AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027314.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027314.01.T01 MTR_3g015130 98.324 179 3 0 53 231 1 179 5.33e-128 359
MsG0580027314.01.T01 MTR_4g123000 96.648 179 6 0 53 231 1 179 4.78e-126 354
MsG0580027314.01.T01 MTR_6g027990 74.510 51 13 0 129 179 36 86 2.85e-18 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027314.01.T01 AT1G54140 65.934 182 54 2 56 230 3 183 3.10e-74 223

Find 81 sgRNAs with CRISPR-Local

Find 457 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCCCTAGTCAAATTTCT+AGG 0.229100 5:+58270538 MsG0580027314.01.T01:three_prime_UTR
TCATCCTCGGTTTCTTCTAT+AGG 0.245049 5:-58270155 None:intergenic
TAGGCGATGGTTGTAATAAA+AGG 0.338136 5:+58270321 MsG0580027314.01.T01:three_prime_UTR
GGATTTGAAATCAATCCTTT+TGG 0.339035 5:-58270274 None:intergenic
TTCTCTTCTTGAGACGGGTT+GGG 0.349426 5:-58270197 None:intergenic
CTTCTCTTCTTGAGACGGGT+TGG 0.375543 5:-58270198 None:intergenic
TGCACAATCTTTGCATCCCT+TGG 0.390884 5:-58268297 None:intergenic
ACATCATCAACATCAATTGC+AGG 0.392863 5:-58268450 None:intergenic
AATAAAGCCTCAGTGACATA+TGG 0.407940 5:-58270296 None:intergenic
CTGTCTTCTCTTCTTGAGAC+GGG 0.409537 5:-58270202 None:intergenic
GCAGTCTTTGTTGAAATCAA+TGG 0.422201 5:+58268317 MsG0580027314.01.T01:CDS
TTTAAATCCCCATGTTGAAA+TGG 0.429439 5:-58264699 None:intergenic
GTCACTGAGGCTTTATTAGT+AGG 0.430722 5:+58270302 MsG0580027314.01.T01:three_prime_UTR
GCTTGGTCATCTTTGATCCT+AGG 0.430851 5:+58264786 MsG0580027314.01.T01:CDS
CCAAAGTCTATAGCAGGGCC+TGG 0.446628 5:+58270053 MsG0580027314.01.T01:CDS
TCCCCTGCCTAAACGCCAAA+AGG 0.448533 5:+58270259 MsG0580027314.01.T01:CDS
ATCATAACACTAATGCTTGA+AGG 0.453003 5:+58264662 None:intergenic
GACGGGTTGGGATCAGCATT+GGG 0.453169 5:-58270185 None:intergenic
GCAATCAATGTGTCCTGATC+GGG 0.454600 5:-58270089 None:intergenic
AGACGGGTTGGGATCAGCAT+TGG 0.455142 5:-58270186 None:intergenic
TCTGTCTTCTCTTCTTGAGA+CGG 0.455504 5:-58270203 None:intergenic
TTTCCTCTTGACTCATCGGT+TGG 0.466512 5:+58264751 MsG0580027314.01.T01:CDS
GGAATTGCGAACTGGTAGTT+GGG 0.471146 5:-58270113 None:intergenic
GTTTCCACTTCCACCCGATC+AGG 0.473279 5:+58270076 MsG0580027314.01.T01:CDS
ATTGGGAACTTCTTCATCCT+CGG 0.476115 5:-58270168 None:intergenic
CCAGGCCCTGCTATAGACTT+TGG 0.478355 5:-58270053 None:intergenic
ATAATTTCCTCTTGACTCAT+CGG 0.478939 5:+58264747 MsG0580027314.01.T01:CDS
TTGCAGTGGGATAACTTCTA+TGG 0.484043 5:+58268248 MsG0580027314.01.T01:CDS
CAGCATGCTCTGAATACACC+TGG 0.484633 5:-58268422 None:intergenic
GGGGAAAGGACACTCTTTGA+TGG 0.487992 5:-58270241 None:intergenic
CAGTCTTTGTTGAAATCAAT+GGG 0.492657 5:+58268318 MsG0580027314.01.T01:CDS
TGGAATTGCGAACTGGTAGT+TGG 0.494497 5:-58270114 None:intergenic
CAAAGTCTATAGCAGGGCCT+GGG 0.507554 5:+58270054 MsG0580027314.01.T01:CDS
GTGTCCTGATCGGGTGGAAG+TGG 0.509015 5:-58270080 None:intergenic
GTTCCCTAGTCAAATTTCTA+GGG 0.509217 5:+58270539 MsG0580027314.01.T01:three_prime_UTR
CCATTGCCAAAGTCTATAGC+AGG 0.509326 5:+58270047 MsG0580027314.01.T01:CDS
AACTTCTATGGCTGATAATG+AGG 0.509441 5:+58268260 MsG0580027314.01.T01:CDS
ATAAAGCCTCAGTGACATAT+GGG 0.515504 5:-58270295 None:intergenic
AGTTCGCAATTCCAAACAAA+AGG 0.527607 5:+58270123 MsG0580027314.01.T01:CDS
TAAACAAGTTCCTTGAGCTA+TGG 0.532540 5:+58268367 MsG0580027314.01.T01:CDS
AATAGCAATGAATCACCAGC+AGG 0.532876 5:-58270369 None:intergenic
GCGAGAAGCTGAAGTTGACC+TGG 0.535925 5:-58268491 None:intergenic
GAAGTTGACCTGGGATTGAA+TGG 0.538339 5:-58268481 None:intergenic
CCCTAGTCAAATTTCTAGGG+AGG 0.542058 5:+58270542 MsG0580027314.01.T01:three_prime_UTR
GGTACATCGATCACCCCTGC+TGG 0.545910 5:+58270354 MsG0580027314.01.T01:three_prime_UTR
TTCGAAATCCATTTCAACAT+GGG 0.546883 5:+58264691 MsG0580027314.01.T01:CDS
CTTCGAAATCCATTTCAACA+TGG 0.547053 5:+58264690 MsG0580027314.01.T01:CDS
GTTGGATAAGTGCATGAGCT+TGG 0.552607 5:+58264769 MsG0580027314.01.T01:CDS
TTTGTTGAAATCAATGGGTG+TGG 0.553986 5:+58268323 MsG0580027314.01.T01:CDS
GGGAAAGGACACTCTTTGAT+GGG 0.556936 5:-58270240 None:intergenic
TGATGTTGATGATGTTAAGC+TGG 0.558883 5:+58268458 MsG0580027314.01.T01:CDS
TTGGCGTTTAGGCAGGGGAA+AGG 0.562284 5:-58270255 None:intergenic
AGCAATCAATGTGTCCTGAT+CGG 0.568815 5:-58270090 None:intergenic
TGATGTGTTAACAGATGCCC+AGG 0.577851 5:+58268404 MsG0580027314.01.T01:CDS
TCGAAATCCATTTCAACATG+GGG 0.578917 5:+58264692 MsG0580027314.01.T01:CDS
TAAGCTGGCCATTCAATCCC+AGG 0.581196 5:+58268473 MsG0580027314.01.T01:CDS
CCTCCCTAGAAATTTGACTA+GGG 0.583004 5:-58270542 None:intergenic
ACCTCCCTAGAAATTTGACT+AGG 0.584740 5:-58270543 None:intergenic
ATCAATGTGTCCTGATCGGG+TGG 0.588089 5:-58270086 None:intergenic
CATGGGTGCAGTGATTGCAG+TGG 0.588353 5:+58268234 MsG0580027314.01.T01:intron
GAGGCTTTATTAGTAGGCGA+TGG 0.599601 5:+58270308 MsG0580027314.01.T01:three_prime_UTR
CAGGTGTATTCAGAGCATGC+TGG 0.605392 5:+58268423 MsG0580027314.01.T01:CDS
TTTGCTGAAAGCTGAGAGTG+AGG 0.605997 5:-58270500 None:intergenic
AGGAAGACTCGAATATGCCA+AGG 0.607648 5:+58268280 MsG0580027314.01.T01:CDS
CGAGAAGCTGAAGTTGACCT+GGG 0.614371 5:-58268490 None:intergenic
TGAGCTATGGTATCGCTATG+TGG 0.621181 5:+58268380 MsG0580027314.01.T01:CDS
ATGGGTGCAGTGATTGCAGT+GGG 0.621458 5:+58268235 MsG0580027314.01.T01:intron
TGAAAGCTGAGAGTGAGGAT+AGG 0.628549 5:-58270495 None:intergenic
TCGGGTGGAAGTGGAAACCC+AGG 0.633441 5:-58270071 None:intergenic
TATCCAACCGATGAGTCAAG+AGG 0.634605 5:-58264754 None:intergenic
CATAGCGATACCATAGCTCA+AGG 0.639257 5:-58268377 None:intergenic
TAGCAATGAATCACCAGCAG+GGG 0.647523 5:-58270367 None:intergenic
AGGAACTTGTTTATAACACG+AGG 0.647916 5:-58268357 None:intergenic
