AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027523.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027523.01.T01 MTR_5g058920 87.117 326 31 3 7 321 117 442 0.0 541
MsG0580027523.01.T01 MTR_3g072650 64.048 331 104 6 1 321 105 430 8.69e-128 372
MsG0580027523.01.T01 MTR_3g072650 61.871 278 91 6 1 268 105 377 6.01e-111 328
MsG0580027523.01.T01 MTR_7g451440 53.125 256 88 5 53 286 168 413 9.72e-80 249
MsG0580027523.01.T01 MTR_4g099180 50.769 260 103 5 45 296 140 382 1.28e-76 241
MsG0580027523.01.T01 MTR_8g007500 53.516 256 96 4 78 312 191 444 2.15e-70 226
MsG0580027523.01.T01 MTR_4g099180 61.745 149 50 2 45 193 140 281 2.87e-57 187
MsG0580027523.01.T01 MTR_4g099180 32.308 130 72 2 126 255 168 281 5.74e-11 62.8
MsG0580027523.01.T01 MTR_4g099180 61.745 149 50 2 45 193 140 281 2.89e-57 188
MsG0580027523.01.T01 MTR_4g099180 32.090 134 75 2 122 255 164 281 4.80e-11 63.2
MsG0580027523.01.T01 MTR_8g080860 38.636 176 92 2 78 253 14 173 2.17e-27 108
MsG0580027523.01.T01 MTR_8g080860 31.771 192 109 2 60 251 95 264 8.22e-22 93.6
MsG0580027523.01.T01 MTR_8g080860 35.211 142 85 1 60 201 141 275 3.93e-16 77.8
MsG0580027523.01.T01 MTR_8g080860 38.636 176 92 2 78 253 10 169 2.73e-27 108
MsG0580027523.01.T01 MTR_8g080860 31.771 192 109 2 60 251 91 260 1.04e-21 93.2
MsG0580027523.01.T01 MTR_8g080860 35.211 142 85 1 60 201 137 271 4.78e-16 77.4
MsG0580027523.01.T01 MTR_8g088930 28.846 260 142 6 79 310 8 252 7.29e-21 93.6
MsG0580027523.01.T01 MTR_8g088930 41.667 96 56 0 77 172 98 193 4.27e-13 70.5
MsG0580027523.01.T01 MTR_8g088930 28.846 260 142 6 79 310 8 252 7.37e-21 93.6
MsG0580027523.01.T01 MTR_8g088930 41.667 96 56 0 77 172 98 193 4.28e-13 70.5
MsG0580027523.01.T01 MTR_8g088930 28.846 260 142 6 79 310 8 252 8.14e-21 93.6
MsG0580027523.01.T01 MTR_8g088930 41.667 96 56 0 77 172 98 193 3.72e-13 70.5
MsG0580027523.01.T01 MTR_8g088930 28.846 260 142 6 79 310 8 252 8.14e-21 93.6
MsG0580027523.01.T01 MTR_8g088930 41.667 96 56 0 77 172 98 193 3.79e-13 70.5
MsG0580027523.01.T01 MTR_5g459450 36.970 165 89 2 85 249 70 219 1.18e-20 93.2
MsG0580027523.01.T01 MTR_5g459450 29.747 158 96 2 82 239 90 232 4.45e-13 70.5
MsG0580027523.01.T01 MTR_8g095240 31.776 214 104 4 75 246 41 254 3.48e-20 90.9
MsG0580027523.01.T01 MTR_8g095240 32.547 212 88 6 83 254 118 314 9.71e-16 77.8
