AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025346.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025346.01.T02 MTR_5g026730 78.873 71 10 1 1 71 110 175 3.19e-35 117
MsG0580025346.01.T02 MTR_5g026720 59.155 71 9 2 1 71 109 159 2.65e-20 79.0
MsG0580025346.01.T02 MTR_8g071815 50.000 72 30 3 1 68 106 175 1.06e-15 67.4
MsG0580025346.01.T02 MTR_5g064980 44.681 47 26 0 1 47 153 199 6.75e-12 58.9
MsG0580025346.01.T02 MTR_4g120270 47.458 59 24 2 1 59 120 171 1.28e-11 57.8
MsG0580025346.01.T02 MTR_2g090950 50.000 44 22 0 1 44 139 182 3.24e-11 56.6
MsG0580025346.01.T02 MTR_1g082550 42.308 52 30 0 1 52 143 194 3.75e-11 57.0
MsG0580025346.01.T02 MTR_2g436100 62.500 32 12 0 1 32 135 166 4.35e-11 56.6
MsG0580025346.01.T02 MTR_4g030070 38.095 63 39 0 1 63 126 188 5.07e-11 55.8
MsG0580025346.01.T02 MTR_5g064890 47.059 51 23 2 1 50 170 217 5.10e-11 56.6
MsG0580025346.01.T02 MTR_2g090905 65.625 32 11 0 1 32 87 118 7.53e-11 53.9
MsG0580025346.01.T01 MTR_5g026730 86.250 160 16 2 1 159 21 175 6.19e-99 282
MsG0580025346.01.T01 MTR_5g026720 64.417 163 30 5 1 159 21 159 1.64e-63 192
MsG0580025346.01.T01 MTR_8g071815 46.875 160 75 5 1 156 22 175 3.49e-39 131
MsG0580025346.01.T01 MTR_2g041200 38.843 121 73 1 1 120 36 156 3.23e-27 100
MsG0580025346.01.T01 MTR_4g120270 40.708 113 53 4 35 147 73 171 1.80e-19 82.8
MsG0580025346.01.T01 MTR_7g079280 40.476 84 49 1 40 122 74 157 5.63e-19 79.3
MsG0580025346.01.T01 MTR_4g093830 41.509 106 53 3 36 141 124 220 5.76e-19 82.4
MsG0580025346.01.T01 MTR_2g436100 43.299 97 46 3 24 120 79 166 7.31e-19 81.3
MsG0580025346.01.T01 MTR_2g096350 38.000 100 59 2 42 141 107 203 7.88e-19 80.1
MsG0580025346.01.T01 MTR_5g024730 31.206 141 90 3 7 146 44 178 1.03e-18 79.7
MsG0580025346.01.T01 MTR_7g117540 44.737 76 36 1 46 121 80 149 1.32e-18 80.5
MsG0580025346.01.T01 MTR_8g073120 37.273 110 64 2 7 116 37 141 1.37e-18 79.0
MsG0580025346.01.T01 MTR_8g089880 50.704 71 30 2 46 116 131 196 2.22e-18 79.7
MsG0580025346.01.T01 MTR_5g064890 42.553 94 45 4 46 138 132 217 2.50e-18 80.5
MsG0580025346.01.T01 MTR_3g464780 45.349 86 42 2 34 117 94 176 3.21e-18 79.0
MsG0580025346.01.T01 MTR_1g082550 48.529 68 35 0 73 140 127 194 4.49e-18 80.1
MsG0580025346.01.T01 MTR_4g063070 44.156 77 40 1 39 115 305 378 4.57e-18 80.1
MsG0580025346.01.T01 MTR_7g059360 46.575 73 36 1 51 123 139 208 1.30e-17 77.0
MsG0580025346.01.T01 MTR_7g076250 49.231 65 29 1 51 115 72 132 1.49e-17 75.9
MsG0580025346.01.T01 MTR_5g064980 47.619 63 33 0 73 135 137 199 5.17e-17 77.0
MsG0580025346.01.T01 MTR_8g028465 37.838 111 56 3 29 139 81 178 5.59e-17 74.7
MsG0580025346.01.T01 MTR_3g091620 40.964 83 40 1 34 116 97 170 6.57e-17 76.6
MsG0580025346.01.T01 MTR_2g009310 45.570 79 38 2 46 124 139 212 6.70e-17 76.6
MsG0580025346.01.T01 MTR_3g081030 46.970 66 35 0 68 133 114 179 1.11e-16 74.3
MsG0580025346.01.T01 MTR_5g030010 29.586 169 94 6 1 147 66 231 2.00e-16 75.5
MsG0580025346.01.T01 MTR_8g023400 38.318 107 53 4 61 159 107 208 2.04e-16 75.1
MsG0580025346.01.T01 MTR_3g116000 65.116 43 15 0 73 115 104 146 2.07e-16 73.2
MsG0580025346.01.T01 MTR_1g074190 35.938 128 66 6 5 119 53 177 2.47e-16 75.1
MsG0580025346.01.T01 MTR_3g110190 31.111 135 79 3 3 129 20 148 2.89e-16 74.7
MsG0580025346.01.T01 MTR_7g073200 49.254 67 29 1 51 117 90 151 3.68e-16 72.0
MsG0580025346.01.T01 MTR_3g094000 36.170 94 57 1 29 122 78 168 3.89e-16 72.0
MsG0580025346.01.T01 MTR_5g022920 51.724 58 28 0 58 115 174 231 4.05e-16 73.2
MsG0580025346.01.T01 MTR_1g043410 27.152 151 92 3 6 140 46 194 4.30e-16 73.9
MsG0580025346.01.T01 MTR_8g032690 46.774 62 28 1 56 117 7 63 5.54e-16 69.7
MsG0580025346.01.T01 MTR_4g030070 37.349 83 52 0 69 151 106 188 6.36e-16 72.4
