AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027237.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027237.01.T01 MTR_0194s0040 89.873 158 11 1 36 193 63 215 1.20e-101 294
MsG0580027237.01.T01 MTR_4g129850 61.250 160 55 2 36 193 50 204 1.75e-64 199
MsG0580027237.01.T01 MTR_4g129860 59.375 160 58 2 36 193 51 205 3.08e-61 191
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027237.01.T01 AT1G26160 76.582 158 32 1 36 193 85 237 1.50e-86 257
MsG0580027237.01.T01 AT2G23820 64.557 158 51 1 36 193 89 241 8.01e-69 212
MsG0580027237.01.T01 AT2G23820 65.584 154 48 1 36 189 89 237 3.27e-67 207
MsG0580027237.01.T01 AT1G26160 75.397 126 26 1 36 161 85 205 2.86e-65 201

Find 64 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATGCATGAATCCTTATT+TGG 0.203231 5:-56834363 MsG0580027237.01.T01:CDS
AACAAAATGTGTCAAGTTCT+TGG 0.241345 5:-56835643 MsG0580027237.01.T01:CDS
CATACTCCAACCACAGTTCT+TGG 0.247596 5:+56835501 None:intergenic
CTCATTGCTTCTGATATTCC+TGG 0.268380 5:-56836375 MsG0580027237.01.T01:CDS
AACCCATCCTTTCCTCTTTG+TGG 0.273114 5:+56836461 None:intergenic
GGGAAGTTCCAAACTGAAAT+AGG 0.300209 5:-56834303 None:intergenic
ACAAGCACTGGAATATGAAA+TGG 0.360466 5:-56834641 MsG0580027237.01.T01:CDS
TGGGTTAATCATGGGATTAA+AGG 0.371640 5:-56836444 MsG0580027237.01.T01:CDS
GATTGACTAAGGTCCAAATA+AGG 0.405065 5:+56834350 None:intergenic
AGGTATCATATTTATCCAAC+GGG 0.416417 5:+56840946 None:intergenic
TTATACTCAATAGCTATTGT+AGG 0.435237 5:-56835730 MsG0580027237.01.T01:CDS
GGGTTAATCATGGGATTAAA+GGG 0.440585 5:-56836443 MsG0580027237.01.T01:CDS
TTAAAGCTTCCTGCTCCATT+CGG 0.449281 5:+56835665 None:intergenic
AGGAAAGGATGGGTTAATCA+TGG 0.468444 5:-56836453 MsG0580027237.01.T01:CDS
TCAAAGCCATACGGTACATA+TGG 0.474924 5:+56836403 None:intergenic
TATCATATTATCCGTATCCA+TGG 0.478782 5:+56840980 None:intergenic
GTGGGTACACACGAAGGTAC+GGG 0.487583 5:+56840915 None:intergenic
TGAAATGATTCTACAAGCAC+TGG 0.492894 5:-56834653 MsG0580027237.01.T01:CDS
TGAAAAGAGCCGAATGGAGC+AGG 0.493928 5:-56835674 MsG0580027237.01.T01:CDS
AGTGGGTACACACGAAGGTA+CGG 0.500237 5:+56840914 None:intergenic
CAAGCACTGGAATATGAAAT+GGG 0.501459 5:-56834640 MsG0580027237.01.T01:intron
TTTATCCAACGGGGCGGGCA+CGG 0.507602 5:+56840956 None:intergenic
ACATACCTTCTGCAATATCA+TGG 0.513774 5:+56836235 None:intergenic
ATGTGTCAAGTTCTTGGTGG+AGG 0.521274 5:-56835637 MsG0580027237.01.T01:CDS
TGCAGAGCATGGAAAAGTAC+TGG 0.522727 5:-56834438 MsG0580027237.01.T01:intron
TTCCTGGATTGAGTAGAGAA+AGG 0.531245 5:-56836359 MsG0580027237.01.T01:intron
ACCATCTGATGGTGTGCCTA+AGG 0.532689 5:-56835698 MsG0580027237.01.T01:CDS
ACGGTACATATGGTCAGCTA+TGG 0.543472 5:+56836413 None:intergenic
TCATATTTATCCAACGGGGC+GGG 0.545085 5:+56840951 None:intergenic
AACCTTTCTCTACTCAATCC+AGG 0.548626 5:+56836357 None:intergenic
GCGAGTACCCGTGGGTATTG+AGG 0.550771 5:-56840889 MsG0580027237.01.T01:intron
GATATCCGTGCCCGCCCCGT+TGG 0.551444 5:-56840961 MsG0580027237.01.T01:CDS
GGAAAGGATGGGTTAATCAT+GGG 0.554187 5:-56836452 MsG0580027237.01.T01:CDS
TCAATGGGTACCCATGGATA+CGG 0.563874 5:-56840991 None:intergenic
CGAAGGTACGGGGCGGACAC+AGG 0.569033 5:+56840926 None:intergenic
AAAATGTGTCAAGTTCTTGG+TGG 0.570688 5:-56835640 MsG0580027237.01.T01:CDS
ACCCACTGTGCGAGTACCCG+TGG 0.579233 5:-56840898 MsG0580027237.01.T01:CDS
AGCTGACCATATGTACCGTA+TGG 0.583476 5:-56836409 MsG0580027237.01.T01:CDS
CTCGTCCATGATATTGCAGA+AGG 0.591615 5:-56836240 MsG0580027237.01.T01:intron
CAGGTATCATATTTATCCAA+CGG 0.592524 5:+56840945 None:intergenic
GTTCTTGGTGGAGGGATGAG+AGG 0.593011 5:-56835628 MsG0580027237.01.T01:intron
AGACCACAAAGAGGAAAGGA+TGG 0.598959 5:-56836464 MsG0580027237.01.T01:CDS
ATCATATTATCCGTATCCAT+GGG 0.606953 5:+56840981 None:intergenic
CATGAATACCTCAATACCCA+CGG 0.608192 5:+56840881 None:intergenic
GTGTAGACCACAAAGAGGAA+AGG 0.612615 5:-56836468 MsG0580027237.01.T01:intron
GCCTTAGGCACACCATCAGA+TGG 0.628508 5:+56835697 None:intergenic
TGAGATCCAAGAACTGTGGT+TGG 0.629105 5:-56835507 MsG0580027237.01.T01:CDS
ATCATATTTATCCAACGGGG+CGG 0.633390 5:+56840950 None:intergenic
TAAGGCTGAAAAGAGCCGAA+TGG 0.640673 5:-56835680 MsG0580027237.01.T01:CDS
GGAGATATAACACCATCTGA+TGG 0.641949 5:-56835709 MsG0580027237.01.T01:CDS
TGGGTACACACGAAGGTACG+GGG 0.643130 5:+56840916 None:intergenic
ATGAATACCTCAATACCCAC+GGG 0.643373 5:+56840882 None:intergenic
GACCACAAAGAGGAAAGGAT+GGG 0.643435 5:-56836463 MsG0580027237.01.T01:CDS
CCCACGGGTACTCGCACAGT+GGG 0.645051 5:+56840897 None:intergenic
TGTGTCAAGTTCTTGGTGGA+GGG 0.662562 5:-56835636 MsG0580027237.01.T01:CDS
TGAGTGACATCAAAGCCATA+CGG 0.663318 5:+56836394 None:intergenic
GGTTAATCATGGGATTAAAG+GGG 0.672063 5:-56836442 MsG0580027237.01.T01:CDS
CCCACTGTGCGAGTACCCGT+GGG 0.681956 5:-56840897 MsG0580027237.01.T01:CDS
CGCACAGTGGGTACACACGA+AGG 0.690547 5:+56840909 None:intergenic
GTATTGTGTAGACCACAAAG+AGG 0.700403 5:-56836473 MsG0580027237.01.T01:intron
