AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025035.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025035.01.T01 MTR_5g021240 96.970 561 17 0 1 561 1 561 0.0 1130
MsG0580025035.01.T01 MTR_5g021240 98.317 416 7 0 146 561 44 459 0.0 838
MsG0580025035.01.T01 MTR_7g107050 27.376 442 289 11 129 556 150 573 2.69e-38 149
MsG0580025035.01.T01 MTR_7g107050 26.074 349 231 9 129 468 150 480 9.84e-26 110
MsG0580025035.01.T02 MTR_5g021240 74.800 250 16 2 1 250 1 203 1.39e-127 373
MsG0580025035.01.T02 MTR_5g021240 81.250 64 4 1 187 250 46 101 2.71e-24 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025035.01.T01 AT4G36400 74.793 484 121 1 78 561 76 558 0.0 764
MsG0580025035.01.T01 AT4G36400 74.793 484 121 1 78 561 76 558 0.0 764
MsG0580025035.01.T01 AT5G06580 28.118 441 285 12 130 556 140 562 2.89e-37 145
MsG0580025035.01.T02 AT4G36400 47.399 173 44 2 78 250 76 201 5.88e-42 150
MsG0580025035.01.T02 AT4G36400 47.399 173 44 2 78 250 76 201 5.88e-42 150

Find 90 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTTGAAACATCTATTTAT+AGG 0.158839 5:+13064272 MsG0580025035.01.T01:CDS
TATGTCCATAAGTTGTTTAC+AGG 0.247574 5:+13062536 MsG0580025035.01.T01:intron
GAGTGAGGAAGAACTTTATA+TGG 0.268455 5:-13067401 None:intergenic
AATAACCTGTAAACAACTTA+TGG 0.281243 5:-13062541 None:intergenic
ATGGATTCCGAGCACCTTCC+AGG 0.310882 5:-13065749 None:intergenic
TTTGCCTTTCAAGAAGTAAA+TGG 0.322647 5:-13063072 None:intergenic
AGATGGCCAGTCAATGGATT+TGG 0.329144 5:+13065110 MsG0580025035.01.T01:CDS
GGTGATGCGGCTAATGTAAT+TGG 0.332720 5:+13066956 MsG0580025035.01.T01:intron
GGTTTGCGTCTTGTTCGTTA+TGG 0.343417 5:+13063888 MsG0580025035.01.T01:CDS
GTTCGTTATGGATCTCTTCA+TGG 0.345836 5:+13063900 MsG0580025035.01.T01:CDS
AACAGAGCTTAAGGCCTGTT+TGG 0.347602 5:+13062436 MsG0580025035.01.T01:intron
GGAAAATATAATGTCATTCC+TGG 0.363586 5:+13063515 MsG0580025035.01.T01:CDS
AAATCTCGTTAGCTTTCATT+AGG 0.383288 5:-13067208 None:intergenic
GGAATATTGGTATGTGAAGC+TGG 0.399373 5:+13063483 MsG0580025035.01.T01:CDS
AACTGCTACAGGATGCAAAA+AGG 0.402093 5:+13065052 MsG0580025035.01.T01:CDS
TTGAAACATTTCCACCAATC+TGG 0.404253 5:-13063854 None:intergenic
CCGAGCACCTTCCAGGTGAT+TGG 0.406644 5:-13065742 None:intergenic
GGCTTCAATCAAGAATTTGA+TGG 0.409200 5:+13067358 MsG0580025035.01.T01:CDS
CATCAATCACATGTCTGTTA+AGG 0.412050 5:-13067455 None:intergenic
CTTTATATGGGTTGAGTATG+TGG 0.415348 5:-13067388 None:intergenic
CTTAACAGACATGTGATTGA+TGG 0.420452 5:+13067456 MsG0580025035.01.T01:three_prime_UTR
GCGGCTAATGTAATTGGATA+TGG 0.429168 5:+13066962 MsG0580025035.01.T01:CDS
TGTAGGAAGTGAAGGTTCCT+TGG 0.432551 5:+13064364 MsG0580025035.01.T01:intron
ATATATTCAAACAGAGCTTA+AGG 0.433511 5:+13062427 MsG0580025035.01.T01:intron
TCAAATAAGCCAATCCAAAC+AGG 0.434859 5:-13062450 None:intergenic
TTTATTATGCCACTAGACTT+AGG 0.439403 5:+13063816 MsG0580025035.01.T01:CDS
ATCACTTCATAATCTTGATC+AGG 0.439761 5:+13067425 MsG0580025035.01.T01:exon
AAGCTTGAAGCATTTCTACT+TGG 0.440817 5:+13066195 MsG0580025035.01.T01:CDS
TAAGCACTTGAGAGACCGTT+TGG 0.446858 5:+13062488 MsG0580025035.01.T01:intron
TTATGTTGTGAAGTAGCAAA+TGG 0.447003 5:-13065768 None:intergenic
TATGGGTTGAGTATGTGGTT+TGG 0.452257 5:-13067383 None:intergenic
TTCATATTATCTATTGCTGC+AGG 0.453044 5:+13062997 MsG0580025035.01.T01:intron
AGCTTAAGGCCTGTTTGGAT+TGG 0.460697 5:+13062441 MsG0580025035.01.T01:intron
GTTGAAGCTGTTCTAGCAAA+TGG 0.467169 5:+13064200 MsG0580025035.01.T01:CDS
AGCATTTCTACTTGGTTCCA+TGG 0.469134 5:+13066203 MsG0580025035.01.T01:CDS
AATTTGACAGGTGCAAATGA+TGG 0.477944 5:+13067337 MsG0580025035.01.T01:intron
AACCGGCAGTGATGAATCTT+CGG 0.481724 5:+13065812 MsG0580025035.01.T01:CDS
AGACCGTTTGGAAGAGATCA+TGG 0.482858 5:+13062500 MsG0580025035.01.T01:intron
TGTTCCTCAGTACGATGAAA+AGG 0.485328 5:+13067021 MsG0580025035.01.T01:CDS
GCGAAAGGGAGCTGCCAGAT+TGG 0.485812 5:+13063840 MsG0580025035.01.T01:CDS
AAGATTACCCTTCATTGTCC+AGG 0.488062 5:-13063533 None:intergenic
AGTGAGGAAGAACTTTATAT+GGG 0.488421 5:-13067400 None:intergenic
ATGTGAAGCTGGGTGCATAT+TGG 0.490505 5:+13063494 MsG0580025035.01.T01:CDS
TGGGGTAAGTATTGAAACCT+TGG 0.490652 5:-13064396 None:intergenic
TAGACCATTTACTTCTTGAA+AGG 0.494327 5:+13063068 MsG0580025035.01.T01:intron
GACGTCCATTCATATACAAA+AGG 0.505537 5:-13067146 None:intergenic
GTCCGAAGATTCATCACTGC+CGG 0.507107 5:-13065814 None:intergenic
ATGTCATTCCTGGACAATGA+AGG 0.507399 5:+13063525 MsG0580025035.01.T01:CDS
GTAGGAAGTGAAGGTTCCTT+GGG 0.508465 5:+13064365 MsG0580025035.01.T01:intron
TACATACAGTTTCATGCGAC+TGG 0.511618 5:-13067238 None:intergenic
CACTAGACTTAGGTGCGAAA+GGG 0.514830 5:+13063826 MsG0580025035.01.T01:CDS
TTTCCATGATCTCTTCCAAA+CGG 0.520981 5:-13062503 None:intergenic
TCAGAGGCATTGATGAAAGC+AGG 0.528352 5:+13066754 MsG0580025035.01.T01:CDS
ACATTAACTGAAGATAACTT+TGG 0.531526 5:-13064419 None:intergenic
TCTCTTCATGGAAATGTACT+TGG 0.540765 5:+13063912 MsG0580025035.01.T01:CDS
TGCTTATCAGAAACTGCTAC+AGG 0.542738 5:+13065041 MsG0580025035.01.T01:intron
GAAGAAATGCGCTCTAGACT+AGG 0.549437 5:+13066832 MsG0580025035.01.T01:CDS
CCAATCACCTGGAAGGTGCT+CGG 0.550143 5:+13065742 MsG0580025035.01.T01:CDS
CAAAGATTATAGCTGCTGCC+AGG 0.550686 5:+13064457 MsG0580025035.01.T01:CDS
TAACTGAAGATAACTTTGGT+GGG 0.554216 5:-13064415 None:intergenic
GATTATGAAGTGATAGAGTG+AGG 0.554407 5:-13067416 None:intergenic