MsG0580027523.01.T01 MTR_8g095240 30.337 178 107 4 75 238 166 340 2.13e-13 70.9
MsG0580027523.01.T01 MTR_8g095240 35.714 112 72 0 74 185 212 323 3.03e-12 67.4
MsG0580027523.01.T01 MTR_8g095240 35.211 142 77 2 110 251 7 133 1.67e-11 65.1
MsG0580027523.01.T01 MTR_8g080340 36.719 128 81 0 74 201 32 159 7.08e-20 85.5
MsG0580027523.01.T01 MTR_8g080340 36.424 151 80 2 83 233 19 153 5.90e-18 80.5
MsG0580027523.01.T01 MTR_8g092090 31.658 199 90 2 82 249 7 190 1.26e-18 84.0
MsG0580027523.01.T01 MTR_8g092090 32.749 171 100 1 69 239 71 226 4.09e-17 79.7
MsG0580027523.01.T01 MTR_8g092090 36.066 122 78 0 62 183 110 231 2.11e-13 69.3
MsG0580027523.01.T01 MTR_8g039100 29.204 226 137 4 24 249 1 203 5.25e-18 85.1
MsG0580027523.01.T01 MTR_8g039100 39.326 89 54 0 74 162 135 223 9.62e-13 69.3
MsG0580027523.01.T01 MTR_4g107460 33.505 194 90 4 77 246 2 180 2.29e-17 82.0
MsG0580027523.01.T01 MTR_4g107460 32.353 170 100 1 69 238 87 241 1.40e-15 76.6
MsG0580027523.01.T01 MTR_4g107460 31.148 183 88 3 89 248 61 228 8.47e-15 74.3
MsG0580027523.01.T01 MTR_8g080310 31.765 170 101 1 77 246 3 157 2.64e-17 78.2
MsG0580027523.01.T01 MTR_8g080310 36.090 133 62 1 74 183 23 155 1.95e-13 67.4
MsG0580027523.01.T01 MTR_1g050740 32.796 186 106 3 64 249 45 211 3.39e-17 82.8
MsG0580027523.01.T01 MTR_3g073100 36.145 166 90 3 85 249 58 208 2.09e-16 80.5
MsG0580027523.01.T01 MTR_3g073100 31.214 173 104 2 83 255 80 237 1.22e-14 75.1
MsG0580027523.01.T01 MTR_7g089950 29.101 189 126 2 64 244 51 239 2.58e-16 80.1
MsG0580027523.01.T01 MTR_8g095170 29.381 194 121 3 60 252 6 184 6.56e-15 75.9
MsG0580027523.01.T01 MTR_8g095170 31.098 164 92 2 82 245 52 194 1.68e-13 71.6
MsG0580027523.01.T01 MTR_8g095170 29.381 194 121 3 60 252 6 184 1.06e-14 75.1
MsG0580027523.01.T01 MTR_8g095170 31.098 164 92 2 82 245 52 194 2.01e-13 71.2
MsG0580027523.01.T01 MTR_3g097260 34.706 170 103 2 85 246 56 225 1.43e-14 74.7
MsG0580027523.01.T01 MTR_1g062740 33.835 133 65 2 83 192 96 228 1.53e-14 74.7
MsG0580027523.01.T01 MTR_1g062740 29.947 187 113 4 83 267 73 243 7.69e-13 69.7
MsG0580027523.01.T01 MTR_1g062740 28.571 140 85 1 112 251 56 180 8.89e-11 63.2
MsG0580027523.01.T01 MTR_6g043150 30.570 193 103 2 84 245 79 271 2.36e-13 70.1
MsG0580027523.01.T01 MTR_6g043150 31.579 171 102 2 78 248 4 159 4.73e-13 69.3
MsG0580027523.01.T01 MTR_3g014650 32.121 165 85 3 85 249 90 227 2.48e-13 71.2
