Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580025049.01.T01 | XP_003612122.1 | 95.327 | 214 | 10 | 0 | 11 | 224 | 145 | 358 | 4.06E-144 | 421 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580025049.01.T01 | Q1PF50 | 61.86 | 215 | 80 | 1 | 9 | 221 | 152 | 366 | 6.88E-94 | 286 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580025049.01.T01 | G7KGD8 | 95.327 | 214 | 10 | 0 | 11 | 224 | 145 | 358 | 1.94e-144 | 421 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0580025049.01 | MsG0880045771.01 | 0.802458 | 5.556554e-49 | 2.723299e-46 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580025049.01.T01 | MTR_5g021530 | 95.327 | 214 | 10 | 0 | 11 | 224 | 145 | 358 | 4.92e-148 | 421 |
MsG0580025049.01.T01 | MTR_8g076210 | 76.389 | 216 | 51 | 0 | 9 | 224 | 120 | 335 | 1.82e-117 | 342 |
MsG0580025049.01.T01 | MTR_6g014000 | 48.588 | 177 | 35 | 2 | 13 | 189 | 155 | 275 | 2.04e-41 | 147 |
MsG0580025049.01.T01 | MTR_7g105400 | 35.714 | 140 | 79 | 5 | 14 | 142 | 170 | 309 | 5.90e-13 | 67.8 |
MsG0580025049.01.T01 | MTR_7g105390 | 29.075 | 227 | 124 | 9 | 14 | 214 | 165 | 380 | 2.63e-11 | 62.8 |
MsG0580025049.01.T01 | MTR_7g105390 | 34.211 | 114 | 67 | 2 | 14 | 119 | 183 | 296 | 3.41e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580025049.01.T01 | AT4G36190 | 65.438 | 217 | 74 | 1 | 9 | 224 | 152 | 368 | 8.82e-102 | 303 |
MsG0580025049.01.T01 | AT4G36195 | 65.899 | 217 | 73 | 1 | 9 | 224 | 152 | 368 | 1.40e-101 | 303 |
MsG0580025049.01.T01 | AT4G36195 | 65.899 | 217 | 73 | 1 | 9 | 224 | 152 | 368 | 1.58e-101 | 303 |
MsG0580025049.01.T01 | AT4G36195 | 65.899 | 217 | 73 | 1 | 9 | 224 | 152 | 368 | 1.58e-101 | 303 |
MsG0580025049.01.T01 | AT2G18080 | 61.860 | 215 | 80 | 1 | 9 | 221 | 152 | 366 | 7.01e-95 | 286 |
MsG0580025049.01.T01 | AT2G24280 | 27.556 | 225 | 127 | 9 | 15 | 214 | 159 | 372 | 2.60e-11 | 62.8 |
MsG0580025049.01.T01 | AT2G24280 | 27.556 | 225 | 127 | 9 | 15 | 214 | 159 | 372 | 2.92e-11 | 62.8 |
Find 45 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTAAAACTCTTTGATAAATT+TGG | 0.123339 | 5:+13267847 | None:intergenic |
TGATAAATGCTTCCTGAAAT+TGG | 0.189185 | 5:-13268988 | None:intergenic |
TACTGAGGTTGCATACTTTC+AGG | 0.189361 | 5:-13267720 | MsG0580025049.01.T01:CDS |
GACAATCCCTGGTTCGTATT+TGG | 0.213224 | 5:-13268913 | MsG0580025049.01.T01:CDS |
CGGTGATTTCTTGTATTTCT+TGG | 0.250029 | 5:-13268276 | MsG0580025049.01.T01:CDS |