TTAACTGAAGATAACTTTGG+TGG 0.554767 5:-13064416 None:intergenic
GGATATGGTCACCTTGGAGA+TGG 0.560706 5:+13066977 MsG0580025035.01.T01:CDS
AGATTACCAAATCCATTGAC+TGG 0.561112 5:-13065116 None:intergenic
AACCTTGGTTACAATTCCCA+AGG 0.561997 5:-13064381 None:intergenic
AAAGGGAGCTGCCAGATTGG+TGG 0.562321 5:+13063843 MsG0580025035.01.T01:CDS
GGTCTCTCAAGTGCTTATGC+TGG 0.564501 5:-13062482 None:intergenic
TGTCATTCCTGGACAATGAA+GGG 0.566867 5:+13063526 MsG0580025035.01.T01:CDS
GTAATTGGATATGGTCACCT+TGG 0.567908 5:+13066971 MsG0580025035.01.T01:CDS
TATTAGCGCGGAGCATGGTG+TGG 0.571706 5:+13067184 MsG0580025035.01.T01:CDS
CCACTAGACTTAGGTGCGAA+AGG 0.571834 5:+13063825 MsG0580025035.01.T01:CDS
CTAACAGGTTACCAATCACC+TGG 0.574867 5:+13065731 MsG0580025035.01.T01:intron
TACAACGATGTAGGAAGTGA+AGG 0.577849 5:+13064356 MsG0580025035.01.T01:intron
AACTGAAGATAACTTTGGTG+GGG 0.580026 5:-13064414 None:intergenic
ATAATTTCAGGGTATTTCAG+AGG 0.590797 5:+13066738 MsG0580025035.01.T01:intron
GGAAGTATTAGCGCGGAGCA+TGG 0.596555 5:+13067179 MsG0580025035.01.T01:CDS
AATGCAAATTACCATCTCCA+AGG 0.597473 5:-13066988 None:intergenic
ACGAACAAGACGCAAACCAC+CGG 0.608055 5:-13063883 None:intergenic
CCTTTCGCACCTAAGTCTAG+TGG 0.613316 5:-13063825 None:intergenic
TTCCTTGGGAATTGTAACCA+AGG 0.622248 5:+13064379 MsG0580025035.01.T01:CDS
ATTAGCGCGGAGCATGGTGT+GGG 0.623955 5:+13067185 MsG0580025035.01.T01:CDS
TTTGATTATTGCAGGTGATG+CGG 0.627419 5:+13066943 MsG0580025035.01.T01:intron
GAAAATGAATTGATAGCTGA+TGG 0.633632 5:+13066225 MsG0580025035.01.T01:CDS
CAGGTTACCAATCACCTGGA+AGG 0.645656 5:+13065735 MsG0580025035.01.T01:intron
GAATATTGGTATGTGAAGCT+GGG 0.655099 5:+13063484 MsG0580025035.01.T01:CDS
AATGTTTCAACTAACGCCGG+TGG 0.673544 5:+13063867 MsG0580025035.01.T01:CDS
GAATGGACGTCTAAGAAACG+TGG 0.681061 5:+13067158 MsG0580025035.01.T01:CDS
GGAAATGTTTCAACTAACGC+CGG 0.685617 5:+13063864 MsG0580025035.01.T01:CDS
GAAACGTGGAAGTATTAGCG+CGG 0.732320 5:+13067172 MsG0580025035.01.T01:CDS
ACATTGCGCAAAGATAACAC+TGG 0.737851 5:+13064245 MsG0580025035.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATAATTTTGTACTAAAT+TGG + Chr5:13067512-13067531 MsG0580025035.01.T01:three_prime_UTR 10.0%
!! AAAATTGTTTATTTCAAGAA+TGG + Chr5:13066615-13066634 MsG0580025035.01.T01:intron 15.0%
!! AAGTTTAAATTCAGATTATA+TGG - Chr5:13064021-13064040 None:intergenic 15.0%
!! AATTAATTTAATGTTAAGAG+TGG - Chr5:13065557-13065576 None:intergenic 15.0%
!! ATAAACACTTATCATTTAAA+TGG - Chr5:13062673-13062692 None:intergenic 15.0%
!! ATATAACTAATAACATTCAT+AGG - Chr5:13066865-13066884 None:intergenic 15.0%
!! TATAACTAATAACATTCATA+GGG - Chr5:13066864-13066883 None:intergenic 15.0%
!!! AAAAATTCTTTATATGCTTT+TGG - Chr5:13065340-13065359 None:intergenic 15.0%
!!! AAAAGCATATAAAGAATTTT+TGG + Chr5:13065339-13065358 MsG0580025035.01.T01:intron 15.0%
!!! ACTTTTCATTTAGTTAAATT+TGG - Chr5:13066101-13066120 None:intergenic 15.0%
!!! CATAATTAGATGATTTTTTT+GGG + Chr5:13063608-13063627 MsG0580025035.01.T01:intron 15.0%
!!! CTTTTCATTTAGTTAAATTT+GGG - Chr5:13066100-13066119 None:intergenic 15.0%
!!! GAAGAAAACTTTTAATTATA+TGG + Chr5:13064172-13064191 MsG0580025035.01.T01:intron 15.0%
!!! TAATATAATTTCTTTTGACA+AGG + Chr5:13063045-13063064 MsG0580025035.01.T01:CDS 15.0%
!!! TCATAATTAGATGATTTTTT+TGG + Chr5:13063607-13063626 MsG0580025035.01.T01:intron 15.0%
!!! TGAATTATTTCTATAACAAA+AGG - Chr5:13062643-13062662 None:intergenic 15.0%
!!! TTCATTTACTTATTTTCATA+AGG + Chr5:13066567-13066586 MsG0580025035.01.T01:intron 15.0%
!!! TTTATTTTCAAAAGCTTTAT+AGG + Chr5:13062285-13062304 MsG0580025035.01.T01:intron 15.0%
!!! TTTTCATTTAGTTAAATTTG+GGG - Chr5:13066099-13066118 None:intergenic 15.0%
!! AAGTTATCTGAAAATTTGTA+TGG + Chr5:13064877-13064896 MsG0580025035.01.T01:intron 20.0%
!! AGTTCTTATTGAATAATTTC+AGG + Chr5:13066726-13066745 MsG0580025035.01.T01:intron 20.0%
!! ATAAATCAATCAGCATAAAA+TGG - Chr5:13065854-13065873 None:intergenic 20.0%
!! ATCATTACAATAACATATGT+CGG + Chr5:13065524-13065543 MsG0580025035.01.T01:intron 20.0%
!! ATTCATCAAAAATGCTATTA+TGG + Chr5:13061863-13061882 MsG0580025035.01.T01:CDS 20.0%
!! GTTCTTATTGAATAATTTCA+GGG + Chr5:13066727-13066746 MsG0580025035.01.T01:intron 20.0%
!! TGAAACTGTATGTATATTAT+TGG + Chr5:13067247-13067266 MsG0580025035.01.T01:intron 20.0%
!! TGTTATTAGTTATATCACAT+TGG + Chr5:13066870-13066889 MsG0580025035.01.T01:intron 20.0%
!! TTCTGTATTATTCATTTGAA+CGG + Chr5:13063343-13063362 MsG0580025035.01.T01:intron 20.0%
!! TTTCCAAATTACAATTTAGA+TGG - Chr5:13065932-13065951 None:intergenic 20.0%
!! TTTGTTGCTATCAAATATTT+GGG - Chr5:13065294-13065313 None:intergenic 20.0%
!!! AAAACTTTTAATTATATGGC+AGG + Chr5:13064176-13064195 MsG0580025035.01.T01:intron 20.0%
!!! AAATATTTGATAGCAACAAA+AGG + Chr5:13065294-13065313 MsG0580025035.01.T01:intron 20.0%
!!! AGTAAGAGTTATAATTTTAC+AGG - Chr5:13065626-13065645 None:intergenic 20.0%
!!! ATTCTAAGAAGAAAAAAAAG+GGG - Chr5:13064979-13064998 None:intergenic 20.0%
!!! CATTCTAAGAAGAAAAAAAA+GGG - Chr5:13064980-13064999 None:intergenic 20.0%
!!! CTTGAAATAAACAATTTTGA+CGG - Chr5:13066613-13066632 None:intergenic 20.0%
!!! GATTTGAAACATCTATTTAT+AGG + Chr5:13064272-13064291 MsG0580025035.01.T01:CDS 20.0%
!!! GTTTTAGTAAATATAAGCAA+AGG - Chr5:13067578-13067597 None:intergenic 20.0%
!!! TATAATGACTTTCTATTTTC+AGG + Chr5:13067546-13067565 MsG0580025035.01.T01:three_prime_UTR 20.0%