CCTGCTATAGACTTTGGCAA+TGG 0.651706 5:-58270047 None:intergenic
GGAAAGGACACTCTTTGATG+GGG 0.660611 5:-58270239 None:intergenic
ATAGCAATGAATCACCAGCA+GGG 0.665086 5:-58270368 None:intergenic
AGCATGCTCTGAATACACCT+GGG 0.665137 5:-58268421 None:intergenic
CATTGCCAAAGTCTATAGCA+GGG 0.667332 5:+58270048 MsG0580027314.01.T01:CDS
CGAACCTATAGAAGAAACCG+AGG 0.688218 5:+58270151 MsG0580027314.01.T01:CDS
GGAAGACTCGAATATGCCAA+GGG 0.693042 5:+58268281 MsG0580027314.01.T01:CDS
TCAAATCCCATATGTCACTG+AGG 0.711950 5:+58270289 MsG0580027314.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTACAAATATGTTTAATTT+AGG + Chr5:58269582-58269601 MsG0580027314.01.T01:intron 10.0%
!!! ATTACAATTTATTTTAGTTT+AGG - Chr5:58269036-58269055 None:intergenic 10.0%
!!! CAAAAAAAAATTATTTTTAG+TGG - Chr5:58265041-58265060 None:intergenic 10.0%
!!! CTAAAAATAATTTTTTTTTG+TGG + Chr5:58265041-58265060 MsG0580027314.01.T01:intron 10.0%
!!! GAAATTATTTTAAGTTTAAA+AGG + Chr5:58269466-58269485 MsG0580027314.01.T01:intron 10.0%
!!! TACTATTATTTTAATATTAC+TGG + Chr5:58265664-58265683 MsG0580027314.01.T01:intron 10.0%
!!! TGGTTTTAATTTATTTTTTT+TGG - Chr5:58267564-58267583 None:intergenic 10.0%
!!! TTAAAAAAATGGATTTTTAT+AGG - Chr5:58269722-58269741 None:intergenic 10.0%
!!! TTACAAATATGTTTAATTTA+GGG + Chr5:58269583-58269602 MsG0580027314.01.T01:intron 10.0%
!!! TTACAATTTATTTTAGTTTA+GGG - Chr5:58269035-58269054 None:intergenic 10.0%
!!! TTTTCAGTTTTTTTTTTTTT+TGG - Chr5:58265388-58265407 None:intergenic 10.0%
!! AAAAAAAAACTGAAAAAAGA+TGG + Chr5:58265392-58265411 MsG0580027314.01.T01:intron 15.0%
!! AAAAAAAACTGAAAAAAGAT+GGG + Chr5:58265393-58265412 MsG0580027314.01.T01:intron 15.0%
!! AAAAATCAATTAGAAATGAT+TGG - Chr5:58267447-58267466 None:intergenic 15.0%
!! AAGATAAAGTTTATAGTTAA+TGG - Chr5:58265091-58265110 None:intergenic 15.0%
!! AGATAAAGTTTATAGTTAAT+GGG - Chr5:58265090-58265109 None:intergenic 15.0%
!! ATACTTAACCTTAAAATAAT+TGG + Chr5:58266856-58266875 MsG0580027314.01.T01:intron 15.0%
!! ATTTACTAGTAATTGTAATT+AGG + Chr5:58269094-58269113 MsG0580027314.01.T01:intron 15.0%
!! TACTTAACCTTAAAATAATT+GGG + Chr5:58266857-58266876 MsG0580027314.01.T01:intron 15.0%
!! TTACAATTACTAGTAAATTT+AGG - Chr5:58269092-58269111 None:intergenic 15.0%
!!! AAAATTTTAGAGATCTAAAA+GGG + Chr5:58269236-58269255 MsG0580027314.01.T01:intron 15.0%
!!! AAACAAATTTATTTTCAGAA+GGG - Chr5:58265010-58265029 None:intergenic 15.0%
!!! AATATTTTGAGAATATTGAA+GGG + Chr5:58267055-58267074 MsG0580027314.01.T01:intron 15.0%
!!! ATTAAAAACTTTTCAGTTTA+AGG - Chr5:58269121-58269140 None:intergenic 15.0%
!!! ATTTATTTTTTTCAACAACA+TGG - Chr5:58269782-58269801 None:intergenic 15.0%
!!! CGGTTTTAAAAATAAATTTA+TGG - Chr5:58267584-58267603 None:intergenic 15.0%
!!! GAATATTTTTGACAAATATA+GGG + Chr5:58269554-58269573 MsG0580027314.01.T01:intron 15.0%
!!! TAAAATTTTAGAGATCTAAA+AGG + Chr5:58269235-58269254 MsG0580027314.01.T01:intron 15.0%
!!! TAAACTGAAAAGTTTTTAAT+TGG + Chr5:58269121-58269140 MsG0580027314.01.T01:intron 15.0%
!!! TAAGCAAAAGTTAAATTTTT+AGG - Chr5:58266727-58266746 None:intergenic 15.0%
!!! TGAATATTTTTGACAAATAT+AGG + Chr5:58269553-58269572 MsG0580027314.01.T01:intron 15.0%
!!! TTTAGGTTTAAATATTTTGT+AGG + Chr5:58269008-58269027 MsG0580027314.01.T01:intron 15.0%
!!! TTTATTTTTTTTGGACAAAA+TGG - Chr5:58267555-58267574 None:intergenic 15.0%
!! AAAAAAACTGAAAAAAGATG+GGG + Chr5:58265394-58265413 MsG0580027314.01.T01:intron 20.0%
!! ATCAATTTATCTCAAACAAT+TGG - Chr5:58267637-58267656 None:intergenic 20.0%
!! ATTCAAAATTACATTACTGA+CGG + Chr5:58264885-58264904 MsG0580027314.01.T01:intron 20.0%
!! ATTTATTTGAACATGAAGAA+AGG - Chr5:58266589-58266608 None:intergenic 20.0%
!! CTGTTAAAAAAAAAGGTTTA+AGG - Chr5:58269148-58269167 None:intergenic 20.0%
!! GTTGTTTGTTTATGAAAAAT+TGG - Chr5:58268091-58268110 None:intergenic 20.0%
!! TAAAAAGAACAACAGAAAAT+TGG - Chr5:58265480-58265499 None:intergenic 20.0%
!! TATTATGAATTTAGCATTCA+CGG + Chr5:58266405-58266424 MsG0580027314.01.T01:intron 20.0%
!! TCAAATTATACGATTCAAAT+AGG + Chr5:58267032-58267051 MsG0580027314.01.T01:intron 20.0%
!! TCATACTTAAAGAAAGATTT+AGG - Chr5:58269966-58269985 None:intergenic 20.0%
!! TGAAAAAAAGCTTAAACAAA+CGG + Chr5:58269938-58269957 MsG0580027314.01.T01:intron 20.0%
!! TTTATAACCTCTCTTATATA+AGG - Chr5:58266353-58266372 None:intergenic 20.0%
!!! AACAAATTTATTTTCAGAAG+GGG - Chr5:58265009-58265028 None:intergenic 20.0%
!!! ACAAACTATTTTAAGGTTTA+AGG - Chr5:58269175-58269194 None:intergenic 20.0%
!!! ACGACAAGAATTTTTTAAAT+GGG - Chr5:58268129-58268148 None:intergenic 20.0%
!!! AGATCTCTAAAATTTTAAGA+GGG - Chr5:58269442-58269461 None:intergenic 20.0%
!!! CAAACAAATTTATTTTCAGA+AGG - Chr5:58265011-58265030 None:intergenic 20.0%
!!! CTTCTGAAAATAAATTTGTT+TGG + Chr5:58265009-58265028 MsG0580027314.01.T01:intron 20.0%
!!! GAATATTTTGAGAATATTGA+AGG + Chr5:58267054-58267073 MsG0580027314.01.T01:intron 20.0%
!!! TAAACCTTTTTTTTTAACAG+TGG + Chr5:58269148-58269167 MsG0580027314.01.T01:intron 20.0%
!!! TAGATCTCTAAAATTTTAAG+AGG - Chr5:58269443-58269462 None:intergenic 20.0%
!!! TCATTTGTCTTTTTTTTCAT+GGG + Chr5:58268217-58268236 MsG0580027314.01.T01:intron 20.0%
!!! TTTTTAAGATTCACATGTTT+GGG + Chr5:58268825-58268844 MsG0580027314.01.T01:intron 20.0%
!!! TTTTTTAAGATTCACATGTT+TGG + Chr5:58268824-58268843 MsG0580027314.01.T01:intron 20.0%
! AAAACCATCAATAACATTAC+TGG + Chr5:58265594-58265613 MsG0580027314.01.T01:intron 25.0%
! AAACATTTAATGAGATGTAG+AGG + Chr5:58266966-58266985 MsG0580027314.01.T01:intron 25.0%
! AAAGATTATTTGAAAGTCCA+GGG + Chr5:58269498-58269517 MsG0580027314.01.T01:intron 25.0%