ACCCACGGGTACTCGCACAG+TGG 0.720722 5:+56840896 None:intergenic
CTGATGAGATCCAAGAACTG+TGG 0.731755 5:-56835511 MsG0580027237.01.T01:CDS
GTACACACGAAGGTACGGGG+CGG 0.761211 5:+56840919 None:intergenic
GGTATCATATTTATCCAACG+GGG 0.796991 5:+56840947 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG - Chr5:56835069-56835088 MsG0580027237.01.T01:intron 0.0%
!! ATATATATATATATATATAT+AGG + Chr5:56835088-56835069 None:intergenic 0.0%
!! ATATATATATATATATATAT+GGG - Chr5:56835069-56835088 MsG0580027237.01.T01:intron 0.0%
!! ATATATATATATATATATAT+GGG + Chr5:56835088-56835069 None:intergenic 0.0%
!! TATATATATATATATATATA+GGG - Chr5:56835070-56835089 MsG0580027237.01.T01:intron 0.0%
!! TATATATATATATATATATA+GGG + Chr5:56835089-56835070 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG - Chr5:56835070-56835089 MsG0580027237.01.T01:intron 0.0%
!! TATATATATATATATATATA+TGG + Chr5:56835089-56835070 None:intergenic 0.0%
!! AAAAATATGAAGTTTATTTA+AGG + Chr5:56837591-56837610 None:intergenic 10.0%
!! AAAAGATTGAAAATAAAAAT+AGG - Chr5:56834635-56834654 MsG0580027237.01.T01:intron 10.0%
!! AATTATATATATACATATAG+GGG + Chr5:56837262-56837281 None:intergenic 10.0%
!! CTAATTATATATATACATAT+AGG + Chr5:56837264-56837283 None:intergenic 10.0%
!! TATAAAATTAGTATAAATGT+TGG - Chr5:56837717-56837736 MsG0580027237.01.T01:intron 10.0%
!! TGATTTACTTAATTTATTAT+CGG - Chr5:56834750-56834769 MsG0580027237.01.T01:intron 10.0%
!!! ATGAAGTATTTTTAAAAAAA+CGG + Chr5:56837554-56837573 None:intergenic 10.0%
!!! TAAACTTCATATTTTTATTT+TGG - Chr5:56837595-56837614 MsG0580027237.01.T01:intron 10.0%
!!! TTTATTTTATTTTATTTTCG+AGG + Chr5:56838151-56838170 None:intergenic 10.0%
!! AAAAAAAAAAAAAGCAAACA+TGG + Chr5:56840234-56840253 None:intergenic 15.0%
!! AAAAAAAAAAAAGCAAACAT+GGG + Chr5:56840233-56840252 None:intergenic 15.0%
!! AAAAAAAAATCAAAAATCCA+TGG + Chr5:56834432-56834451 None:intergenic 15.0%
!! AAAAAAAATCAAAAATCCAT+GGG + Chr5:56834431-56834450 None:intergenic 15.0%
!! AATTATCAAAACCATTAAAA+AGG - Chr5:56836226-56836245 MsG0580027237.01.T01:intron 15.0%
!! AGGTTCATATAAAATAAAAA+AGG - Chr5:56835858-56835877 MsG0580027237.01.T01:intron 15.0%
!! ATAACCCATATATATATATA+GGG + Chr5:56835334-56835315 None:intergenic 15.0%
!! ATAACCCTATATATATATAT+GGG - Chr5:56836681-56836700 MsG0580027237.01.T01:intron 15.0%
!! ATTATCAAAACCATTAAAAA+GGG - Chr5:56836227-56836246 MsG0580027237.01.T01:intron 15.0%
!! CTATGTAAAAAAAAGTTATT+TGG + Chr5:56838280-56838299 None:intergenic 15.0%
!! GAAATAGAATTAAAAAGAAA+AGG - Chr5:56838474-56838493 MsG0580027237.01.T01:intron 15.0%
!! GATTTACTTAATTTATTATC+GGG - Chr5:56834751-56834770 MsG0580027237.01.T01:intron 15.0%
!! TGAATATTACATATTATATG+CGG - Chr5:56837794-56837813 MsG0580027237.01.T01:intron 15.0%
!!! AATTTTTTGTTTTGTATTCA+GGG - Chr5:56840959-56840978 MsG0580027237.01.T01:CDS 15.0%
!!! ATAATTTGTGTAAATGAAAT+TGG + Chr5:56836127-56836146 None:intergenic 15.0%
!!! ATCATCAAATTATTTTGAAA+TGG + Chr5:56838243-56838262 None:intergenic 15.0%
!!! TAATTTTTTGTTTTGTATTC+AGG - Chr5:56840958-56840977 MsG0580027237.01.T01:CDS 15.0%
!!! TATTTTTTAGCATTACAAAA+CGG + Chr5:56840803-56840822 None:intergenic 15.0%
!! AAAAAGAAAAGGACAAAAAA+TGG - Chr5:56838485-56838504 MsG0580027237.01.T01:intron 20.0%
!! AAAAATTATGTGATTGACTA+AGG + Chr5:56840946-56840965 None:intergenic 20.0%
!! ACATCATAAAACATATCATA+TGG + Chr5:56834578-56834597 None:intergenic 20.0%
!! CAATAAAGATAAAAGGAATT+TGG - Chr5:56839467-56839486 MsG0580027237.01.T01:intron 20.0%
!! CATAACCCATATATATATAT+AGG + Chr5:56835333-56835314 None:intergenic 20.0%
!! CATAACCCTATATATATATA+TGG - Chr5:56836680-56836699 MsG0580027237.01.T01:intron 20.0%
!! TAAAAATCATGAATTTCCTA+TGG + Chr5:56834549-56834568 None:intergenic 20.0%
!! TAAAATAAAAAAGGAAGTCA+TGG - Chr5:56835867-56835886 MsG0580027237.01.T01:intron 20.0%
!! TAAATCTAATGGCTATTATT+TGG + Chr5:56835644-56835663 None:intergenic 20.0%
!! TAAGTTTAGATAAAGTTCAA+CGG - Chr5:56838120-56838139 MsG0580027237.01.T01:intron 20.0%
!! TAGATCTGTAATATGAAAAT+TGG - Chr5:56840564-56840583 MsG0580027237.01.T01:intron 20.0%
!! TATATATAGATTATGACCAT+TGG + Chr5:56836467-56836486 None:intergenic 20.0%
!! TGTAAAAAAAAGTTATTTGG+AGG + Chr5:56838277-56838296 None:intergenic 20.0%
!!! AATTTGGAACATTAAAAACT+TGG - Chr5:56840036-56840055 MsG0580027237.01.T01:intron 20.0%
!!! AGATCTAAATTTTAAAGACA+TGG + Chr5:56835030-56835049 None:intergenic 20.0%
!!! AGTGATTTTCAAATGAAATT+AGG - Chr5:56838025-56838044 MsG0580027237.01.T01:intron 20.0%
!!! ATGGATAATTGTTTTTGTTT+AGG - Chr5:56836025-56836044 MsG0580027237.01.T01:intron 20.0%
!!! GTTAATTTGAGAGTTAAATA+TGG - Chr5:56836181-56836200 MsG0580027237.01.T01:intron 20.0%
!!! GTTTAAAAGTTGAAGTTTTT+TGG + Chr5:56834483-56834502 None:intergenic 20.0%
! AAAAAGGGAACTTTAATCTA+GGG - Chr5:56836242-56836261 MsG0580027237.01.T01:CDS 25.0%
! AAATATGGAAAAATCTCGTT+TGG - Chr5:56838214-56838233 MsG0580027237.01.T01:intron 25.0%