MsG0580027523.01.T01 MTR_3g014650 40.449 89 53 0 74 162 159 247 1.91e-12 68.6
MsG0580027523.01.T01 MTR_3g014650 27.811 169 107 1 83 251 122 275 7.09e-11 63.5
MsG0580027523.01.T01 MTR_8g080350 48.649 74 36 1 112 185 87 158 9.44e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027523.01.T01 AT1G21920 60.000 320 107 6 7 317 108 415 1.80e-113 335
MsG0580027523.01.T01 AT1G77660 56.173 324 123 5 7 319 106 421 2.98e-107 319
MsG0580027523.01.T01 AT1G21920 58.303 271 92 6 7 268 108 366 6.00e-102 304
MsG0580027523.01.T01 AT4G17080 50.526 285 116 4 45 311 225 502 2.11e-76 243
MsG0580027523.01.T01 AT2G35170 50.752 266 107 5 45 302 193 442 1.01e-75 240
MsG0580027523.01.T01 AT2G41210 34.857 175 93 3 81 249 61 220 3.36e-20 91.7
MsG0580027523.01.T01 AT2G41210 34.545 165 93 1 82 246 91 240 5.11e-20 91.3
MsG0580027523.01.T01 AT1G21980 32.967 182 108 3 85 255 77 255 2.22e-19 89.4
MsG0580027523.01.T01 AT1G10900 34.444 180 100 2 83 249 10 184 5.13e-19 88.2
MsG0580027523.01.T01 AT1G10900 35.075 134 64 1 82 192 55 188 1.09e-11 66.2
MsG0580027523.01.T01 AT1G10900 37.374 99 62 0 74 172 93 191 6.20e-11 63.9
MsG0580027523.01.T01 AT1G10900 34.444 180 100 2 83 249 10 184 5.13e-19 88.2
MsG0580027523.01.T01 AT1G10900 35.075 134 64 1 82 192 55 188 1.09e-11 66.2
MsG0580027523.01.T01 AT1G10900 37.374 99 62 0 74 172 93 191 6.20e-11 63.9
MsG0580027523.01.T01 AT1G10900 34.444 180 100 2 83 249 10 184 5.13e-19 88.2
MsG0580027523.01.T01 AT1G10900 35.075 134 64 1 82 192 55 188 1.09e-11 66.2
MsG0580027523.01.T01 AT1G10900 37.374 99 62 0 74 172 93 191 6.20e-11 63.9
MsG0580027523.01.T01 AT1G60890 33.333 171 98 3 83 253 22 176 1.74e-18 86.7
MsG0580027523.01.T01 AT1G60890 39.394 99 60 0 74 172 105 203 3.62e-14 73.6
MsG0580027523.01.T01 AT1G60890 27.143 210 135 4 83 274 45 254 1.73e-13 71.6
MsG0580027523.01.T01 AT1G60890 34.328 134 65 1 82 192 67 200 1.69e-12 68.6
MsG0580027523.01.T01 AT1G60890 33.333 171 98 3 83 253 10 164 1.76e-18 86.7
MsG0580027523.01.T01 AT1G60890 39.394 99 60 0 74 172 93 191 3.77e-14 73.6
MsG0580027523.01.T01 AT1G60890 27.143 210 135 4 83 274 33 242 1.83e-13 71.6
MsG0580027523.01.T01 AT1G60890 34.328 134 65 1 82 192 55 188 1.72e-12 68.6
MsG0580027523.01.T01 AT1G77740 35.294 170 95 2 85 254 78 232 3.04e-18 85.9
MsG0580027523.01.T01 AT1G77740 31.469 143 83 1 83 225 122 249 2.37e-13 71.2