!!! TCATTCTAAGAAGAAAAAAA+AGG - Chr5:13064981-13065000 None:intergenic 20.0%
!!! TGCTTACATATAAGTAATTT+TGG - Chr5:13062359-13062378 None:intergenic 20.0%
!!! TTAAGTTGTTTATTCAAACA+TGG + Chr5:13062706-13062725 MsG0580025035.01.T01:intron 20.0%
!!! TTGGATAATTGTATTGATAT+AGG + Chr5:13064061-13064080 MsG0580025035.01.T01:intron 20.0%
!!! TTTTGACGAAATTTATTAGT+GGG - Chr5:13061811-13061830 None:intergenic 20.0%
!!! TTTTGTTGCTATCAAATATT+TGG - Chr5:13065295-13065314 None:intergenic 20.0%
!!! TTTTTGACGAAATTTATTAG+TGG - Chr5:13061812-13061831 None:intergenic 20.0%
! AAAATGCTATTATGGTTCAA+TGG + Chr5:13061871-13061890 MsG0580025035.01.T01:CDS 25.0%
! AAAATTCTTCTTTGCTAAGT+AGG - Chr5:13063647-13063666 None:intergenic 25.0%
! AAATGAAAAGTTCTATGCTA+TGG + Chr5:13066110-13066129 MsG0580025035.01.T01:intron 25.0%
! AAATGCTATTATGGTTCAAT+GGG + Chr5:13061872-13061891 MsG0580025035.01.T01:CDS 25.0%
! AACAACAAAATGTTGTGTTA+AGG - Chr5:13063266-13063285 None:intergenic 25.0%
! AATAAACTGTAAACAGCTTA+TGG - Chr5:13062271-13062290 None:intergenic 25.0%
! AATAACCTGTAAACAACTTA+TGG - Chr5:13062544-13062563 None:intergenic 25.0%
! AATACAGAATTGATGCAAAT+TGG - Chr5:13063332-13063351 None:intergenic 25.0%
! AATCATAAAATCCATTGACA+TGG - Chr5:13065981-13066000 None:intergenic 25.0%
! ACATTAACTGAAGATAACTT+TGG - Chr5:13064422-13064441 None:intergenic 25.0%
! ACTGCTTAAAAAATATTGTG+CGG - Chr5:13064815-13064834 None:intergenic 25.0%
! AGTAATAACAGATAATAGGA+GGG + Chr5:13066031-13066050 MsG0580025035.01.T01:intron 25.0%
! AGTTAACAATAATGACAATC+TGG + Chr5:13064300-13064319 MsG0580025035.01.T01:intron 25.0%
! AGTTACAGTATTTAAGAATC+TGG - Chr5:13062800-13062819 None:intergenic 25.0%
! ATATATTCAAACAGAGCTTA+AGG + Chr5:13062427-13062446 MsG0580025035.01.T01:intron 25.0%
! ATTAAGAAAATTCAGAACAG+GGG - Chr5:13065900-13065919 None:intergenic 25.0%
! CAAAATCAATATACCAAAGT+TGG + Chr5:13064042-13064061 MsG0580025035.01.T01:intron 25.0%
! GATCAGTAATAACAGATAAT+AGG + Chr5:13066027-13066046 MsG0580025035.01.T01:intron 25.0%
! GATTAAGAAAATTCAGAACA+GGG - Chr5:13065901-13065920 None:intergenic 25.0%
! GATTTAATTACATGCATATG+TGG - Chr5:13065243-13065262 None:intergenic 25.0%
! GTTACAGTATTTAAGAATCT+GGG - Chr5:13062799-13062818 None:intergenic 25.0%
! TAATTCACATTACGTTTGTA+AGG - Chr5:13065490-13065509 None:intergenic 25.0%
! TATACAAAATTCCAGACAAA+AGG - Chr5:13066504-13066523 None:intergenic 25.0%
! TCAATACAATTATCCAACTT+TGG - Chr5:13064058-13064077 None:intergenic 25.0%
! TCACCATCTAAATTGTAATT+TGG + Chr5:13065926-13065945 MsG0580025035.01.T01:intron 25.0%
! TCTTAAAAGCTATAGATGAT+TGG + Chr5:13063708-13063727 MsG0580025035.01.T01:intron 25.0%
! TGATAAGTGTTTATGCTATA+CGG + Chr5:13062679-13062698 MsG0580025035.01.T01:intron 25.0%
! TGATTAAGAAAATTCAGAAC+AGG - Chr5:13065902-13065921 None:intergenic 25.0%
! TGTAATGATCAGATATAACT+TGG - Chr5:13065513-13065532 None:intergenic 25.0%
! TTAGAACAGTGATTCAATTA+AGG + Chr5:13062158-13062177 MsG0580025035.01.T01:intron 25.0%
! TTAGTGTTGCAAATATTGAT+TGG + Chr5:13062002-13062021 MsG0580025035.01.T01:CDS 25.0%
! TTGCAAGAGAAAGAATTAAA+GGG - Chr5:13062902-13062921 None:intergenic 25.0%
!! AAAACTATTAGACGTTTTGT+AGG + Chr5:13067607-13067626 MsG0580025035.01.T01:three_prime_UTR 25.0%
!! AATTGAATCACTGTTCTAAA+CGG - Chr5:13062157-13062176 None:intergenic 25.0%
!! AGATTGTATAGATTTTCAAC+AGG - Chr5:13066808-13066827 None:intergenic 25.0%
!! ATAGAAAAGTATGTAGATGA+AGG + Chr5:13064757-13064776 MsG0580025035.01.T01:intron 25.0%
!! ATTGGTAGCAAAATAGAAAA+AGG - Chr5:13061544-13061563 None:intergenic 25.0%
!! ATTTTGCTAATTTTATGCCA+AGG + Chr5:13064611-13064630 MsG0580025035.01.T01:intron 25.0%
!! GAAGCTTTATATCAGTTAAT+TGG - Chr5:13061562-13061581 None:intergenic 25.0%
!! TTCTAAGTTGAAATTATGGA+GGG - Chr5:13066074-13066093 None:intergenic 25.0%
!! TTTTCTTCTTAGAATGATAC+AGG + Chr5:13064984-13065003 MsG0580025035.01.T01:intron 25.0%
!! TTTTGCTAATTTTATGCCAA+GGG + Chr5:13064612-13064631 MsG0580025035.01.T01:intron 25.0%
!!! AATTAGATGATTTTTTTGGG+CGG + Chr5:13063611-13063630 MsG0580025035.01.T01:intron 25.0%
!!! ACTTTTTGTTTGATTATTGC+AGG + Chr5:13066935-13066954 MsG0580025035.01.T01:intron 25.0%
!!! AGAGAGTTTTTCTTTGTTTA+AGG + Chr5:13065436-13065455 MsG0580025035.01.T01:intron 25.0%
!!! ATAAACAATTTTGACGGAAA+AGG - Chr5:13066607-13066626 None:intergenic 25.0%
!!! ATGTCAATGGATTTTATGAT+TGG + Chr5:13065980-13065999 MsG0580025035.01.T01:intron 25.0%
!!! ATGTTTTTTATCACCTTACT+AGG + Chr5:13064725-13064744 MsG0580025035.01.T01:intron 25.0%
!!! CAACTTTGGTATATTGATTT+TGG - Chr5:13064044-13064063 None:intergenic 25.0%
!!! GAGAGTTTTTCTTTGTTTAA+GGG + Chr5:13065437-13065456 MsG0580025035.01.T01:intron 25.0%
!!! TCTGCATTTGAATTTTTAGA+TGG + Chr5:13065093-13065112 MsG0580025035.01.T01:CDS 25.0%
!!! TGTCAATGGATTTTATGATT+GGG + Chr5:13065981-13066000 MsG0580025035.01.T01:intron 25.0%
!!! TTCAAGAATGGTTTTTTCAT+TGG + Chr5:13066627-13066646 MsG0580025035.01.T01:intron 25.0%
!!! TTTTATTTTTCCGATTTTGC+AGG + Chr5:13062770-13062789 MsG0580025035.01.T01:intron 25.0%
!!! TTTTTAGGTTAGTGGAATAT+TGG + Chr5:13063470-13063489 MsG0580025035.01.T01:intron 25.0%
AAAAAAAGGGGCAACTATAT+TGG - Chr5:13064967-13064986 None:intergenic 30.0%
AATACACAAAGCATACATCA+AGG - Chr5:13063770-13063789 None:intergenic 30.0%
