AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025519.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025519.01.T01 MTR_5g030180 98.261 115 2 0 1 115 14 128 5.02e-83 238
MsG0580025519.01.T01 MTR_5g030180 98.261 115 2 0 1 115 1 115 5.65e-83 238
MsG0580025519.01.T01 MTR_7g116750 87.069 116 14 1 1 115 1 116 3.99e-73 213
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025519.01.T01 AT4G07950 44.348 115 54 3 1 115 1 105 2.56e-30 104
MsG0580025519.01.T01 AT1G01210 41.739 115 57 3 1 115 1 105 2.75e-28 99.8
MsG0580025519.01.T01 AT1G01210 41.739 115 57 3 1 115 1 105 2.75e-28 99.8
MsG0580025519.01.T01 AT1G01210 41.739 115 57 3 1 115 1 105 2.75e-28 99.8

Find 44 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTGAGGATGGCGACAATT+TGG 0.237510 5:+19931357 None:intergenic
TTCTCGATTGAGCAAATATA+TGG 0.241781 5:+19932561 None:intergenic
ATCTCATGATGGGAGATAAT+AGG 0.295531 5:+19932390 None:intergenic
CTTGAGGATGGCGACAATTT+GGG 0.324696 5:+19931358 None:intergenic
AAATTTGTCGTGACTCGAAT+TGG 0.331864 5:+19932614 None:intergenic
CACTCGTAAAATATTGTTGC+AGG 0.338187 5:+19931297 None:intergenic
AGAAGGTATACCGCTATATA+AGG 0.346049 5:+19930969 None:intergenic
TCACAGTCTCACTCACTCTA+AGG 0.368561 5:-19934415 MsG0580025519.01.T01:intron
TGTCGCAAGCTAGGTCGTTT+CGG 0.394002 5:+19931020 None:intergenic
AGAGAAGACAAATGCTGGTT+AGG 0.408988 5:-19932425 MsG0580025519.01.T01:CDS
AAAGTAGTACCGTCGGCTTT+TGG 0.414427 5:+19932354 None:intergenic
TCTCATGATGGGAGATAATA+GGG 0.429313 5:+19932391 None:intergenic
GGCAGCAGCTGAGAAGCACC+AGG 0.455796 5:+19934458 None:intergenic
TATTCTTGTTGATCTCATGA+TGG 0.460772 5:+19932379 None:intergenic
CATCTCACTCCTTCCACTTG+TGG 0.461178 5:+19931256 None:intergenic
AATTTGTCGTGACTCGAATT+GGG 0.488382 5:+19932615 None:intergenic
CTAGCTTGCGACATCTAACT+AGG 0.494157 5:-19931010 MsG0580025519.01.T01:three_prime_UTR
ATCAGCATGCTCCCGCACAT+AGG 0.496816 5:+19932648 None:intergenic
GACAAATGCTGGTTAGGAAA+GGG 0.497928 5:-19932419 MsG0580025519.01.T01:CDS
CTAGTTAGATGTCGCAAGCT+AGG 0.501116 5:+19931011 None:intergenic
GCAGCAGCTGAGAAGCACCA+GGG 0.501194 5:+19934459 None:intergenic
ATTCTTGTTGATCTCATGAT+GGG 0.514246 5:+19932380 None:intergenic
GATTAAGAGAAGACAAATGC+TGG 0.517033 5:-19932430 MsG0580025519.01.T01:CDS
CGTTTCGGAGGCAGTCACAT+TGG 0.525629 5:+19931035 None:intergenic
TATTTGCTCAATCGAGAAAG+AGG 0.528655 5:-19932556 MsG0580025519.01.T01:intron
GTGAGGCAATAAAACCTTGT+GGG 0.529652 5:+19932588 None:intergenic
CAGCAGCTGAGAAGCACCAG+GGG 0.530591 5:+19934460 None:intergenic
TCAGCATGCTCCCGCACATA+GGG 0.540563 5:+19932649 None:intergenic
AGACAAATGCTGGTTAGGAA+AGG 0.564511 5:-19932420 MsG0580025519.01.T01:CDS
ATGAAAAGTGTGGCCACAAG+TGG 0.599470 5:-19931269 MsG0580025519.01.T01:CDS
AAAACTAAGAGAGAGTGAGC+AGG 0.602444 5:+19934437 None:intergenic
TCGATTCTATGAAGATTCAG+TGG 0.603637 5:-19931140 MsG0580025519.01.T01:three_prime_UTR
GGATGGCGACAATTTGGGCA+TGG 0.605399 5:+19931363 None:intergenic