! AAATGAGTGATTGTATTACA+TGG - Chr5:58268203-58268222 None:intergenic 25.0%
! AACTAGAATATTCTTGAAAC+TGG - Chr5:58268064-58268083 None:intergenic 25.0%
! AACTGCATTACTATAAAAGT+TGG - Chr5:58268768-58268787 None:intergenic 25.0%
! AATAGATGCATTTAATCCTT+TGG - Chr5:58268617-58268636 None:intergenic 25.0%
! AATGTTTGTGTTATGAAAGT+TGG - Chr5:58267921-58267940 None:intergenic 25.0%
! ATAAAAAATATTACCTCACG+AGG - Chr5:58268525-58268544 None:intergenic 25.0%
! ATAACACAAACAACATTATG+AGG + Chr5:58267782-58267801 MsG0580027314.01.T01:intron 25.0%
! ATGCAAGATTTATCAATGTT+TGG - Chr5:58267969-58267988 None:intergenic 25.0%
! ATGTTCTGTATCTGATAAAT+AGG - Chr5:58268152-58268171 None:intergenic 25.0%
! ATTATGAATTTAGCATTCAC+GGG + Chr5:58266406-58266425 MsG0580027314.01.T01:intron 25.0%
! CATTCAATAAATGATGTATG+TGG + Chr5:58266664-58266683 MsG0580027314.01.T01:intron 25.0%
! CTAGATTAAGAAAATAGTTC+AGG + Chr5:58269522-58269541 MsG0580027314.01.T01:intron 25.0%
! CTCTTGAAAAGAATAAATGA+AGG - Chr5:58267511-58267530 None:intergenic 25.0%
! GATAAGTAATGAAAGATATC+AGG + Chr5:58266376-58266395 MsG0580027314.01.T01:intron 25.0%
! TAAAAAATATTACCTCACGA+GGG - Chr5:58268524-58268543 None:intergenic 25.0%
! TAAAGATTATTTGAAAGTCC+AGG + Chr5:58269497-58269516 MsG0580027314.01.T01:intron 25.0%
! TATAAAAACTGTACTTGAAC+TGG + Chr5:58266513-58266532 MsG0580027314.01.T01:intron 25.0%
! TATTAATGTCCCTAAATTCA+AGG - Chr5:58269206-58269225 None:intergenic 25.0%
! TCCTAAAATGAAAAGCTATA+AGG - Chr5:58269821-58269840 None:intergenic 25.0%
! TCCTACATTAACATTATAGA+GGG - Chr5:58265700-58265719 None:intergenic 25.0%
! TTAATGAACTAAAGTCGATT+AGG + Chr5:58266073-58266092 MsG0580027314.01.T01:intron 25.0%
! TTAGATGACAAATACAATCA+AGG - Chr5:58267416-58267435 None:intergenic 25.0%
! TTCATAACACAAACATTATG+AGG + Chr5:58267924-58267943 MsG0580027314.01.T01:intron 25.0%
! TTGAATCTGTCACTAATTAA+GGG - Chr5:58264871-58264890 None:intergenic 25.0%
! TTGTTTGTGTTATGAAAAGT+TGG - Chr5:58267775-58267794 None:intergenic 25.0%
! TTTGAATCTGTCACTAATTA+AGG - Chr5:58264872-58264891 None:intergenic 25.0%
!! AACTTTGAAAGAGTTTGTTT+GGG - Chr5:58267165-58267184 None:intergenic 25.0%
!! ACATTATAGAGGGAATTTTT+CGG - Chr5:58265690-58265709 None:intergenic 25.0%
!! GGTAACTACAAACTATTTTA+AGG - Chr5:58269182-58269201 None:intergenic 25.0%
!! GTAACTTTTTGAATTATCGA+GGG - Chr5:58265629-58265648 None:intergenic 25.0%
!! GTAATAAAAGGCGAATTTTA+GGG + Chr5:58270333-58270352 MsG0580027314.01.T01:three_prime_UTR 25.0%
!! TCCTTATAGCTTTTCATTTT+AGG + Chr5:58269817-58269836 MsG0580027314.01.T01:intron 25.0%
!! TGTAACTTTTTGAATTATCG+AGG - Chr5:58265630-58265649 None:intergenic 25.0%
!! TGTAATAAAAGGCGAATTTT+AGG + Chr5:58270332-58270351 MsG0580027314.01.T01:three_prime_UTR 25.0%
!!! AAAAATTATTTTTAGTGGGC+TGG - Chr5:58265036-58265055 None:intergenic 25.0%
!!! AAAATTATTTTTAGTGGGCT+GGG - Chr5:58265035-58265054 None:intergenic 25.0%
!!! ACAAATTTATTTTCAGAAGG+GGG - Chr5:58265008-58265027 None:intergenic 25.0%
!!! CTCATTTGTCTTTTTTTTCA+TGG + Chr5:58268216-58268235 MsG0580027314.01.T01:intron 25.0%
!!! GACGACAAGAATTTTTTAAA+TGG - Chr5:58268130-58268149 None:intergenic 25.0%
!!! GATCTCTAAAATTTTAAGAG+GGG - Chr5:58269441-58269460 None:intergenic 25.0%
!!! GTAAGTTTTAGAATTGCTTT+AGG + Chr5:58266150-58266169 MsG0580027314.01.T01:intron 25.0%
!!! TAATTGATTTTTGCAGATCT+AGG + Chr5:58267455-58267474 MsG0580027314.01.T01:intron 25.0%
!!! TATTTTTTTCAACAACATGG+AGG - Chr5:58269779-58269798 None:intergenic 25.0%
!!! TCATTTTTAAGTGTCTGTTT+AGG - Chr5:58269884-58269903 None:intergenic 25.0%
!!! TTTTTTTTGGAAAAGCTGTT+CGG - Chr5:58265375-58265394 None:intergenic 25.0%
AAAAAATATTACCTCACGAG+GGG - Chr5:58268523-58268542 None:intergenic 30.0%
AAACAACATTATGAGGTTGT+AGG + Chr5:58267789-58267808 MsG0580027314.01.T01:intron 30.0%
AAGCCAATAACATTAGAACT+TGG + Chr5:58266553-58266572 MsG0580027314.01.T01:intron 30.0%
ACAAAATGGAAAAGTAACCA+AGG - Chr5:58267541-58267560 None:intergenic 30.0%
ACAAATACAATCAAGGTATG+AGG - Chr5:58267409-58267428 None:intergenic 30.0%
AGAATTGTTGGATCTTACTT+TGG + Chr5:58266114-58266133 MsG0580027314.01.T01:intron 30.0%
AGAATTTCAAAAACAAGTGG+TGG - Chr5:58265905-58265924 None:intergenic 30.0%
AGAGGAAGGGTAAATTATTT+AGG - Chr5:58267193-58267212 None:intergenic 30.0%
AGGACCACTGTTAAAAAAAA+AGG - Chr5:58269155-58269174 None:intergenic 30.0%
AGGGTTTCTTAATTGTGAAT+TGG + Chr5:58266029-58266048 MsG0580027314.01.T01:intron 30.0%
AGGTATGTTAGTAAAGTCAA+AGG + Chr5:58264806-58264825 MsG0580027314.01.T01:intron 30.0%
AGTGACAGATTTAAATCTGT+CGG - Chr5:58265735-58265754 None:intergenic 30.0%
ATAAATTGTAATCAGATCCC+TGG + Chr5:58269044-58269063 MsG0580027314.01.T01:intron 30.0%
ATAATTTCCTCTTGACTCAT+CGG + Chr5:58264747-58264766 MsG0580027314.01.T01:CDS 30.0%
ATAGAGCTGTCAATTTGATA+TGG - Chr5:58265542-58265561 None:intergenic 30.0%
ATCTCAAACAATTGGATTGA+AGG - Chr5:58267629-58267648 None:intergenic 30.0%
ATTGAAATATTAACTCCCTC+TGG + Chr5:58266614-58266633 MsG0580027314.01.T01:intron 30.0%
CAATAACATTAGAACTTGGA+GGG + Chr5:58266557-58266576 MsG0580027314.01.T01:intron 30.0%
CAGTCTTTGTTGAAATCAAT+GGG + Chr5:58268318-58268337 MsG0580027314.01.T01:CDS 30.0%
GAGGAAGGGTAAATTATTTA+GGG - Chr5:58267192-58267211 None:intergenic 30.0%
GCTTGTAAAAAAAAAACCCA+GGG - Chr5:58269064-58269083 None:intergenic 30.0%
GGGTTTCTTAATTGTGAATT+GGG + Chr5:58266030-58266049 MsG0580027314.01.T01:intron 30.0%
GTAATGCAGTTCTTTACTAA+TGG + Chr5:58268777-58268796 MsG0580027314.01.T01:intron 30.0%
GTATAGCCAATAATGCAAAA+CGG - Chr5:58266248-58266267 None:intergenic 30.0%
GTCAGAATTTCAAAAACAAG+TGG - Chr5:58265908-58265927 None:intergenic 30.0%