AATGACAATCTGGAAACTAA+TGG + Chr5:13064310-13064329 MsG0580025035.01.T01:intron 30.0%
ACAATGAATTTCGAAGACAA+CGG - Chr5:13064704-13064723 None:intergenic 30.0%
AGAAGAAGAAGATGATGAAT+CGG + Chr5:13061630-13061649 MsG0580025035.01.T01:intron 30.0%
AGTGAGGAAGAACTTTATAT+GGG - Chr5:13067403-13067422 None:intergenic 30.0%
AGTGTAATTTACCATGTCAA+TGG + Chr5:13065967-13065986 MsG0580025035.01.T01:intron 30.0%
ATCACTTCATAATCTTGATC+AGG + Chr5:13067425-13067444 MsG0580025035.01.T01:exon 30.0%
ATCCAAGAACATGCTTAAAA+AGG - Chr5:13063119-13063138 None:intergenic 30.0%
ATGACAATCTGGAAACTAAT+GGG + Chr5:13064311-13064330 MsG0580025035.01.T01:intron 30.0%
ATTGTTAGAAGAACGTGATT+TGG - Chr5:13061518-13061537 None:intergenic 30.0%
CAACTGTGATCATGTAATTA+AGG + Chr5:13066143-13066162 MsG0580025035.01.T01:intron 30.0%
CACAAGTTTACATTCTCAAA+TGG - Chr5:13067293-13067312 None:intergenic 30.0%
CAGTAATAACAGATAATAGG+AGG + Chr5:13066030-13066049 MsG0580025035.01.T01:intron 30.0%
CTGATTATTGGATATCTAAC+AGG + Chr5:13065716-13065735 MsG0580025035.01.T01:intron 30.0%
GAACTTGTATCAAATTTGAC+AGG + Chr5:13067325-13067344 MsG0580025035.01.T01:intron 30.0%
GATTGGATGCATAAATACAA+AGG + Chr5:13062019-13062038 MsG0580025035.01.T01:CDS 30.0%
GGAAAATATAATGTCATTCC+TGG + Chr5:13063515-13063534 MsG0580025035.01.T01:CDS 30.0%
GTTGCAAGAGAAAGAATTAA+AGG - Chr5:13062903-13062922 None:intergenic 30.0%
TAACTCAAATGAGCAAAGTA+AGG - Chr5:13063738-13063757 None:intergenic 30.0%
TAACTGAAGATAACTTTGGT+GGG - Chr5:13064418-13064437 None:intergenic 30.0%
TAATCTCTATTGATGCTTTG+TGG + Chr5:13065133-13065152 MsG0580025035.01.T01:intron 30.0%
TAGACCATTTACTTCTTGAA+AGG + Chr5:13063068-13063087 MsG0580025035.01.T01:intron 30.0%
TAGTAGAAACAGAAAAGAAG+TGG - Chr5:13064142-13064161 None:intergenic 30.0%
TATGTCCATAAGTTGTTTAC+AGG + Chr5:13062536-13062555 MsG0580025035.01.T01:intron 30.0%
TCTTAACCAGCACTAAATTA+AGG - Chr5:13064592-13064611 None:intergenic 30.0%
TGAAACATGTTACACTCTTT+CGG + Chr5:13062949-13062968 MsG0580025035.01.T01:intron 30.0%
TGATGCAAATTGGTATTACA+AGG - Chr5:13063322-13063341 None:intergenic 30.0%
TTAACTGAAGATAACTTTGG+TGG - Chr5:13064419-13064438 None:intergenic 30.0%
TTATGTTGTGAAGTAGCAAA+TGG - Chr5:13065771-13065790 None:intergenic 30.0%
TTCATATTATCTATTGCTGC+AGG + Chr5:13062997-13063016 MsG0580025035.01.T01:intron 30.0%
TTCATTTGAACGGAATTTGT+TGG + Chr5:13063353-13063372 MsG0580025035.01.T01:intron 30.0%
TTCGTCAAAAATAAGCAACT+GGG + Chr5:13061821-13061840 MsG0580025035.01.T01:CDS 30.0%
TTGAAGTGAATTGAGAAGAT+GGG - Chr5:13061709-13061728 None:intergenic 30.0%
TTTATTATGCCACTAGACTT+AGG + Chr5:13063816-13063835 MsG0580025035.01.T01:CDS 30.0%
TTTCGTCAAAAATAAGCAAC+TGG + Chr5:13061820-13061839 MsG0580025035.01.T01:CDS 30.0%
TTTGCCTTTCAAGAAGTAAA+TGG - Chr5:13063075-13063094 None:intergenic 30.0%
! AACAGTCTACCTAAGTTTTA+CGG - Chr5:13063956-13063975 None:intergenic 30.0%
! AATATATTTTCTTTTCCCCC+CGG + Chr5:13065672-13065691 MsG0580025035.01.T01:intron 30.0%
! ACTTTTATCCCGTAAAACTT+AGG + Chr5:13063944-13063963 MsG0580025035.01.T01:intron 30.0%
! AGCTATCAATTCATTTTCCA+TGG - Chr5:13066223-13066242 None:intergenic 30.0%
! ATAATTTCAGGGTATTTCAG+AGG + Chr5:13066738-13066757 MsG0580025035.01.T01:intron 30.0%
! GAAAAATACCATCCAGATTT+TGG + Chr5:13066696-13066715 MsG0580025035.01.T01:intron 30.0%
! GAAAATGAATTGATAGCTGA+TGG + Chr5:13066225-13066244 MsG0580025035.01.T01:CDS 30.0%
! GAAGAGCATAAAATATTTGC+CGG - Chr5:13066329-13066348 None:intergenic 30.0%
! GGTGTTCTAAGTTGAAATTA+TGG - Chr5:13066078-13066097 None:intergenic 30.0%
! GTTCTAAGTTGAAATTATGG+AGG - Chr5:13066075-13066094 None:intergenic 30.0%
! GTTTTCCTTCAATGTCAATA+TGG + Chr5:13064677-13064696 MsG0580025035.01.T01:intron 30.0%
! TAAACCAAGCATCAACTTTT+TGG + Chr5:13066265-13066284 MsG0580025035.01.T01:CDS 30.0%
! TAATTTTATGCCAAGGGATT+GGG + Chr5:13064618-13064637 MsG0580025035.01.T01:intron 30.0%
! TGATGATGTTAGATACTTTG+AGG + Chr5:13061937-13061956 MsG0580025035.01.T01:CDS 30.0%
! TTAAGCATGTTCTTGGATTT+TGG + Chr5:13063121-13063140 MsG0580025035.01.T01:intron 30.0%
! TTGAGCCTTTTGTATATGAA+TGG + Chr5:13067141-13067160 MsG0580025035.01.T01:CDS 30.0%
! TTGTGTGTCCTTTTATATTC+AGG - Chr5:13064791-13064810 None:intergenic 30.0%
! TTTCAAAAGCTTTATAGGAG+AGG + Chr5:13062290-13062309 MsG0580025035.01.T01:intron 30.0%
! TTTGAAGTGAATTGAGAAGA+TGG - Chr5:13061710-13061729 None:intergenic 30.0%
! TTTTTCATCCTCTTCTTTTC+CGG + Chr5:13066307-13066326 MsG0580025035.01.T01:intron 30.0%
!! AAATCTCGTTAGCTTTCATT+AGG - Chr5:13067211-13067230 None:intergenic 30.0%
!! ACTGATTTTGCACTTTTATG+GGG + Chr5:13064564-13064583 MsG0580025035.01.T01:intron 30.0%
!! AGATACTTTGAGGAGATTTT+GGG + Chr5:13061947-13061966 MsG0580025035.01.T01:CDS 30.0%
!! GACTGATTTTGCACTTTTAT+GGG + Chr5:13064563-13064582 MsG0580025035.01.T01:intron 30.0%
!! TAGATACTTTGAGGAGATTT+TGG + Chr5:13061946-13061965 MsG0580025035.01.T01:CDS 30.0%
!! TCCTTTTATATTCAGGTTCA+CGG - Chr5:13064784-13064803 None:intergenic 30.0%
!! TGACTGATTTTGCACTTTTA+TGG + Chr5:13064562-13064581 MsG0580025035.01.T01:intron 30.0%
!!! TATGTTTTGATTGAGACAAC+CGG + Chr5:13065795-13065814 MsG0580025035.01.T01:CDS 30.0%
AAAAATAAGCAACTGGGTCA+TGG + Chr5:13061827-13061846 MsG0580025035.01.T01:CDS 35.0%
AACCACTAATGTCAACAGTT+AGG - Chr5:13066378-13066397 None:intergenic 35.0%
AACTGAAGATAACTTTGGTG+GGG - Chr5:13064417-13064436 None:intergenic 35.0%