MsG0580025346.01.T01 MTR_7g113800 34.921 126 69 3 3 123 53 170 6.87e-16 73.9
MsG0580025346.01.T01 MTR_2g090905 42.254 71 40 1 51 120 48 118 8.17e-16 69.7
MsG0580025346.01.T01 MTR_7g116200 37.079 89 50 1 47 135 73 155 1.08e-15 70.9
MsG0580025346.01.T01 MTR_8g027745 34.328 134 62 4 3 122 242 363 1.16e-15 73.2
MsG0580025346.01.T01 MTR_2g090950 50.000 60 30 0 73 132 123 182 2.44e-15 70.9
MsG0580025346.01.T01 MTR_8g092960 58.696 46 19 0 70 115 127 172 2.46e-15 70.5
MsG0580025346.01.T01 MTR_3g078470 42.254 71 38 1 46 116 80 147 2.52e-15 70.5
MsG0580025346.01.T01 MTR_8g066780 29.921 127 85 1 1 123 66 192 2.52e-15 72.0
MsG0580025346.01.T01 MTR_8g092840 58.696 46 19 0 70 115 137 182 2.71e-15 70.9
MsG0580025346.01.T01 MTR_8g092970 58.696 46 19 0 70 115 128 173 2.98e-15 70.5
MsG0580025346.01.T01 MTR_5g066250 53.846 52 24 0 73 124 160 211 3.29e-15 72.0
MsG0580025346.01.T01 MTR_8g009190 34.951 103 65 1 41 143 75 175 3.68e-15 71.6
MsG0580025346.01.T01 MTR_8g092990 58.696 46 19 0 70 115 138 183 4.19e-15 70.1
MsG0580025346.01.T01 MTR_4g106680 43.421 76 38 1 46 121 110 180 4.25e-15 71.2
MsG0580025346.01.T01 MTR_3g086700 43.056 72 37 1 64 131 62 133 4.60e-15 69.3
MsG0580025346.01.T01 MTR_8g092985 41.026 78 42 2 38 115 107 180 5.39e-15 69.7
MsG0580025346.01.T01 MTR_3g100400 56.250 48 21 0 73 120 156 203 6.25e-15 71.2
MsG0580025346.01.T01 MTR_8g092930 56.522 46 20 0 70 115 136 181 6.80e-15 69.7
MsG0580025346.01.T01 MTR_3g071300 29.921 127 73 2 5 124 40 157 7.40e-15 68.6
MsG0580025346.01.T01 MTR_3g078450 43.662 71 37 1 46 116 80 147 7.58e-15 69.3
MsG0580025346.01.T01 MTR_4g129420 51.667 60 29 0 73 132 144 203 7.72e-15 71.2
MsG0580025346.01.T01 MTR_3g099650 52.941 51 24 0 73 123 136 186 8.39e-15 70.9
MsG0580025346.01.T01 MTR_5g071930 32.174 115 60 2 12 116 26 132 8.65e-15 68.9
MsG0580025346.01.T01 MTR_3g012550 42.424 66 38 0 65 130 100 165 1.04e-14 68.2
MsG0580025346.01.T01 MTR_3g095560 56.522 46 20 0 70 115 133 178 1.17e-14 69.3
MsG0580025346.01.T01 MTR_6g087150 60.465 43 17 0 73 115 119 161 1.32e-14 70.1
MsG0580025346.01.T01 MTR_3g086730 43.056 72 37 1 64 131 62 133 1.36e-14 68.9
MsG0580025346.01.T01 MTR_7g116210 35.955 89 51 1 47 135 15 97 1.50e-14 66.2
MsG0580025346.01.T01 MTR_7g116220 40.845 71 40 1 46 116 74 142 1.51e-14 67.8
MsG0580025346.01.T01 MTR_1g056350 38.095 84 46 2 39 122 75 152 1.66e-14 67.4
MsG0580025346.01.T01 MTR_1g492830 31.000 100 68 1 58 157 73 171 1.66e-14 68.6
MsG0580025346.01.T01 MTR_4g022410 34.211 114 65 3 6 119 56 159 1.79e-14 67.8
MsG0580025346.01.T01 MTR_8g099495 36.559 93 43 2 39 115 297 389 1.90e-14 70.1
MsG0580025346.01.T01 MTR_3g087900 33.962 106 58 5 52 155 55 150 2.10e-14 67.0
MsG0580025346.01.T01 MTR_1g070140 30.303 132 74 5 1 119 50 176 3.54e-14 68.9
MsG0580025346.01.T01 MTR_2g055790 48.980 49 25 0 73 121 100 148 3.73e-14 67.0
MsG0580025346.01.T01 MTR_2g044570 43.836 73 37 1 51 123 65 133 3.84e-14 68.6
MsG0580025346.01.T01 MTR_5g082940 51.020 49 24 0 69 117 99 147 4.40e-14 66.2
MsG0580025346.01.T01 MTR_7g079290 38.158 76 46 1 46 121 129 203 5.33e-14 67.0
MsG0580025346.01.T01 MTR_8g099515 38.000 100 54 3 21 117 287 381 6.33e-14 68.6
MsG0580025346.01.T01 MTR_7g108855 36.842 95 57 1 40 134 64 155 6.54e-14 66.6
MsG0580025346.01.T01 MTR_2g035800 43.077 65 32 1 51 115 85 144 7.89e-14 65.5
MsG0580025346.01.T01 MTR_7g096690 34.513 113 65 4 27 131 52 163 8.05e-14 67.8
MsG0580025346.01.T01 MTR_8g093010 54.348 46 21 0 70 115 131 176 8.79e-14 66.6
MsG0580025346.01.T01 MTR_5g064990 53.061 49 23 0 73 121 143 191 1.13e-13 67.8
MsG0580025346.01.T01 MTR_5g034790 62.791 43 16 0 73 115 142 184 1.23e-13 67.4
MsG0580025346.01.T01 MTR_8g074900 50.000 52 26 0 64 115 171 222 1.30e-13 66.2
MsG0580025346.01.T01 MTR_1g100737 55.556 45 20 0 73 117 123 167 1.34e-13 65.5