AAGAATATACTGCCAATTTC+AGG | 0.323648 | 5:+13268976 | None:intergenic |
GTATATTAACAATGGAAATA+AGG | 0.325260 | 5:+13267644 | None:intergenic |
CAGTGTTCTTCAAGTTCTTT+TGG | 0.336857 | 5:+13267789 | None:intergenic |
AATTGGCAGTATATTCTTGC+AGG | 0.344349 | 5:-13268971 | MsG0580025049.01.T01:CDS |
GAAGAAGGACGGCGAGGATT+TGG | 0.352683 | 5:-13268093 | MsG0580025049.01.T01:CDS |
AGAGGCTTGCATAATATATC+AGG | 0.380488 | 5:+13268125 | None:intergenic |
GATCGAAAACTTGCAACTAA+TGG | 0.382807 | 5:-13268470 | MsG0580025049.01.T01:CDS |
GCTATCACTGAAAACAGTTC+TGG | 0.427215 | 5:-13267767 | MsG0580025049.01.T01:CDS |
AACTAATGGAAAGGCATTGA+AGG | 0.436371 | 5:-13268456 | MsG0580025049.01.T01:CDS |
TGAATGTTTCAGTTTCAATA+CGG | 0.447537 | 5:-13268152 | MsG0580025049.01.T01:intron |
AACCATGCACTGAGAGCTCC+AGG | 0.463971 | 5:+13268880 | None:intergenic |
TCCTTCTTCGCTTTAACAAG+AGG | 0.482709 | 5:+13268107 | None:intergenic |
GTCGGCAGGTGTTGAATGTA+AGG | 0.485695 | 5:-13268522 | MsG0580025049.01.T01:CDS |
CTTCACAGAATTTGATCAGC+AGG | 0.491409 | 5:-13268788 | MsG0580025049.01.T01:intron |
GAATGTTTCAGTTTCAATAC+GGG | 0.502329 | 5:-13268151 | MsG0580025049.01.T01:intron |
TACTTTCACCTTCAGTTCCA+AGG | 0.504143 | 5:+13267825 | None:intergenic |
GGAGCGTATACTGTCATTTG+AGG | 0.507310 | 5:+13267691 | None:intergenic |
GAAGGACGGCGAGGATTTGG+TGG | 0.507610 | 5:-13268090 | MsG0580025049.01.T01:intron |
GCCTCTTGTTAAAGCGAAGA+AGG | 0.509807 | 5:-13268108 | MsG0580025049.01.T01:CDS |
GTATTTGGTGTTTCATACCC+TGG | 0.529286 | 5:-13268898 | MsG0580025049.01.T01:CDS |
ATGCAGATTGGTGAGTCGGC+AGG | 0.541853 | 5:-13268536 | MsG0580025049.01.T01:intron |
ACCCTGGAGCTCTCAGTGCA+TGG | 0.550259 | 5:-13268882 | MsG0580025049.01.T01:CDS |
TAACATGCAGATTGGTGAGT+CGG | 0.559633 | 5:-13268540 | MsG0580025049.01.T01:intron |
GAGCGTATACTGTCATTTGA+GGG | 0.567349 | 5:+13267692 | None:intergenic |
AGAGAGAAGTATATTAACAA+TGG | 0.576021 | 5:+13267636 | None:intergenic |
AAAACTTGCAACTAATGGAA+AGG | 0.577807 | 5:-13268465 | MsG0580025049.01.T01:CDS |
GGCTGATGCTGCTGTTACAG+CGG | 0.587685 | 5:-13268255 | MsG0580025049.01.T01:intron |
AGACTTCCACATGTTAAATG+TGG | 0.602160 | 5:+13268844 | None:intergenic |
TGAGGTTGCATACTTTCAGG+TGG | 0.602164 | 5:-13267717 | MsG0580025049.01.T01:CDS |
CTTGTTAAAGCGAAGAAGGA+CGG | 0.605377 | 5:-13268104 | MsG0580025049.01.T01:CDS |
TGAAACACCAAATACGAACC+AGG | 0.616013 | 5:+13268906 | None:intergenic |
AAGTTTCCACATTTAACATG+TGG | 0.628526 | 5:-13268850 | MsG0580025049.01.T01:CDS |