MsG0580027523.01.T01 AT1G77740 35.294 170 95 2 85 254 78 232 3.04e-18 85.9
MsG0580027523.01.T01 AT1G77740 31.469 143 83 1 83 225 122 249 2.37e-13 71.2
MsG0580027523.01.T01 AT3G56960 32.121 165 97 2 85 249 73 222 5.43e-18 85.1
MsG0580027523.01.T01 AT3G56960 30.303 165 100 1 82 246 93 242 1.51e-16 80.9
MsG0580027523.01.T01 AT3G56960 32.121 165 97 2 85 249 73 222 5.43e-18 85.1
MsG0580027523.01.T01 AT3G56960 30.303 165 100 1 82 246 93 242 1.51e-16 80.9
MsG0580027523.01.T01 AT3G07960 34.524 168 95 2 85 252 28 180 6.30e-18 85.1
MsG0580027523.01.T01 AT3G07960 30.909 165 99 2 82 246 48 197 6.97e-18 84.7
MsG0580027523.01.T01 AT2G26420 33.333 165 95 1 85 249 54 203 6.93e-18 84.7
MsG0580027523.01.T01 AT2G26420 34.839 155 86 2 82 236 74 213 6.92e-15 75.9
MsG0580027523.01.T01 AT3G07960 33.929 168 96 1 85 252 28 180 7.58e-18 84.7
MsG0580027523.01.T01 AT3G07960 30.909 165 99 2 82 246 48 197 7.80e-18 84.7
MsG0580027523.01.T01 AT2G26420 33.333 165 95 1 85 249 54 203 7.67e-18 84.7
MsG0580027523.01.T01 AT2G26420 34.839 155 86 2 82 236 74 213 7.79e-15 75.9
MsG0580027523.01.T01 AT2G26420 33.333 165 95 1 85 249 54 203 7.67e-18 84.7
MsG0580027523.01.T01 AT2G26420 34.839 155 86 2 82 236 74 213 7.79e-15 75.9
MsG0580027523.01.T01 AT3G07960 33.929 168 96 1 85 252 28 180 8.76e-18 84.3
MsG0580027523.01.T01 AT3G07960 30.909 165 99 2 82 246 48 197 1.01e-17 84.3
MsG0580027523.01.T01 AT3G07960 33.929 168 96 1 85 252 28 180 8.76e-18 84.3
MsG0580027523.01.T01 AT3G07960 30.909 165 99 2 82 246 48 197 1.01e-17 84.3
MsG0580027523.01.T01 AT3G09920 35.211 142 69 2 74 192 89 230 3.27e-15 77.0
MsG0580027523.01.T01 AT3G09920 29.167 168 104 2 82 249 74 226 2.67e-13 71.2
MsG0580027523.01.T01 AT3G09920 38.776 98 60 0 74 171 135 232 1.19e-12 68.9
MsG0580027523.01.T01 AT3G09920 35.211 142 69 2 74 192 89 230 3.27e-15 77.0
MsG0580027523.01.T01 AT3G09920 29.167 168 104 2 82 249 74 226 2.67e-13 71.2
MsG0580027523.01.T01 AT3G09920 38.776 98 60 0 74 171 135 232 1.19e-12 68.9
MsG0580027523.01.T01 AT3G09920 35.211 142 69 2 74 192 89 230 3.27e-15 77.0
MsG0580027523.01.T01 AT3G09920 29.167 168 104 2 82 249 74 226 2.67e-13 71.2
MsG0580027523.01.T01 AT3G09920 38.776 98 60 0 74 171 135 232 1.19e-12 68.9
MsG0580027523.01.T01 AT3G09920 35.211 142 69 2 74 192 89 230 3.27e-15 77.0
MsG0580027523.01.T01 AT3G09920 29.167 168 104 2 82 249 74 226 2.67e-13 71.2