AATATTTGCCGGAAAAGAAG+AGG - Chr5:13066318-13066337 None:intergenic 35.0%
AATGCAAATTACCATCTCCA+AGG - Chr5:13066991-13067010 None:intergenic 35.0%
AATTACACTAACCTCTGCTA+AGG - Chr5:13065956-13065975 None:intergenic 35.0%
AATTTGACAGGTGCAAATGA+TGG + Chr5:13067337-13067356 MsG0580025035.01.T01:intron 35.0%
AATTTGGAAATCCTTAGCAG+AGG + Chr5:13065942-13065961 MsG0580025035.01.T01:intron 35.0%
ACCGTGAACCTGAATATAAA+AGG + Chr5:13064780-13064799 MsG0580025035.01.T01:intron 35.0%
ACTCAACTTTACAACGATGT+AGG + Chr5:13064347-13064366 MsG0580025035.01.T01:intron 35.0%
AGATTACCAAATCCATTGAC+TGG - Chr5:13065119-13065138 None:intergenic 35.0%
AGTCATGCTGATCTGATTAT+TGG + Chr5:13065704-13065723 MsG0580025035.01.T01:intron 35.0%
ATTAGAACACTTATCGTACC+TGG - Chr5:13064478-13064497 None:intergenic 35.0%
CAAAATGTTGTGTTAAGGTG+AGG - Chr5:13063261-13063280 None:intergenic 35.0%
CAACATTGCGCTTTAATTGT+TGG - Chr5:13061754-13061773 None:intergenic 35.0%
CAAGAACATGCTTAAAAAGG+AGG - Chr5:13063116-13063135 None:intergenic 35.0%
CATCAATCACATGTCTGTTA+AGG - Chr5:13067458-13067477 None:intergenic 35.0%
CATGATCACAGTTGACATTA+AGG - Chr5:13066137-13066156 None:intergenic 35.0%
CTAGACTTTAGCTAGTTGTA+AGG + Chr5:13064089-13064108 MsG0580025035.01.T01:intron 35.0%
CTATGCCTATATCAAAGCAT+TGG - Chr5:13065365-13065384 None:intergenic 35.0%
CTGTTATTACTGATCAAACC+CGG - Chr5:13066022-13066041 None:intergenic 35.0%
CTTAACAGACATGTGATTGA+TGG + Chr5:13067456-13067475 MsG0580025035.01.T01:three_prime_UTR 35.0%
GAAAGCTGTTAGTGTACAAT+AGG - Chr5:13062980-13062999 None:intergenic 35.0%
GAACTGATATAGCCAAAATC+TGG - Chr5:13066711-13066730 None:intergenic 35.0%
GAATATTGGTATGTGAAGCT+GGG + Chr5:13063484-13063503 MsG0580025035.01.T01:CDS 35.0%
GACAGACAGAGTTTATTTAC+TGG + Chr5:13062190-13062209 MsG0580025035.01.T01:intron 35.0%
GACGTCCATTCATATACAAA+AGG - Chr5:13067149-13067168 None:intergenic 35.0%
GAGTGAGGAAGAACTTTATA+TGG - Chr5:13067404-13067423 None:intergenic 35.0%
GATTATGAAGTGATAGAGTG+AGG - Chr5:13067419-13067438 None:intergenic 35.0%
GATTCAATTAAGGACCTGTT+TGG + Chr5:13062168-13062187 MsG0580025035.01.T01:intron 35.0%
GGCTTCAATCAAGAATTTGA+TGG + Chr5:13067358-13067377 MsG0580025035.01.T01:CDS 35.0%
GGGGAAGAAAAATGTTATAC+AGG + Chr5:13061967-13061986 MsG0580025035.01.T01:CDS 35.0%
GTGCTAAGAAATAGAGCATA+TGG + Chr5:13063157-13063176 MsG0580025035.01.T01:intron 35.0%
GTGGTTTCATTTATCTGACA+TGG + Chr5:13066392-13066411 MsG0580025035.01.T01:intron 35.0%
TCAAATAAGCCAATCCAAAC+AGG - Chr5:13062453-13062472 None:intergenic 35.0%
TCAATCAGCATAAAATGGCA+AGG - Chr5:13065849-13065868 None:intergenic 35.0%
TCTCTTCATGGAAATGTACT+TGG + Chr5:13063912-13063931 MsG0580025035.01.T01:CDS 35.0%
TGATATAGCCAAAATCTGGA+TGG - Chr5:13066707-13066726 None:intergenic 35.0%
TGGCCTAAGTATTTGAAAAG+CGG + Chr5:13062726-13062745 MsG0580025035.01.T01:intron 35.0%
TTGAAACATTTCCACCAATC+TGG - Chr5:13063857-13063876 None:intergenic 35.0%
TTGAAAGCTTGATTCTCCTT+AGG - Chr5:13061779-13061798 None:intergenic 35.0%
TTTCATAAGCTATGCTATCC+TGG - Chr5:13062579-13062598 None:intergenic 35.0%
TTTCCATGATCTCTTCCAAA+CGG - Chr5:13062506-13062525 None:intergenic 35.0%
TTTGATTATTGCAGGTGATG+CGG + Chr5:13066943-13066962 MsG0580025035.01.T01:intron 35.0%
TTTGGCCAATGCTTTGATAT+AGG + Chr5:13065357-13065376 MsG0580025035.01.T01:intron 35.0%
! AAATGCTTCAAGCTTTTGTC+TGG - Chr5:13066190-13066209 None:intergenic 35.0%
! AAGCTTGAAGCATTTCTACT+TGG + Chr5:13066195-13066214 MsG0580025035.01.T01:CDS 35.0%
! ACAGTCTACCTAAGTTTTAC+GGG - Chr5:13063955-13063974 None:intergenic 35.0%
! ATCATTCAACTCTGAGAATC+TGG - Chr5:13061918-13061937 None:intergenic 35.0%
! CTAATTTTATGCCAAGGGAT+TGG + Chr5:13064617-13064636 MsG0580025035.01.T01:intron 35.0%
! CTTTATATGGGTTGAGTATG+TGG - Chr5:13067391-13067410 None:intergenic 35.0%
! TCAGTTATAGACCTTTTGTC+TGG + Chr5:13066490-13066509 MsG0580025035.01.T01:intron 35.0%
! TCATTCAACTCTGAGAATCT+GGG - Chr5:13061917-13061936 None:intergenic 35.0%
! TGGGTAGAATAATGTTTTGC+CGG + Chr5:13066000-13066019 MsG0580025035.01.T01:intron 35.0%
!! ATTTTTAGATGGCCAGTCAA+TGG + Chr5:13065104-13065123 MsG0580025035.01.T01:CDS 35.0%
!! CTCCTTTTTAAGCATGTTCT+TGG + Chr5:13063114-13063133 MsG0580025035.01.T01:intron 35.0%
!! GATACTTTGAGGAGATTTTG+GGG + Chr5:13061948-13061967 MsG0580025035.01.T01:CDS 35.0%
!! GTTATTTTCATAAGCTCTCC+AGG + Chr5:13062558-13062577 MsG0580025035.01.T01:intron 35.0%
!!! AAGCCGCTTTTCAAATACTT+AGG - Chr5:13062732-13062751 None:intergenic 35.0%
AAAGCGCAATGTTGTTCCTA+AGG + Chr5:13061760-13061779 MsG0580025035.01.T01:CDS 40.0%
AAATAGAGCATATGGCTGAG+AGG + Chr5:13063165-13063184 MsG0580025035.01.T01:intron 40.0%
AACCTTGGTTACAATTCCCA+AGG - Chr5:13064384-13064403 None:intergenic 40.0%
AACTGCTACAGGATGCAAAA+AGG + Chr5:13065052-13065071 MsG0580025035.01.T01:CDS 40.0%
AAGATTACCCTTCATTGTCC+AGG - Chr5:13063536-13063555 None:intergenic 40.0%
ACATTGCGCAAAGATAACAC+TGG + Chr5:13064245-13064264 MsG0580025035.01.T01:CDS 40.0%
ACGGTCCATATTGACATTGA+AGG - Chr5:13064685-13064704 None:intergenic 40.0%
AGCATTTCTACTTGGTTCCA+TGG + Chr5:13066203-13066222 MsG0580025035.01.T01:CDS 40.0%
AGGATGCAAAAAGGAAGCTT+GGG + Chr5:13065061-13065080 MsG0580025035.01.T01:CDS 40.0%
ATACTGTAACTCCAGATGCT+TGG + Chr5:13062809-13062828 MsG0580025035.01.T01:CDS 40.0%