MsG0580025346.01.T01 MTR_4g108830 46.269 67 30 1 49 115 128 188 1.59e-13 65.5
MsG0580025346.01.T01 MTR_6g055030 52.727 55 26 0 63 117 116 170 1.61e-13 67.0
MsG0580025346.01.T01 MTR_6g007737 33.673 98 60 1 20 117 111 203 1.63e-13 67.0
MsG0580025346.01.T01 MTR_4g108830 46.269 67 30 1 49 115 156 216 1.70e-13 65.9
MsG0580025346.01.T01 MTR_7g116180 39.437 71 41 1 46 116 71 139 1.92e-13 64.7
MsG0580025346.01.T01 MTR_1g070425 39.437 71 41 1 46 116 72 140 2.88e-13 64.3
MsG0580025346.01.T01 MTR_4g064550 45.161 62 32 2 55 115 196 256 4.13e-13 65.5
MsG0580025346.01.T01 MTR_1g090460 32.456 114 55 2 14 127 58 149 4.18e-13 63.5
MsG0580025346.01.T01 MTR_8g028815 32.075 106 58 4 22 125 52 145 4.51e-13 63.5
MsG0580025346.01.T01 MTR_4g094725 58.140 43 18 0 73 115 106 148 5.18e-13 63.2
MsG0580025346.01.T01 MTR_4g064560 46.552 58 29 2 59 115 194 250 5.36e-13 65.1
MsG0580025346.01.T01 MTR_8g019710 45.614 57 31 0 60 116 41 97 9.65e-13 62.0
MsG0580025346.01.T01 MTR_5g009200 45.098 51 28 0 65 115 342 392 1.01e-12 65.1
MsG0580025346.01.T01 MTR_4g056590 38.462 78 40 2 38 115 96 165 1.15e-12 63.2
MsG0580025346.01.T01 MTR_1g090480 38.806 67 35 1 55 121 90 150 1.19e-12 62.4
MsG0580025346.01.T01 MTR_8g063660 57.778 45 19 0 73 117 94 138 1.95e-12 63.9
MsG0580025346.01.T01 MTR_4g116460 36.364 88 50 4 32 116 443 527 3.43e-12 63.5
MsG0580025346.01.T01 MTR_4g116460 36.364 88 50 4 32 116 400 484 3.43e-12 63.5
MsG0580025346.01.T01 MTR_1g090450 53.333 45 21 0 77 121 111 155 3.67e-12 60.8
MsG0580025346.01.T01 MTR_3g114500 33.333 126 68 4 3 128 17 126 3.96e-12 60.1
MsG0580025346.01.T01 MTR_5g092750 55.814 43 19 0 73 115 185 227 4.76e-12 62.0
MsG0580025346.01.T01 MTR_3g091200 48.214 56 29 0 62 117 320 375 6.32e-12 62.8
MsG0580025346.01.T01 MTR_5g092790 50.000 46 23 0 70 115 182 227 7.99e-12 61.6
MsG0580025346.01.T01 MTR_6g055030 58.140 43 18 0 75 117 97 139 8.89e-12 61.6
MsG0580025346.01.T01 MTR_5g041310 49.020 51 25 1 65 115 107 156 1.25e-11 60.8
MsG0580025346.01.T01 MTR_5g009210 40.000 55 33 0 61 115 303 357 1.38e-11 61.6
MsG0580025346.01.T01 MTR_5g041330 49.020 51 25 1 65 115 97 146 1.39e-11 60.5
MsG0580025346.01.T01 MTR_3g078520 37.662 77 42 2 42 117 76 147 1.45e-11 59.7
MsG0580025346.01.T01 MTR_3g078120 55.814 43 19 0 73 115 85 127 1.54e-11 59.3
MsG0580025346.01.T01 MTR_1g066430 37.879 66 41 0 55 120 633 698 3.08e-11 60.8
MsG0580025346.01.T01 MTR_5g009190 41.176 51 30 0 65 115 286 336 3.10e-11 60.5
MsG0580025346.01.T01 MTR_8g066740 38.571 70 42 1 46 115 80 148 3.45e-11 60.5
MsG0580025346.01.T01 MTR_7g117350 43.103 58 32 1 67 124 317 373 3.47e-11 60.5
MsG0580025346.01.T01 MTR_7g117350 34.884 86 53 2 39 124 283 365 3.49e-11 60.5
MsG0580025346.01.T01 MTR_1g066400 48.000 50 26 0 69 118 479 528 3.69e-11 60.5
MsG0580025346.01.T01 MTR_6g007670 48.214 56 27 1 63 116 21 76 4.62e-11 59.7
MsG0580025346.01.T01 MTR_5g076990 30.469 128 73 4 5 122 34 155 4.78e-11 59.7
MsG0580025346.01.T01 MTR_4g102870 41.818 55 31 1 69 123 312 365 5.35e-11 60.1
MsG0580025346.01.T01 MTR_3g083480 56.250 48 20 1 69 116 233 279 5.52e-11 59.7
MsG0580025346.01.T01 MTR_6g007680 50.000 44 22 0 73 116 66 109 6.43e-11 57.8
MsG0580025346.01.T01 MTR_1g011380 38.983 59 35 1 61 119 329 386 7.08e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025346.01.T02 AT4G10160 56.757 37 16 0 1 37 113 149 1.16e-11 57.8
MsG0580025346.01.T02 AT4G15975 68.750 32 10 0 1 32 92 123 2.18e-11 57.0
MsG0580025346.01.T02 AT1G72310 49.091 55 23 1 1 50 143 197 2.27e-11 57.4
MsG0580025346.01.T02 AT4G10150 54.054 37 17 0 1 37 127 163 3.35e-11 56.6
MsG0580025346.01.T01 AT1G04360 34.091 132 71 4 1 119 52 180 2.40e-19 83.6
MsG0580025346.01.T01 AT5G17600 32.886 149 85 4 1 137 65 210 3.97e-19 82.8