GTCCTACATTAACATTATAG+AGG - Chr5:58265701-58265720 None:intergenic 30.0%
GTTAATGCCTTATATAAGAG+AGG + Chr5:58266343-58266362 MsG0580027314.01.T01:intron 30.0%
TAAATTGTAATCAGATCCCT+GGG + Chr5:58269045-58269064 MsG0580027314.01.T01:intron 30.0%
TAGGATGGTGAAAGAAAAAA+AGG - Chr5:58267115-58267134 None:intergenic 30.0%
TAGTTACCTCCTTGAATTTA+GGG + Chr5:58269194-58269213 MsG0580027314.01.T01:intron 30.0%
TATCTTCTTTCATCTTCTGT+TGG + Chr5:58268724-58268743 MsG0580027314.01.T01:intron 30.0%
TATGAAAAGTTGGACATAAC+TGG - Chr5:58267765-58267784 None:intergenic 30.0%
TCCCTCTATAATGTTAATGT+AGG + Chr5:58265696-58265715 MsG0580027314.01.T01:intron 30.0%
TCTTAGCCAATCATGATAAT+TGG - Chr5:58268675-58268694 None:intergenic 30.0%
TGCTTGTAAAAAAAAAACCC+AGG - Chr5:58269065-58269084 None:intergenic 30.0%
TGTGTTGTGCAACTTAAAAT+TGG + Chr5:58266807-58266826 MsG0580027314.01.T01:intron 30.0%
TTCGAAATCCATTTCAACAT+GGG + Chr5:58264691-58264710 MsG0580027314.01.T01:CDS 30.0%
TTGACTTTACTAACATACCT+AGG - Chr5:58264806-58264825 None:intergenic 30.0%
TTTAAATCCCCATGTTGAAA+TGG - Chr5:58264702-58264721 None:intergenic 30.0%
! ACCATATGCTCTTTTTCTTT+AGG + Chr5:58268991-58269010 MsG0580027314.01.T01:intron 30.0%
! ACCTAAAGAAAAAGAGCATA+TGG - Chr5:58268995-58269014 None:intergenic 30.0%
! AGAAAAAGAGCATATGGTAT+TGG - Chr5:58268989-58269008 None:intergenic 30.0%
! CTTTTGCTTATAATAGTGAC+CGG + Chr5:58266737-58266756 MsG0580027314.01.T01:intron 30.0%
! GAAAAAGAGCATATGGTATT+GGG - Chr5:58268988-58269007 None:intergenic 30.0%
! GAACTTTGAAAGAGTTTGTT+TGG - Chr5:58267166-58267185 None:intergenic 30.0%
! TATTTTCTTAATCTAGTCCC+TGG - Chr5:58269518-58269537 None:intergenic 30.0%
!! AATGGATTTTTATAGGCAGT+AGG - Chr5:58269715-58269734 None:intergenic 30.0%
!! AATTACATTACTGACGGATT+TGG + Chr5:58264891-58264910 MsG0580027314.01.T01:intron 30.0%
!! AGTGGATCCCAATTATTTTA+AGG - Chr5:58266867-58266886 None:intergenic 30.0%
!! GCAGAGACTAATTTTGATAA+CGG + Chr5:58266921-58266940 MsG0580027314.01.T01:intron 30.0%
!! GGATTTGAAATCAATCCTTT+TGG - Chr5:58270277-58270296 None:intergenic 30.0%
!! GTTGAATGTAATTGCTTTTC+AGG + Chr5:58269989-58270008 MsG0580027314.01.T01:intron 30.0%
!!! GGGCTGTTGTATATTTTTTA+GGG + Chr5:58265422-58265441 MsG0580027314.01.T01:intron 30.0%
!!! TGGGCTGTTGTATATTTTTT+AGG + Chr5:58265421-58265440 MsG0580027314.01.T01:intron 30.0%
!!! TTTTAGGGCTTAACACTATT+GGG + Chr5:58265437-58265456 MsG0580027314.01.T01:intron 30.0%
!!! TTTTTAGGGCTTAACACTAT+TGG + Chr5:58265436-58265455 MsG0580027314.01.T01:intron 30.0%
AAAAATATTACCTCACGAGG+GGG - Chr5:58268522-58268541 None:intergenic 35.0%
AACAAAAATGGGGCTTAATG+TGG - Chr5:58264983-58265002 None:intergenic 35.0%
AATAAAGCCTCAGTGACATA+TGG - Chr5:58270299-58270318 None:intergenic 35.0%
ACAAAAATGGGGCTTAATGT+GGG - Chr5:58264982-58265001 None:intergenic 35.0%
ACAATTGGATTGAAGGATTG+AGG - Chr5:58267622-58267641 None:intergenic 35.0%
ACATCATCAACATCAATTGC+AGG - Chr5:58268453-58268472 None:intergenic 35.0%
ACCATCAATAACATTACTGG+CGG + Chr5:58265597-58265616 MsG0580027314.01.T01:intron 35.0%
ACTATTGGGGCTTATGTAAA+AGG + Chr5:58265451-58265470 MsG0580027314.01.T01:intron 35.0%
AGATGCATTTAATCCTTTGG+TGG - Chr5:58268614-58268633 None:intergenic 35.0%
AGTTCGCAATTCCAAACAAA+AGG + Chr5:58270123-58270142 MsG0580027314.01.T01:CDS 35.0%
ATAAAGCCTCAGTGACATAT+GGG - Chr5:58270298-58270317 None:intergenic 35.0%
ATGTAGAGGCTATTCTTCAA+AGG + Chr5:58266980-58266999 MsG0580027314.01.T01:intron 35.0%
ATTCACTCTCGTTTCTCTTA+AGG + Chr5:58265850-58265869 MsG0580027314.01.T01:intron 35.0%
ATTGACAGCTCTATTACTGA+CGG + Chr5:58265548-58265567 MsG0580027314.01.T01:intron 35.0%
CACAAACATTATGAGGTTGT+AGG + Chr5:58267931-58267950 MsG0580027314.01.T01:intron 35.0%
CACGCAAGATTTATCATGTT+CGG - Chr5:58267827-58267846 None:intergenic 35.0%
CCAATAACATTAGAACTTGG+AGG + Chr5:58266556-58266575 MsG0580027314.01.T01:intron 35.0%
CGAAACAAAATCTAACGTTC+AGG - Chr5:58268573-58268592 None:intergenic 35.0%
CGTAAAATACACCAAATGGT+GGG - Chr5:58269310-58269329 None:intergenic 35.0%
CTAGCTGATGTTATAGATTG+TGG + Chr5:58266773-58266792 MsG0580027314.01.T01:intron 35.0%
CTATTGGGGCTTATGTAAAA+GGG + Chr5:58265452-58265471 MsG0580027314.01.T01:intron 35.0%
CTCTGCTGTTAATTCTCTAA+CGG - Chr5:58266907-58266926 None:intergenic 35.0%
CTTCGAAATCCATTTCAACA+TGG + Chr5:58264690-58264709 MsG0580027314.01.T01:CDS 35.0%
GAGGATGTGAGATGAATTAT+TGG - Chr5:58265789-58265808 None:intergenic 35.0%
GATGCATTTAATCCTTTGGT+GGG - Chr5:58268613-58268632 None:intergenic 35.0%
GATGTGAGATGAATTATTGG+CGG - Chr5:58265786-58265805 None:intergenic 35.0%
GCAGTCTTTGTTGAAATCAA+TGG + Chr5:58268317-58268336 MsG0580027314.01.T01:CDS 35.0%
GTAGTTACCTCCTTGAATTT+AGG + Chr5:58269193-58269212 MsG0580027314.01.T01:intron 35.0%
GTTAGCATTCACTAGATTGA+TGG + Chr5:58266486-58266505 MsG0580027314.01.T01:intron 35.0%
GTTCCCTAGTCAAATTTCTA+GGG + Chr5:58270539-58270558 MsG0580027314.01.T01:three_prime_UTR 35.0%
GTTGCCATAGTATATGAAGA+CGG + Chr5:58264831-58264850 MsG0580027314.01.T01:intron 35.0%
TAAACAAGTTCCTTGAGCTA+TGG + Chr5:58268367-58268386 MsG0580027314.01.T01:CDS 35.0%
TAATGTCCCTAAATTCAAGG+AGG - Chr5:58269203-58269222 None:intergenic 35.0%
TAGCCTCTTGTGTAAAAACA+GGG - Chr5:58269341-58269360 None:intergenic 35.0%
TAGGCGATGGTTGTAATAAA+AGG + Chr5:58270321-58270340 MsG0580027314.01.T01:three_prime_UTR 35.0%
TATGAACGTTGCAGAATTGT+TGG + Chr5:58266102-58266121 MsG0580027314.01.T01:intron 35.0%
TATTGGGGCTTATGTAAAAG+GGG + Chr5:58265453-58265472 MsG0580027314.01.T01:intron 35.0%
TCGAAATCCATTTCAACATG+GGG + Chr5:58264692-58264711 MsG0580027314.01.T01:CDS 35.0%