ATAGGGATACTCGTGAATTG+TGG - Chr5:13063226-13063245 None:intergenic 40.0%
ATCTGGGAAACCTGCAAAAT+CGG - Chr5:13062783-13062802 None:intergenic 40.0%
ATGTCATTCCTGGACAATGA+AGG + Chr5:13063525-13063544 MsG0580025035.01.T01:CDS 40.0%
CCACTAACCTAAAAAGCCAT+TGG - Chr5:13063465-13063484 None:intergenic 40.0%
CGTAGCAAAATCAAGCTCAA+AGG + Chr5:13061588-13061607 MsG0580025035.01.T01:five_prime_UTR 40.0%
CTAATGTCAACAGTTAGGCA+TGG - Chr5:13066373-13066392 None:intergenic 40.0%
CTACAGCACAAGCACTTTAA+GGG - Chr5:13066539-13066558 None:intergenic 40.0%
CTATGTGTCTACACCTAGTA+AGG - Chr5:13064741-13064760 None:intergenic 40.0%
GCGGCTAATGTAATTGGATA+TGG + Chr5:13066962-13066981 MsG0580025035.01.T01:CDS 40.0%
GGAAATGTTTCAACTAACGC+CGG + Chr5:13063864-13063883 MsG0580025035.01.T01:CDS 40.0%
GGAATATTGGTATGTGAAGC+TGG + Chr5:13063483-13063502 MsG0580025035.01.T01:CDS 40.0%
GGGTATACTTCATCAAAGAC+AGG - Chr5:13062882-13062901 None:intergenic 40.0%
GGTCTATAACTGACCTTGAT+TGG - Chr5:13066483-13066502 None:intergenic 40.0%
GTAATTGGATATGGTCACCT+TGG + Chr5:13066971-13066990 MsG0580025035.01.T01:CDS 40.0%
GTGGAGTTGAGTTTGATCTA+CGG + Chr5:13065395-13065414 MsG0580025035.01.T01:intron 40.0%
GTGGATCAAAGATGTCACTA+AGG - Chr5:13064123-13064142 None:intergenic 40.0%
GTTCGTTATGGATCTCTTCA+TGG + Chr5:13063900-13063919 MsG0580025035.01.T01:CDS 40.0%
GTTGAAGCTGTTCTAGCAAA+TGG + Chr5:13064200-13064219 MsG0580025035.01.T01:CDS 40.0%
TAAACTCTGTCTGTCCAAAC+AGG - Chr5:13062185-13062204 None:intergenic 40.0%
TACAACGATGTAGGAAGTGA+AGG + Chr5:13064356-13064375 MsG0580025035.01.T01:intron 40.0%
TACATACAGTTTCATGCGAC+TGG - Chr5:13067241-13067260 None:intergenic 40.0%
TAGGCATAGTAACATGTCTG+TGG + Chr5:13065376-13065395 MsG0580025035.01.T01:intron 40.0%
TCAACATGCTTGACCAATCA+AGG + Chr5:13066467-13066486 MsG0580025035.01.T01:intron 40.0%
TCTACAGCACAAGCACTTTA+AGG - Chr5:13066540-13066559 None:intergenic 40.0%
TGCCTAACTGTTGACATTAG+TGG + Chr5:13066373-13066392 MsG0580025035.01.T01:intron 40.0%
TGCTATTATGGTTCAATGGG+TGG + Chr5:13061875-13061894 MsG0580025035.01.T01:CDS 40.0%
TGCTTATCAGAAACTGCTAC+AGG + Chr5:13065041-13065060 MsG0580025035.01.T01:intron 40.0%
TGTCATTCCTGGACAATGAA+GGG + Chr5:13063526-13063545 MsG0580025035.01.T01:CDS 40.0%
TGTTCCTCAGTACGATGAAA+AGG + Chr5:13067021-13067040 MsG0580025035.01.T01:CDS 40.0%
TTCCTTGGGAATTGTAACCA+AGG + Chr5:13064379-13064398 MsG0580025035.01.T01:CDS 40.0%
! AGATTCGCCAATGGCTTTTT+AGG + Chr5:13063455-13063474 MsG0580025035.01.T01:intron 40.0%
! CATTCAACTCTGAGAATCTG+GGG - Chr5:13061916-13061935 None:intergenic 40.0%
! GCTTGATTTTGCTACGAGTT+TGG - Chr5:13061584-13061603 None:intergenic 40.0%
! GGGTAGAATAATGTTTTGCC+GGG + Chr5:13066001-13066020 MsG0580025035.01.T01:intron 40.0%
! TATGGGTTGAGTATGTGGTT+TGG - Chr5:13067386-13067405 None:intergenic 40.0%
!! AGTTCTGAAAGATTCGCCAA+TGG + Chr5:13063446-13063465 MsG0580025035.01.T01:intron 40.0%
!! ATTGAGAAGATGGGTTGTGT+TGG - Chr5:13061700-13061719 None:intergenic 40.0%
!! TGGGGTAAGTATTGAAACCT+TGG - Chr5:13064399-13064418 None:intergenic 40.0%
!!! CCAATGGCTTTTTAGGTTAG+TGG + Chr5:13063462-13063481 MsG0580025035.01.T01:intron 40.0%
AACAGAGCTTAAGGCCTGTT+TGG + Chr5:13062436-13062455 MsG0580025035.01.T01:intron 45.0%
AACCGGCAGTGATGAATCTT+CGG + Chr5:13065812-13065831 MsG0580025035.01.T01:CDS 45.0%
AATGTTTCAACTAACGCCGG+TGG + Chr5:13063867-13063886 MsG0580025035.01.T01:CDS 45.0%
ACAACCATGCAACACTGATC+AGG + Chr5:13062060-13062079 MsG0580025035.01.T01:CDS 45.0%
AGAACCTGATCAGTGTTGCA+TGG - Chr5:13062067-13062086 None:intergenic 45.0%
AGACCGTTTGGAAGAGATCA+TGG + Chr5:13062500-13062519 MsG0580025035.01.T01:intron 45.0%
AGCTTAAGGCCTGTTTGGAT+TGG + Chr5:13062441-13062460 MsG0580025035.01.T01:intron 45.0%
ATGAAGCACATGCACGCAAA+TGG - Chr5:13061465-13061484 None:intergenic 45.0%
ATGTGAAGCTGGGTGCATAT+TGG + Chr5:13063494-13063513 MsG0580025035.01.T01:CDS 45.0%
CAAAGATTATAGCTGCTGCC+AGG + Chr5:13064457-13064476 MsG0580025035.01.T01:CDS 45.0%
CACTAGACTTAGGTGCGAAA+GGG + Chr5:13063826-13063845 MsG0580025035.01.T01:CDS 45.0%
CAGGATGCAAAAAGGAAGCT+TGG + Chr5:13065060-13065079 MsG0580025035.01.T01:CDS 45.0%
CTAACAGGTTACCAATCACC+TGG + Chr5:13065731-13065750 MsG0580025035.01.T01:intron 45.0%
CTGGGTCATGGAATTTCTTG+CGG + Chr5:13061839-13061858 MsG0580025035.01.T01:CDS 45.0%
GAATGGACGTCTAAGAAACG+TGG + Chr5:13067158-13067177 MsG0580025035.01.T01:CDS 45.0%
GGATGCAAAAAGGAAGCTTG+GGG + Chr5:13065062-13065081 MsG0580025035.01.T01:CDS 45.0%
GGTGATGCGGCTAATGTAAT+TGG + Chr5:13066956-13066975 MsG0580025035.01.T01:intron 45.0%
GTAGGAAGTGAAGGTTCCTT+GGG + Chr5:13064365-13064384 MsG0580025035.01.T01:intron 45.0%
TAAGCACTTGAGAGACCGTT+TGG + Chr5:13062488-13062507 MsG0580025035.01.T01:intron 45.0%
TATAGTGCTTCCCAATCCCT+TGG - Chr5:13064631-13064650 None:intergenic 45.0%
TGAGGTGTGTGAGTTGCATA+GGG - Chr5:13063243-13063262 None:intergenic 45.0%
TGTAGGAAGTGAAGGTTCCT+TGG + Chr5:13064364-13064383 MsG0580025035.01.T01:intron 45.0%
! AGATGGCCAGTCAATGGATT+TGG + Chr5:13065110-13065129 MsG0580025035.01.T01:CDS 45.0%
! AGCACAAGCACTTTAAGGGA+GGG - Chr5:13066535-13066554 None:intergenic 45.0%
! GAAGAAATGCGCTCTAGACT+AGG + Chr5:13066832-13066851 MsG0580025035.01.T01:CDS 45.0%
! GCTACCTTTTCATCGTACTG+AGG - Chr5:13067028-13067047 None:intergenic 45.0%
! GGTTTGCGTCTTGTTCGTTA+TGG + Chr5:13063888-13063907 MsG0580025035.01.T01:CDS 45.0%