! AAATGTAATGTAATGCAATC+AGG + Chr5:56839177-56839196 None:intergenic 25.0%
! AACAGAGAAATTTACTTTGA+AGG + Chr5:56839910-56839929 None:intergenic 25.0%
! AACTGTGAAACTAAATGAAA+AGG + Chr5:56835709-56835728 None:intergenic 25.0%
! AAGATAATACATGAAATGGA+TGG + Chr5:56834986-56835005 None:intergenic 25.0%
! AAGTTGTTAAATACACCTTA+AGG + Chr5:56837179-56837198 None:intergenic 25.0%
! AATAGGGATTCATGTTAATT+AGG - Chr5:56840274-56840293 MsG0580027237.01.T01:intron 25.0%
! AATTTCTCTGTTTACTATCT+TGG - Chr5:56839918-56839937 MsG0580027237.01.T01:intron 25.0%
! ACACCTTAATAAAAACTAGT+AGG - Chr5:56837222-56837241 MsG0580027237.01.T01:intron 25.0%
! ACATTCAATTCAATCAGATA+AGG + Chr5:56838784-56838803 None:intergenic 25.0%
! ACTTAATTTATTATCGGGTA+TGG - Chr5:56834756-56834775 MsG0580027237.01.T01:intron 25.0%
! AGGTCTACAATAAAGATAAA+AGG - Chr5:56839460-56839479 MsG0580027237.01.T01:intron 25.0%
! ATAAAAATAGGTTGTTAACG+AGG - Chr5:56834647-56834666 MsG0580027237.01.T01:CDS 25.0%
! ATAAATCGTACATAATCCAT+AGG - Chr5:56834530-56834549 MsG0580027237.01.T01:intron 25.0%
! ATGAATCTGAAAAAAGAGAT+TGG - Chr5:56839298-56839317 MsG0580027237.01.T01:intron 25.0%
! CAGTAAAATTTCCTTCAATA+AGG - Chr5:56834683-56834702 MsG0580027237.01.T01:intron 25.0%
! CATTCAATTCAATCAGATAA+GGG + Chr5:56838783-56838802 None:intergenic 25.0%
! CTCTTGAAATTGAAATTTCA+AGG - Chr5:56835965-56835984 MsG0580027237.01.T01:intron 25.0%
! CTTAATTTATTATCGGGTAT+GGG - Chr5:56834757-56834776 MsG0580027237.01.T01:intron 25.0%
! CTTTCGTAATATGAATTCAA+AGG + Chr5:56840705-56840724 None:intergenic 25.0%
! GTATTATAGCAAATGCATAT+AGG - Chr5:56837099-56837118 MsG0580027237.01.T01:intron 25.0%
! GTCCATATCCATATAATAAT+GGG - Chr5:56834811-56834830 MsG0580027237.01.T01:intron 25.0%
! TAAAAAGGGAACTTTAATCT+AGG - Chr5:56836241-56836260 MsG0580027237.01.T01:CDS 25.0%
! TAAAGTTGTTACCTTATTGA+AGG + Chr5:56834697-56834716 None:intergenic 25.0%
! TAATTAACATGAATCCCTAT+TGG + Chr5:56840275-56840294 None:intergenic 25.0%
! TACAGATTATAAACACTATC+CGG + Chr5:56839325-56839344 None:intergenic 25.0%
! TACCCATTATTATATGGATA+TGG + Chr5:56834816-56834835 None:intergenic 25.0%
! TGGTTATTAGTTAGATTGTT+GGG - Chr5:56836268-56836287 MsG0580027237.01.T01:intron 25.0%
! TGTCCATATCCATATAATAA+TGG - Chr5:56834810-56834829 MsG0580027237.01.T01:intron 25.0%
! TTATACTCAATAGCTATTGT+AGG - Chr5:56839552-56839571 MsG0580027237.01.T01:intron 25.0%
! TTATTATATGGATATGGACA+CGG + Chr5:56834810-56834829 None:intergenic 25.0%
! TTGGTTATTAGTTAGATTGT+TGG - Chr5:56836267-56836286 MsG0580027237.01.T01:intron 25.0%
! TTTGACTACCCATTATTATA+TGG + Chr5:56834822-56834841 None:intergenic 25.0%
!! ACACCTTCTAAAAAATAAGT+GGG - Chr5:56837075-56837094 MsG0580027237.01.T01:intron 25.0%
!! ACTCCTTCTAAAAAATAAGT+GGG + Chr5:56837140-56837159 None:intergenic 25.0%
!! AGCTCATACATTTTTAAATG+TGG + Chr5:56837860-56837879 None:intergenic 25.0%
!! CTACGATAATAGATTTTTGT+TGG + Chr5:56840006-56840025 None:intergenic 25.0%
!! CTTTTATGTGCTTATATTCA+TGG + Chr5:56837418-56837437 None:intergenic 25.0%
!! GATTAAAGTTCCCTTTTTAA+TGG + Chr5:56836240-56836259 None:intergenic 25.0%
!! TTTAAGTGAACCTTTTAATC+TGG - Chr5:56836426-56836445 MsG0580027237.01.T01:CDS 25.0%
!! TTTGTCACTAAATTTTGCTT+TGG + Chr5:56839351-56839370 None:intergenic 25.0%
!!! AAAAACTTGGTTTGATTTTG+AGG - Chr5:56840049-56840068 MsG0580027237.01.T01:intron 25.0%
!!! ACACCTACTAGTTTTTATTA+AGG + Chr5:56837228-56837247 None:intergenic 25.0%
!!! ATTTTTCTTTTAAGTTCCGT+CGG - Chr5:56839690-56839709 MsG0580027237.01.T01:intron 25.0%
!!! TGATTTTGAGGATAATATGA+AGG - Chr5:56840061-56840080 MsG0580027237.01.T01:intron 25.0%
!!! TGTTGTAAAAGATTTTGACA+AGG - Chr5:56839829-56839848 MsG0580027237.01.T01:intron 25.0%
!!! TTTGAGATGACATTCTTTTT+TGG - Chr5:56839739-56839758 MsG0580027237.01.T01:intron 25.0%
!!! TTTTTTATGTGTAGCCAATA+GGG - Chr5:56840258-56840277 MsG0580027237.01.T01:intron 25.0%
!!! TTTTTTTATGTGTAGCCAAT+AGG - Chr5:56840257-56840276 MsG0580027237.01.T01:intron 25.0%
AAAGTGAAAATCACACCTTA+AGG - Chr5:56836819-56836838 MsG0580027237.01.T01:intron 30.0%
AAAGTGAAAATCACACCTTA+AGG + Chr5:56836838-56836819 None:intergenic 30.0%
AACAAAATGTGTCAAGTTCT+TGG - Chr5:56839639-56839658 MsG0580027237.01.T01:intron 30.0%
AAGTAGTTAAATACACCCTA+AGG + Chr5:56837033-56837052 None:intergenic 30.0%
AATGAACAGTCCAGATTAAA+AGG + Chr5:56836439-56836458 None:intergenic 30.0%
ACAATTATCCATAGCTTCAA+AGG + Chr5:56836017-56836036 None:intergenic 30.0%
ACACAAGAAAATCAAAGAAC+AGG - Chr5:56836299-56836318 MsG0580027237.01.T01:intron 30.0%
ACACAAGAAACAACGAAAAT+AGG + Chr5:56838431-56838450 None:intergenic 30.0%
ACACCTTCATAAAAAGTAGT+TGG - Chr5:56835131-56835150 MsG0580027237.01.T01:intron 30.0%
ACACCTTCATAAAAGTAAGT+TGG + Chr5:56836777-56836796 None:intergenic 30.0%
ACTCCCACATAAAAATTAGT+GGG + Chr5:56836994-56837013 None:intergenic 30.0%
AGATAAAAGGAATTTGGCTA+AGG - Chr5:56839473-56839492 MsG0580027237.01.T01:intron 30.0%