TCTGCTGTTAATTCTCTAAC+GGG - Chr5:58266906-58266925 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG - Chr5:58269336-58269355 None:intergenic 35.0%
TGAAGAAGAAGAAGAGTGAT+GGG - Chr5:58265930-58265949 None:intergenic 35.0%
TGAAGGTCGTTCTATAACTA+CGG - Chr5:58267494-58267513 None:intergenic 35.0%
TGAGCTGGTAACAAACAAAA+TGG - Chr5:58268918-58268937 None:intergenic 35.0%
TGCTTATAATAGTGACCAGA+GGG - Chr5:58266632-58266651 None:intergenic 35.0%
TGTAGAGGCTATTCTTCAAA+GGG + Chr5:58266981-58267000 MsG0580027314.01.T01:intron 35.0%
TGTGAATTGGGAACTGTTTA+GGG + Chr5:58266042-58266061 MsG0580027314.01.T01:intron 35.0%
TGTTCCCTAGTCAAATTTCT+AGG + Chr5:58270538-58270557 MsG0580027314.01.T01:three_prime_UTR 35.0%
TGTTTGGGCTGAATAATGAT+GGG - Chr5:58267150-58267169 None:intergenic 35.0%
TTGAAGAAGAAGAAGAGTGA+TGG - Chr5:58265931-58265950 None:intergenic 35.0%
TTGAAGGATTGAGGAAGATA+CGG - Chr5:58267613-58267632 None:intergenic 35.0%
TTGCCATAGTATATGAAGAC+GGG + Chr5:58264832-58264851 MsG0580027314.01.T01:intron 35.0%
TTGCTTATAATAGTGACCAG+AGG - Chr5:58266633-58266652 None:intergenic 35.0%
TTGTGAATTGGGAACTGTTT+AGG + Chr5:58266041-58266060 MsG0580027314.01.T01:intron 35.0%
TTGTTTGGGCTGAATAATGA+TGG - Chr5:58267151-58267170 None:intergenic 35.0%
TTTAAACCCCCTTTACATGT+GGG + Chr5:58265496-58265515 MsG0580027314.01.T01:intron 35.0%
TTTGTTGAAATCAATGGGTG+TGG + Chr5:58268323-58268342 MsG0580027314.01.T01:CDS 35.0%
! AACTTCTATGGCTGATAATG+AGG + Chr5:58268260-58268279 MsG0580027314.01.T01:CDS 35.0%
! AATCAATCCTTTTGGCGTTT+AGG - Chr5:58270269-58270288 None:intergenic 35.0%
! AGGAACTTGTTTATAACACG+AGG - Chr5:58268360-58268379 None:intergenic 35.0%
! CCTCCAAGTTCTAATGTTAT+TGG - Chr5:58266559-58266578 None:intergenic 35.0%
! TCCAATCCGTTTTGCATTAT+TGG + Chr5:58266239-58266258 MsG0580027314.01.T01:intron 35.0%
! TTGAGAGGAAAGTATGTGTT+AGG + Chr5:58266286-58266305 MsG0580027314.01.T01:intron 35.0%
! TTGGCAATGGTATTTTGTTG+CGG - Chr5:58270037-58270056 None:intergenic 35.0%
! TTTAGGGCTTAACACTATTG+GGG + Chr5:58265438-58265457 MsG0580027314.01.T01:intron 35.0%
! TTTTAAACCCCCTTTACATG+TGG + Chr5:58265495-58265514 MsG0580027314.01.T01:intron 35.0%
!! AATTTTAAGAGGGGTAACCT+TGG - Chr5:58269432-58269451 None:intergenic 35.0%
!! ACATTAAGCCCCATTTTTGT+TGG + Chr5:58264982-58265001 MsG0580027314.01.T01:intron 35.0%
!! CAAAAAGCATCATGTTTGAG+AGG + Chr5:58266271-58266290 MsG0580027314.01.T01:intron 35.0%
!! CCAATTGCTGACTGATTTTA+GGG + Chr5:58266010-58266029 MsG0580027314.01.T01:intron 35.0%
!! CTTAATGTGGGCTTTTTAAG+TGG - Chr5:58264970-58264989 None:intergenic 35.0%
!! GAGCTGTAGGTTTTATAACT+AGG - Chr5:58267348-58267367 None:intergenic 35.0%
!! GATAACGGAGATAAAATGTG+AGG + Chr5:58266936-58266955 MsG0580027314.01.T01:intron 35.0%
!! TCCAATTGCTGACTGATTTT+AGG + Chr5:58266009-58266028 MsG0580027314.01.T01:intron 35.0%
!! TGATGTTGATGATGTTAAGC+TGG + Chr5:58268458-58268477 MsG0580027314.01.T01:CDS 35.0%
!! TTTTCAAGAGTGAGTATCCT+TGG + Chr5:58267521-58267540 MsG0580027314.01.T01:intron 35.0%
!! TTTTGTTTGGAATTGCGAAC+TGG - Chr5:58270124-58270143 None:intergenic 35.0%
!!! GGTTTTTTCAGCATTAGTGA+GGG - Chr5:58265580-58265599 None:intergenic 35.0%
!!! TGGTTTTTTCAGCATTAGTG+AGG - Chr5:58265581-58265600 None:intergenic 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG + Chr5:58269335-58269354 MsG0580027314.01.T01:intron 35.0%
AAGCTGAAACAAACGCTGAT+AGG - Chr5:58269610-58269629 None:intergenic 40.0%
AATAGCAATGAATCACCAGC+AGG - Chr5:58270372-58270391 None:intergenic 40.0%
AATCAGTCAGCAATTGGAGA+AGG - Chr5:58266007-58266026 None:intergenic 40.0%
AATGAAAAGGGGTAGAGGAA+GGG - Chr5:58267206-58267225 None:intergenic 40.0%
AATTCAACTGACAGAGCTGT+AGG - Chr5:58267361-58267380 None:intergenic 40.0%
ACACCTCTAGTCAGTAGTTA+CGG - Chr5:58264922-58264941 None:intergenic 40.0%
ACCTCCCTAGAAATTTGACT+AGG - Chr5:58270546-58270565 None:intergenic 40.0%
AGCAATCAATGTGTCCTGAT+CGG - Chr5:58270093-58270112 None:intergenic 40.0%
ATAGCAATGAATCACCAGCA+GGG - Chr5:58270371-58270390 None:intergenic 40.0%
ATCATGAACAAACCCACCAA+AGG + Chr5:58268598-58268617 MsG0580027314.01.T01:intron 40.0%
ATTAAAAAATCAGCCACCGC+CGG + Chr5:58265189-58265208 MsG0580027314.01.T01:intron 40.0%
ATTGGGAACTTCTTCATCCT+CGG - Chr5:58270171-58270190 None:intergenic 40.0%
ATTGGGGCTTATGTAAAAGG+GGG + Chr5:58265454-58265473 MsG0580027314.01.T01:intron 40.0%
ATTGGGTTACATGACACACA+AGG - Chr5:58268971-58268990 None:intergenic 40.0%
CATTGCCAAAGTCTATAGCA+GGG + Chr5:58270048-58270067 MsG0580027314.01.T01:CDS 40.0%
CCAGTCATCACTCAAATCTA+AGG + Chr5:58265953-58265972 MsG0580027314.01.T01:intron 40.0%
CCCTAAAATCAGTCAGCAAT+TGG - Chr5:58266013-58266032 None:intergenic 40.0%
CCTCCCTAGAAATTTGACTA+GGG - Chr5:58270545-58270564 None:intergenic 40.0%
CCTTAGATTTGAGTGATGAC+TGG - Chr5:58265956-58265975 None:intergenic 40.0%
GCCAATAATGCAAAACGGAT+TGG - Chr5:58266243-58266262 None:intergenic 40.0%
GCGTAAAATACACCAAATGG+TGG - Chr5:58269311-58269330 None:intergenic 40.0%
GCTGCGTAAAATACACCAAA+TGG - Chr5:58269314-58269333 None:intergenic 40.0%
GCTGTCAATTTGATATGGCT+TGG - Chr5:58265537-58265556 None:intergenic 40.0%
GTAGAGGCTATTCTTCAAAG+GGG + Chr5:58266982-58267001 MsG0580027314.01.T01:intron 40.0%
GTAGCCTCTTGTGTAAAAAC+AGG - Chr5:58269342-58269361 None:intergenic 40.0%
GTTGTTGTCATGTGACTGTA+AGG - Chr5:58269396-58269415 None:intergenic 40.0%
TCAAATCCCATATGTCACTG+AGG + Chr5:58270289-58270308 MsG0580027314.01.T01:three_prime_UTR 40.0%
TCACCATCCTAGCAATTAAG+AGG + Chr5:58267124-58267143 MsG0580027314.01.T01:intron 40.0%
TCATCCTCGGTTTCTTCTAT+AGG - Chr5:58270158-58270177 None:intergenic 40.0%
TCCGCCAGTAATGTTATTGA+TGG - Chr5:58265601-58265620 None:intergenic 40.0%
