AlfalfaGEDB | MsG0580027443.01

M. sativa cultivar ZhongmuNo.1 / MsG0580027443.01

KEGG: K14795
GO: GO:0000469
PFAM: PF06102

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580027443.01.T01	XP_003614714.1	96.774	248	8	0	1	248	1	248	1.90E-173	488

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580027443.01.T01	A7SL20	34.728	239	142	4	20	246	7	243	2.65E-37	134

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580027443.01.T01	G7JXB6	96.774	248	8	0	1	248	1	248	9.08e-174	488

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
MsG0180002677.01	MsG0580027443.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580027443.01.T01	MTR_5g058150	96.774	248	8	0	1	248	1	248	2.30e-177	488
MsG0580027443.01.T01	MTR_6g075250	75.403	248	58	3	1	247	1	246	8.17e-121	344

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580027443.01.T01	AT1G12650	58.794	199	79	2	52	247	48	246	2.90e-70	216
MsG0580027443.01.T01	AT1G12650	58.794	199	79	2	52	247	48	246	2.90e-70	216
MsG0580027443.01.T01	AT1G12650	58.794	199	79	2	52	247	48	246	2.90e-70	216
MsG0580027443.01.T01	AT1G12650	58.794	199	79	2	52	247	48	246	2.90e-70	216

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Find 69 sgRNAs with CRISPR-Local

Find 585 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATTTCAGTGGAGTGGA+GGG	0.535642	5:-60966238	None:intergenic
AAATAGAAGAGCACATAGCA+TGG	0.575579	5:+60972265	MsG0580027443.01.T01:CDS
AACCGATGAAACCCACTACG+AGG	0.717095	5:+60966363	MsG0580027443.01.T01:CDS
AAGATTTCAGTGGAGTGGAG+GGG	0.654511	5:-60966237	None:intergenic
AAGCCTTTGCTTCCGGATCT+CGG	0.499116	5:-60973931	None:intergenic
AATAGAAGAGCACATAGCAT+GGG	0.631081	5:+60972266	MsG0580027443.01.T01:CDS
AATCTTTGGCCGCGGCAACA+AGG	0.548651	5:+60966254	MsG0580027443.01.T01:five_prime_UTR
AATGTATATAACATTATTTC+TGG	0.158881	5:-60974221	None:intergenic
ACAACACAAAAGCCATGATT+TGG	0.397491	5:-60974291	None:intergenic
ACAAGTAATCTCACCTTCTT+AGG	0.296154	5:-60967958	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAATATCCGACCTTGTT+TGG	+	Chr5:60969328-60969347	MsG0580027443.01.T01:intron	30.0%
AAAAGGAATAACCAATGACA+GGG	-	Chr5:60968852-60968871	None:intergenic	30.0%
AAAAGTAAGCAAATCCAAAC+AGG	+	Chr5:60967450-60967469	MsG0580027443.01.T01:intron	30.0%
AAAGAATAGTACATTGAGTC+GGG	-	Chr5:60968893-60968912	None:intergenic	30.0%
AAATTGCATCTGATACAAAG+TGG	+	Chr5:60970627-60970646	MsG0580027443.01.T01:intron	30.0%
AACTGTACAAGATACATCAA+AGG	-	Chr5:60971817-60971836	None:intergenic	30.0%
AAGCTGTTAGATAATACTGA+AGG	+	Chr5:60968925-60968944	MsG0580027443.01.T01:intron	30.0%
AATAAGCTGTTTATCCAAAC+AGG	-	Chr5:60967702-60967683	None:intergenic	30.0%
AATGATGCATGTATGTATCA+TGG	+	Chr5:60969782-60969801	MsG0580027443.01.T01:intron	30.0%
AATTGCATCTGATACAAAGT+GGG	+	Chr5:60970628-60970647	MsG0580027443.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	60966175	60974525	60966175	ID=MsG0580027443.01;Name=MsG0580027443.01
Chr5	mRNA	60966175	60974525	60966175	ID=MsG0580027443.01.T01;Parent=MsG0580027443.01;Name=MsG0580027443.01.T01;_AED=0.43;_eAED=0.43;_QI=156\|1\|1\|1\|1\|1\|9\|350\|248
Chr5	exon	60966175	60966432	60966175	ID=MsG0580027443.01.T01:exon:43045;Parent=MsG0580027443.01.T01
Chr5	exon	60966524	60966660	60966524	ID=MsG0580027443.01.T01:exon:43046;Parent=MsG0580027443.01.T01
Chr5	exon	60967900	60967966	60967900	ID=MsG0580027443.01.T01:exon:43047;Parent=MsG0580027443.01.T01
Chr5	exon	60968408	60968460	60968408	ID=MsG0580027443.01.T01:exon:43048;Parent=MsG0580027443.01.T01
Chr5	exon	60972072	60972126	60972072	ID=MsG0580027443.01.T01:exon:43049;Parent=MsG0580027443.01.T01
Chr5	exon	60972216	60972290	60972216	ID=MsG0580027443.01.T01:exon:43050;Parent=MsG0580027443.01.T01
Chr5	exon	60972378	60972495	60972378	ID=MsG0580027443.01.T01:exon:43051;Parent=MsG0580027443.01.T01
Chr5	exon	60973931	60973977	60973931	ID=MsG0580027443.01.T01:exon:43052;Parent=MsG0580027443.01.T01
Chr5	exon	60974083	60974525	60974083	ID=MsG0580027443.01.T01:exon:43053;Parent=MsG0580027443.01.T01
Chr5	five_prime_UTR	60966175	60966330	60966175	ID=MsG0580027443.01.T01:five_prime_utr;Parent=MsG0580027443.01.T01
Chr5	CDS	60966331	60966432	60966331	ID=MsG0580027443.01.T01:cds;Parent=MsG0580027443.01.T01
Chr5	CDS	60966524	60966660	60966524	ID=MsG0580027443.01.T01:cds;Parent=MsG0580027443.01.T01
Chr5	CDS	60967900	60967966	60967900	ID=MsG0580027443.01.T01:cds;Parent=MsG0580027443.01.T01
Chr5	CDS	60968408	60968460	60968408	ID=MsG0580027443.01.T01:cds;Parent=MsG0580027443.01.T01
Chr5	CDS	60972072	60972126	60972072	ID=MsG0580027443.01.T01:cds;Parent=MsG0580027443.01.T01
Chr5	CDS	60972216	60972290	60972216	ID=MsG0580027443.01.T01:cds;Parent=MsG0580027443.01.T01
Chr5	CDS	60972378	60972495	60972378	ID=MsG0580027443.01.T01:cds;Parent=MsG0580027443.01.T01
Chr5	CDS	60973931	60973977	60973931	ID=MsG0580027443.01.T01:cds;Parent=MsG0580027443.01.T01
Chr5	CDS	60974083	60974175	60974083	ID=MsG0580027443.01.T01:cds;Parent=MsG0580027443.01.T01
Chr5	three_prime_UTR	60974176	60974525	60974176	ID=MsG0580027443.01.T01:three_prime_utr;Parent=MsG0580027443.01.T01