MsG0580027523.01.T01 AT3G09920 38.776 98 60 0 74 171 135 232 1.19e-12 68.9

Find 93 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCACTTGGTCATCATTTC+GGG 0.092585 5:+62697112 None:intergenic
AGACATGGTTATGGTGTTTA+TGG 0.169103 5:-62699038 MsG0580027523.01.T01:CDS
TATACTGGTGATTGTTATTC+TGG 0.202956 5:-62699011 MsG0580027523.01.T01:CDS
TCTCCACTTGGTCATCATTT+CGG 0.221085 5:+62697111 None:intergenic
AAATATACAGGGGAGTATTT+TGG 0.233941 5:-62697972 MsG0580027523.01.T01:CDS
TTCGTTCTCCTCTGCTGAAC+CGG 0.245865 5:+62699289 None:intergenic
TATTCTGGTGAATGGTTTAA+TGG 0.248444 5:-62698996 MsG0580027523.01.T01:CDS
AACAGTGTCCATTCGCAAAA+TGG 0.316812 5:+62697924 None:intergenic
GGCTAGGGGAAGTAGATATA+AGG 0.322034 5:-62699081 MsG0580027523.01.T01:CDS
CCATTACTGCTTTCTCCACT+TGG 0.336002 5:+62697099 None:intergenic
GGAGACAAAATGCATGGATT+TGG 0.341821 5:-62697951 MsG0580027523.01.T01:CDS
TGCAGCAGTGAAAGCTGTTC+AGG 0.366394 5:-62697045 MsG0580027523.01.T01:CDS
AATGGACAAAGTCATGGTTT+TGG 0.371589 5:-62698978 MsG0580027523.01.T01:CDS
TATGTTGGTGAATTTAAGTT+TGG 0.373929 5:-62698927 MsG0580027523.01.T01:CDS
TATGAAGGTGATTGGGTTGA+TGG 0.387527 5:-62699134 MsG0580027523.01.T01:CDS
TAGTAATTATATGAGTGATT+TGG 0.389829 5:-62696929 MsG0580027523.01.T01:three_prime_UTR
AAGCAGTAATGGCAGCAAAC+AGG 0.414541 5:-62697088 MsG0580027523.01.T01:CDS
CGTGATTCATAGAACCGTTT+CGG 0.423978 5:-62699402 MsG0580027523.01.T01:CDS
GGTGTTTATACATTTCGAAA+TGG 0.427912 5:-62697863 MsG0580027523.01.T01:CDS
AGGAATGGAGATAAATATAC+AGG 0.428752 5:-62697984 MsG0580027523.01.T01:CDS
GATGGAAAATATGATGGTTA+TGG 0.429760 5:-62699116 MsG0580027523.01.T01:CDS
TGAAATGTTACCGGCGCAAC+CGG 0.429994 5:-62699949 None:intergenic
ATGGAATTGAAAGCTGGGCT+AGG 0.431240 5:-62699097 MsG0580027523.01.T01:CDS
CTTGGTCATCATTTCGGGGA+TGG 0.432258 5:+62697117 None:intergenic
GTGATTGTTATTCTGGTGAA+TGG 0.433191 5:-62699004 MsG0580027523.01.T01:CDS
CTTCACAAAGTAACTTGTAC+AGG 0.435394 5:-62696837 MsG0580027523.01.T01:three_prime_UTR
GAAGGTCGTCGACAAGGTTA+TGG 0.435450 5:-62697884 MsG0580027523.01.T01:CDS
GTGGAAGATATGAAGGTGAT+TGG 0.439954 5:-62699142 MsG0580027523.01.T01:CDS
TTCTACGAAGGAGAATTTCA+TGG 0.448504 5:-62699206 MsG0580027523.01.T01:CDS
AAACCGGTTCAATGGTTCAT+AGG 0.449347 5:-62699317 MsG0580027523.01.T01:CDS
TGTATAGTCTGAAATGTTAC+CGG 0.456047 5:-62699958 None:intergenic
TGTCCCATTCACCACATCTT+CGG 0.459760 5:+62697837 None:intergenic