! TATTTTCTTTTCCCCCCGGT+CGG + Chr5:13065676-13065695 MsG0580025035.01.T01:intron 45.0%
!! AACTTTTTGGCGTCTACGTG+AGG + Chr5:13066278-13066297 MsG0580025035.01.T01:CDS 45.0%
!! ATGGGTTGTGTTGGTGATGA+TGG - Chr5:13061691-13061710 None:intergenic 45.0%
!! GAAACGTGGAAGTATTAGCG+CGG + Chr5:13067172-13067191 MsG0580025035.01.T01:CDS 45.0%
!! GACGCCAAAAAGTTGATGCT+TGG - Chr5:13066272-13066291 None:intergenic 45.0%
!! GGTGATGATGGAAACGTGTA+AGG - Chr5:13061679-13061698 None:intergenic 45.0%
!! TCAGAGGCATTGATGAAAGC+AGG + Chr5:13066754-13066773 MsG0580025035.01.T01:CDS 45.0%
!! AAAATTACAAAAAAAAAAAA+TGG - Chr5:13063575-13063594 None:intergenic 5.0%
ACGAACAAGACGCAAACCAC+CGG - Chr5:13063886-13063905 None:intergenic 50.0%
AGACCAGTGTTTCCACCTTG+AGG - Chr5:13062843-13062862 None:intergenic 50.0%
AGCATGACTATGATCCGACC+GGG - Chr5:13065693-13065712 None:intergenic 50.0%
AGGAACAACAGCCAAGCATC+TGG - Chr5:13062823-13062842 None:intergenic 50.0%
CAGCATGACTATGATCCGAC+CGG - Chr5:13065694-13065713 None:intergenic 50.0%
CAGGTTACCAATCACCTGGA+AGG + Chr5:13065735-13065754 MsG0580025035.01.T01:intron 50.0%
CCACTAGACTTAGGTGCGAA+AGG + Chr5:13063825-13063844 MsG0580025035.01.T01:CDS 50.0%
CCTTTCGCACCTAAGTCTAG+TGG - Chr5:13063828-13063847 None:intergenic 50.0%
GGATATGGTCACCTTGGAGA+TGG + Chr5:13066977-13066996 MsG0580025035.01.T01:CDS 50.0%
GGTCTCTCAAGTGCTTATGC+TGG - Chr5:13062485-13062504 None:intergenic 50.0%
GTCAACAGTTAGGCATGGCA+GGG - Chr5:13066368-13066387 None:intergenic 50.0%
GTCCGAAGATTCATCACTGC+CGG - Chr5:13065817-13065836 None:intergenic 50.0%
GTGAGGTGTGTGAGTTGCAT+AGG - Chr5:13063244-13063263 None:intergenic 50.0%
GTTCCTCAAGGTGGAAACAC+TGG + Chr5:13062837-13062856 MsG0580025035.01.T01:CDS 50.0%
TGCTTGGCTGTTGTTCCTCA+AGG + Chr5:13062825-13062844 MsG0580025035.01.T01:CDS 50.0%
TGTCAACAGTTAGGCATGGC+AGG - Chr5:13066369-13066388 None:intergenic 50.0%
TTGGCTGTTGTTCCTCAAGG+TGG + Chr5:13062828-13062847 MsG0580025035.01.T01:CDS 50.0%
! CAGCACAAGCACTTTAAGGG+AGG - Chr5:13066536-13066555 None:intergenic 50.0%
! GCACAAGCACTTTAAGGGAG+GGG - Chr5:13066534-13066553 None:intergenic 50.0%
! GGGGCACCTTAATTTAGTGC+TGG + Chr5:13064583-13064602 MsG0580025035.01.T01:intron 50.0%
!! GGAAACACTGGTCTTGTAGG+TGG + Chr5:13062849-13062868 MsG0580025035.01.T01:CDS 50.0%
!! GGTGGAAACACTGGTCTTGT+AGG + Chr5:13062846-13062865 MsG0580025035.01.T01:CDS 50.0%
AAAGGGAGCTGCCAGATTGG+TGG + Chr5:13063843-13063862 MsG0580025035.01.T01:CDS 55.0%
ATGACTATGATCCGACCGGG+GGG - Chr5:13065690-13065709 None:intergenic 55.0%
ATGGATTCCGAGCACCTTCC+AGG - Chr5:13065752-13065771 None:intergenic 55.0%
ATTAGCGCGGAGCATGGTGT+GGG + Chr5:13067185-13067204 MsG0580025035.01.T01:CDS 55.0%
CATGACTATGATCCGACCGG+GGG - Chr5:13065691-13065710 None:intergenic 55.0%
GCATGACTATGATCCGACCG+GGG - Chr5:13065692-13065711 None:intergenic 55.0%
TATTAGCGCGGAGCATGGTG+TGG + Chr5:13067184-13067203 MsG0580025035.01.T01:CDS 55.0%
!! CCAATCACCTGGAAGGTGCT+CGG + Chr5:13065742-13065761 MsG0580025035.01.T01:CDS 55.0%
!! GGAAGTATTAGCGCGGAGCA+TGG + Chr5:13067179-13067198 MsG0580025035.01.T01:CDS 55.0%
CCGAGCACCTTCCAGGTGAT+TGG - Chr5:13065745-13065764 None:intergenic 60.0%
GCGAAAGGGAGCTGCCAGAT+TGG + Chr5:13063840-13063859 MsG0580025035.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 13061426 13067626 13061426 ID=MsG0580025035.01;Name=MsG0580025035.01
Chr5 mRNA 13061426 13067626 13061426 ID=MsG0580025035.01.T01;Parent=MsG0580025035.01;Name=MsG0580025035.01.T01;_AED=0.38;_eAED=0.38;_QI=215|1|1|1|0.76|0.92|14|190|561
Chr5 exon 13063019 13063066 13063019 ID=MsG0580025035.01.T01:exon:5370;Parent=MsG0580025035.01.T01
Chr5 exon 13063477 13063547 13063477 ID=MsG0580025035.01.T01:exon:5371;Parent=MsG0580025035.01.T01
Chr5 exon 13063815 13063933 13063815 ID=MsG0580025035.01.T01:exon:5372;Parent=MsG0580025035.01.T01
Chr5 exon 13064198 13064293 13064198 ID=MsG0580025035.01.T01:exon:5373;Parent=MsG0580025035.01.T01
Chr5 exon 13064369 13064478 13064369 ID=MsG0580025035.01.T01:exon:5374;Parent=MsG0580025035.01.T01
Chr5 exon 13065051 13065131 13065051 ID=MsG0580025035.01.T01:exon:5375;Parent=MsG0580025035.01.T01
Chr5 exon 13065738 13065838 13065738 ID=MsG0580025035.01.T01:exon:5376;Parent=MsG0580025035.01.T01
Chr5 exon 13066191 13066299 13066191 ID=MsG0580025035.01.T01:exon:5377;Parent=MsG0580025035.01.T01
Chr5 exon 13066748 13066853 13066748 ID=MsG0580025035.01.T01:exon:5378;Parent=MsG0580025035.01.T01
Chr5 exon 13066957 13067042 13066957 ID=MsG0580025035.01.T01:exon:5379;Parent=MsG0580025035.01.T01
Chr5 exon 13067128 13067253 13067128 ID=MsG0580025035.01.T01:exon:5380;Parent=MsG0580025035.01.T01
Chr5 exon 13067347 13067626 13067347 ID=MsG0580025035.01.T01:exon:5381;Parent=MsG0580025035.01.T01
Chr5 five_prime_UTR 13061426 13061640 13061426 ID=MsG0580025035.01.T01:five_prime_utr;Parent=MsG0580025035.01.T01
Chr5 CDS 13061641 13062081 13061641 ID=MsG0580025035.01.T01:cds;Parent=MsG0580025035.01.T01
Chr5 CDS 13062792 13062893 13062792 ID=MsG0580025035.01.T01:cds;Parent=MsG0580025035.01.T01
Chr5 CDS 13063019 13063066 13063019 ID=MsG0580025035.01.T01:cds;Parent=MsG0580025035.01.T01
Chr5 CDS 13063477 13063547 13063477 ID=MsG0580025035.01.T01:cds;Parent=MsG0580025035.01.T01
Chr5 CDS 13063815 13063933 13063815 ID=MsG0580025035.01.T01:cds;Parent=MsG0580025035.01.T01