MsG0580025346.01.T01 AT4G10160 51.724 58 28 0 70 127 94 151 1.54e-18 79.3
MsG0580025346.01.T01 AT4G10150 50.877 57 28 0 69 125 107 163 2.03e-18 79.3
MsG0580025346.01.T01 AT1G35330 34.109 129 72 3 5 123 54 179 3.27e-18 80.1
MsG0580025346.01.T01 AT3G03550 48.684 76 37 1 49 124 137 210 3.75e-18 80.1
MsG0580025346.01.T01 AT3G10910 53.226 62 26 1 64 122 105 166 9.20e-18 76.3
MsG0580025346.01.T01 AT4G17905 33.333 126 69 1 6 116 73 198 1.15e-17 78.2
MsG0580025346.01.T01 AT4G17905 33.333 126 69 1 6 116 99 224 1.21e-17 78.6
MsG0580025346.01.T01 AT5G05280 41.237 97 49 2 23 117 67 157 1.29e-17 75.9
MsG0580025346.01.T01 AT1G20823 41.304 92 44 2 25 115 71 153 1.79e-17 75.9
MsG0580025346.01.T01 AT4G33565 50.746 67 31 1 50 116 196 260 4.90e-17 77.0
MsG0580025346.01.T01 AT3G16720 54.545 55 25 0 73 127 119 173 5.28e-17 76.6
MsG0580025346.01.T01 AT2G17450 59.615 52 21 0 64 115 93 144 7.68e-17 73.9
MsG0580025346.01.T01 AT4G15975 60.417 48 19 0 73 120 76 123 1.23e-16 74.3
MsG0580025346.01.T01 AT5G10380 53.571 56 24 1 61 116 125 178 1.66e-16 75.1
MsG0580025346.01.T01 AT5G43420 30.714 140 76 4 1 119 45 184 1.69e-16 75.5
MsG0580025346.01.T01 AT5G01880 42.857 84 39 1 43 117 66 149 1.72e-16 72.4
MsG0580025346.01.T01 AT2G35000 33.846 130 63 4 3 116 56 178 2.75e-16 75.1
MsG0580025346.01.T01 AT1G76410 58.491 53 22 0 63 115 94 146 2.93e-16 72.4
MsG0580025346.01.T01 AT1G72310 42.169 83 41 2 61 138 117 197 4.42e-16 73.9
MsG0580025346.01.T01 AT3G61550 43.011 93 43 3 46 130 103 193 4.75e-16 72.4
MsG0580025346.01.T01 AT3G18930 53.333 60 28 0 73 132 156 215 5.35e-16 74.3
MsG0580025346.01.T01 AT3G18930 53.333 60 28 0 73 132 156 215 5.35e-16 74.3
MsG0580025346.01.T01 AT3G18930 53.333 60 28 0 73 132 156 215 5.35e-16 74.3
MsG0580025346.01.T01 AT1G72220 61.702 47 18 0 73 119 177 223 5.38e-16 74.3
MsG0580025346.01.T01 AT2G46160 39.773 88 50 1 46 130 108 195 5.40e-16 72.4
MsG0580025346.01.T01 AT2G46160 39.773 88 50 1 46 130 108 195 5.40e-16 72.4
MsG0580025346.01.T01 AT4G35480 55.172 58 25 1 64 120 103 160 5.58e-16 72.0
MsG0580025346.01.T01 AT4G24015 54.717 53 24 0 69 121 101 153 6.17e-16 71.2
MsG0580025346.01.T01 AT2G27940 34.286 105 48 3 23 116 89 183 8.16e-16 72.4
MsG0580025346.01.T01 AT1G53820 43.210 81 40 3 67 144 113 190 9.33e-16 73.2
MsG0580025346.01.T01 AT1G33480 43.548 62 35 0 70 131 97 158 1.04e-15 72.4
MsG0580025346.01.T01 AT2G47560 41.975 81 44 1 40 120 78 155 1.21e-15 71.6
MsG0580025346.01.T01 AT2G34990 32.593 135 79 4 5 130 22 153 1.32e-15 72.8
MsG0580025346.01.T01 AT2G34990 32.593 135 79 4 5 130 44 175 1.50e-15 72.8
MsG0580025346.01.T01 AT4G35840 42.667 75 41 1 41 115 161 233 1.64e-15 71.6
MsG0580025346.01.T01 AT1G23980 30.159 126 74 2 5 117 64 188 2.00e-15 72.8
MsG0580025346.01.T01 AT1G28040 37.615 109 54 3 18 119 198 299 2.18e-15 72.0
MsG0580025346.01.T01 AT4G09120 43.590 78 40 2 47 123 99 173 2.27e-15 72.4
MsG0580025346.01.T01 AT1G72200 54.902 51 23 0 73 123 144 194 2.61e-15 72.4
MsG0580025346.01.T01 AT3G62690 40.909 88 46 2 46 132 91 173 2.62e-15 71.2
MsG0580025346.01.T01 AT1G49220 56.250 48 21 0 68 115 130 177 8.16e-15 69.7
MsG0580025346.01.T01 AT3G05200 36.893 103 61 3 46 148 103 201 9.49e-15 70.9
MsG0580025346.01.T01 AT2G34000 31.452 124 74 3 3 120 20 138 1.02e-14 67.8
MsG0580025346.01.T01 AT1G22500 39.583 96 44 3 32 123 83 168 1.05e-14 70.5
MsG0580025346.01.T01 AT5G07040 47.368 57 30 0 65 121 86 142 1.08e-14 67.8
MsG0580025346.01.T01 AT4G09100 34.000 100 55 3 21 120 44 132 1.32e-14 67.0
MsG0580025346.01.T01 AT5G05810 43.421 76 36 2 46 120 124 193 1.53e-14 70.1
MsG0580025346.01.T01 AT5G53110 50.943 53 26 0 65 117 322 374 1.59e-14 70.1
MsG0580025346.01.T01 AT3G18773 30.909 110 70 3 8 115 67 172 1.83e-14 68.6