TCTGTCTTCTCTTCTTGAGA+CGG - Chr5:58270206-58270225 None:intergenic 40.0%
TGAAAAAAGATGGGGCTTGT+GGG + Chr5:58265402-58265421 MsG0580027314.01.T01:intron 40.0%
TGAGGAAGATACGGAAGTAA+CGG - Chr5:58267604-58267623 None:intergenic 40.0%
TGCTTATAATAGTGACCGGA+GGG + Chr5:58266741-58266760 MsG0580027314.01.T01:intron 40.0%
TTCTTTCTCCTGCATGTTTC+TGG + Chr5:58267707-58267726 MsG0580027314.01.T01:intron 40.0%
TTGCAGTGGGATAACTTCTA+TGG + Chr5:58268248-58268267 MsG0580027314.01.T01:CDS 40.0%
TTGCTTATAATAGTGACCGG+AGG + Chr5:58266740-58266759 MsG0580027314.01.T01:intron 40.0%
TTTACACAAGAGGCTACAAG+AGG + Chr5:58269345-58269364 MsG0580027314.01.T01:intron 40.0%
! ACTTTTCGCCAGAAAATTCC+TGG + Chr5:58265268-58265287 MsG0580027314.01.T01:intron 40.0%
! AGAACTGAGTTGCAAGTTGA+TGG - Chr5:58267292-58267311 None:intergenic 40.0%
! CTTGCAACTCAGTTCTTTTG+AGG + Chr5:58267296-58267315 MsG0580027314.01.T01:intron 40.0%
! GGTTCGATAGACCTTTTGTT+TGG - Chr5:58270137-58270156 None:intergenic 40.0%
! TAAGTGGCGCTTTGCATTTT+GGG - Chr5:58264954-58264973 None:intergenic 40.0%
! TTAAGTGGCGCTTTGCATTT+TGG - Chr5:58264955-58264974 None:intergenic 40.0%
! TTTTGTGGGCTTAGTGACAA+AGG + Chr5:58265056-58265075 MsG0580027314.01.T01:intron 40.0%
!! AATTTTCTGGCGAAAAGTGG+TGG - Chr5:58265266-58265285 None:intergenic 40.0%
!! AGGAATTTTCTGGCGAAAAG+TGG - Chr5:58265269-58265288 None:intergenic 40.0%
!! CTGGTTTGCTAGTTAGAATC+TGG + Chr5:58267726-58267745 MsG0580027314.01.T01:intron 40.0%
!! GTCACTGAGGCTTTATTAGT+AGG + Chr5:58270302-58270321 MsG0580027314.01.T01:three_prime_UTR 40.0%
!! TGGTGGGTTTGTTCATGATT+GGG - Chr5:58268597-58268616 None:intergenic 40.0%
!! TTGGTGGGTTTGTTCATGAT+TGG - Chr5:58268598-58268617 None:intergenic 40.0%
AGAAGGGGGCCAACAAAAAT+GGG - Chr5:58264994-58265013 None:intergenic 45.0%
AGAGAAAGGCTGAAGAGTGA+TGG - Chr5:58267239-58267258 None:intergenic 45.0%
AGAGATCTAAAAGGGCAACC+CGG + Chr5:58269244-58269263 MsG0580027314.01.T01:intron 45.0%
AGGAAGACTCGAATATGCCA+AGG + Chr5:58268280-58268299 MsG0580027314.01.T01:CDS 45.0%
AGTCAGCAATTGGAGAAGGA+AGG - Chr5:58266003-58266022 None:intergenic 45.0%
CAATGAAAAGGGGTAGAGGA+AGG - Chr5:58267207-58267226 None:intergenic 45.0%
CATAGCGATACCATAGCTCA+AGG - Chr5:58268380-58268399 None:intergenic 45.0%
CCAGCTCATGAGTTGTAATC+AGG + Chr5:58268930-58268949 MsG0580027314.01.T01:intron 45.0%
CCATTGCCAAAGTCTATAGC+AGG + Chr5:58270047-58270066 MsG0580027314.01.T01:CDS 45.0%
CCTGATTACAACTCATGAGC+TGG - Chr5:58268933-58268952 None:intergenic 45.0%
CCTGCTATAGACTTTGGCAA+TGG - Chr5:58270050-58270069 None:intergenic 45.0%
CGAACCTATAGAAGAAACCG+AGG + Chr5:58270151-58270170 MsG0580027314.01.T01:CDS 45.0%
CTAGCAAACCAGAAACATGC+AGG - Chr5:58267718-58267737 None:intergenic 45.0%
CTCTAGTCAGTAGTTACGGA+GGG - Chr5:58264918-58264937 None:intergenic 45.0%
CTGAAAAAAGATGGGGCTTG+TGG + Chr5:58265401-58265420 MsG0580027314.01.T01:intron 45.0%
CTGTCTTCTCTTCTTGAGAC+GGG - Chr5:58270205-58270224 None:intergenic 45.0%
GAAGTTGACCTGGGATTGAA+TGG - Chr5:58268484-58268503 None:intergenic 45.0%
GCAACAATGAAAAGGGGTAG+AGG - Chr5:58267211-58267230 None:intergenic 45.0%
GCAATCAATGTGTCCTGATC+GGG - Chr5:58270092-58270111 None:intergenic 45.0%
GCTGGGAAAAAGGAAGAGAA+AGG - Chr5:58267253-58267272 None:intergenic 45.0%
GCTTGGTCATCTTTGATCCT+AGG + Chr5:58264786-58264805 MsG0580027314.01.T01:CDS 45.0%
GGAAAGGACACTCTTTGATG+GGG - Chr5:58270242-58270261 None:intergenic 45.0%
GGAAGACTCGAATATGCCAA+GGG + Chr5:58268281-58268300 MsG0580027314.01.T01:CDS 45.0%
GGAATTGCGAACTGGTAGTT+GGG - Chr5:58270116-58270135 None:intergenic 45.0%
GGGAAAGGACACTCTTTGAT+GGG - Chr5:58270243-58270262 None:intergenic 45.0%
GTCAGCAATTGGAGAAGGAA+GGG - Chr5:58266002-58266021 None:intergenic 45.0%
GTCATGTGACTGTAAGGTCA+CGG - Chr5:58269390-58269409 None:intergenic 45.0%
GTCGTTCTATAACTACGGTG+CGG - Chr5:58267489-58267508 None:intergenic 45.0%
GTGCCCGTCTTCATATACTA+TGG - Chr5:58264838-58264857 None:intergenic 45.0%
GTTGGATAAGTGCATGAGCT+TGG + Chr5:58264769-58264788 MsG0580027314.01.T01:CDS 45.0%
TAGCAATGAATCACCAGCAG+GGG - Chr5:58270370-58270389 None:intergenic 45.0%
TATCCAACCGATGAGTCAAG+AGG - Chr5:58264757-58264776 None:intergenic 45.0%
TCACATGTTTGGGCTGAGAT+TGG + Chr5:58268835-58268854 MsG0580027314.01.T01:intron 45.0%
TCAGCAATTGGAGAAGGAAG+GGG - Chr5:58266001-58266020 None:intergenic 45.0%
TCATGTGACTGTAAGGTCAC+GGG - Chr5:58269389-58269408 None:intergenic 45.0%
TGAAAGCTGAGAGTGAGGAT+AGG - Chr5:58270498-58270517 None:intergenic 45.0%
TGAGCTATGGTATCGCTATG+TGG + Chr5:58268380-58268399 MsG0580027314.01.T01:CDS 45.0%
TGATGTGTTAACAGATGCCC+AGG + Chr5:58268404-58268423 MsG0580027314.01.T01:CDS 45.0%
TGCACAATCTTTGCATCCCT+TGG - Chr5:58268300-58268319 None:intergenic 45.0%
TGGAATTGCGAACTGGTAGT+TGG - Chr5:58270117-58270136 None:intergenic 45.0%
TTTCCTCTTGACTCATCGGT+TGG + Chr5:58264751-58264770 MsG0580027314.01.T01:CDS 45.0%
TTTGCTGAAAGCTGAGAGTG+AGG - Chr5:58270503-58270522 None:intergenic 45.0%
! AAGTGGCGCTTTGCATTTTG+GGG - Chr5:58264953-58264972 None:intergenic 45.0%
! AATCCTTTTGGCGTTTAGGC+AGG - Chr5:58270265-58270284 None:intergenic 45.0%
! AGCATGCTCTGAATACACCT+GGG - Chr5:58268424-58268443 None:intergenic 45.0%
! ATCCTTTTGGCGTTTAGGCA+GGG - Chr5:58270264-58270283 None:intergenic 45.0%
! CCCTAGTCAAATTTCTAGGG+AGG + Chr5:58270542-58270561 MsG0580027314.01.T01:three_prime_UTR 45.0%
! GGTGGGTTTGTTCATGATTG+GGG - Chr5:58268596-58268615 None:intergenic 45.0%
! TGATGGGCCTCTTAATTGCT+AGG - Chr5:58267134-58267153 None:intergenic 45.0%
! TTCTCTTCTTGAGACGGGTT+GGG - Chr5:58270200-58270219 None:intergenic 45.0%