TTAAATGTGGAAACTTAAGA+CGG | 0.644137 | 5:+13268857 | None:intergenic |
ACAGTTCTGGTAGACTGTGG+TGG | 0.644242 | 5:-13267754 | MsG0580025049.01.T01:CDS |
GTGGTTTCAAGTTTGTACTG+AGG | 0.661390 | 5:-13267735 | MsG0580025049.01.T01:CDS |
GAAACACCAAATACGAACCA+GGG | 0.662124 | 5:+13268907 | None:intergenic |
GCTCCTCAAAAGTTGACACA+AGG | 0.698403 | 5:-13267673 | MsG0580025049.01.T01:CDS |
ACCATGCACTGAGAGCTCCA+GGG | 0.699923 | 5:+13268881 | None:intergenic |
TAAAGCGAAGAAGGACGGCG+AGG | 0.706442 | 5:-13268099 | MsG0580025049.01.T01:CDS |
AAAACAGTTCTGGTAGACTG+TGG | 0.763757 | 5:-13267757 | MsG0580025049.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CAAGGAAAAATAAAAATGAA+AGG | + | Chr5:13268656-13268675 | None:intergenic | 20.0% |
!! | GTAAAACTCTTTGATAAATT+TGG | + | Chr5:13268787-13268806 | None:intergenic | 20.0% |
!!! | AGATTATAATATGCTTTAGA+AGG | + | Chr5:13268243-13268262 | None:intergenic | 20.0% |
! | ACATATATAATTCACTATGC+AGG | - | Chr5:13268752-13268771 | MsG0580025049.01.T01:intron | 25.0% |
! | AGGAAAAATATTACTAAGCA+AGG | + | Chr5:13268674-13268693 | None:intergenic | 25.0% |
! | ATGACTATATTGTATGACAA+AGG | + | Chr5:13268694-13268713 | None:intergenic | 25.0% |
! | GTTCTATCAAAAACCATATT+TGG | + | Chr5:13267913-13267932 | None:intergenic | 25.0% |
! | TGAATGTTTCAGTTTCAATA+CGG | - | Chr5:13268479-13268498 | MsG0580025049.01.T01:CDS | 25.0% |
! | TTAAATGTGGAAACTTAAGA+CGG | + | Chr5:13267777-13267796 | None:intergenic | 25.0% |
!! | TTTATCAAAGAGTTTTACCT+TGG | - | Chr5:13268789-13268808 | MsG0580025049.01.T01:CDS | 25.0% |
!!! | CTTATTGTATAGTTCTAAGT+TGG | - | Chr5:13268728-13268747 | MsG0580025049.01.T01:intron | 25.0% |
AAAACTTGCAACTAATGGAA+AGG | - | Chr5:13268166-13268185 | MsG0580025049.01.T01:intron | 30.0% | |
AAACATTCACAAAGAAGACA+TGG | + | Chr5:13268468-13268487 | None:intergenic | 30.0% | |
AAGAATATACTGCCAATTTC+AGG | + | Chr5:13267658-13267677 | None:intergenic | 30.0% | |
AAGTTTCCACATTTAACATG+TGG | - | Chr5:13267781-13267800 | MsG0580025049.01.T01:CDS | 30.0% | |
ACAAAAATGTATGACCAAGA+AGG | + | Chr5:13267886-13267905 | None:intergenic | 30.0% | |
GAATGTTTCAGTTTCAATAC+GGG | - | Chr5:13268480-13268499 | MsG0580025049.01.T01:CDS | 30.0% | |
TCTATCTTTAACATGCAGAT+TGG | - | Chr5:13268083-13268102 | MsG0580025049.01.T01:intron | 30.0% | |
! | CATTTTTGTGGATCCAAATA+TGG | - | Chr5:13267897-13267916 | MsG0580025049.01.T01:intron | 30.0% |