AGCCATTAGATTTAAGTCAA+CGG - Chr5:56835650-56835669 MsG0580027237.01.T01:CDS 30.0%
AGGTATCATATTTATCCAAC+GGG + Chr5:56834339-56834358 None:intergenic 30.0%
ATAAAAGACACCTTCACAAA+AGG - Chr5:56836647-56836666 MsG0580027237.01.T01:intron 30.0%
ATGATAACTAATGCTACAAG+AGG + Chr5:56839970-56839989 None:intergenic 30.0%
CAATTATCCATAGCTTCAAA+GGG + Chr5:56836016-56836035 None:intergenic 30.0%
CACAAGAAACAACGAAAATA+GGG + Chr5:56838430-56838449 None:intergenic 30.0%
CAGGTATCATATTTATCCAA+CGG + Chr5:56834340-56834359 None:intergenic 30.0%
GAAATGCATGAATCCTTATT+TGG - Chr5:56840919-56840938 MsG0580027237.01.T01:CDS 30.0%
GAGGGAAAAAAACATAGTAA+AGG + Chr5:56840530-56840549 None:intergenic 30.0%
GGCTAAGATAATACATGAAA+TGG + Chr5:56834990-56835009 None:intergenic 30.0%
TACATATTATATGCGGTGAT+CGG - Chr5:56837801-56837820 MsG0580027237.01.T01:intron 30.0%
TACATTTCCTTCATCATTAG+AGG - Chr5:56837933-56837952 MsG0580027237.01.T01:intron 30.0%
TGATAACTAATGCTACAAGA+GGG + Chr5:56839969-56839988 None:intergenic 30.0%
TTAATAATTACGCAAGCAGT+CGG - Chr5:56838511-56838530 MsG0580027237.01.T01:intron 30.0%
TTATTAGTTAGATTGTTGGG+AGG - Chr5:56836271-56836290 MsG0580027237.01.T01:intron 30.0%
TTATTGTTTATCGTCTTGTG+CGG - Chr5:56838050-56838069 MsG0580027237.01.T01:intron 30.0%
TTCATCGAATAACATGTATC+TGG + Chr5:56839283-56839302 None:intergenic 30.0%
TTCTCAGATTCATTGAATGA+CGG - Chr5:56839227-56839246 MsG0580027237.01.T01:intron 30.0%
TTGATGAGTTCAACAGTTAA+AGG + Chr5:56840740-56840759 None:intergenic 30.0%
TTTATTGTAGACCTATACAC+CGG + Chr5:56839454-56839473 None:intergenic 30.0%
! ACACCCACTAATTTTTATGT+GGG - Chr5:56836988-56837007 MsG0580027237.01.T01:intron 30.0%
! ATAGAAGACATCTTTTGTGA+AGG - Chr5:56836709-56836728 MsG0580027237.01.T01:intron 30.0%
! ATCTAAAGATGCATTTTACG+AGG + Chr5:56840549-56840568 None:intergenic 30.0%
! ATGACTAGATGATTGATTCT+AGG + Chr5:56840204-56840223 None:intergenic 30.0%
! CACACCTTCTAAAAAATAAG+TGG - Chr5:56837074-56837093 MsG0580027237.01.T01:intron 30.0%
! CACTCCTTCTAAAAAATAAG+TGG + Chr5:56837141-56837160 None:intergenic 30.0%
! GAATTTTTCATTTCAACTGC+AGG - Chr5:56840869-56840888 MsG0580027237.01.T01:intron 30.0%
! TCGTAGATGTATCTGAAATT+TGG - Chr5:56840020-56840039 MsG0580027237.01.T01:intron 30.0%
! TCTAAAGATGCATTTTACGA+GGG + Chr5:56840548-56840567 None:intergenic 30.0%
! TGACTAGATGATTGATTCTA+GGG + Chr5:56840203-56840222 None:intergenic 30.0%
! TTTTAGCAACATTCACCTTA+AGG - Chr5:56837161-56837180 MsG0580027237.01.T01:intron 30.0%
! TTTTATCAAGTCACACCTTA+AGG - Chr5:56835392-56835411 MsG0580027237.01.T01:intron 30.0%
! TTTTATCAAGTCACACCTTA+AGG + Chr5:56835411-56835392 None:intergenic 30.0%
! TTTTTAAATGTGGAGAAGTG+AGG + Chr5:56837850-56837869 None:intergenic 30.0%
!! AAAGACACCAACTTACTTTT+AGG + Chr5:56836786-56836767 None:intergenic 30.0%
!! AACCGTTGACTTAAATCTAA+TGG + Chr5:56835655-56835674 None:intergenic 30.0%
!! ACACCAACTTACTTTTATGA+AGG - Chr5:56836771-56836790 MsG0580027237.01.T01:intron 30.0%
!!! ACACCAACTACTTTTTATGA+AGG + Chr5:56835225-56835244 None:intergenic 30.0%
!!! ACACCCACTTATTTTTTAGA+AGG - Chr5:56837134-56837153 MsG0580027237.01.T01:intron 30.0%
!!! ACACCCACTTATTTTTTAGA+AGG + Chr5:56837153-56837134 None:intergenic 30.0%
!!! CTAATTGCATTGTTTTGATC+AGG - Chr5:56840605-56840624 MsG0580027237.01.T01:intron 30.0%
AAAACCACCTCTAATGATGA+AGG + Chr5:56837943-56837962 None:intergenic 35.0%
AAAATGTGTCAAGTTCTTGG+TGG - Chr5:56839642-56839661 MsG0580027237.01.T01:intron 35.0%
AAACTCAGTCTTCATGTTGA+GGG - Chr5:56840367-56840386 MsG0580027237.01.T01:intron 35.0%
AAAGTGAAAATCACACCTTG+AGG + Chr5:56835177-56835196 None:intergenic 35.0%
AAGCTTCTTCATGTTTATGG+TGG - Chr5:56836073-56836092 MsG0580027237.01.T01:intron 35.0%
ACACCTTCCTAAAAGTAAGT+TGG - Chr5:56835281-56835300 MsG0580027237.01.T01:intron 35.0%
ACATACCTTCTGCAATATCA+TGG + Chr5:56839050-56839069 None:intergenic 35.0%
AGGAAGCTTCTTCATGTTTA+TGG - Chr5:56836070-56836089 MsG0580027237.01.T01:intron 35.0%
ATACAAAGACATCTCACATC+AGG - Chr5:56835838-56835857 MsG0580027237.01.T01:intron 35.0%
ATGGTCATAGAAATGCTCAA+CGG + Chr5:56835011-56835030 None:intergenic 35.0%
ATTTCCTTCATCATTAGAGG+TGG - Chr5:56837936-56837955 MsG0580027237.01.T01:intron 35.0%
CAAGGCAGTAATTAGGAAAA+TGG - Chr5:56840126-56840145 MsG0580027237.01.T01:intron 35.0%
CACCTTCATAAAAAGTAGTG+TGG - Chr5:56835132-56835151 MsG0580027237.01.T01:intron 35.0%
CACTCCCACATAAAAATTAG+TGG + Chr5:56836995-56837014 None:intergenic 35.0%
GATTGACTAAGGTCCAAATA+AGG + Chr5:56840935-56840954 None:intergenic 35.0%
GCTTCACGTTTATAGTTCAA+AGG - Chr5:56836050-56836069 MsG0580027237.01.T01:intron 35.0%
GGGTTAATCATGGGATTAAA+GGG - Chr5:56838839-56838858 MsG0580027237.01.T01:intron 35.0%
GGTATCATATTTATCCAACG+GGG + Chr5:56834338-56834357 None:intergenic 35.0%
GGTTAATCATGGGATTAAAG+GGG - Chr5:56838840-56838859 MsG0580027237.01.T01:intron 35.0%
TATGAAAATTGGAGACCTTC+TGG - Chr5:56840575-56840594 MsG0580027237.01.T01:intron 35.0%