MsG0580025346.01.T01 AT4G09110 39.286 84 49 2 68 150 117 199 1.99e-14 69.3
MsG0580025346.01.T01 AT2G46495 38.384 99 51 3 29 126 282 371 2.21e-14 69.7
MsG0580025346.01.T01 AT2G46495 38.384 99 51 3 29 126 254 343 2.65e-14 69.3
MsG0580025346.01.T01 AT2G35910 50.000 50 25 0 73 122 147 196 2.84e-14 67.8
MsG0580025346.01.T01 AT2G42350 55.102 49 22 0 73 121 100 148 3.06e-14 67.8
MsG0580025346.01.T01 AT5G47610 50.000 50 25 0 68 117 102 151 3.92e-14 66.6
MsG0580025346.01.T01 AT2G25410 36.559 93 51 2 29 120 289 374 3.96e-14 68.9
MsG0580025346.01.T01 AT4G09130 42.353 85 41 2 64 140 110 194 4.14e-14 68.9
MsG0580025346.01.T01 AT5G66070 34.579 107 59 3 13 115 143 242 4.28e-14 67.8
MsG0580025346.01.T01 AT2G20030 55.814 43 19 0 73 115 124 166 5.92e-14 68.6
MsG0580025346.01.T01 AT2G44578 36.082 97 59 2 53 148 49 143 7.05e-14 65.5
MsG0580025346.01.T01 AT5G06490 45.283 53 29 0 73 125 129 181 8.39e-14 66.2
MsG0580025346.01.T01 AT5G66070 31.068 103 52 1 32 115 116 218 8.53e-14 66.6
MsG0580025346.01.T01 AT5G66070 31.068 103 52 1 32 115 116 218 8.53e-14 66.6
MsG0580025346.01.T01 AT5G42200 36.364 99 57 2 33 130 69 162 1.22e-13 65.1
MsG0580025346.01.T01 AT4G30400 60.465 43 17 0 73 115 134 176 1.24e-13 67.8
MsG0580025346.01.T01 AT2G18650 57.778 45 19 0 73 117 126 170 1.27e-13 67.8
MsG0580025346.01.T01 AT3G60220 39.474 76 44 1 41 116 87 160 1.46e-13 67.0
MsG0580025346.01.T01 AT1G49230 56.250 48 21 0 68 115 126 173 1.61e-13 65.9
MsG0580025346.01.T01 AT5G40250 55.556 45 20 0 73 117 143 187 1.71e-13 67.0
MsG0580025346.01.T01 AT5G27420 28.758 153 99 6 3 153 54 198 1.90e-13 67.0
MsG0580025346.01.T01 AT4G28890 55.814 43 19 0 73 115 123 165 2.12e-13 67.0
MsG0580025346.01.T01 AT3G60966 44.776 67 33 1 56 122 49 111 2.14e-13 63.9
MsG0580025346.01.T01 AT4G40070 48.980 49 25 0 69 117 120 168 2.15e-13 66.6
MsG0580025346.01.T01 AT1G49200 52.083 48 23 0 68 115 131 178 2.21e-13 65.5
MsG0580025346.01.T01 AT2G17730 46.154 65 33 1 51 115 176 238 2.27e-13 65.9
MsG0580025346.01.T01 AT1G49210 56.250 48 19 1 68 115 132 177 2.42e-13 65.5
MsG0580025346.01.T01 AT5G57750 58.140 43 18 0 73 115 122 164 2.42e-13 65.1
MsG0580025346.01.T01 AT3G48030 53.061 49 23 0 73 121 207 255 2.59e-13 66.6
MsG0580025346.01.T01 AT3G48030 53.061 49 23 0 73 121 129 177 2.92e-13 65.9
MsG0580025346.01.T01 AT2G37580 39.286 84 43 2 36 119 113 188 3.53e-13 65.1
MsG0580025346.01.T01 AT2G46493 40.580 69 41 0 51 119 116 184 4.02e-13 64.3
MsG0580025346.01.T01 AT3G14320 38.028 71 41 1 73 143 88 155 5.85e-13 63.9
MsG0580025346.01.T01 AT5G58580 40.580 69 41 0 73 141 138 206 6.50e-13 65.1
MsG0580025346.01.T01 AT3G11110 53.488 43 20 0 75 117 109 151 8.92e-13 62.8
MsG0580025346.01.T01 AT4G17245 48.214 56 28 1 68 122 97 152 1.17e-12 62.8
MsG0580025346.01.T01 AT5G36001 40.580 69 41 0 59 127 250 318 1.25e-12 64.3
MsG0580025346.01.T01 AT4G17920 38.462 91 49 3 26 115 68 152 1.39e-12 64.3
MsG0580025346.01.T01 AT2G42360 44.643 56 31 0 73 128 108 163 1.70e-12 63.2
MsG0580025346.01.T01 AT2G44581 39.726 73 44 0 53 125 50 122 1.98e-12 61.6
MsG0580025346.01.T01 AT1G74410 53.488 43 20 0 73 115 176 218 2.07e-12 62.8
MsG0580025346.01.T01 AT2G46494 49.091 55 27 1 66 119 308 362 2.23e-12 63.9
MsG0580025346.01.T01 AT1G32361 31.250 96 59 1 20 115 108 196 3.36e-12 63.2
MsG0580025346.01.T01 AT4G26400 46.429 56 29 1 73 128 241 295 3.44e-12 63.5
MsG0580025346.01.T01 AT4G26400 46.429 56 29 1 73 128 241 295 3.44e-12 63.5
MsG0580025346.01.T01 AT3G47990 40.741 81 45 3 59 138 206 284 3.65e-12 63.2
MsG0580025346.01.T01 AT3G47990 40.741 81 45 3 59 138 222 300 4.24e-12 63.2
MsG0580025346.01.T01 AT3G47990 40.741 81 45 3 59 138 165 243 5.20e-12 62.8
MsG0580025346.01.T01 AT3G47990 40.741 81 45 3 59 138 165 243 5.20e-12 62.8