TCGTTCTCCTCTGCTGAACC+GGG 0.465117 5:+62699290 None:intergenic
GAAAGCTGTTCAGGATAGAA+TGG 0.466671 5:-62697036 MsG0580027523.01.T01:CDS
GCAAGGACAGCCTGCGTTTG+TGG 0.474259 5:+62697788 None:intergenic
GCGAATGGACACTGTTATGA+AGG 0.474775 5:-62697917 MsG0580027523.01.T01:CDS
CAAGGTTTGAGACATGGTTA+TGG 0.475027 5:-62699047 MsG0580027523.01.T01:CDS
TGGTTAAATTGCAGGCTGCT+AGG 0.485769 5:-62697163 MsG0580027523.01.T01:intron
TCTGATGGAAGTTGTTATGT+TGG 0.486647 5:-62698942 MsG0580027523.01.T01:CDS
GGCTGTCCTTGCATCAGCTC+AGG 0.494994 5:-62697777 MsG0580027523.01.T01:intron
ATCAAGTTTAAAAGTGAGTG+AGG 0.495741 5:-62696995 MsG0580027523.01.T01:exon
TGGAATTGAAAGCTGGGCTA+GGG 0.501451 5:-62699096 MsG0580027523.01.T01:CDS
TTTCATGGTGGAAAGTGTAA+TGG 0.501723 5:-62699191 MsG0580027523.01.T01:CDS
TCTCCTATGAACCATTGAAC+CGG 0.504381 5:+62699314 None:intergenic
TAATACTCTTCAACCTCCTC+CGG 0.505275 5:+62696873 None:intergenic
ACTGATAATTAATCTTTACA+TGG 0.507976 5:+62696812 None:intergenic
TGGAAGATATGAAGGTGATT+GGG 0.511435 5:-62699141 MsG0580027523.01.T01:CDS
GGTGTTCAATCTTGTTCTGA+TGG 0.512152 5:-62698957 MsG0580027523.01.T01:CDS
TTTGTGAGTGGAAGATATGA+AGG 0.513634 5:-62699149 MsG0580027523.01.T01:CDS
TGGTGACAATCTCACGATAC+AGG 0.515168 5:-62699911 MsG0580027523.01.T01:intron
CTCTCTACCGCCACAAACGC+AGG 0.521164 5:-62697798 MsG0580027523.01.T01:CDS
ATGGTTATGGAATTGAAAGC+TGG 0.525844 5:-62699103 MsG0580027523.01.T01:CDS
CCAAGTGGAGAAAGCAGTAA+TGG 0.535060 5:-62697099 MsG0580027523.01.T01:CDS
GAATCTACAATTCGAAGCAA+AGG 0.538623 5:+62696953 None:intergenic
TATAAGGGTTGTTATAAACA+AGG 0.540310 5:-62699065 MsG0580027523.01.T01:CDS
TTTAAGTTTGGTTCTAAACA+TGG 0.544906 5:-62698915 MsG0580027523.01.T01:intron
TGGTTTAATGGACAAAGTCA+TGG 0.545446 5:-62698984 MsG0580027523.01.T01:CDS
TGGGTTGATGGAAAATATGA+TGG 0.547236 5:-62699122 MsG0580027523.01.T01:CDS
TGCTGCAACTCTAGCAGCAG+TGG 0.555209 5:+62697061 None:intergenic
AGCAGTAATGGCAGCAAACA+GGG 0.556769 5:-62697087 MsG0580027523.01.T01:CDS
GAGACCGAAGATGTGGTGAA+TGG 0.560592 5:-62697841 MsG0580027523.01.T01:CDS
AAAGCTGTTCAGGATAGAAT+GGG 0.560882 5:-62697035 MsG0580027523.01.T01:CDS
GCTAGGGGAAGTAGATATAA+GGG 0.563984 5:-62699080 MsG0580027523.01.T01:CDS
GGTGGAAAGTGTAATGGAAG+TGG 0.564236 5:-62699185 MsG0580027523.01.T01:CDS
CAATGGTTCATAGGAGAACC+CGG 0.565459 5:-62699308 MsG0580027523.01.T01:CDS