TCAACATGAAGACTGAGTTT+GGG + Chr5:56840367-56840386 None:intergenic 35.0%
TCAATCAGATAAGGGATGAA+TGG + Chr5:56838775-56838794 None:intergenic 35.0%
TCAGTACTATCACCTCTAAA+AGG - Chr5:56840092-56840111 MsG0580027237.01.T01:intron 35.0%
TCTGAAAAAAGAGATTGGAC+CGG - Chr5:56839303-56839322 MsG0580027237.01.T01:intron 35.0%
TGAAATGATTCTACAAGCAC+TGG - Chr5:56840629-56840648 MsG0580027237.01.T01:intron 35.0%
TGATAAAAGACACCACCAAA+GGG - Chr5:56836849-56836868 MsG0580027237.01.T01:intron 35.0%
TGATAAAAGACACCACCAAA+TGG + Chr5:56836868-56836849 None:intergenic 35.0%
TGGGTTAATCATGGGATTAA+AGG - Chr5:56838838-56838857 MsG0580027237.01.T01:intron 35.0%
TTATGTTACAAGCCACCATT+TGG - Chr5:56835362-56835381 MsG0580027237.01.T01:intron 35.0%
TTGAAGCATGCTTGTCTTTA+TGG + Chr5:56835926-56835945 None:intergenic 35.0%
TTGATAAAAGACACCACCAA+AGG - Chr5:56836848-56836867 MsG0580027237.01.T01:intron 35.0%
! AACGATTATCAAAGCACTCT+AGG + Chr5:56839147-56839166 None:intergenic 35.0%
! ATAGAAGACACCTTTTGTGA+AGG + Chr5:56836660-56836679 None:intergenic 35.0%
! ATGCTTTAACTTCCAGAACA+TGG + Chr5:56835777-56835796 None:intergenic 35.0%
! ATTATCAAAGCACTCTAGGT+AGG + Chr5:56839143-56839162 None:intergenic 35.0%
! ATTTTCTTCCTCAAGTAGAG+TGG + Chr5:56837890-56837909 None:intergenic 35.0%
! CACACCCACTAATTTTTATG+TGG - Chr5:56836987-56837006 MsG0580027237.01.T01:intron 35.0%
! CATTGACAAGCTTTTATTGC+TGG + Chr5:56840339-56840358 None:intergenic 35.0%
! GACTGTTCATTTTCATCCAA+TGG - Chr5:56836448-56836467 MsG0580027237.01.T01:CDS 35.0%
! GATTGATTCTAGGGAAGTTT+AGG + Chr5:56840194-56840213 None:intergenic 35.0%
! TACCGATTGTGTTAAGTTCA+CGG + Chr5:56837772-56837791 None:intergenic 35.0%
! TATACATATAGGGGTTTGCT+AGG + Chr5:56837253-56837272 None:intergenic 35.0%
! TTCATCATTAGAGGTGGTTT+TGG - Chr5:56837942-56837961 MsG0580027237.01.T01:intron 35.0%
! TTTTAGCAAGCTACACCTTA+GGG - Chr5:56837015-56837034 MsG0580027237.01.T01:intron 35.0%
! TTTTATCAAGTCACACCTCA+AGG - Chr5:56835159-56835178 MsG0580027237.01.T01:intron 35.0%
! TTTTCCTAATTACTGCCTTG+AGG + Chr5:56840126-56840145 None:intergenic 35.0%
!! ACAAGCACTGGAATATGAAA+TGG - Chr5:56840641-56840660 MsG0580027237.01.T01:intron 35.0%
!! ACACCAACTTACTTTTAGGA+AGG + Chr5:56835287-56835306 None:intergenic 35.0%
!! AGAGGAAGTGTTATAATGAG+AGG - Chr5:56835609-56835628 MsG0580027237.01.T01:intron 35.0%
!! ATTCATTGAATGACGGATGT+AGG - Chr5:56839234-56839253 MsG0580027237.01.T01:intron 35.0%
!! CAAGCACTGGAATATGAAAT+GGG - Chr5:56840642-56840661 MsG0580027237.01.T01:intron 35.0%
!! GAAGACACCAACTTACTTTT+AGG + Chr5:56835291-56835310 None:intergenic 35.0%
!! GAGGAAGTGTTATAATGAGA+GGG - Chr5:56835610-56835629 MsG0580027237.01.T01:intron 35.0%
!!! AACAATGCACGTGACTTTTT+TGG + Chr5:56836408-56836427 None:intergenic 35.0%
!!! ACTCAACACATTGCTTTTTC+CGG - Chr5:56839432-56839451 MsG0580027237.01.T01:intron 35.0%
!!! CACCACACTACTTTTTATGA+AGG + Chr5:56835137-56835156 None:intergenic 35.0%
AAAATCGATAGCAGAAGAGG+AGG + Chr5:56838697-56838716 None:intergenic 40.0%
AAACAAAATGACGATACGCG+TGG + Chr5:56840404-56840423 None:intergenic 40.0%
AACCTTTCTCTACTCAATCC+AGG + Chr5:56838928-56838947 None:intergenic 40.0%
AACTTGCGTATACCATGTTC+TGG - Chr5:56835762-56835781 MsG0580027237.01.T01:intron 40.0%
ACAACAGATCCTTCTGTGTT+AGG + Chr5:56839875-56839894 None:intergenic 40.0%
ACCGATTGTGTTAAGTTCAC+GGG + Chr5:56837771-56837790 None:intergenic 40.0%
ACTGTATGTGTTCCAAGTAG+GGG + Chr5:56834944-56834963 None:intergenic 40.0%
AGAAGTAGGAGGAAGAAGAA+AGG - Chr5:56836358-56836377 MsG0580027237.01.T01:intron 40.0%
AGACAACTAAGCAACAGTTC+AGG + Chr5:56839399-56839418 None:intergenic 40.0%
AGACTGTATGTGTTCCAAGT+AGG + Chr5:56834946-56834965 None:intergenic 40.0%
ATCATATTTATCCAACGGGG+CGG + Chr5:56834335-56834354 None:intergenic 40.0%
ATCCTTCTGTGTTAGGTACT+AGG + Chr5:56839868-56839887 None:intergenic 40.0%
ATGAATACCTCAATACCCAC+GGG + Chr5:56834403-56834422 None:intergenic 40.0%
ATTGTACATTGTGCAGAGCA+TGG - Chr5:56840833-56840852 MsG0580027237.01.T01:intron 40.0%
CAAACTCAGTCTTCATGTTG+AGG - Chr5:56840366-56840385 MsG0580027237.01.T01:intron 40.0%
CATGAATACCTCAATACCCA+CGG + Chr5:56834404-56834423 None:intergenic 40.0%
CTCAACATGAAGACTGAGTT+TGG + Chr5:56840368-56840387 None:intergenic 40.0%
CTCATTGCTTCTGATATTCC+TGG - Chr5:56838907-56838926 MsG0580027237.01.T01:intron 40.0%
CTCTTCCAAAGTGACTTTGT+TGG - Chr5:56840164-56840183 MsG0580027237.01.T01:intron 40.0%
GAAAGAGACGAAGAAGTGAA+GGG + Chr5:56835742-56835761 None:intergenic 40.0%
GAAGTAGGAGGAAGAAGAAA+GGG - Chr5:56836359-56836378 MsG0580027237.01.T01:intron 40.0%
GACTGTATGTGTTCCAAGTA+GGG + Chr5:56834945-56834964 None:intergenic 40.0%
GAGAAAATCGATAGCAGAAG+AGG + Chr5:56838700-56838719 None:intergenic 40.0%
GCAATTAGAAAGCAACCAGA+AGG + Chr5:56840593-56840612 None:intergenic 40.0%
GGAGATATAACACCATCTGA+TGG - Chr5:56839573-56839592 MsG0580027237.01.T01:intron 40.0%