MsG0580025346.01.T01 AT3G47990 40.741 81 45 3 59 138 165 243 5.20e-12 62.8
MsG0580025346.01.T01 AT5G56340 44.872 78 39 2 73 147 259 335 5.31e-12 62.8
MsG0580025346.01.T01 AT3G20395 52.273 44 21 0 72 115 170 213 6.35e-12 61.6
MsG0580025346.01.T01 AT3G43430 30.303 99 60 1 59 148 69 167 1.00e-11 60.1
MsG0580025346.01.T01 AT4G32600 33.333 93 39 3 49 119 317 408 1.60e-11 61.6
MsG0580025346.01.T01 AT4G32600 33.333 93 39 3 49 119 317 408 1.60e-11 61.6
MsG0580025346.01.T01 AT1G63840 32.673 101 53 5 24 120 49 138 1.71e-11 59.3
MsG0580025346.01.T01 AT4G11680 53.191 47 21 1 69 115 334 379 1.81e-11 61.2
MsG0580025346.01.T01 AT3G55530 34.091 88 51 2 31 118 175 255 2.13e-11 60.8
MsG0580025346.01.T01 AT5G41440 39.655 58 35 0 61 118 66 123 3.04e-11 57.8
MsG0580025346.01.T01 AT1G12760 42.105 57 32 1 69 125 278 333 3.65e-11 60.5
MsG0580025346.01.T01 AT1G12760 42.105 57 32 1 69 125 349 404 3.76e-11 60.5
MsG0580025346.01.T01 AT3G61460 34.043 94 54 4 30 121 56 143 4.21e-11 58.5
MsG0580025346.01.T01 AT5G20885 38.095 84 34 2 59 127 68 148 4.40e-11 58.5
MsG0580025346.01.T01 AT4G11370 36.145 83 44 3 42 121 60 136 4.53e-11 58.2
MsG0580025346.01.T01 AT1G80400 25.773 97 52 2 49 126 312 407 6.51e-11 59.7
MsG0580025346.01.T01 AT5G46650 36.735 98 55 3 29 125 76 167 6.67e-11 59.3

Find 52 sgRNAs with CRISPR-Local

Find 57 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCATCTTTATTTCTCTTA+TGG 0.248139 5:-17259324 None:intergenic
GGTACTTGTGTGTTGGAATT+AGG 0.279210 5:-17259303 None:intergenic
GGCCGCACTGGCACGACATA+TGG 0.307932 5:-17259491 None:intergenic
CGGCACGTGTGCCGTGTGTT+TGG 0.315099 5:+17259366 MsG0580025346.01.T01:CDS
ACCCCTTCACCGGCGGTGAA+TGG 0.335383 5:+17259535 MsG0580025346.01.T01:CDS
CCCCTTCACCGGCGGTGAAT+GGG 0.363940 5:+17259536 MsG0580025346.01.T01:CDS
GTGGCATTCACCGCCGGTGA+AGG 0.367809 5:-17259514 None:intergenic
AAATAAAGATGATGCTGTTC+CGG 0.378765 5:+17259333 MsG0580025346.01.T01:CDS
GTGGGTTGGTGGTACGTTGT+TGG 0.381894 5:-17259216 None:intergenic
TGCCCATTCACCGCCGGTGA+AGG 0.382116 5:-17259538 None:intergenic
CTCTTATGGTACTTGTGTGT+TGG 0.382483 5:-17259310 None:intergenic
TGGCATTCACCGCCGGTGAA+GGG 0.397115 5:-17259513 None:intergenic
GCCCATTCACCGCCGGTGAA+GGG 0.404543 5:-17259537 None:intergenic
GCCGCACTGGCACGACATAT+GGG 0.415590 5:-17259490 None:intergenic
TCTTCGAGGCTCGGTGTCAC+TGG 0.417000 5:-17259256 None:intergenic
GGCACGTGTGCCGTGTGTTT+GGG 0.419077 5:+17259367 MsG0580025346.01.T01:CDS
CGGTGGCTGTGGTGGGTTGG+TGG 0.421011 5:-17259227 None:intergenic
CGCCGGTGAAGGGGCCGCAC+TGG 0.421886 5:-17259503 None:intergenic
TGCCAGTGCGGCCCCTTCAC+CGG 0.434788 5:+17259501 MsG0580025346.01.T01:CDS
AGATATGAGTCATACCAATA+TGG 0.440702 5:+17259573 MsG0580025346.01.T01:CDS
GGTTGCCGCGGTGGCTGTGG+TGG 0.441991 5:-17259235 None:intergenic
CACGTGCCGTCTTCGCCATC+CGG 0.450170 5:-17259352 None:intergenic
CCGCGGTGGCTGTGGTGGGT+TGG 0.453586 5:-17259230 None:intergenic
GATAGCAAGTGGAACCATAT+TGG 0.454042 5:-17259587 None:intergenic
GGCATTCACCGCCGGTGAAG+GGG 0.480492 5:-17259512 None:intergenic
ACTGGTTGCCGCGGTGGCTG+TGG 0.489023 5:-17259238 None:intergenic
CCCATTCACCGCCGGTGAAG+GGG 0.494286 5:-17259536 None:intergenic
GGTGAATGCCACCCCTTCAC+CGG 0.501178 5:+17259525 MsG0580025346.01.T01:CDS
GTTGCCGCGGTGGCTGTGGT+GGG 0.519607 5:-17259234 None:intergenic
GAAGGGGTGGCATTCACCGC+CGG 0.523458 5:-17259520 None:intergenic
GCTGTTCCGGATGGCGAAGA+CGG 0.525015 5:+17259346 MsG0580025346.01.T01:CDS
TGCTGCTGCCCATTCACCGC+CGG 0.525173 5:-17259544 None:intergenic
AACAAATAATGCTGAACCCA+TGG 0.532597 5:-17259155 None:intergenic
CCGCACTGGCACGACATATG+GGG 0.537356 5:-17259489 None:intergenic
TGCTATCATGCAAAGTGGAT+TGG 0.542443 5:+17259603 MsG0580025346.01.T01:CDS
ATGTTTCATGTATTGACATG+TGG 0.552514 5:+17259446 MsG0580025346.01.T01:CDS