! | TACATTTTTGTGTGTCAAGA+TGG | - | Chr5:13268013-13268032 | MsG0580025049.01.T01:intron | 30.0% |
! | TGGTTTTTGATAGAACACTA+TGG | - | Chr5:13267917-13267936 | MsG0580025049.01.T01:intron | 30.0% |
! | TTCTTGGTCATACATTTTTG+TGG | - | Chr5:13267885-13267904 | MsG0580025049.01.T01:intron | 30.0% |
!! | AATCCTGAATGAACTTGTTT+TGG | - | Chr5:13268612-13268631 | MsG0580025049.01.T01:intron | 30.0% |
!! | TTTTCGATCAATAAGTTGAG+TGG | + | Chr5:13268150-13268169 | None:intergenic | 30.0% |
AATTGGCAGTATATTCTTGC+AGG | - | Chr5:13267660-13267679 | MsG0580025049.01.T01:CDS | 35.0% | |
AGACTTCCACATGTTAAATG+TGG | + | Chr5:13267790-13267809 | None:intergenic | 35.0% | |
AGAGGCTTGCATAATATATC+AGG | + | Chr5:13268509-13268528 | None:intergenic | 35.0% | |
AGATAGTGATTTCTCCTTCT+TGG | - | Chr5:13267869-13267888 | MsG0580025049.01.T01:intron | 35.0% | |
AGTCGTAGAAGAAAATCTAG+TGG | + | Chr5:13268296-13268315 | None:intergenic | 35.0% | |
CATCCAAAACAAGTTCATTC+AGG | + | Chr5:13268618-13268637 | None:intergenic | 35.0% | |
CGGTGATTTCTTGTATTTCT+TGG | - | Chr5:13268355-13268374 | MsG0580025049.01.T01:intron | 35.0% | |
GATCGAAAACTTGCAACTAA+TGG | - | Chr5:13268161-13268180 | MsG0580025049.01.T01:intron | 35.0% | |
GTCGTAGAAGAAAATCTAGT+GGG | + | Chr5:13268295-13268314 | None:intergenic | 35.0% | |
TCGTAGAAGAAAATCTAGTG+GGG | + | Chr5:13268294-13268313 | None:intergenic | 35.0% | |
TCTGCCAAAACATTTCGAAA+CGG | - | Chr5:13268586-13268605 | MsG0580025049.01.T01:intron | 35.0% | |
! | GTTGTTGTTGTTGTTGTTGT+TGG | - | Chr5:13267987-13268006 | MsG0580025049.01.T01:intron | 35.0% |
! | GTTTTGCAGCTTGAAATTGA+CGG | - | Chr5:13268335-13268354 | MsG0580025049.01.T01:intron | 35.0% |
!! | AACTAATGGAAAGGCATTGA+AGG | - | Chr5:13268175-13268194 | MsG0580025049.01.T01:intron | 35.0% |
!! | CAGTGTTCTTCAAGTTCTTT+TGG | + | Chr5:13268845-13268864 | None:intergenic | 35.0% |
AAGAAAATCTAGTGGGGACT+CGG | + | Chr5:13268288-13268307 | None:intergenic | 40.0% | |
CTTCACAGAATTTGATCAGC+AGG | - | Chr5:13267843-13267862 | MsG0580025049.01.T01:CDS | 40.0% | |
CTTGTTAAAGCGAAGAAGGA+CGG | - | Chr5:13268527-13268546 | MsG0580025049.01.T01:CDS | 40.0% | |
GAAACACCAAATACGAACCA+GGG | + | Chr5:13267727-13267746 | None:intergenic | 40.0% | |
GAACAAAAACTGACAATCCC+TGG | - | Chr5:13267707-13267726 | MsG0580025049.01.T01:CDS | 40.0% | |
GCTATCACTGAAAACAGTTC+TGG | - | Chr5:13268864-13268883 | MsG0580025049.01.T01:CDS | 40.0% | |