AGCAGCTGAGAAGCACCAGG+GGG 0.627693 5:+19934461 None:intergenic
AGCAAATATATGGACAAGTG+AGG 0.632197 5:+19932571 None:intergenic
AAAGTGTGGCCACAAGTGGA+AGG 0.641576 5:-19931265 MsG0580025519.01.T01:CDS
ACGACAAATTTCATCCCACA+AGG 0.644788 5:-19932602 MsG0580025519.01.T01:CDS
CGCAAGCTAGGTCGTTTCGG+AGG 0.649350 5:+19931023 None:intergenic
AAGAATAAACCAAAAGCCGA+CGG 0.660260 5:-19932363 MsG0580025519.01.T01:intron
AGTGAGGCAATAAAACCTTG+TGG 0.661965 5:+19932587 None:intergenic
TGTGATAACTAGCTTGAGGA+TGG 0.663098 5:+19931346 None:intergenic
TGCATGTGATAACTAGCTTG+AGG 0.701040 5:+19931342 None:intergenic
TTTCTCATGAGTTAGCGGCG+AGG 0.749474 5:+19931068 None:intergenic
GAGTGCTTGAATGAAAAGTG+TGG 0.765667 5:-19931279 MsG0580025519.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTAATTCAAATATAAATAA+GGG + Chr5:19931603-19931622 None:intergenic 10.0%
!! TTCTAATTCAAATATAAATA+AGG + Chr5:19931604-19931623 None:intergenic 10.0%
!!! TTAAACCTTTAAAATATATT+GGG + Chr5:19933488-19933507 None:intergenic 10.0%
!!! TTTAAACCTTTAAAATATAT+TGG + Chr5:19933489-19933508 None:intergenic 10.0%
!! AAAAATGGAAATAATGATAA+AGG + Chr5:19934042-19934061 None:intergenic 15.0%
!! AGTAAATGAAATATAACTAT+AGG + Chr5:19932361-19932380 None:intergenic 15.0%
!!! AAATGAAATTTTGTTATGAT+TGG - Chr5:19931356-19931375 MsG0580025519.01.T01:CDS 15.0%
!!! AAGTCACTATTTTATTTTAT+AGG - Chr5:19931309-19931328 MsG0580025519.01.T01:CDS 15.0%
!! AAAAGAAAACATGATGAAAT+GGG + Chr5:19933009-19933028 None:intergenic 20.0%
!! ACACAAAATTTGATATGTAT+TGG + Chr5:19933602-19933621 None:intergenic 20.0%
!! AGAAAAGGAAGATATAAAAA+TGG + Chr5:19934057-19934076 None:intergenic 20.0%
!! ATCAAATCAAATCAAATCAA+AGG + Chr5:19932066-19932085 None:intergenic 20.0%
!! ATCTTCGTAACAAAAAAAAT+AGG - Chr5:19931860-19931879 MsG0580025519.01.T01:intron 20.0%
!! ATGTAATAAAATATTAGACC+TGG + Chr5:19932542-19932561 None:intergenic 20.0%
!! CAATTGATTATTCCTTATAT+AGG - Chr5:19934492-19934511 MsG0580025519.01.T01:five_prime_UTR 20.0%
!! CTAAACAACTAGTAAATAAT+AGG + Chr5:19932751-19932770 None:intergenic 20.0%
!! TAAAAGAAAACATGATGAAA+TGG + Chr5:19933010-19933029 None:intergenic 20.0%
!! TCTTCGTAACAAAAAAAATA+GGG - Chr5:19931861-19931880 MsG0580025519.01.T01:intron 20.0%
!! TGTAATAAAATATTAGACCT+GGG + Chr5:19932541-19932560 None:intergenic 20.0%
!! TTGATTGAACCATATTAAAT+AGG + Chr5:19932685-19932704 None:intergenic 20.0%
!! TTGTGAATTAACATTGTTTA+TGG - Chr5:19933950-19933969 MsG0580025519.01.T01:intron 20.0%
!!! CTTTTCTTTTACATGATTTA+CGG - Chr5:19933838-19933857 MsG0580025519.01.T01:intron 20.0%
!!! TATAGGATGAACAAATTTTT+GGG - Chr5:19931326-19931345 MsG0580025519.01.T01:CDS 20.0%
!!! TTATAGGATGAACAAATTTT+TGG - Chr5:19931325-19931344 MsG0580025519.01.T01:CDS 20.0%
!!! TTGATTTGATTTGATTTGAT+TGG - Chr5:19932066-19932085 MsG0580025519.01.T01:intron 20.0%
!!! TTTTGTGTGATTTGTTTTTA+AGG - Chr5:19933614-19933633 MsG0580025519.01.T01:intron 20.0%