CGTGAAAGTGTTGTTGAAAG+AGG 0.566990 5:-62699261 MsG0580027523.01.T01:CDS
TGCAACTCTAGCAGCAGTGG+CGG 0.573289 5:+62697064 None:intergenic
GACGGGAATTTAAAACGACT+CGG 0.577658 5:-62699362 MsG0580027523.01.T01:CDS
TCCACTTGGTCATCATTTCG+GGG 0.578987 5:+62697113 None:intergenic
AGACCGAAGATGTGGTGAAT+GGG 0.583099 5:-62697840 MsG0580027523.01.T01:CDS
AGGAGAACCCGGTTCAGCAG+AGG 0.599107 5:-62699297 MsG0580027523.01.T01:CDS
CGAAATGGAGACCGAAGATG+TGG 0.602119 5:-62697848 MsG0580027523.01.T01:CDS
GACACTGTTATGAAGGAGCA+TGG 0.603134 5:-62697910 MsG0580027523.01.T01:CDS
GAAGTTGAATTCTACAGCAA+TGG 0.609398 5:-62699233 MsG0580027523.01.T01:CDS
AGGACAGCCTGCGTTTGTGG+CGG 0.609546 5:+62697791 None:intergenic
GTGGCGGTAGAGAGTGCTTG+AGG 0.612938 5:+62697807 None:intergenic
TATGAAGGAGCATGGCATGA+AGG 0.616571 5:-62697902 MsG0580027523.01.T01:CDS
TATAAACAAGGTTTGAGACA+TGG 0.620037 5:-62699053 MsG0580027523.01.T01:CDS
TGGCATGAAGGTCGTCGACA+AGG 0.621349 5:-62697890 MsG0580027523.01.T01:CDS
GGAATTGAAAGCTGGGCTAG+GGG 0.626911 5:-62699095 MsG0580027523.01.T01:CDS
TCAAGTTTAAAAGTGAGTGA+GGG 0.627041 5:-62696994 MsG0580027523.01.T01:exon
AGCAATGGTGATTTCTACGA+AGG 0.631450 5:-62699218 MsG0580027523.01.T01:CDS
GTGAAAGTGTTGTTGAAAGA+GGG 0.632746 5:-62699260 MsG0580027523.01.T01:CDS
TGGTTATGGAATTGAAAGCT+GGG 0.641123 5:-62699102 MsG0580027523.01.T01:CDS
CAAATACCTGAGCTGATGCA+AGG 0.643584 5:+62697771 None:intergenic
GGAATGGAGATAAATATACA+GGG 0.645709 5:-62697983 MsG0580027523.01.T01:CDS
GCTGTTCAGGATAGAATGGG+TGG 0.647734 5:-62697032 MsG0580027523.01.T01:CDS
TCCCCGAAATGATGACCAAG+TGG 0.654313 5:-62697114 MsG0580027523.01.T01:CDS
TACGAAGGAGAATTTCATGG+TGG 0.674011 5:-62699203 MsG0580027523.01.T01:CDS
ATTTGGAAGATGCGCCACCC+TGG 0.687838 5:-62696912 MsG0580027523.01.T01:three_prime_UTR
TCGTGAGATTGTCACCACCA+CGG 0.694837 5:+62699917 None:intergenic
GAATGGAGATAAATATACAG+GGG 0.695134 5:-62697982 MsG0580027523.01.T01:CDS
AGATGTGGTGAATGGGACAG+TGG 0.738225 5:-62697833 MsG0580027523.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAAACCATTATTATTATAT+AGG - Chr5:62698574-62698593 MsG0580027523.01.T01:intron 15.0%
!! TCACAAATTAATATCTAAAT+CGG - Chr5:62698981-62699000 MsG0580027523.01.T01:CDS 15.0%
!!! AGTACTTTTTTTTATGAAAT+GGG - Chr5:62699881-62699900 MsG0580027523.01.T01:intron 15.0%
!!! CTCAAGTTTTTATTTAAATT+GGG - Chr5:62697824-62697843 MsG0580027523.01.T01:CDS 15.0%