TAACATGCAGATTGGTGAGT+CGG | - | Chr5:13268091-13268110 | MsG0580025049.01.T01:CDS | 40.0% | |
TACTGAGGTTGCATACTTTC+AGG | - | Chr5:13268911-13268930 | MsG0580025049.01.T01:CDS | 40.0% | |
TACTTTCACCTTCAGTTCCA+AGG | + | Chr5:13268809-13268828 | None:intergenic | 40.0% | |
TCCTTCTTCGCTTTAACAAG+AGG | + | Chr5:13268527-13268546 | None:intergenic | 40.0% | |
TCTTCTACGACTCTCATGTT+GGG | - | Chr5:13268304-13268323 | MsG0580025049.01.T01:intron | 40.0% | |
TGAAACACCAAATACGAACC+AGG | + | Chr5:13267728-13267747 | None:intergenic | 40.0% | |
TTCTTCTACGACTCTCATGT+TGG | - | Chr5:13268303-13268322 | MsG0580025049.01.T01:intron | 40.0% | |
! | AAAACAGTTCTGGTAGACTG+TGG | - | Chr5:13268874-13268893 | MsG0580025049.01.T01:CDS | 40.0% |
! | AAGCCTTATCCCACTAAGTA+GGG | + | Chr5:13267966-13267985 | None:intergenic | 40.0% |
! | GAGCGTATACTGTCATTTGA+GGG | + | Chr5:13268942-13268961 | None:intergenic | 40.0% |
! | GAGTTTTACCTTGGAACTGA+AGG | - | Chr5:13268798-13268817 | MsG0580025049.01.T01:CDS | 40.0% |
! | TGAGCCGTTTCGAAATGTTT+TGG | + | Chr5:13268593-13268612 | None:intergenic | 40.0% |
! | TTGCCTTGTGTCAACTTTTG+AGG | + | Chr5:13268964-13268983 | None:intergenic | 40.0% |
!! | GTATTTGGTGTTTCATACCC+TGG | - | Chr5:13267733-13267752 | MsG0580025049.01.T01:CDS | 40.0% |
!! | GTGGTTTCAAGTTTGTACTG+AGG | - | Chr5:13268896-13268915 | MsG0580025049.01.T01:CDS | 40.0% |
AGAAAATCTAGTGGGGACTC+GGG | + | Chr5:13268287-13268306 | None:intergenic | 45.0% | |
CTACTTAGTGGGATAAGGCT+TGG | - | Chr5:13267965-13267984 | MsG0580025049.01.T01:intron | 45.0% | |
CTTATCCCACTAAGTAGGGT+CGG | + | Chr5:13267962-13267981 | None:intergenic | 45.0% | |
GCCTCTTGTTAAAGCGAAGA+AGG | - | Chr5:13268523-13268542 | MsG0580025049.01.T01:CDS | 45.0% | |
GCTCCTCAAAAGTTGACACA+AGG | - | Chr5:13268958-13268977 | MsG0580025049.01.T01:CDS | 45.0% | |
TGAGGTTGCATACTTTCAGG+TGG | - | Chr5:13268914-13268933 | MsG0580025049.01.T01:CDS | 45.0% | |
! | CAAGCCTTATCCCACTAAGT+AGG | + | Chr5:13267967-13267986 | None:intergenic | 45.0% |
! | GACAATCCCTGGTTCGTATT+TGG | - | Chr5:13267718-13267737 | MsG0580025049.01.T01:CDS | 45.0% |
! | GGAGCGTATACTGTCATTTG+AGG | + | Chr5:13268943-13268962 | None:intergenic | 45.0% |
ACTAAGTAGGGTCGGCTACA+TGG | + | Chr5:13267954-13267973 | None:intergenic | 50.0% | |
ATGTAGCCGACCCTACTTAG+TGG | - | Chr5:13267953-13267972 | MsG0580025049.01.T01:intron | 50.0% | |
CGACCCTACTTAGTGGGATA+AGG | - | Chr5:13267960-13267979 | MsG0580025049.01.T01:intron | 50.0% | |
