AlfalfaGEDB | MsG0580025519.01

M. sativa cultivar ZhongmuNo.1 / MsG0580025519.01

KEGG: K03019
GO: GO:0003676 GO:0006351 GO:0008270
PFAM: PF01096

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025519.01.T01	XP_013453676.1	98.261	115	2	0	1	115	14	128	4.14E-79	238

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025519.01.T01	Q9CQZ7	39.13	115	62	2	1	115	2	108	1.78E-23	90.1

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025519.01.T01	A0A072UDK1	98.261	115	2	0	1	115	14	128	1.98e-79	238

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0280007648.01	MsG0580025519.01	-0.801250	9.837870e-49	4.676065e-46

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0580025519.01	MsG0480020877.01	PPI
MsG0580025519.01	MsG0880042844.01	PPI
MsG0580025519.01	MsG0780041712.01	PPI

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025519.01.T01	MTR_5g030180	98.261	115	2	0	1	115	14	128	5.02e-83	238
MsG0580025519.01.T01	MTR_5g030180	98.261	115	2	0	1	115	1	115	5.65e-83	238
MsG0580025519.01.T01	MTR_7g116750	87.069	116	14	1	1	115	1	116	3.99e-73	213

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025519.01.T01	AT4G07950	44.348	115	54	3	1	115	1	105	2.56e-30	104
MsG0580025519.01.T01	AT1G01210	41.739	115	57	3	1	115	1	105	2.75e-28	99.8
MsG0580025519.01.T01	AT1G01210	41.739	115	57	3	1	115	1	105	2.75e-28	99.8
MsG0580025519.01.T01	AT1G01210	41.739	115	57	3	1	115	1	105	2.75e-28	99.8

Showing 1 to 4 of 4 entries

Previous1Next

Find 44 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAAGAGAGAGTGAGC+AGG	0.602444	5:+19934437	None:intergenic
AAAGTAGTACCGTCGGCTTT+TGG	0.414427	5:+19932354	None:intergenic
AAAGTGTGGCCACAAGTGGA+AGG	0.641576	5:-19931265	MsG0580025519.01.T01:CDS
AAATTTGTCGTGACTCGAAT+TGG	0.331864	5:+19932614	None:intergenic
AAGAATAAACCAAAAGCCGA+CGG	0.660260	5:-19932363	MsG0580025519.01.T01:intron
AATTTGTCGTGACTCGAATT+GGG	0.488382	5:+19932615	None:intergenic
ACGACAAATTTCATCCCACA+AGG	0.644788	5:-19932602	MsG0580025519.01.T01:CDS
AGAAGGTATACCGCTATATA+AGG	0.346049	5:+19930969	None:intergenic
AGACAAATGCTGGTTAGGAA+AGG	0.564511	5:-19932420	MsG0580025519.01.T01:CDS
AGAGAAGACAAATGCTGGTT+AGG	0.408988	5:-19932425	MsG0580025519.01.T01:CDS

Showing 1 to 10 of 44 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATAGGGTTTCAAATCG+TGG	-	Chr5:19931874-19931893	MsG0580025519.01.T01:intron	30.0%
AAATCATTAACCATTGCTGA+GGG	+	Chr5:19931442-19931461	None:intergenic	30.0%
AAATTGAATGAGCAATGAGA+GGG	+	Chr5:19931988-19932007	None:intergenic	30.0%
AATAATTCAGTGCCTTTAGT+TGG	-	Chr5:19932703-19932722	MsG0580025519.01.T01:intron	30.0%
ACTGGTTAAGAAGTCTAAAA+AGG	+	Chr5:19931555-19931574	None:intergenic	30.0%
AGCAAATGTTCAAAGCAATT+TGG	+	Chr5:19931194-19931213	None:intergenic	30.0%
ATCTAATGCAAAGGGATAAA+TGG	-	Chr5:19933406-19933425	MsG0580025519.01.T01:intron	30.0%
ATCTTAATACCTGTGTAGTT+TGG	-	Chr5:19932463-19932482	MsG0580025519.01.T01:intron	30.0%
ATTACATTCAACTCAAGAGA+AGG	+	Chr5:19933388-19933407	None:intergenic	30.0%
ATTCTTGTTGATCTCATGAT+GGG	+	Chr5:19933096-19933115	None:intergenic	30.0%

Showing 1 to 10 of 219 entries

Previous1 2 3 4 5…22Next

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	19930984	19934511	19930984	ID=MsG0580025519.01;Name=MsG0580025519.01
Chr5	mRNA	19930984	19934511	19930984	ID=MsG0580025519.01.T01;Parent=MsG0580025519.01;Name=MsG0580025519.01.T01;_AED=0.47;_eAED=0.47;_QI=96\|1\|1\|1\|0\|0\|5\|221\|115
Chr5	exon	19930984	19931191	19930984	ID=MsG0580025519.01.T01:exon:8362;Parent=MsG0580025519.01.T01
Chr5	exon	19931247	19931387	19931247	ID=MsG0580025519.01.T01:exon:8361;Parent=MsG0580025519.01.T01
Chr5	exon	19932364	19932457	19932364	ID=MsG0580025519.01.T01:exon:8360;Parent=MsG0580025519.01.T01
Chr5	exon	19932557	19932682	19932557	ID=MsG0580025519.01.T01:exon:8359;Parent=MsG0580025519.01.T01
Chr5	exon	19934416	19934511	19934416	ID=MsG0580025519.01.T01:exon:8358;Parent=MsG0580025519.01.T01
Chr5	five_prime_UTR	19934416	19934511	19934416	ID=MsG0580025519.01.T01:five_prime_utr;Parent=MsG0580025519.01.T01
Chr5	CDS	19932557	19932682	19932557	ID=MsG0580025519.01.T01:cds;Parent=MsG0580025519.01.T01
Chr5	CDS	19932364	19932457	19932364	ID=MsG0580025519.01.T01:cds;Parent=MsG0580025519.01.T01
Chr5	CDS	19931260	19931387	19931260	ID=MsG0580025519.01.T01:cds;Parent=MsG0580025519.01.T01
Chr5	three_prime_UTR	19931247	19931259	19931247	ID=MsG0580025519.01.T01:three_prime_utr;Parent=MsG0580025519.01.T01
Chr5	three_prime_UTR	19930984	19931191	19930984	ID=MsG0580025519.01.T01:three_prime_utr;Parent=MsG0580025519.01.T01

Gene Sequence	>MsG0580025519.01.T01 ATGGAGTTTTGCCCTATGTGCGGGAGCATGCTGATGCTTGAACTACCCAATTCGAGTCACGACAAATTTCATCCCACAAGGTTTTATTGCCTCACTTGTCCATATATTTGCTCAATCGAGAAAGAGGTTAAGATTAAGAGAAGACAAATGCTGGTTAGGAAAGGGATTGACCCTATTATCTCCCATCATGAGATCAACAAGAATAAACCAAAAGCCGACGTACCATGCCCAAATTGTCGCCATCCTCAAGCTAGTTATCACATGCAACAGACTCGATCAGCTGATGAACCTGCAACAATATTTTACGAGTGCTTGAATGAAAAGTGTGGCCACAAGTGGAAGGAGTGA
Protein sequence	>MsG0580025519.01.T01 MEFCPMCGSMLMLELPNSSHDKFHPTRFYCLTCPYICSIEKEVKIKRRQMLVRKGIDPIISHHEINKNKPKADVPCPNCRHPQASYHMQQTRSADEPATIFYECLNEKCGHKWKE*