CTCAAAATCTCCCAAACACA+CGG 0.563228 5:-17259377 None:intergenic
ATTCACCGCCGGTGAAGGGG+TGG 0.564983 5:-17259533 None:intergenic
TGGGGCAACTCGAATGCGAA+TGG 0.564989 5:-17259471 None:intergenic
CCAACCCACCACAGCCACCG+CGG 0.566585 5:+17259230 MsG0580025346.01.T01:CDS
GGTGTCACTGGTTGCCGCGG+TGG 0.568402 5:-17259244 None:intergenic
CTCGGTGTCACTGGTTGCCG+CGG 0.576025 5:-17259247 None:intergenic
CCACTTTGCATGATAGCAAG+TGG 0.577422 5:-17259598 None:intergenic
AATTAGGTTTGCTACTGATG+TGG 0.580223 5:-17259287 None:intergenic
TGCAAAGTGGATTGGTGAGA+TGG 0.581284 5:+17259611 MsG0580025346.01.T01:CDS
AAAGATGATGCTGTTCCGGA+TGG 0.595173 5:+17259337 MsG0580025346.01.T01:CDS
TTGAGGAGGGTGAAGAGCTG+AGG 0.599022 5:+17259395 MsG0580025346.01.T01:CDS
CCACTTGCTATCATGCAAAG+TGG 0.603016 5:+17259598 MsG0580025346.01.T01:CDS
TGAAAAGAGTGTAAGCACTC+AGG 0.605719 5:-17259424 None:intergenic
GAATGCCACCCCTTCACCGG+CGG 0.610721 5:+17259528 MsG0580025346.01.T01:CDS
CAGTGCGGCCCCTTCACCGG+CGG 0.612966 5:+17259504 MsG0580025346.01.T01:CDS
CCCCATATGTCGTGCCAGTG+CGG 0.624828 5:+17259489 MsG0580025346.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATCATCTTTATTTCTCTTA+TGG - Chr5:17259327-17259346 None:intergenic 25.0%
!! TTGTTGGTTACAAAAACAAA+TGG - Chr5:17259203-17259222 None:intergenic 25.0%
AAATAAAGATGATGCTGTTC+CGG + Chr5:17259333-17259352 MsG0580025346.01.T01:CDS 30.0%
AGATATGAGTCATACCAATA+TGG + Chr5:17259573-17259592 MsG0580025346.01.T01:CDS 30.0%
! ATGTTTCATGTATTGACATG+TGG + Chr5:17259446-17259465 MsG0580025346.01.T01:CDS 30.0%
!! AATTAGGTTTGCTACTGATG+TGG - Chr5:17259290-17259309 None:intergenic 35.0%
CTCAAAATCTCCCAAACACA+CGG - Chr5:17259380-17259399 None:intergenic 40.0%
CTCTTATGGTACTTGTGTGT+TGG - Chr5:17259313-17259332 None:intergenic 40.0%
GATAGCAAGTGGAACCATAT+TGG - Chr5:17259590-17259609 None:intergenic 40.0%
GGTACTTGTGTGTTGGAATT+AGG - Chr5:17259306-17259325 None:intergenic 40.0%
TGCTATCATGCAAAGTGGAT+TGG + Chr5:17259603-17259622 MsG0580025346.01.T01:CDS 40.0%
! ATGTGGATGTGTTTTCTTCG+AGG - Chr5:17259273-17259292 None:intergenic 40.0%
! TGAAAAGAGTGTAAGCACTC+AGG - Chr5:17259427-17259446 None:intergenic 40.0%
!! TGTTTGGGAGATTTTGAGGA+GGG + Chr5:17259382-17259401 MsG0580025346.01.T01:CDS 40.0%
AAAGATGATGCTGTTCCGGA+TGG + Chr5:17259337-17259356 MsG0580025346.01.T01:CDS 45.0%
CCACTTTGCATGATAGCAAG+TGG - Chr5:17259601-17259620 None:intergenic 45.0%
! CGTGTGTTTGGGAGATTTTG+AGG + Chr5:17259378-17259397 MsG0580025346.01.T01:CDS 45.0%
! GATGTGTTTTCTTCGAGGCT+CGG - Chr5:17259268-17259287 None:intergenic 45.0%
!! CCACTTGCTATCATGCAAAG+TGG + Chr5:17259598-17259617 MsG0580025346.01.T01:CDS 45.0%
!! GTGTTTGGGAGATTTTGAGG+AGG + Chr5:17259381-17259400 MsG0580025346.01.T01:CDS 45.0%
!! TGCAAAGTGGATTGGTGAGA+TGG + Chr5:17259611-17259630 MsG0580025346.01.T01:CDS 45.0%
TGGGGCAACTCGAATGCGAA+TGG - Chr5:17259474-17259493 None:intergenic 55.0%
TTGAGGAGGGTGAAGAGCTG+AGG + Chr5:17259395-17259414 MsG0580025346.01.T01:CDS 55.0%
!! GTGGGTTGGTGGTACGTTGT+TGG - Chr5:17259219-17259238 None:intergenic 55.0%
CCCCATATGTCGTGCCAGTG+CGG + Chr5:17259489-17259508 MsG0580025346.01.T01:CDS 60.0%
GCTGTTCCGGATGGCGAAGA+CGG + Chr5:17259346-17259365 MsG0580025346.01.T01:CDS 60.0%
GGCACGTGTGCCGTGTGTTT+GGG + Chr5:17259367-17259386 MsG0580025346.01.T01:CDS 60.0%
GGTGAATGCCACCCCTTCAC+CGG + Chr5:17259525-17259544 MsG0580025346.01.T01:CDS 60.0%
TGGCATTCACCGCCGGTGAA+GGG - Chr5:17259516-17259535 None:intergenic 60.0%
! CCGCACTGGCACGACATATG+GGG - Chr5:17259492-17259511 None:intergenic 60.0%
! GCCGCACTGGCACGACATAT+GGG - Chr5:17259493-17259512 None:intergenic 60.0%
!! TCTTCGAGGCTCGGTGTCAC+TGG - Chr5:17259259-17259278 None:intergenic 60.0%
ACCCCTTCACCGGCGGTGAA+TGG + Chr5:17259535-17259554 MsG0580025346.01.T01:CDS 65.0%