TGTAGCCGACCCTACTTAGT+GGG | - | Chr5:13267954-13267973 | MsG0580025049.01.T01:intron | 50.0% | |
! | ACAGTTCTGGTAGACTGTGG+TGG | - | Chr5:13268877-13268896 | MsG0580025049.01.T01:CDS | 50.0% |
!! | GTCGGCAGGTGTTGAATGTA+AGG | - | Chr5:13268109-13268128 | MsG0580025049.01.T01:CDS | 50.0% |
AACCATGCACTGAGAGCTCC+AGG | + | Chr5:13267754-13267773 | None:intergenic | 55.0% | |
ACCATGCACTGAGAGCTCCA+GGG | + | Chr5:13267753-13267772 | None:intergenic | 55.0% | |
ATGCAGATTGGTGAGTCGGC+AGG | - | Chr5:13268095-13268114 | MsG0580025049.01.T01:CDS | 55.0% | |
GAAGAAGGACGGCGAGGATT+TGG | - | Chr5:13268538-13268557 | MsG0580025049.01.T01:intron | 55.0% | |
GGCTGATGCTGCTGTTACAG+CGG | - | Chr5:13268376-13268395 | MsG0580025049.01.T01:intron | 55.0% | |
TAAAGCGAAGAAGGACGGCG+AGG | - | Chr5:13268532-13268551 | MsG0580025049.01.T01:CDS | 55.0% | |
ACCCTGGAGCTCTCAGTGCA+TGG | - | Chr5:13267749-13267768 | MsG0580025049.01.T01:CDS | 60.0% | |
GAAGGACGGCGAGGATTTGG+TGG | - | Chr5:13268541-13268560 | MsG0580025049.01.T01:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 13267649 | 13269004 | 13267649 | ID=MsG0580025049.01;Name=MsG0580025049.01 |
Chr5 | mRNA | 13267649 | 13269004 | 13267649 | ID=MsG0580025049.01.T01;Parent=MsG0580025049.01;Name=MsG0580025049.01.T01;_AED=0.43;_eAED=0.47;_QI=0|1|0.6|1|1|1|5|0|229 |
Chr5 | exon | 13268789 | 13269004 | 13268789 | ID=MsG0580025049.01.T01:exon:5531;Parent=MsG0580025049.01.T01 |
Chr5 | exon | 13268436 | 13268552 | 13268436 | ID=MsG0580025049.01.T01:exon:5530;Parent=MsG0580025049.01.T01 |
Chr5 | exon | 13268256 | 13268309 | 13268256 | ID=MsG0580025049.01.T01:exon:5529;Parent=MsG0580025049.01.T01 |
Chr5 | exon | 13268091 | 13268162 | 13268091 | ID=MsG0580025049.01.T01:exon:5528;Parent=MsG0580025049.01.T01 |
Chr5 | exon | 13267649 | 13267879 | 13267649 | ID=MsG0580025049.01.T01:exon:5527;Parent=MsG0580025049.01.T01 |
Chr5 | CDS | 13268789 | 13269004 | 13268789 | ID=MsG0580025049.01.T01:cds;Parent=MsG0580025049.01.T01 |
Chr5 | CDS | 13268436 | 13268552 | 13268436 | ID=MsG0580025049.01.T01:cds;Parent=MsG0580025049.01.T01 |
Chr5 | CDS | 13268256 | 13268309 | 13268256 | ID=MsG0580025049.01.T01:cds;Parent=MsG0580025049.01.T01 |
Chr5 | CDS | 13268091 | 13268162 | 13268091 | ID=MsG0580025049.01.T01:cds;Parent=MsG0580025049.01.T01 |
Chr5 | CDS | 13267649 | 13267879 | 13267649 | ID=MsG0580025049.01.T01:cds;Parent=MsG0580025049.01.T01 |
Gene Sequence |
Protein sequence |