!!! TTTTTACCTATTGATCAATT+GGG - Chr5:19932144-19932163 MsG0580025519.01.T01:intron 20.0%
!!! TTTTTTACCTATTGATCAAT+TGG - Chr5:19932143-19932162 MsG0580025519.01.T01:intron 20.0%
! AAAAATTTCTCATGAGTTAG+CGG + Chr5:19934413-19934432 None:intergenic 25.0%
! AAGGAAATAACAAAGAAACA+AGG + Chr5:19934023-19934042 None:intergenic 25.0%
! AGTACTACAAAAGCAATATA+AGG + Chr5:19932489-19932508 None:intergenic 25.0%
! ATAAACCAATACAATCAGTT+CGG + Chr5:19933275-19933294 None:intergenic 25.0%
! ATATAACTATAGGTTTGATG+AGG + Chr5:19932351-19932370 None:intergenic 25.0%
! ATTTGATTATCCAAGTAAAC+AGG + Chr5:19933202-19933221 None:intergenic 25.0%
! CCAATTCATCCTATTTAATA+TGG - Chr5:19932673-19932692 MsG0580025519.01.T01:intron 25.0%
! CCATATTAAATAGGATGAAT+TGG + Chr5:19932676-19932695 None:intergenic 25.0%
! CGAAACTCAAAAATAGAAAA+TGG + Chr5:19932241-19932260 None:intergenic 25.0%
! CTTTAGTCAATAAGATAAGA+GGG + Chr5:19933364-19933383 None:intergenic 25.0%
! TAAACTTCAAAGTTCCTATT+AGG + Chr5:19933768-19933787 None:intergenic 25.0%
! TCGTGAATTAACATTGTTTA+TGG - Chr5:19933875-19933894 MsG0580025519.01.T01:intron 25.0%
! TCTTTAGTCAATAAGATAAG+AGG + Chr5:19933365-19933384 None:intergenic 25.0%
! TGAATGTAATCTAATGCAAA+GGG - Chr5:19933398-19933417 MsG0580025519.01.T01:intron 25.0%
! TTGAATGTAATCTAATGCAA+AGG - Chr5:19933397-19933416 MsG0580025519.01.T01:intron 25.0%
! TTGTTAGTTAGGATTGAAAT+TGG - Chr5:19931644-19931663 MsG0580025519.01.T01:intron 25.0%
! TTTAGTCAATAAGATAAGAG+GGG + Chr5:19933363-19933382 None:intergenic 25.0%
!! AAATTTGATATGTATTGGCA+AGG + Chr5:19933597-19933616 None:intergenic 25.0%
!! CATGTTTTCTTTTACTTTAC+AGG - Chr5:19933016-19933035 MsG0580025519.01.T01:intron 25.0%
!! GTTATGATTGGATTTTGAAT+TGG - Chr5:19931368-19931387 MsG0580025519.01.T01:CDS 25.0%
!! TAGGATTGAAATTGGAATTT+TGG - Chr5:19931652-19931671 MsG0580025519.01.T01:intron 25.0%
!! TCTCTATAAATATTTTGCCT+TGG + Chr5:19932640-19932659 None:intergenic 25.0%
!!! AACTGATTGTATTGGTTTAT+TGG - Chr5:19933275-19933294 MsG0580025519.01.T01:intron 25.0%
!!! ATATATGGTAAAAGTATTGC+TGG + Chr5:19933545-19933564 None:intergenic 25.0%
!!! ATGAACAAATTTTTGGGAAT+TGG - Chr5:19931332-19931351 MsG0580025519.01.T01:CDS 25.0%
!!! ATTTACGAGCTTTAAGAATT+AGG - Chr5:19933654-19933673 MsG0580025519.01.T01:intron 25.0%
!!! CAACACTTTTTTTGTTAGTT+AGG - Chr5:19931633-19931652 MsG0580025519.01.T01:intron 25.0%
!!! GGCTCTAAAGATAAATATTT+CGG - Chr5:19933333-19933352 MsG0580025519.01.T01:intron 25.0%
!!! TGAACAAATTTTTGGGAATT+GGG - Chr5:19931333-19931352 MsG0580025519.01.T01:CDS 25.0%
!!! TTATGGTTTTGTTATTTGAG+CGG - Chr5:19933892-19933911 MsG0580025519.01.T01:intron 25.0%
!!! TTTACGAGCTTTAAGAATTA+GGG - Chr5:19933655-19933674 MsG0580025519.01.T01:intron 25.0%
AAAAATAGGGTTTCAAATCG+TGG - Chr5:19931874-19931893 MsG0580025519.01.T01:intron 30.0%
AAATCATTAACCATTGCTGA+GGG + Chr5:19931442-19931461 None:intergenic 30.0%