Gene Sequence

>MsG0580027443.01.T01

ATGAACAAACACGGAAGCAGAATCCCAAATTCAACCGATGAAACCCACTACGAGGAGAATGAAACTGACGAGTCACTTTCTTCTTCCTCCTCATCAGAAGATGAGGAAGAAGAAGAGATAGAGAAAGAGCTAGCTGATGTAACATTCGAGGAATTGCAGAAAGCTCGATCGAATGGGGCGCATGCGTTTTTCAAGAAACCTGCAGAAGATAAGAAGTTAAAAAGGGCTAATAAGAATAGGCCAATGGAAGCTAGTAGCAAGAAGCCAGTTCCTGCTTTTAGAGATGTCATTCAAGCTCCTAAGAAGGTTGTACGTGATCCACGATTTGAGTCTCTTTGCGGTACATTTGACAATGATCGGTTTAGAAAGAGATATAATTTTTTATATGAAAATGATCTTCCTGCTGAAAGACAGGCTCTTAAAAGGCAATTGAGAAAATATAAAGATCCAGAGCGTAGAAGTGAAATAGAAGAGCACATAGCATGGGTTGATAAACAGTTGAAATCTGATTCAACAAAGAATATTGAGACACAGATTTTGGCTAAGCACAAGAAGAAAGAGAGAGAAGCAGCAAAGCAGGGAAAACGTCCCTTTTATCTCAAGAAATCCGAGATCCGGAAGCAAAGGCTTGTTGAAAAATTTAATCATCTCAAGTCATCTGGAAATCTTGAATCATATATTGAGAAAAAGAGGAAGAGAAATGCTGCAAAGGACCATAGATTCATGCCATATCGTAGATCTGGTTAA

Protein sequence

>MsG0580027443.01.T01

MNKHGSRIPNSTDETHYEENETDESLSSSSSSEDEEEEEIEKELADVTFEELQKARSNGAHAFFKKPAEDKKLKRANKNRPMEASSKKPVPAFRDVIQAPKKVVRDPRFESLCGTFDNDRFRKRYNFLYENDLPAERQALKRQLRKYKDPERRSEIEEHIAWVDKQLKSDSTKNIETQILAKHKKKEREAAKQGKRPFYLKKSEIRKQRLVEKFNHLKSSGNLESYIEKKRKRNAAKDHRFMPYRRSG*