GGATGGACAATAACAACCAA+GGG + Chr5:56834969-56834988 None:intergenic 40.0%
GGTTGTTAACGAGGAATCTT+AGG - Chr5:56834656-56834675 MsG0580027237.01.T01:CDS 40.0%
GTATTGTGTAGACCACAAAG+AGG - Chr5:56838809-56838828 MsG0580027237.01.T01:intron 40.0%
GTTAACGAGGAATCTTAGGT+AGG - Chr5:56834660-56834679 MsG0580027237.01.T01:intron 40.0%
TAAAAGACACCACCAAATGG+TGG + Chr5:56835377-56835396 None:intergenic 40.0%
TACCTAGTACCTAACACAGA+AGG - Chr5:56839863-56839882 MsG0580027237.01.T01:intron 40.0%
TAGGGGATGTATCAAATGAG+AGG - Chr5:56835591-56835610 MsG0580027237.01.T01:intron 40.0%
TAGTTGCGGAGAAGAACAAA+GGG + Chr5:56838594-56838613 None:intergenic 40.0%
TCAAAGCCATACGGTACATA+TGG + Chr5:56838882-56838901 None:intergenic 40.0%
TGAAAGAGACGAAGAAGTGA+AGG + Chr5:56835743-56835762 None:intergenic 40.0%
TGAGTGACATCAAAGCCATA+CGG + Chr5:56838891-56838910 None:intergenic 40.0%
TGGAAGAGGAAAGTAGCATT+GGG + Chr5:56840152-56840171 None:intergenic 40.0%
TGGATGGACAATAACAACCA+AGG + Chr5:56834970-56834989 None:intergenic 40.0%
TGTTATAATGAGAGGGTGAG+AGG - Chr5:56835617-56835636 MsG0580027237.01.T01:intron 40.0%
TTAAAGCTTCCTGCTCCATT+CGG + Chr5:56839620-56839639 None:intergenic 40.0%
TTATGTTACAAGCCACCCTT+TGG + Chr5:56836867-56836886 None:intergenic 40.0%
TTCCTGGATTGAGTAGAGAA+AGG - Chr5:56838923-56838942 MsG0580027237.01.T01:intron 40.0%
TTGGAAGAGGAAAGTAGCAT+TGG + Chr5:56840153-56840172 None:intergenic 40.0%
TTTGATTGTACCCATACCCA+CGG + Chr5:56834786-56834805 None:intergenic 40.0%
! AGCTTCAAAGGGCATATCAT+AGG + Chr5:56836005-56836024 None:intergenic 40.0%
! CAACAAAGTCACTTTGGAAG+AGG + Chr5:56840166-56840185 None:intergenic 40.0%
! GGAACTTTAATCTAGGGTGT+TGG - Chr5:56836248-56836267 MsG0580027237.01.T01:CDS 40.0%
! TGATAGTGAGAGAGAGAAGT+AGG - Chr5:56836344-56836363 MsG0580027237.01.T01:intron 40.0%
!! AGGAAAGGATGGGTTAATCA+TGG - Chr5:56838829-56838848 MsG0580027237.01.T01:intron 40.0%
!! AGTTGGTGTCTTTTCGCAAA+AGG - Chr5:56835469-56835488 MsG0580027237.01.T01:CDS 40.0%
!! GGAAAGGATGGGTTAATCAT+GGG - Chr5:56838830-56838849 MsG0580027237.01.T01:intron 40.0%
!! GGTGGAAGACTAAGTTGATA+AGG - Chr5:56836091-56836110 MsG0580027237.01.T01:intron 40.0%
!! GTGGGTATTGAGGTATTCAT+GGG - Chr5:56834403-56834422 MsG0580027237.01.T01:CDS 40.0%
!! GTTTTAGCAAGCTACACCTT+AGG - Chr5:56837014-56837033 MsG0580027237.01.T01:intron 40.0%
!! TGATATGCCCTTTGAAGCTA+TGG - Chr5:56836006-56836025 MsG0580027237.01.T01:intron 40.0%
!!! ATGCACGTGACTTTTTTGGT+TGG + Chr5:56836404-56836423 None:intergenic 40.0%
!!! CATTGCTTTTTCCGGTGTAT+AGG - Chr5:56839440-56839459 MsG0580027237.01.T01:intron 40.0%
AAAATGACGATACGCGTGGA+AGG + Chr5:56840400-56840419 None:intergenic 45.0%
AAATGACGATACGCGTGGAA+GGG + Chr5:56840399-56840418 None:intergenic 45.0%
AACAACAACACGACGACACA+AGG + Chr5:56838384-56838403 None:intergenic 45.0%
AACCCATCCTTTCCTCTTTG+TGG + Chr5:56838824-56838843 None:intergenic 45.0%
ACGGTACATATGGTCAGCTA+TGG + Chr5:56838872-56838891 None:intergenic 45.0%
AGACCACAAAGAGGAAAGGA+TGG - Chr5:56838818-56838837 MsG0580027237.01.T01:intron 45.0%
AGCTGACCATATGTACCGTA+TGG - Chr5:56838873-56838892 MsG0580027237.01.T01:intron 45.0%
ATGTGTCAAGTTCTTGGTGG+AGG - Chr5:56839645-56839664 MsG0580027237.01.T01:intron 45.0%
CACAGCACAGAAGAAAGCAA+AGG + Chr5:56839003-56839022 None:intergenic 45.0%
CACCACTGCATCATCATCAT+CGG - Chr5:56838544-56838563 MsG0580027237.01.T01:intron 45.0%
CATACTCCAACCACAGTTCT+TGG + Chr5:56839784-56839803 None:intergenic 45.0%
CCCCGTGAACTTAACACAAT+CGG - Chr5:56837767-56837786 MsG0580027237.01.T01:intron 45.0%
CCGATTGTGTTAAGTTCACG+GGG + Chr5:56837770-56837789 None:intergenic 45.0%
CTAATTACTGCCTTGAGGAC+AGG + Chr5:56840121-56840140 None:intergenic 45.0%
CTCGTCCATGATATTGCAGA+AGG - Chr5:56839042-56839061 MsG0580027237.01.T01:intron 45.0%
CTGATGAGATCCAAGAACTG+TGG - Chr5:56839771-56839790 MsG0580027237.01.T01:intron 45.0%
CTGTCCTCAAGGCAGTAATT+AGG - Chr5:56840119-56840138 MsG0580027237.01.T01:intron 45.0%
GACCACAAAGAGGAAAGGAT+GGG - Chr5:56838819-56838838 MsG0580027237.01.T01:intron 45.0%
GCCAAATTTCAAAGCTCCGA+CGG + Chr5:56839709-56839728 None:intergenic 45.0%
GCTAGCCAACAAAGTCACTT+TGG + Chr5:56840172-56840191 None:intergenic 45.0%
GGAACAGACGATTGTTTGTC+TGG + Chr5:56835905-56835924 None:intergenic 45.0%
GTAGTTGCGGAGAAGAACAA+AGG + Chr5:56838595-56838614 None:intergenic 45.0%
GTATCCACGGGTATAGTCAA+CGG + Chr5:56834848-56834867 None:intergenic 45.0%
GTGAGAGGGTTCATGTTTCT+GGG + Chr5:56838646-56838665 None:intergenic 45.0%
GTGTAGACCACAAAGAGGAA+AGG - Chr5:56838814-56838833 MsG0580027237.01.T01:intron 45.0%
TAAAAGACACCACCAAAGGG+TGG - Chr5:56836852-56836871 MsG0580027237.01.T01:intron 45.0%
TAAGGCTGAAAAGAGCCGAA+TGG - Chr5:56839602-56839621 MsG0580027237.01.T01:intron 45.0%
TAGTGAGAGAGAGAAGTAGG+AGG - Chr5:56836347-56836366 MsG0580027237.01.T01:intron 45.0%
TATCCACGGGTATAGTCAAC+GGG + Chr5:56834847-56834866 None:intergenic 45.0%