AAATTGAATGAGCAATGAGA+GGG + Chr5:19931988-19932007 None:intergenic 30.0%
AATAATTCAGTGCCTTTAGT+TGG - Chr5:19932703-19932722 MsG0580025519.01.T01:intron 30.0%
ACTGGTTAAGAAGTCTAAAA+AGG + Chr5:19931555-19931574 None:intergenic 30.0%
AGCAAATGTTCAAAGCAATT+TGG + Chr5:19931194-19931213 None:intergenic 30.0%
ATCTAATGCAAAGGGATAAA+TGG - Chr5:19933406-19933425 MsG0580025519.01.T01:intron 30.0%
ATCTTAATACCTGTGTAGTT+TGG - Chr5:19932463-19932482 MsG0580025519.01.T01:intron 30.0%
ATTACATTCAACTCAAGAGA+AGG + Chr5:19933388-19933407 None:intergenic 30.0%
ATTCTTGTTGATCTCATGAT+GGG + Chr5:19933096-19933115 None:intergenic 30.0%
ATTTACCTCTGCAACAAATT+AGG - Chr5:19931929-19931948 MsG0580025519.01.T01:intron 30.0%
CAAAAACTAGATCAATCTCT+GGG + Chr5:19931751-19931770 None:intergenic 30.0%
CACAGGTATTAAGATAAAGA+AGG + Chr5:19932458-19932477 None:intergenic 30.0%
GAAGATGTAACTAAAGTTGA+AGG + Chr5:19931800-19931819 None:intergenic 30.0%
GCAAATGTTCAAAGCAATTT+GGG + Chr5:19931193-19931212 None:intergenic 30.0%
GTAACTAAAGTTGAAGGATA+TGG + Chr5:19931794-19931813 None:intergenic 30.0%
GTATTAAGATAAAGAAGGTG+TGG + Chr5:19932453-19932472 None:intergenic 30.0%
TAAAAGAAAAGTAGTACCGT+CGG + Chr5:19933129-19933148 None:intergenic 30.0%
TAAATCATTAACCATTGCTG+AGG + Chr5:19931443-19931462 None:intergenic 30.0%
TAAGAGAGTGAAATTGAGAA+AGG + Chr5:19932025-19932044 None:intergenic 30.0%
TAGATGAATTATGCTTGGTT+TGG - Chr5:19931239-19931258 MsG0580025519.01.T01:intron 30.0%
TATTCTTGTTGATCTCATGA+TGG + Chr5:19933097-19933116 None:intergenic 30.0%
TCGATTAGATGAATTATGCT+TGG - Chr5:19931234-19931253 MsG0580025519.01.T01:intron 30.0%
TCTAATGCAAAGGGATAAAT+GGG - Chr5:19933407-19933426 MsG0580025519.01.T01:intron 30.0%
TCTCAGACAGCTTATATATA+TGG + Chr5:19933560-19933579 None:intergenic 30.0%
TTCTCGATTGAGCAAATATA+TGG + Chr5:19932915-19932934 None:intergenic 30.0%
TTGGATTATCAACTCCTAAT+AGG - Chr5:19933726-19933745 MsG0580025519.01.T01:intron 30.0%
TTTACCTCTGCAACAAATTA+GGG - Chr5:19931930-19931949 MsG0580025519.01.T01:intron 30.0%
! GCTTTTGTAGTACTTTTAGT+TGG - Chr5:19932495-19932514 MsG0580025519.01.T01:intron 30.0%
!! ATTCTCCAATTGCTTGTTTT+AGG - Chr5:19931092-19931111 MsG0580025519.01.T01:three_prime_UTR 30.0%
!! CTAAAAAGGAAGTTTTGTCT+TGG + Chr5:19931541-19931560 None:intergenic 30.0%
!! GAATTTTGTTTGTGATGAAC+AGG - Chr5:19931390-19931409 MsG0580025519.01.T01:intron 30.0%
!! GGTCACCCAATATATTTTAA+AGG - Chr5:19933480-19933499 MsG0580025519.01.T01:intron 30.0%
!! TAACTGGTTGGTAATAGAAA+TGG + Chr5:19932974-19932993 None:intergenic 30.0%
!! TGTATTGGTTTATTGGTCAT+TGG - Chr5:19933282-19933301 MsG0580025519.01.T01:intron 30.0%
!! TTATGCTTGGTTTGGTTAAT+TGG - Chr5:19931247-19931266 MsG0580025519.01.T01:exon 30.0%
!!! AATTGCTTGTTTTAGGCTTA+GGG - Chr5:19931099-19931118 MsG0580025519.01.T01:three_prime_UTR 30.0%
!!! ACGATCTGTTTTTAGTGATT+GGG - Chr5:19933312-19933331 MsG0580025519.01.T01:intron 30.0%
!!! AGGCTTAGGGTTTTAAAATT+GGG - Chr5:19931112-19931131 MsG0580025519.01.T01:three_prime_UTR 30.0%