!! ACTGAGTTGCAAGTTGATGG+TGG - Chr5:58267289-58267308 None:intergenic 45.0%
!! GAGGCTTTATTAGTAGGCGA+TGG + Chr5:58270308-58270327 MsG0580027314.01.T01:three_prime_UTR 45.0%
!! TCTGTTGGCTCTAGCTTTCT+TGG + Chr5:58268739-58268758 MsG0580027314.01.T01:intron 45.0%
!! TGATGGTGGAAAATCGAACG+CGG - Chr5:58267275-58267294 None:intergenic 45.0%
!!! TTTTCAGGTGCTTCTAGAGC+TGG + Chr5:58270004-58270023 MsG0580027314.01.T01:intron 45.0%
!!! AAAAAAAAATTATTTTTAGT+GGG - Chr5:58265040-58265059 None:intergenic 5.0%
!!! AAATTATTTTAAGTTTAAAA+GGG + Chr5:58269467-58269486 MsG0580027314.01.T01:intron 5.0%
!!! ATAATTTGAAATTTTTTTTA+AGG - Chr5:58267021-58267040 None:intergenic 5.0%
!!! CATTTTTTTTTTTAAAAAAA+TGG - Chr5:58269733-58269752 None:intergenic 5.0%
!!! TAAAAATAATTTTTTTTTGT+GGG + Chr5:58265042-58265061 MsG0580027314.01.T01:intron 5.0%
AAGGTCACGGGTTCAAGTCT+TGG - Chr5:58269377-58269396 None:intergenic 50.0%
AATATTACCTCACGAGGGGG+TGG - Chr5:58268519-58268538 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - Chr5:58265806-58265825 None:intergenic 50.0%
AGCTAGACAACTACTCCCTC+CGG - Chr5:58266759-58266778 None:intergenic 50.0%
ATCAATGTGTCCTGATCGGG+TGG - Chr5:58270089-58270108 None:intergenic 50.0%
ATGGGTGCAGTGATTGCAGT+GGG + Chr5:58268235-58268254 MsG0580027314.01.T01:intron 50.0%
ATTGAAGGGCGAGTGAGAAG+AGG + Chr5:58267069-58267088 MsG0580027314.01.T01:intron 50.0%
CAAAGTCTATAGCAGGGCCT+GGG + Chr5:58270054-58270073 MsG0580027314.01.T01:CDS 50.0%
CAACTTTACCAGTTGCGCCA+AGG + Chr5:58269412-58269431 MsG0580027314.01.T01:intron 50.0%
CAGAAGGGGGCCAACAAAAA+TGG - Chr5:58264995-58265014 None:intergenic 50.0%
CAGGTGTATTCAGAGCATGC+TGG + Chr5:58268423-58268442 MsG0580027314.01.T01:CDS 50.0%
CCTCTAGTCAGTAGTTACGG+AGG - Chr5:58264919-58264938 None:intergenic 50.0%
CGAGAAGCTGAAGTTGACCT+GGG - Chr5:58268493-58268512 None:intergenic 50.0%
CTTCTCTTCTTGAGACGGGT+TGG - Chr5:58270201-58270220 None:intergenic 50.0%
GAAAGGCTGAAGAGTGATGG+AGG - Chr5:58267236-58267255 None:intergenic 50.0%
GAAGGGGGCCAACAAAAATG+GGG - Chr5:58264993-58265012 None:intergenic 50.0%
GAGGCGGCAACAATGAAAAG+GGG - Chr5:58267217-58267236 None:intergenic 50.0%
GAGGCTATTCTTCAAAGGGG+CGG + Chr5:58266985-58267004 MsG0580027314.01.T01:intron 50.0%
GGAGGCGGCAACAATGAAAA+GGG - Chr5:58267218-58267237 None:intergenic 50.0%
GGATGCTGATGTGCAGTTAG+TGG - Chr5:58266885-58266904 None:intergenic 50.0%
GGGCCTCTTAATTGCTAGGA+TGG - Chr5:58267130-58267149 None:intergenic 50.0%
GGGGAAAGGACACTCTTTGA+TGG - Chr5:58270244-58270263 None:intergenic 50.0%
GTTCTATAACTACGGTGCGG+CGG - Chr5:58267486-58267505 None:intergenic 50.0%
TAAGCTGGCCATTCAATCCC+AGG + Chr5:58268473-58268492 MsG0580027314.01.T01:CDS 50.0%
TGGAGGCGGCAACAATGAAA+AGG - Chr5:58267219-58267238 None:intergenic 50.0%
TTGAAGGGCGAGTGAGAAGA+GGG + Chr5:58267070-58267089 MsG0580027314.01.T01:intron 50.0%
TTGGAGAAGGAAGGGGAGAT+TGG - Chr5:58265994-58266013 None:intergenic 50.0%
! AGTGGTGGAGAGAAGAAGAG+AGG - Chr5:58265890-58265909 None:intergenic 50.0%
! CAGCATGCTCTGAATACACC+TGG - Chr5:58268425-58268444 None:intergenic 50.0%
! CCTCCGTAACTACTGACTAG+AGG + Chr5:58264916-58264935 MsG0580027314.01.T01:intron 50.0%
! TCCTTTTGGCGTTTAGGCAG+GGG - Chr5:58270263-58270282 None:intergenic 50.0%
! TTTCTGGCGAAAAGTGGTGG+TGG - Chr5:58265263-58265282 None:intergenic 50.0%
AACCCCCTTTACATGTGGGC+TGG + Chr5:58265500-58265519 MsG0580027314.01.T01:intron 55.0%
ACCCCCTTTACATGTGGGCT+GGG + Chr5:58265501-58265520 MsG0580027314.01.T01:intron 55.0%
ACTGAAGCTCCTGCATACGC+GGG + Chr5:58269270-58269289 MsG0580027314.01.T01:intron 55.0%
AGCCCCAGCCCACATGTAAA+GGG - Chr5:58265507-58265526 None:intergenic 55.0%
AGCTGTTCGGTCAACAGCAG+AGG - Chr5:58265362-58265381 None:intergenic 55.0%
ATCGAACGCGGCTGGGAAAA+AGG - Chr5:58267263-58267282 None:intergenic 55.0%
ATGCAGGAGCTTCAGTGCAC+CGG - Chr5:58269266-58269285 None:intergenic 55.0%
CACTGAAGCTCCTGCATACG+CGG + Chr5:58269269-58269288 MsG0580027314.01.T01:intron 55.0%
CATGGGTGCAGTGATTGCAG+TGG + Chr5:58268234-58268253 MsG0580027314.01.T01:intron 55.0%
CCAAAGTCTATAGCAGGGCC+TGG + Chr5:58270053-58270072 MsG0580027314.01.T01:CDS 55.0%
CCAGGCCCTGCTATAGACTT+TGG - Chr5:58270056-58270075 None:intergenic 55.0%
GCGAGAAGCTGAAGTTGACC+TGG - Chr5:58268494-58268513 None:intergenic 55.0%
GTGGAAAATCGAACGCGGCT+GGG - Chr5:58267270-58267289 None:intergenic 55.0%
GTTTCCACTTCCACCCGATC+AGG + Chr5:58270076-58270095 MsG0580027314.01.T01:CDS 55.0%
TCAACAGCAGAGGTCAACGC+CGG - Chr5:58265352-58265371 None:intergenic 55.0%
TCCCCTGCCTAAACGCCAAA+AGG + Chr5:58270259-58270278 MsG0580027314.01.T01:CDS 55.0%
TTGGCGTTTAGGCAGGGGAA+AGG - Chr5:58270258-58270277 None:intergenic 55.0%
! AGGCTGAAGAGTGATGGAGG+CGG - Chr5:58267233-58267252 None:intergenic 55.0%
!! AGACGGGTTGGGATCAGCAT+TGG - Chr5:58270189-58270208 None:intergenic 55.0%
!! GACGGGTTGGGATCAGCATT+GGG - Chr5:58270188-58270207 None:intergenic 55.0%
!! TGGCGAAAAGTGGTGGTGGA+CGG - Chr5:58265259-58265278 None:intergenic 55.0%
!!! GTGGCGGACCAGGAATTTTC+TGG - Chr5:58265279-58265298 None:intergenic 55.0%
AGGGCGAGTGAGAAGAGGGA+AGG + Chr5:58267074-58267093 MsG0580027314.01.T01:intron 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - Chr5:58269423-58269442 None:intergenic 60.0%
CAGCCCCAGCCCACATGTAA+AGG - Chr5:58265508-58265527 None:intergenic 60.0%
CCCCAGCCCACATGTAAAGG+GGG - Chr5:58265505-58265524 None:intergenic 60.0%
CTGAAGCTCCTGCATACGCG+GGG + Chr5:58269271-58269290 MsG0580027314.01.T01:intron 60.0%
GCCCCAGCCCACATGTAAAG+GGG - Chr5:58265506-58265525 None:intergenic 60.0%
GGGCGAGTGAGAAGAGGGAA+GGG + Chr5:58267075-58267094 MsG0580027314.01.T01:intron 60.0%