TCATATTTATCCAACGGGGC+GGG + Chr5:56834334-56834353 None:intergenic 45.0%
TCTAGTCACCACTCTACTTG+AGG - Chr5:56837879-56837898 MsG0580027237.01.T01:intron 45.0%
TGAGATCCAAGAACTGTGGT+TGG - Chr5:56839775-56839794 MsG0580027237.01.T01:intron 45.0%
TGTGAGAGGGTTCATGTTTC+TGG + Chr5:56838647-56838666 None:intergenic 45.0%
TGTGTCAAGTTCTTGGTGGA+GGG - Chr5:56839646-56839665 MsG0580027237.01.T01:intron 45.0%
TGTTACAAGCCACCATTTGG+TGG - Chr5:56835365-56835384 MsG0580027237.01.T01:intron 45.0%
TTGATTGTACCCATACCCAC+GGG + Chr5:56834785-56834804 None:intergenic 45.0%
! AAGTGAGGTGTTCGAGGTTT+AGG + Chr5:56837835-56837854 None:intergenic 45.0%
! ATTCGGCTCTTTTCAGCCTT+AGG + Chr5:56839603-56839622 None:intergenic 45.0%
! TGCAGAGCATGGAAAAGTAC+TGG - Chr5:56840844-56840863 MsG0580027237.01.T01:intron 45.0%
!! CGTGGGTATTGAGGTATTCA+TGG - Chr5:56834402-56834421 MsG0580027237.01.T01:CDS 45.0%
!! GTATTTTTGCCACCCCTACT+TGG - Chr5:56834929-56834948 MsG0580027237.01.T01:intron 45.0%
!! TAAAAGGTGTCCTGTCCTCA+AGG - Chr5:56840108-56840127 MsG0580027237.01.T01:intron 45.0%
!! TCCGTCGGAGCTTTGAAATT+TGG - Chr5:56839705-56839724 MsG0580027237.01.T01:intron 45.0%
!! ATATATATATATATATATAG+GGG - Chr5:56835097-56835116 MsG0580027237.01.T01:intron 5.0%
!! ATATATATATATATATATGT+GGG + Chr5:56835510-56835529 None:intergenic 5.0%
!! TAATTATATATATACATATA+GGG + Chr5:56837263-56837282 None:intergenic 5.0%
!! TATATATATATATATATATG+TGG + Chr5:56836550-56836531 None:intergenic 5.0%
!!! TTTATTTTCAATTATAAATA+TGG - Chr5:56838199-56838218 MsG0580027237.01.T01:intron 5.0%
AGTGGGTACACACGAAGGTA+CGG + Chr5:56834371-56834390 None:intergenic 50.0%
ATCGATAGCAGAAGAGGAGG+AGG + Chr5:56838694-56838713 None:intergenic 50.0%
CACTGCATCATCATCATCGG+CGG - Chr5:56838547-56838566 MsG0580027237.01.T01:intron 50.0%
CCCGTGGGTAAAATCCATCA+CGG + Chr5:56834894-56834913 None:intergenic 50.0%
CCGTGGGTAAAATCCATCAC+GGG + Chr5:56834893-56834912 None:intergenic 50.0%
CTACGATGTTTCGCGGTTGA+AGG + Chr5:56840310-56840329 None:intergenic 50.0%
GACAGAGCTACGATGTTTCG+CGG + Chr5:56840317-56840336 None:intergenic 50.0%
GCAAAAATACCCATGCCCAC+GGG + Chr5:56834919-56834938 None:intergenic 50.0%
GGAACACATACAGTCTCCCT+TGG - Chr5:56834950-56834969 MsG0580027237.01.T01:intron 50.0%
GGCAAAAATACCCATGCCCA+CGG + Chr5:56834920-56834939 None:intergenic 50.0%
GGTAAAATCCATCACGGGCA+CGG + Chr5:56834888-56834907 None:intergenic 50.0%
GGTAGCTAAACGGGTATCCA+CGG + Chr5:56834861-56834880 None:intergenic 50.0%
GTAAAATCCATCACGGGCAC+GGG + Chr5:56834887-56834906 None:intergenic 50.0%
GTAGCTAAACGGGTATCCAC+GGG + Chr5:56834860-56834879 None:intergenic 50.0%
GTATGTGTTCCAAGTAGGGG+TGG + Chr5:56834941-56834960 None:intergenic 50.0%
TAAAATCCATCACGGGCACG+GGG + Chr5:56834886-56834905 None:intergenic 50.0%
TAGGAGGAAGAAGAAAGGGC+AGG - Chr5:56836363-56836382 MsG0580027237.01.T01:CDS 50.0%
TGAAAAGAGCCGAATGGAGC+AGG - Chr5:56839608-56839627 MsG0580027237.01.T01:intron 50.0%
TGGGAACGAACCAAAACGAG+AGG + Chr5:56838621-56838640 None:intergenic 50.0%
TGTTACAAGCCACCCTTTGG+TGG + Chr5:56836864-56836883 None:intergenic 50.0%
! AAACGAGAGGAGCGTAGTTG+CGG + Chr5:56838608-56838627 None:intergenic 50.0%
! ACCATCTGATGGTGTGCCTA+AGG - Chr5:56839584-56839603 MsG0580027237.01.T01:intron 50.0%
! ATACCCGTTGACTATACCCG+TGG - Chr5:56834841-56834860 MsG0580027237.01.T01:intron 50.0%
! CAACTACGCTCCTCTCGTTT+TGG - Chr5:56838608-56838627 MsG0580027237.01.T01:intron 50.0%
! GAGAGCATACCTTGAGAGTG+TGG + Chr5:56838731-56838750 None:intergenic 50.0%
! GAGGACAGGACACCTTTTAG+AGG + Chr5:56840107-56840126 None:intergenic 50.0%
! GAGGTATTCATGGGTACCCA+TGG - Chr5:56834412-56834431 MsG0580027237.01.T01:CDS 50.0%
!! AGGGTTCATGTTTCTGGGTC+TGG + Chr5:56838641-56838660 None:intergenic 50.0%
!! GGGTTCATGTTTCTGGGTCT+GGG + Chr5:56838640-56838659 None:intergenic 50.0%
!!! CCCGTGATGGATTTTACCCA+CGG - Chr5:56834890-56834909 MsG0580027237.01.T01:intron 50.0%
!!! CCGTGATGGATTTTACCCAC+GGG - Chr5:56834891-56834910 MsG0580027237.01.T01:intron 50.0%
CACTCTCTGCCACACTCTCA+AGG - Chr5:56838719-56838738 MsG0580027237.01.T01:intron 55.0%
GATAGCAGAAGAGGAGGAGG+AGG + Chr5:56838691-56838710 None:intergenic 55.0%
GCCTTAGGCACACCATCAGA+TGG + Chr5:56839588-56839607 None:intergenic 55.0%
GTATGGGTACCCGTGGGTAT+GGG - Chr5:56834773-56834792 MsG0580027237.01.T01:intron 55.0%
GTTCTTGGTGGAGGGATGAG+AGG - Chr5:56839654-56839673 MsG0580027237.01.T01:intron 55.0%
TATCGGGTATGGGTACCCGT+GGG - Chr5:56834767-56834786 MsG0580027237.01.T01:intron 55.0%
TTATCGGGTATGGGTACCCG+TGG - Chr5:56834766-56834785 MsG0580027237.01.T01:intron 55.0%
! ATTTTACCCACGGGTACCCG+TGG - Chr5:56834900-56834919 MsG0580027237.01.T01:intron 55.0%
! CGCCGATGATGATGATGCAG+TGG + Chr5:56838549-56838568 None:intergenic 55.0%
! GTGGAGAAGTGAGGTGTTCG+AGG + Chr5:56837841-56837860 None:intergenic 55.0%
! GTGGGTACACACGAAGGTAC+GGG + Chr5:56834370-56834389 None:intergenic 55.0%
! TGGGTACACACGAAGGTACG+GGG + Chr5:56834369-56834388 None:intergenic 55.0%