!!! AGGGTTTTAAAATTGGGAAT+TGG - Chr5:19931118-19931137 MsG0580025519.01.T01:three_prime_UTR 30.0%
!!! GTGTGATTTGTTTTTAAGGA+CGG - Chr5:19933618-19933637 MsG0580025519.01.T01:intron 30.0%
!!! TACGATCTGTTTTTAGTGAT+TGG - Chr5:19933311-19933330 MsG0580025519.01.T01:intron 30.0%
!!! TAGGCTTAGGGTTTTAAAAT+TGG - Chr5:19931111-19931130 MsG0580025519.01.T01:three_prime_UTR 30.0%
!!! TATTTTTTCTAGCACTGTTG+AGG - Chr5:19933459-19933478 MsG0580025519.01.T01:intron 30.0%
!!! TTAATTGGTTTTGTGCATTG+TGG - Chr5:19931262-19931281 MsG0580025519.01.T01:CDS 30.0%
AAATCACTCTTTGCAGAATG+TGG - Chr5:19932280-19932299 MsG0580025519.01.T01:intron 35.0%
AAATTTGTCGTGACTCGAAT+TGG + Chr5:19932862-19932881 None:intergenic 35.0%
AAGAATAAACCAAAAGCCGA+CGG - Chr5:19933110-19933129 MsG0580025519.01.T01:intron 35.0%
AAGATTCTGCGTTCTATGTT+TGG + Chr5:19931845-19931864 None:intergenic 35.0%
AATATAAGGCCAAACTACAC+AGG + Chr5:19932475-19932494 None:intergenic 35.0%
AATTAGGGAAGTAGAAGTTG+TGG - Chr5:19933670-19933689 MsG0580025519.01.T01:intron 35.0%
AATTTGTCGTGACTCGAATT+GGG + Chr5:19932861-19932880 None:intergenic 35.0%
AGATTCTGCGTTCTATGTTT+GGG + Chr5:19931844-19931863 None:intergenic 35.0%
AGCAAATATATGGACAAGTG+AGG + Chr5:19932905-19932924 None:intergenic 35.0%
AGCAAGACAAACTTTGTACA+AGG + Chr5:19933795-19933814 None:intergenic 35.0%
AGGATAGGTTAGTATTACCA+AGG - Chr5:19932620-19932639 MsG0580025519.01.T01:CDS 35.0%
ATCTGACCCAATTGATCAAT+AGG + Chr5:19932153-19932172 None:intergenic 35.0%
ATTGACCGAACTGATTGTAT+TGG - Chr5:19933267-19933286 MsG0580025519.01.T01:intron 35.0%
CACTCGTAAAATATTGTTGC+AGG + Chr5:19934179-19934198 None:intergenic 35.0%
CATTGCTCATTCAATTTCTC+AGG - Chr5:19931991-19932010 MsG0580025519.01.T01:intron 35.0%
CGTTAATTGTGTTGTGAAGA+TGG - Chr5:19932794-19932813 MsG0580025519.01.T01:intron 35.0%
CTAAGCCTAAAACAAGCAAT+TGG + Chr5:19931100-19931119 None:intergenic 35.0%
CTAATGCAAAGGGATAAATG+GGG - Chr5:19933408-19933427 MsG0580025519.01.T01:intron 35.0%
GAAATTGAATGAGCAATGAG+AGG + Chr5:19931989-19932008 None:intergenic 35.0%
GATTAAGAGAAGACAAATGC+TGG - Chr5:19933043-19933062 MsG0580025519.01.T01:intron 35.0%
GCAAAAACTAGATCAATCTC+TGG + Chr5:19931752-19931771 None:intergenic 35.0%
GGTAATACTAACCTATCCTA+GGG + Chr5:19932619-19932638 None:intergenic 35.0%
GTGATGAACAGGTTGTATTT+AGG - Chr5:19931401-19931420 MsG0580025519.01.T01:intron 35.0%
TAGTTCTCCAAATGAAACTG+TGG - Chr5:19931705-19931724 MsG0580025519.01.T01:intron 35.0%
TATTTGCTCAATCGAGAAAG+AGG - Chr5:19932917-19932936 MsG0580025519.01.T01:intron 35.0%
TCGATTCTATGAAGATTCAG+TGG - Chr5:19934333-19934352 MsG0580025519.01.T01:intron 35.0%
TGAGTTTGCATGTTTCAGTT+TGG - Chr5:19933707-19933726 MsG0580025519.01.T01:intron 35.0%
TGGAACAAGCAATAAGAGAT+AGG + Chr5:19932221-19932240 None:intergenic 35.0%
TGGTAATACTAACCTATCCT+AGG + Chr5:19932620-19932639 None:intergenic 35.0%