ATTCACCGCCGGTGAAGGGG+TGG - Chr5:17259512-17259531 None:intergenic 65.0%
CACGTGCCGTCTTCGCCATC+CGG - Chr5:17259355-17259374 None:intergenic 65.0%
CCCATTCACCGCCGGTGAAG+GGG - Chr5:17259539-17259558 None:intergenic 65.0%
CCCCTTCACCGGCGGTGAAT+GGG + Chr5:17259512-17259531 MsG0580025346.01.T01:CDS 65.0%
CGGCACGTGTGCCGTGTGTT+TGG + Chr5:17259366-17259385 MsG0580025346.01.T01:CDS 65.0%
GAAGGGGTGGCATTCACCGC+CGG - Chr5:17259523-17259542 None:intergenic 65.0%
GAATGCCACCCCTTCACCGG+CGG + Chr5:17259528-17259547 MsG0580025346.01.T01:CDS 65.0%
GCCCATTCACCGCCGGTGAA+GGG - Chr5:17259540-17259559 None:intergenic 65.0%
GGCATTCACCGCCGGTGAAG+GGG - Chr5:17259515-17259534 None:intergenic 65.0%
GTGGCATTCACCGCCGGTGA+AGG - Chr5:17259517-17259536 None:intergenic 65.0%
TGCCCATTCACCGCCGGTGA+AGG - Chr5:17259541-17259560 None:intergenic 65.0%
TGCTGCTGCCCATTCACCGC+CGG - Chr5:17259547-17259566 None:intergenic 65.0%
! GGCCGCACTGGCACGACATA+TGG - Chr5:17259494-17259513 None:intergenic 65.0%
!! CTCGGTGTCACTGGTTGCCG+CGG - Chr5:17259250-17259269 None:intergenic 65.0%
ACTGGTTGCCGCGGTGGCTG+TGG - Chr5:17259241-17259260 None:intergenic 70.0%
CCAACCCACCACAGCCACCG+CGG + Chr5:17259230-17259249 MsG0580025346.01.T01:CDS 70.0%
GTTGCCGCGGTGGCTGTGGT+GGG - Chr5:17259237-17259256 None:intergenic 70.0%
TGCCAGTGCGGCCCCTTCAC+CGG + Chr5:17259501-17259520 MsG0580025346.01.T01:CDS 70.0%
!! CGGTGGCTGTGGTGGGTTGG+TGG - Chr5:17259230-17259249 None:intergenic 70.0%
!! GGTGTCACTGGTTGCCGCGG+TGG - Chr5:17259247-17259266 None:intergenic 70.0%
CAGTGCGGCCCCTTCACCGG+CGG + Chr5:17259504-17259523 MsG0580025346.01.T01:CDS 75.0%
GGTTGCCGCGGTGGCTGTGG+TGG - Chr5:17259238-17259257 None:intergenic 75.0%
!! CCGCGGTGGCTGTGGTGGGT+TGG - Chr5:17259233-17259252 None:intergenic 75.0%
! CGCCGGTGAAGGGGCCGCAC+TGG - Chr5:17259506-17259525 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr5 gene 17259157 17259636 17259157 ID=MsG0580025346.01;Name=MsG0580025346.01
Chr5 mRNA 17259157 17259636 17259157 ID=MsG0580025346.01.T01;Parent=MsG0580025346.01;Name=MsG0580025346.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|0|1|0|159
Chr5 exon 17259157 17259636 17259157 ID=MsG0580025346.01.T01:exon:22895;Parent=MsG0580025346.01.T01
Chr5 CDS 17259157 17259636 17259157 ID=MsG0580025346.01.T01:cds;Parent=MsG0580025346.01.T01
Chr5 mRNA 17259421 17259636 17259421 ID=MsG0580025346.01.T02;Parent=MsG0580025346.01;Name=MsG0580025346.01.T02;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|71
Chr5 exon 17259421 17259636 17259421 ID=MsG0580025346.01.T02:exon:22896;Parent=MsG0580025346.01.T02
Chr5 CDS 17259421 17259636 17259421 ID=MsG0580025346.01.T02:cds;Parent=MsG0580025346.01.T02
Gene Sequence

>MsG0580025346.01.T02

ATGCCTGAGTGCTTACACTCTTTTCATGTTTCATGTATTGACATGTGGCTCCATTCGCATTCGAGTTGCCCCATATGTCGTGCCAGTGCGGCCCCTTCACCGGCGGTGAATGCCACCCCTTCACCGGCGGTGAATGGGCAGCAGCACAACATAGATATGAGTCATACCAATATGGTTCCACTTGCTATCATGCAAAGTGGATTGGTGAGATGGTGA

>MsG0580025346.01.T01

ATGGGTTCAGCATTATTTGTTGTTTCAATGTATCATGTTGTAGCCATTTGTTTTTGTAACCAACAACGTACCACCAACCCACCACAGCCACCGCGGCAACCAGTGACACCGAGCCTCGAAGAAAACACATCCACATCAGTAGCAAACCTAATTCCAACACACAAGTACCATAAGAGAAATAAAGATGATGCTGTTCCGGATGGCGAAGACGGCACGTGTGCCGTGTGTTTGGGAGATTTTGAGGAGGGTGAAGAGCTGAGGACTATGCCTGAGTGCTTACACTCTTTTCATGTTTCATGTATTGACATGTGGCTCCATTCGCATTCGAGTTGCCCCATATGTCGTGCCAGTGCGGCCCCTTCACCGGCGGTGAATGCCACCCCTTCACCGGCGGTGAATGGGCAGCAGCACAACATAGATATGAGTCATACCAATATGGTTCCACTTGCTATCATGCAAAGTGGATTGGTGAGATGGTGA

Protein sequence

>MsG0580025346.01.T02

MPECLHSFHVSCIDMWLHSHSSCPICRASAAPSPAVNATPSPAVNGQQHNIDMSHTNMVPLAIMQSGLVRW*

>MsG0580025346.01.T01

MGSALFVVSMYHVVAICFCNQQRTTNPPQPPRQPVTPSLEENTSTSVANLIPTHKYHKRNKDDAVPDGEDGTCAVCLGDFEEGEELRTMPECLHSFHVSCIDMWLHSHSSCPICRASAAPSPAVNATPSPAVNGQQHNIDMSHTNMVPLAIMQSGLVRW*