GGTACATCGATCACCCCTGC+TGG + Chr5:58270354-58270373 MsG0580027314.01.T01:three_prime_UTR 60.0%
GGTGGAAAATCGAACGCGGC+TGG - Chr5:58267271-58267290 None:intergenic 60.0%
GTGTCCTGATCGGGTGGAAG+TGG - Chr5:58270083-58270102 None:intergenic 60.0%
TCGGGTGGAAGTGGAAACCC+AGG - Chr5:58270074-58270093 None:intergenic 60.0%
TGCAGGAGCTTCAGTGCACC+GGG - Chr5:58269265-58269284 None:intergenic 60.0%
TGCGGTGGTTGTCGAAGCTC+CGG - Chr5:58265211-58265230 None:intergenic 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - Chr5:58269298-58269317 None:intergenic 60.0%
! CCCCCTTTACATGTGGGCTG+GGG + Chr5:58265502-58265521 MsG0580027314.01.T01:intron 60.0%
!! CGAAAAGTGGTGGTGGACGG+CGG - Chr5:58265256-58265275 None:intergenic 60.0%
AGAGGTCAACGCCGGAGCTC+CGG - Chr5:58265344-58265363 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG + Chr5:58269296-58269315 MsG0580027314.01.T01:intron 65.0%
GGTGGTTGTCGAAGCTCCGG+CGG - Chr5:58265208-58265227 None:intergenic 65.0%
ACCGACCACCACCGGAGCTC+CGG + Chr5:58265230-58265249 MsG0580027314.01.T01:intron 70.0%
CATACGCGGGGTCCGGGAAG+GGG + Chr5:58269283-58269302 MsG0580027314.01.T01:intron 70.0%
CTCCTGCATACGCGGGGTCC+GGG + Chr5:58269277-58269296 MsG0580027314.01.T01:intron 70.0%
CTCGCAACCACCCCCTCGTG+AGG + Chr5:58268509-58268528 MsG0580027314.01.T01:CDS 70.0%
GCATACGCGGGGTCCGGGAA+GGG + Chr5:58269282-58269301 MsG0580027314.01.T01:intron 70.0%
GCTCCTGCATACGCGGGGTC+CGG + Chr5:58269276-58269295 MsG0580027314.01.T01:intron 70.0%
GGTTGTCGAAGCTCCGGCGG+TGG - Chr5:58265205-58265224 None:intergenic 70.0%
TGCATACGCGGGGTCCGGGA+AGG + Chr5:58269281-58269300 MsG0580027314.01.T01:intron 70.0%
TTCCCGGACCCCGCGTATGC+AGG - Chr5:58269282-58269301 None:intergenic 70.0%
! ACCACCGCACCGACCACCAC+CGG + Chr5:58265222-58265241 MsG0580027314.01.T01:intron 70.0%
! AGCTCCGGTGGTGGTCGGTG+CGG - Chr5:58265229-58265248 None:intergenic 70.0%
!! AAGTGGTGGTGGACGGCGGC+CGG - Chr5:58265252-58265271 None:intergenic 70.0%
GCTCCGGCGACTCACGGTGG+CGG - Chr5:58265295-58265314 None:intergenic 75.0%
GGAGCTCCGGCGACTCACGG+TGG - Chr5:58265298-58265317 None:intergenic 75.0%
GGCGGAGCTCCGGCGACTCA+CGG - Chr5:58265301-58265320 None:intergenic 75.0%
GGTCAACGCCGGAGCTCCGG+CGG - Chr5:58265341-58265360 None:intergenic 75.0%
GGTCCGCCACCGTGAGTCGC+CGG + Chr5:58265289-58265308 MsG0580027314.01.T01:intron 75.0%
TGGTTCCGGCGGCGGAGCTC+CGG - Chr5:58265311-58265330 None:intergenic 75.0%
! GCCGGAGCTCCGGTGGTGGT+CGG - Chr5:58265234-58265253 None:intergenic 75.0%
! TCCGGTGGTGGTCGGTGCGG+TGG - Chr5:58265226-58265245 None:intergenic 75.0%
!! GCGACTCACGGTGGCGGACC+AGG - Chr5:58265289-58265308 None:intergenic 75.0%
! ACCGCGGTCCGCCGGAGCTC+CGG + Chr5:58265330-58265349 MsG0580027314.01.T01:intron 80.0%
! AGTCGCCGGAGCTCCGCCGC+CGG + Chr5:58265303-58265322 MsG0580027314.01.T01:intron 80.0%
! CCGGAACCACCGCGGTCCGC+CGG + Chr5:58265322-58265341 MsG0580027314.01.T01:intron 80.0%
! CCGGCGGACCGCGGTGGTTC+CGG - Chr5:58265325-58265344 None:intergenic 80.0%
! CTCCGCCGCCGGAACCACCG+CGG + Chr5:58265314-58265333 MsG0580027314.01.T01:intron 80.0%
! GACCGCGGTGGTTCCGGCGG+CGG - Chr5:58265319-58265338 None:intergenic 80.0%
! GCGGACCGCGGTGGTTCCGG+CGG - Chr5:58265322-58265341 None:intergenic 80.0%
! GTGGACGGCGGCCGGAGCTC+CGG - Chr5:58265244-58265263 None:intergenic 80.0%
! GACGGCGGCCGGAGCTCCGG+TGG - Chr5:58265241-58265260 None:intergenic 85.0%
! GCCGGAGCTCCGGCGGACCG+CGG - Chr5:58265334-58265353 None:intergenic 85.0%
! GGAGCTCCGGCGGACCGCGG+TGG - Chr5:58265331-58265350 None:intergenic 85.0%
! GGCGGCCGGAGCTCCGGTGG+TGG - Chr5:58265238-58265257 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
Chr5 gene 58264674 58270596 58264674 ID=MsG0580027314.01;Name=MsG0580027314.01
Chr5 mRNA 58264674 58270596 58264674 ID=MsG0580027314.01.T01;Parent=MsG0580027314.01;Name=MsG0580027314.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0.5|0.66|0.66|1|1|3|310|231
Chr5 exon 58264674 58264807 58264674 ID=MsG0580027314.01.T01:exon:21854;Parent=MsG0580027314.01.T01
Chr5 exon 58268245 58268530 58268245 ID=MsG0580027314.01.T01:exon:21855;Parent=MsG0580027314.01.T01
Chr5 exon 58270011 58270596 58270011 ID=MsG0580027314.01.T01:exon:21856;Parent=MsG0580027314.01.T01
Chr5 CDS 58264674 58264807 58264674 ID=MsG0580027314.01.T01:cds;Parent=MsG0580027314.01.T01
Chr5 CDS 58268245 58268530 58268245 ID=MsG0580027314.01.T01:cds;Parent=MsG0580027314.01.T01
Chr5 CDS 58270011 58270286 58270011 ID=MsG0580027314.01.T01:cds;Parent=MsG0580027314.01.T01
Chr5 three_prime_UTR 58270287 58270596 58270287 ID=MsG0580027314.01.T01:three_prime_utr;Parent=MsG0580027314.01.T01
Gene Sequence

>MsG0580027314.01.T01

ATGCTTGAAGGAGACACTTCGAAATCCATTTCAACATGGGGATTTAAAGCAATGCAGCTGATTAAAATCTTTAATAATTTCCTCTTGACTCATCGGTTGGATAAGTGCATGAGCTTGGTCATCTTTGATCCTAGTGATTGCAGTGGGATAACTTCTATGGCTGATAATGAGGAAGACTCGAATATGCCAAGGGATGCAAAGATTGTGCAGTCTTTGTTGAAATCAATGGGTGTGGAAGAATATGAACCTCGTGTTATAAACAAGTTCCTTGAGCTATGGTATCGCTATGTGGTTGATGTGTTAACAGATGCCCAGGTGTATTCAGAGCATGCTGGCAAGCCTGCAATTGATGTTGATGATGTTAAGCTGGCCATTCAATCCCAGGTCAACTTCAGCTTCTCGCAACCACCCCCTCGTGAGGTGCTTCTAGAGCTGGCACAAAACCGCAACAAAATACCATTGCCAAAGTCTATAGCAGGGCCTGGGTTTCCACTTCCACCCGATCAGGACACATTGATTGCTCCCAACTACCAGTTCGCAATTCCAAACAAAAGGTCTATCGAACCTATAGAAGAAACCGAGGATGAAGAAGTTCCCAATGCTGATCCCAACCCGTCTCAAGAAGAGAAGACAGATGCGCAACAAAATCCCCATCAAAGAGTGTCCTTTCCCCTGCCTAAACGCCAAAAGGATTGA
Protein sequence

>MsG0580027314.01.T01

MLEGDTSKSISTWGFKAMQLIKIFNNFLLTHRLDKCMSLVIFDPSDCSGITSMADNEEDSNMPRDAKIVQSLLKSMGVEEYEPRVINKFLELWYRYVVDVLTDAQVYSEHAGKPAIDVDDVKLAIQSQVNFSFSQPPPREVLLELAQNRNKIPLPKSIAGPGFPLPPDQDTLIAPNYQFAIPNKRSIEPIEETEDEEVPNADPNPSQEEKTDAQQNPHQRVSFPLPKRQKD*