TTGAATTGAAGGTAACTGGT+TGG + Chr5:19932986-19933005 None:intergenic 35.0%
TTGACTCAACAGTTCCTATT+AGG + Chr5:19933743-19933762 None:intergenic 35.0%
TTGATCAATTGGGTCAGATT+TGG - Chr5:19932154-19932173 MsG0580025519.01.T01:intron 35.0%
! AAGTATTGCTGGCTAAGATT+TGG + Chr5:19933534-19933553 None:intergenic 35.0%
! ATCTCATGATGGGAGATAAT+AGG + Chr5:19933086-19933105 None:intergenic 35.0%
! CATTCTTCTTTAGCTCATTG+TGG - Chr5:19933175-19933194 MsG0580025519.01.T01:intron 35.0%
! GGTAAATCTCTGATTTGACT+CGG + Chr5:19931916-19931935 None:intergenic 35.0%
! TCTCATGATGGGAGATAATA+GGG + Chr5:19933085-19933104 None:intergenic 35.0%
!! CTTTTAGTTGGATCATCTGA+TGG - Chr5:19932507-19932526 MsG0580025519.01.T01:intron 35.0%
!! GATGAAATGGGTTGAATTGA+AGG + Chr5:19932997-19933016 None:intergenic 35.0%
!!! CAATTGCTTGTTTTAGGCTT+AGG - Chr5:19931098-19931117 MsG0580025519.01.T01:three_prime_UTR 35.0%
AAAACTAAGAGAGAGTGAGC+AGG + Chr5:19931039-19931058 None:intergenic 40.0%
AAACTAGATCAATCTCTGGG+TGG + Chr5:19931748-19931767 None:intergenic 40.0%
AAATGATAACCATTGCCCTG+AGG + Chr5:19931580-19931599 None:intergenic 40.0%
AATGATAACCATTGCCCTGA+GGG + Chr5:19931579-19931598 None:intergenic 40.0%
ACGACAAATTTCATCCCACA+AGG - Chr5:19932871-19932890 MsG0580025519.01.T01:intron 40.0%
AGTGAGGCAATAAAACCTTG+TGG + Chr5:19932889-19932908 None:intergenic 40.0%
CGATTCAGAACACCAACTAA+AGG + Chr5:19932718-19932737 None:intergenic 40.0%
CTAGGAGGGAAAAAAAGAAG+AGG + Chr5:19934088-19934107 None:intergenic 40.0%
CTGTTGAGTCAACTCCTAAT+AGG - Chr5:19933751-19933770 MsG0580025519.01.T01:intron 40.0%
GAAGAGGAATGAGTGAGAAA+AGG + Chr5:19934072-19934091 None:intergenic 40.0%
GAGTGCTTGAATGAAAAGTG+TGG - Chr5:19934194-19934213 MsG0580025519.01.T01:intron 40.0%
GTGAGGCAATAAAACCTTGT+GGG + Chr5:19932888-19932907 None:intergenic 40.0%
GTTCAAACCAAGACAAACAG+TGG + Chr5:19933923-19933942 None:intergenic 40.0%
TCATTGTGGACCTGTTTACT+TGG - Chr5:19933189-19933208 MsG0580025519.01.T01:intron 40.0%
! AGACAAATGCTGGTTAGGAA+AGG - Chr5:19933053-19933072 MsG0580025519.01.T01:intron 40.0%
! AGAGAAGACAAATGCTGGTT+AGG - Chr5:19933048-19933067 MsG0580025519.01.T01:intron 40.0%
! AGGGTTTCAAATCGTGGTTT+TGG - Chr5:19931880-19931899 MsG0580025519.01.T01:intron 40.0%
! GACAAATGCTGGTTAGGAAA+GGG - Chr5:19933054-19933073 MsG0580025519.01.T01:intron 40.0%
! TGCATGTGATAACTAGCTTG+AGG + Chr5:19934134-19934153 None:intergenic 40.0%
! TGGGGCTTTAGTTTAGTGTA+AGG - Chr5:19933426-19933445 MsG0580025519.01.T01:intron 40.0%
! TGGGTTGAATTGAAGGTAAC+TGG + Chr5:19932990-19933009 None:intergenic 40.0%
! TGTGATAACTAGCTTGAGGA+TGG + Chr5:19934130-19934149 None:intergenic 40.0%
AATTTGGGCATGGTACTAGG+AGG + Chr5:19934103-19934122 None:intergenic 45.0%
AGAGAGGCCACAGTTTCATT+TGG + Chr5:19931715-19931734 None:intergenic 45.0%
ATTTGGGCATGGTACTAGGA+GGG + Chr5:19934102-19934121 None:intergenic 45.0%
CTAGTTAGATGTCGCAAGCT+AGG + Chr5:19934465-19934484 None:intergenic 45.0%