! TTTTACCCACGGGTACCCGT+GGG - Chr5:56834901-56834920 MsG0580027237.01.T01:intron 55.0%
AGAAGAGGAGGAGGAGGAGG+AGG + Chr5:56838685-56838704 None:intergenic 60.0%
AGCAGAAGAGGAGGAGGAGG+AGG + Chr5:56838688-56838707 None:intergenic 60.0%
CGCACAGTGGGTACACACGA+AGG + Chr5:56834376-56834395 None:intergenic 60.0%
CGCGCAATTGAGCGAGTGAG+AGG + Chr5:56839078-56839097 None:intergenic 60.0%
GGTATGGGTACCCGTGGGTA+TGG - Chr5:56834772-56834791 MsG0580027237.01.T01:intron 60.0%
TTTATCCAACGGGGCGGGCA+CGG + Chr5:56834329-56834348 None:intergenic 60.0%
! ACGAAGAAGTGAAGGGCGCG+TGG + Chr5:56835735-56835754 None:intergenic 60.0%
! GAGGAGGAGGAGGTGTGAGA+GGG + Chr5:56838660-56838679 None:intergenic 60.0%
! GCGAGTACCCGTGGGTATTG+AGG - Chr5:56834393-56834412 MsG0580027237.01.T01:CDS 60.0%
! GTACACACGAAGGTACGGGG+CGG + Chr5:56834366-56834385 None:intergenic 60.0%
AATCCATCACGGGCACGGGG+CGG + Chr5:56834883-56834902 None:intergenic 65.0%
ACCCACGGGTACTCGCACAG+TGG + Chr5:56834389-56834408 None:intergenic 65.0%
ACCCACTGTGCGAGTACCCG+TGG - Chr5:56834384-56834403 MsG0580027237.01.T01:CDS 65.0%
AGAGGAGGAGGAGGAGGAGG+AGG + Chr5:56838682-56838701 None:intergenic 65.0%
CACGGGGCGGGTAGCTAAAC+GGG + Chr5:56834870-56834889 None:intergenic 65.0%
CCCACGGGTACTCGCACAGT+GGG + Chr5:56834388-56834407 None:intergenic 65.0%
CCCACTGTGCGAGTACCCGT+GGG - Chr5:56834385-56834404 MsG0580027237.01.T01:CDS 65.0%
GCACGGGGCGGGTAGCTAAA+CGG + Chr5:56834871-56834890 None:intergenic 65.0%
! GGAGGAGGAGGAGGTGTGAG+AGG + Chr5:56838661-56838680 None:intergenic 65.0%
ATCCATCACGGGCACGGGGC+GGG + Chr5:56834882-56834901 None:intergenic 70.0%
CCACGGGTACCCGTGGGCAT+GGG - Chr5:56834907-56834926 MsG0580027237.01.T01:intron 70.0%
CCATGCCCACGGGTACCCGT+GGG + Chr5:56834909-56834928 None:intergenic 70.0%
GATATCCGTGCCCGCCCCGT+TGG - Chr5:56834321-56834340 MsG0580027237.01.T01:CDS 70.0%
GGAGGAGGAGGAGGAGGAGG+AGG + Chr5:56838667-56838686 None:intergenic 70.0%
! CGAAGGTACGGGGCGGACAC+AGG + Chr5:56834359-56834378 None:intergenic 70.0%
CCCACGGGTACCCGTGGGCA+TGG - Chr5:56834906-56834925 MsG0580027237.01.T01:intron 75.0%
CCCATGCCCACGGGTACCCG+TGG + Chr5:56834910-56834929 None:intergenic 75.0%
TACCCGCCCCGTGCCCGTGA+TGG - Chr5:56834877-56834896 MsG0580027237.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr5 gene 56834304 56841000 56834304 ID=MsG0580027237.01;Name=MsG0580027237.01
Chr5 mRNA 56834304 56841000 56834304 ID=MsG0580027237.01.T01;Parent=MsG0580027237.01;Name=MsG0580027237.01.T01;_AED=0.54;_eAED=0.63;_QI=0|0.66|0.57|0.85|1|1|7|0|222
Chr5 exon 56840890 56841000 56840890 ID=MsG0580027237.01.T01:exon:12805;Parent=MsG0580027237.01.T01
Chr5 exon 56836360 56836484 56836360 ID=MsG0580027237.01.T01:exon:12804;Parent=MsG0580027237.01.T01
Chr5 exon 56836241 56836278 56836241 ID=MsG0580027237.01.T01:exon:12803;Parent=MsG0580027237.01.T01
Chr5 exon 56835629 56835754 56835629 ID=MsG0580027237.01.T01:exon:12802;Parent=MsG0580027237.01.T01
Chr5 exon 56835454 56835533 56835454 ID=MsG0580027237.01.T01:exon:12801;Parent=MsG0580027237.01.T01
Chr5 exon 56834641 56834677 56834641 ID=MsG0580027237.01.T01:exon:12800;Parent=MsG0580027237.01.T01
Chr5 exon 56834304 56834455 56834304 ID=MsG0580027237.01.T01:exon:12799;Parent=MsG0580027237.01.T01
Chr5 CDS 56840890 56841000 56840890 ID=MsG0580027237.01.T01:cds;Parent=MsG0580027237.01.T01
Chr5 CDS 56836360 56836484 56836360 ID=MsG0580027237.01.T01:cds;Parent=MsG0580027237.01.T01
Chr5 CDS 56836241 56836278 56836241 ID=MsG0580027237.01.T01:cds;Parent=MsG0580027237.01.T01
Chr5 CDS 56835629 56835754 56835629 ID=MsG0580027237.01.T01:cds;Parent=MsG0580027237.01.T01
Chr5 CDS 56835454 56835533 56835454 ID=MsG0580027237.01.T01:cds;Parent=MsG0580027237.01.T01
Chr5 CDS 56834641 56834677 56834641 ID=MsG0580027237.01.T01:cds;Parent=MsG0580027237.01.T01
Chr5 CDS 56834304 56834455 56834304 ID=MsG0580027237.01.T01:cds;Parent=MsG0580027237.01.T01
Gene Sequence

>MsG0580027237.01.T01

ATGGATACGGATAATATGATATCCGTGCCCGCCCCGTTGGATAAATATGATACCTGTGTCCGCCCCGTACCTTCGTGTGTACCCACTGTGCGAGTACCCGTGGGTATTGAGACCACAAAGAGGAAAGGATGGGTTAATCATGGGATTAAAGGGGCTGAATCCATAGCTGACCATATGTACCGTATGGCTTTGATGTCACTCATTGCTTCTGATATTCCTGGATTGAGTAGAGAAAGATGTATTAAAATTGCTCTCGTCCATGATATTGCAGAAGTGTTATACTCAATAGCTATTGTAGGAGATATAACACCATCTGATGGTGTGCCTAAGGCTGAAAAGAGCCGAATGGAGCAGGAAGCTTTAAACAAAATGTGTCAAGTTCTTGGTGGAGGGATGAGAGCTGATGAGATCCAAGAACTGTGGTTGGAGTATGAAAACAATTCTTCTTTAGAAGCTAATGTTGTAAAAGATTTTGACAAGGTTGAAATGATTCTACAAGCACTGGAATATGAAATGGAGCATGGAAAAGTACTGGATGAATTTTTCATTTCAACTGCAGGTAGAATTGAAACTTCTCTTCTACAGATGAAATGCATGAATCCTTATTTGGACCTTAGTCAATCACATAATTTTTTGTTTTGTATTCAGGGAAGTTCCAAACTGAAATAG
Protein sequence

>MsG0580027237.01.T01

MDTDNMISVPAPLDKYDTCVRPVPSCVPTVRVPVGIETTKRKGWVNHGIKGAESIADHMYRMALMSLIASDIPGLSRERCIKIALVHDIAEVLYSIAIVGDITPSDGVPKAEKSRMEQEALNKMCQVLGGGMRADEIQELWLEYENNSSLEANVVKDFDKVEMILQALEYEMEHGKVLDEFFISTAGRIETSLLQMKCMNPYLDLSQSHNFLFCIQGSSKLK*