Chr5 CDS 13064198 13064293 13064198 ID=MsG0580025035.01.T01:cds;Parent=MsG0580025035.01.T01
Chr5 CDS 13064369 13064478 13064369 ID=MsG0580025035.01.T01:cds;Parent=MsG0580025035.01.T01
Chr5 CDS 13065051 13065131 13065051 ID=MsG0580025035.01.T01:cds;Parent=MsG0580025035.01.T01
Chr5 CDS 13065738 13065838 13065738 ID=MsG0580025035.01.T01:cds;Parent=MsG0580025035.01.T01
Chr5 CDS 13066191 13066299 13066191 ID=MsG0580025035.01.T01:cds;Parent=MsG0580025035.01.T01
Chr5 CDS 13066748 13066853 13066748 ID=MsG0580025035.01.T01:cds;Parent=MsG0580025035.01.T01
Chr5 CDS 13066957 13067042 13066957 ID=MsG0580025035.01.T01:cds;Parent=MsG0580025035.01.T01
Chr5 CDS 13067128 13067253 13067128 ID=MsG0580025035.01.T01:cds;Parent=MsG0580025035.01.T01
Chr5 CDS 13067347 13067436 13067347 ID=MsG0580025035.01.T01:cds;Parent=MsG0580025035.01.T01
Chr5 three_prime_UTR 13067437 13067626 13067437 ID=MsG0580025035.01.T01:three_prime_utr;Parent=MsG0580025035.01.T01
Chr5 mRNA 13061426 13063111 13061426 ID=MsG0580025035.01.T02;Parent=MsG0580025035.01;Name=MsG0580025035.01.T02;_AED=0.44;_eAED=0.54;_QI=215|0|0.5|1|0.66|0.75|4|0|258
Chr5 exon 13062441 13062557 13062441 ID=MsG0580025035.01.T02:exon:5382;Parent=MsG0580025035.01.T02
Chr5 exon 13062995 13063111 13062995 ID=MsG0580025035.01.T02:exon:5383;Parent=MsG0580025035.01.T02
Chr5 five_prime_UTR 13061426 13061640 13061426 ID=MsG0580025035.01.T02:five_prime_utr;Parent=MsG0580025035.01.T02
Chr5 CDS 13061641 13062081 13061641 ID=MsG0580025035.01.T02:cds;Parent=MsG0580025035.01.T02
Chr5 CDS 13062441 13062557 13062441 ID=MsG0580025035.01.T02:cds;Parent=MsG0580025035.01.T02
Chr5 CDS 13062792 13062893 13062792 ID=MsG0580025035.01.T02:cds;Parent=MsG0580025035.01.T02
Chr5 CDS 13062995 13063111 13062995 ID=MsG0580025035.01.T02:cds;Parent=MsG0580025035.01.T02
Gene Sequence

>MsG0580025035.01.T01

ATGATGAATCGGAATAGCAGAAACACACTTCGCTTCCTTACACGTTTCCATCATCACCAACACAACCCATCTTCTCAATTCACTTCAAAAACACTTTTTGATGAAAATTGCCAACAATTAAAGCGCAATGTTGTTCCTAAGGAGAATCAAGCTTTCAACTTTTTCAACCCACTAATAAATTTCGTCAAAAATAAGCAACTGGGTCATGGAATTTCTTGCGGAATTCATCAAAAATGCTATTATGGTTCAATGGGTGGTGTTGTTCAAAGAAGCCCCAGATTCTCAGAGTTGAATGATGATGATGTTAGATACTTTGAGGAGATTTTGGGGAAGAAAAATGTTATACAGGACGAAGATAAGCTTAGTGTTGCAAATATTGATTGGATGCATAAATACAAAGGTTCAAGCAAACTCATTCTACAACCATGCAACACTGATCAGGTTTCCCAGATTCTTAAATACTGTAACTCCAGATGCTTGGCTGTTGTTCCTCAAGGTGGAAACACTGGTCTTGTAGGTGGAAGTGTACCTGTCTTTGATGAAGTGATTGTTAGTCTTAGTTCAATGAATAATATAATTTCTTTTGACAAGGTTAGTGGAATATTGGTATGTGAAGCTGGGTGCATATTGGAAAATATAATGTCATTCCTGGACAATGAAGGATTTATTATGCCACTAGACTTAGGTGCGAAAGGGAGCTGCCAGATTGGTGGAAATGTTTCAACTAACGCCGGTGGTTTGCGTCTTGTTCGTTATGGATCTCTTCATGGAAATGTACTTGGTGTTGAAGCTGTTCTAGCAAATGGCACTGTACTTGACATGCTTAAGACATTGCGCAAAGATAACACTGGCTATGATTTGAAACATCTATTTATAGGAAGTGAAGGTTCCTTGGGAATTGTAACCAAGGTTTCAATACTTACCCCACCAAAGTTATCTTCAGTTAATGTTGCTCTTCTTGCTTGCAAAGATTATAGCTGCTGCCAGAAACTGCTACAGGATGCAAAAAGGAAGCTTGGGGAGATTTTATCTGCATTTGAATTTTTAGATGGCCAGTCAATGGATTTGGTTACCAATCACCTGGAAGGTGCTCGGAATCCATTTGCTACTTCACAACATAACTTTTATGTTTTGATTGAGACAACCGGCAGTGATGAATCTTCGGACAAACAAAAGCTTGAAGCATTTCTACTTGGTTCCATGGAAAATGAATTGATAGCTGATGGTGTTCTTGCGCAAGACATAAACCAAGCATCAACTTTTTGGCGTCTACGTGAGGGTATTTCAGAGGCATTGATGAAAGCAGGAGCTGTTTACAAGTATGATGTATCGATACCTGTTGAAAATCTATACAATCTTGTTGAAGAAATGCGCTCTAGACTAGGTGATGCGGCTAATGTAATTGGATATGGTCACCTTGGAGATGGTAATTTGCATTTAAACGTTTCTGTTCCTCAGTACGATGAAAAGATTTTATCACAAATTGAGCCTTTTGTATATGAATGGACGTCTAAGAAACGTGGAAGTATTAGCGCGGAGCATGGTGTGGGCCTAATGAAAGCTAACGAGATTTTCTACAGCCAGTCGCATGAAACTGTGCAAATGATGGCTTCAATCAAGAATTTGATGGATCCAAACCACATACTCAACCCATATAAAGTTCTTCCTCACTCTATCACTTCATAA

>MsG0580025035.01.T02

ATGATGAATCGGAATAGCAGAAACACACTTCGCTTCCTTACACGTTTCCATCATCACCAACACAACCCATCTTCTCAATTCACTTCAAAAACACTTTTTGATGAAAATTGCCAACAATTAAAGCGCAATGTTGTTCCTAAGGAGAATCAAGCTTTCAACTTTTTCAACCCACTAATAAATTTCGTCAAAAATAAGCAACTGGGTCATGGAATTTCTTGCGGAATTCATCAAAAATGCTATTATGGTTCAATGGGTGGTGTTGTTCAAAGAAGCCCCAGATTCTCAGAGTTGAATGATGATGATGTTAGATACTTTGAGGAGATTTTGGGGAAGAAAAATGTTATACAGGACGAAGATAAGCTTAGTGTTGCAAATATTGATTGGATGCATAAATACAAAGGTTCAAGCAAACTCATTCTACAACCATGCAACACTGATCAGAGCTTAAGGCCTGTTTGGATTGGCTTATTTGAACTTATCTTCCAGCATAAGCACTTGAGAGACCGTTTGGAAGAGATCATGGAAACAGCTTATGATATGTCCATAAGTTGTTTACAGGTTTCCCAGATTCTTAAATACTGTAACTCCAGATGCTTGGCTGTTGTTCCTCAAGGTGGAAACACTGGTCTTGTAGGTGGAAGTGTACCTGTCTTTGATGAACTTTCATATTATCTATTGCTGCAGGTGATTGTTAGTCTTAGTTCAATGAATAATATAATTTCTTTTGACAAGGTAGACCATTTACTTCTTGAAAGGCAAAAAATTTATGCTTTATGA
Protein sequence

>MsG0580025035.01.T01

MMNRNSRNTLRFLTRFHHHQHNPSSQFTSKTLFDENCQQLKRNVVPKENQAFNFFNPLINFVKNKQLGHGISCGIHQKCYYGSMGGVVQRSPRFSELNDDDVRYFEEILGKKNVIQDEDKLSVANIDWMHKYKGSSKLILQPCNTDQVSQILKYCNSRCLAVVPQGGNTGLVGGSVPVFDEVIVSLSSMNNIISFDKVSGILVCEAGCILENIMSFLDNEGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGVEAVLANGTVLDMLKTLRKDNTGYDLKHLFIGSEGSLGIVTKVSILTPPKLSSVNVALLACKDYSCCQKLLQDAKRKLGEILSAFEFLDGQSMDLVTNHLEGARNPFATSQHNFYVLIETTGSDESSDKQKLEAFLLGSMENELIADGVLAQDINQASTFWRLREGISEALMKAGAVYKYDVSIPVENLYNLVEEMRSRLGDAANVIGYGHLGDGNLHLNVSVPQYDEKILSQIEPFVYEWTSKKRGSISAEHGVGLMKANEIFYSQSHETVQMMASIKNLMDPNHILNPYKVLPHSITS*

>MsG0580025035.01.T02

MMNRNSRNTLRFLTRFHHHQHNPSSQFTSKTLFDENCQQLKRNVVPKENQAFNFFNPLINFVKNKQLGHGISCGIHQKCYYGSMGGVVQRSPRFSELNDDDVRYFEEILGKKNVIQDEDKLSVANIDWMHKYKGSSKLILQPCNTDQSLRPVWIGLFELIFQHKHLRDRLEEIMETAYDMSISCLQVSQILKYCNSRCLAVVPQGGNTGLVGGSVPVFDELSYYLLLQVIVSLSSMNNIISFDKVDHLLLERQKIYAL*