CTTGAGGATGGCGACAATTT+GGG + Chr5:19934118-19934137 None:intergenic 45.0%
GACAATTTGGGCATGGTACT+AGG + Chr5:19934106-19934125 None:intergenic 45.0%
GGGAAGTAGAAGTTGTGGTA+TGG - Chr5:19933675-19933694 MsG0580025519.01.T01:intron 45.0%
GGTTCAACCACTGTTTGTCT+TGG - Chr5:19933913-19933932 MsG0580025519.01.T01:intron 45.0%
TAGTTGGATCATCTGATGGC+TGG - Chr5:19932511-19932530 MsG0580025519.01.T01:intron 45.0%
TCACAGTCTCACTCACTCTA+AGG - Chr5:19931058-19931077 MsG0580025519.01.T01:three_prime_UTR 45.0%
! ATGAAAAGTGTGGCCACAAG+TGG - Chr5:19934204-19934223 MsG0580025519.01.T01:intron 45.0%
! ATGGAGTTTTGCCCTATGTG+CGG - Chr5:19932813-19932832 MsG0580025519.01.T01:intron 45.0%
! CTAGCTTGCGACATCTAACT+AGG - Chr5:19934463-19934482 MsG0580025519.01.T01:five_prime_UTR 45.0%
! TTAACCATTGCTGAGGGCAT+TGG + Chr5:19931436-19931455 None:intergenic 45.0%
!! GAAGCCCTAATTTGTTGCAG+AGG + Chr5:19931937-19931956 None:intergenic 45.0%
!!! AAAGTAGTACCGTCGGCTTT+TGG + Chr5:19933122-19933141 None:intergenic 45.0%
!! TGAAAAAATAAAATAAAAAT+AGG + Chr5:19933983-19934002 None:intergenic 5.0%
!!! AATATTTTATTACATATATT+AGG - Chr5:19932547-19932566 MsG0580025519.01.T01:intron 5.0%
AAAGTGTGGCCACAAGTGGA+AGG - Chr5:19934208-19934227 MsG0580025519.01.T01:intron 50.0%
ACTTCTTAACCAGTGCCCTC+AGG - Chr5:19931561-19931580 MsG0580025519.01.T01:intron 50.0%
CATCTCACTCCTTCCACTTG+TGG + Chr5:19934220-19934239 None:intergenic 50.0%
CTAACCAATGCCCTCAGCAA+TGG - Chr5:19931429-19931448 MsG0580025519.01.T01:intron 50.0%
CTAACCTATCCTAGGGATCG+TGG + Chr5:19932612-19932631 None:intergenic 50.0%
CTAGATCAATCTCTGGGTGG+TGG + Chr5:19931745-19931764 None:intergenic 50.0%
CTTCTTAACCAGTGCCCTCA+GGG - Chr5:19931562-19931581 MsG0580025519.01.T01:intron 50.0%
GCAGCGGAAGGAGAATACAA+TGG + Chr5:19932590-19932609 None:intergenic 50.0%
GCGGAAGGAGAATACAATGG+TGG + Chr5:19932587-19932606 None:intergenic 50.0%
GCTTGAGGATGGCGACAATT+TGG + Chr5:19934119-19934138 None:intergenic 50.0%
TGTCGCAAGCTAGGTCGTTT+CGG + Chr5:19934456-19934475 None:intergenic 50.0%
TTTCTCATGAGTTAGCGGCG+AGG + Chr5:19934408-19934427 None:intergenic 50.0%
! TGGAGTTTTGCCCTATGTGC+GGG - Chr5:19932814-19932833 MsG0580025519.01.T01:intron 50.0%
ATCAGCATGCTCCCGCACAT+AGG + Chr5:19932828-19932847 None:intergenic 55.0%
CGTTTCGGAGGCAGTCACAT+TGG + Chr5:19934441-19934460 None:intergenic 55.0%
GGATGGCGACAATTTGGGCA+TGG + Chr5:19934113-19934132 None:intergenic 55.0%
TATCCTAGGGATCGTGGCAG+CGG + Chr5:19932606-19932625 None:intergenic 55.0%
TCAGCATGCTCCCGCACATA+GGG + Chr5:19932827-19932846 None:intergenic 55.0%
!! ATCTGATGGCTGGTCTTCCC+AGG - Chr5:19932521-19932540 MsG0580025519.01.T01:intron 55.0%
AACCAGTGCCCTCAGGGCAA+TGG - Chr5:19931568-19931587 MsG0580025519.01.T01:intron 60.0%
CGCAAGCTAGGTCGTTTCGG+AGG + Chr5:19934453-19934472 None:intergenic 60.0%
GCTGCCACGATCCCTAGGAT+AGG - Chr5:19932605-19932624 MsG0580025519.01.T01:CDS 60.0%
! AACCATTGCCCTGAGGGCAC+TGG + Chr5:19931573-19931592 None:intergenic 60.0%
