sequence

>MsG0580024765.01.T01

ATGACTTATCTCAGCACTAGCATCATCGGAATCAATAGTCAGAAACCAATTTCTTCAATATCAATTATTACCCCAAACACCACCACCGTTTCATCACGCTACGTCGTCGTTTATGCCTTCAGCACCTCTTCTGAATCAGTTTGGACAGATTTTCCCATAGAGAACGCGTACGAGCTTCTAGAAGTTTCGCAAACAAGCTCATTCGATGAGATCAAAGCTTCGTTTTCGCAAATTTGCGAAAGAACTCACCCTGATGTTGCTGAGTCAAGGAACGATTCCACTGCGTCTAAACGATTTGTTCAAATCCTTGCCGCTTATGAGATTCTTTCAGATGCTAGGAGGAGAGCCCATTATGACATGTACTTGTTTTCTCAGAAAAAGCTATGCAGAAGCATTCTGAACAGGGTTCAAAATTGCGCATCTACGAATCACAGGCTACTGCATTCAAGGAGATGGAAGTTGTTGAATGCATACTACGGTCCCGAAATTGATTCTATCCCATGGAGTTTCTTCCTGACTGTTTTGAGGCTGAAGAGAGGTCCTCTTATGAAACTCCTGAGATCCTTCCATTCGGGCCTTTGTCAATCTGTAATGGACGTGAGCACCAGCAGGAATGTAGAAAGGCCAGATGATTTTGGAACTCAACAAAGCCGCAGCTCTAAAATTTCAAATAATGTATCAGATGCGTATAGAGATCTAGAGTTGCATGTGAAGCATATGCACTGGTATCATGTGGGTGAGAAAGTGTCAGTTTGCGAGTGTAGATGCACCAGAGCACGTTTACCACCAAGCAAATTTTGGCTATTTGAGCCTCGCTGTGGCTTCCATGACATAGGAGGTTGGTATGTTGAAACATATGGCAAAGATAAGAAGGGTCGTACTATGCCGTCACAAAGGTTCTGGGATGGCTTGGATTATAGCGAGCAAGCTGAAAGAAGACTTCATCCAGCAATGTATCTGTTTGCTCTTGCATATCGAACGCTTGATCTTGAATATGCCAAAACAAGCAAGAAAACATTTAGAAATGCTATTGGAGCACATATGTTCCGAGTTCTTCACTGGTGCAGAAAACTTAAGATTTCCTTGTCCATTTACAACTACACAATGACTCTTTGGACAGATGCTCTGCTAGTACTGAAAGGTAAATTAGAGGCCTCACGTAGTCTTATCTACATGGTTGGAGAAAATTCATCTTTTGATCTTCCTGGTGCTGTGGTCTATTGGCCAAATACTGAACTGAATGTCTCAATCGGTCAAGGACTAGCTTCCGTGCCTTGCCTGGAGATAGTTGCACAACATTGTTGTAAAAAATGCTCTCTGTAG
Protein sequence

>MsG0580024765.01.T01

MTYLSTSIIGINSQKPISSISIITPNTTTVSSRYVVVYAFSTSSESVWTDFPIENAYELLEVSQTSSFDEIKASFSQICERTHPDVAESRNDSTASKRFVQILAAYEILSDARRRAHYDMYLFSQKKLCRSILNRVQNCASTNHRLLHSRRWKLLNAYYGPEIDSIPWSFFLTVLRLKRGPLMKLLRSFHSGLCQSVMDVSTSRNVERPDDFGTQQSRSSKISNNVSDAYRDLELHVKHMHWYHVGEKVSVCECRCTRARLPPSKFWLFEPRCGFHDIGGWYVETYGKDKKGRTMPSQRFWDGLDYSEQAERRLHPAMYLFALAYRTLDLEYAKTSKKTFRNAIGAHMFRVLHWCRKLKISLSIYNYTMTLWTDALLVLKGKLEASRSLIYMVGENSSFDLPGAVVYWPNTELNVSIGQGLASVPCLEIVAQHCCKKCSL*