! GGGTGGTGGCGAGAATAGAG+AGG + Chr5:19931731-19931750 None:intergenic 60.0%
!! AGCAGCTGAGAAGCACCAGG+GGG + Chr5:19931015-19931034 None:intergenic 60.0%
!! CAGCAGCTGAGAAGCACCAG+GGG + Chr5:19931016-19931035 None:intergenic 60.0%
!! GCAGCAGCTGAGAAGCACCA+GGG + Chr5:19931017-19931036 None:intergenic 60.0%
CTAGGGATCGTGGCAGCGGA+AGG + Chr5:19932602-19932621 None:intergenic 65.0%
CTTCCGCTGCCACGATCCCT+AGG - Chr5:19932600-19932619 MsG0580025519.01.T01:CDS 65.0%
!! CTGAGAAGCACCAGGGGGCA+GGG + Chr5:19931010-19931029 None:intergenic 65.0%
!! GGCAGCAGCTGAGAAGCACC+AGG + Chr5:19931018-19931037 None:intergenic 65.0%
!! TGAGAAGCACCAGGGGGCAG+GGG + Chr5:19931009-19931028 None:intergenic 65.0%
!! GCTGAGAAGCACCAGGGGGC+AGG + Chr5:19931011-19931030 None:intergenic 70.0%
! CAGCGTGAGCCCCTGCCCCC+TGG - Chr5:19930997-19931016 MsG0580025519.01.T01:three_prime_UTR 80.0%
! CAGGGGGCAGGGGCTCACGC+TGG + Chr5:19930999-19931018 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr5 gene 19930984 19934511 19930984 ID=MsG0580025519.01;Name=MsG0580025519.01
Chr5 mRNA 19930984 19934511 19930984 ID=MsG0580025519.01.T01;Parent=MsG0580025519.01;Name=MsG0580025519.01.T01;_AED=0.47;_eAED=0.47;_QI=96|1|1|1|0|0|5|221|115
Chr5 exon 19930984 19931191 19930984 ID=MsG0580025519.01.T01:exon:8362;Parent=MsG0580025519.01.T01
Chr5 exon 19931247 19931387 19931247 ID=MsG0580025519.01.T01:exon:8361;Parent=MsG0580025519.01.T01
Chr5 exon 19932364 19932457 19932364 ID=MsG0580025519.01.T01:exon:8360;Parent=MsG0580025519.01.T01
Chr5 exon 19932557 19932682 19932557 ID=MsG0580025519.01.T01:exon:8359;Parent=MsG0580025519.01.T01
Chr5 exon 19934416 19934511 19934416 ID=MsG0580025519.01.T01:exon:8358;Parent=MsG0580025519.01.T01
Chr5 five_prime_UTR 19934416 19934511 19934416 ID=MsG0580025519.01.T01:five_prime_utr;Parent=MsG0580025519.01.T01
Chr5 CDS 19932557 19932682 19932557 ID=MsG0580025519.01.T01:cds;Parent=MsG0580025519.01.T01
Chr5 CDS 19932364 19932457 19932364 ID=MsG0580025519.01.T01:cds;Parent=MsG0580025519.01.T01
Chr5 CDS 19931260 19931387 19931260 ID=MsG0580025519.01.T01:cds;Parent=MsG0580025519.01.T01
Chr5 three_prime_UTR 19931247 19931259 19931247 ID=MsG0580025519.01.T01:three_prime_utr;Parent=MsG0580025519.01.T01
Chr5 three_prime_UTR 19930984 19931191 19930984 ID=MsG0580025519.01.T01:three_prime_utr;Parent=MsG0580025519.01.T01
Gene Sequence

>MsG0580025519.01.T01

ATGGAGTTTTGCCCTATGTGCGGGAGCATGCTGATGCTTGAACTACCCAATTCGAGTCACGACAAATTTCATCCCACAAGGTTTTATTGCCTCACTTGTCCATATATTTGCTCAATCGAGAAAGAGGTTAAGATTAAGAGAAGACAAATGCTGGTTAGGAAAGGGATTGACCCTATTATCTCCCATCATGAGATCAACAAGAATAAACCAAAAGCCGACGTACCATGCCCAAATTGTCGCCATCCTCAAGCTAGTTATCACATGCAACAGACTCGATCAGCTGATGAACCTGCAACAATATTTTACGAGTGCTTGAATGAAAAGTGTGGCCACAAGTGGAAGGAGTGA
Protein sequence

>MsG0580025519.01.T01

MEFCPMCGSMLMLELPNSSHDKFHPTRFYCLTCPYICSIEKEVKIKRRQMLVRKGIDPIISHHEINKNKPKADVPCPNCRHPQASYHMQQTRSADEPATIFYECLNEKCGHKWKE*