!!! TAGTACTTTTTTTTATGAAA+TGG - Chr5:62699880-62699899 MsG0580027523.01.T01:intron 15.0%
!!! TCATTTACGTTAATTTTTTT+TGG - Chr5:62699487-62699506 MsG0580027523.01.T01:intron 15.0%
!!! TCTCAAGTTTTTATTTAAAT+TGG - Chr5:62697823-62697842 MsG0580027523.01.T01:CDS 15.0%
!!! TTTTGAATGAGTTTATTTTT+AGG + Chr5:62698953-62698972 None:intergenic 15.0%
!! AAAAAAAAACTCACCTAAAA+TGG + Chr5:62697793-62697812 None:intergenic 20.0%
!! AAAAGTAAGGATCTAAAAAT+AGG + Chr5:62699392-62699411 None:intergenic 20.0%
!! AAAGTAAGGATCTAAAAATA+GGG + Chr5:62699391-62699410 None:intergenic 20.0%
!! ACTGATAATTAATCTTTACA+TGG + Chr5:62699861-62699880 None:intergenic 20.0%
!! AGCTTCCTATATAATAATAA+TGG + Chr5:62698582-62698601 None:intergenic 20.0%
!! TAAAAATACAGAGATCTATT+TGG + Chr5:62699428-62699447 None:intergenic 20.0%
!! TAGTAATTATATGAGTGATT+TGG - Chr5:62699741-62699760 MsG0580027523.01.T01:intron 20.0%
!!! AGTTCATAACATTTTCATAT+CGG + Chr5:62698061-62698080 None:intergenic 20.0%
!!! ATAAATAGTAGTACCTTTTA+TGG - Chr5:62699249-62699268 MsG0580027523.01.T01:CDS 20.0%
!!! ATGAGTTTATTTTTAGGAAA+AGG + Chr5:62698947-62698966 None:intergenic 20.0%
!!! ATTTTTTTTGGTTAAATTGC+AGG - Chr5:62699499-62699518 MsG0580027523.01.T01:intron 20.0%
!!! TTACTAACATTTTCCATAAA+AGG + Chr5:62699265-62699284 None:intergenic 20.0%
! AGAACGCTCAATAATTTATT+AGG + Chr5:62699204-62699223 None:intergenic 25.0%
! ATAAGAAAAAGAAGAAAACC+CGG - Chr5:62697030-62697049 MsG0580027523.01.T01:CDS 25.0%
! ATTGTCAAATGACATTAACA+AGG + Chr5:62698510-62698529 None:intergenic 25.0%
! GGTACTACTATTTATAATTC+CGG + Chr5:62699244-62699263 None:intergenic 25.0%
! GTACTACTATTTATAATTCC+GGG + Chr5:62699243-62699262 None:intergenic 25.0%
! TAAATTACCCATAGAATTTG+AGG + Chr5:62698344-62698363 None:intergenic 25.0%
! TATAAGGGTTGTTATAAACA+AGG - Chr5:62697605-62697624 MsG0580027523.01.T01:intron 25.0%
! TGATAATCCTCAAATTCTAT+GGG - Chr5:62698334-62698353 MsG0580027523.01.T01:intron 25.0%
!! AAAATAGGGATATTTTCAAC+AGG + Chr5:62699377-62699396 None:intergenic 25.0%
!! ATATGAGTGAAGAAACATTT+TGG + Chr5:62698106-62698125 None:intergenic 25.0%
!! ATTATTGAGCGTTCTTTTAA+TGG - Chr5:62699209-62699228 MsG0580027523.01.T01:CDS 25.0%
!! GTTCATAACATTTTCATATC+GGG + Chr5:62698060-62698079 None:intergenic 25.0%
!! TATGTTGGTGAATTTAAGTT+TGG - Chr5:62697743-62697762 MsG0580027523.01.T01:intron 25.0%
!! TTGACCATTTATGTTCTTTT+GGG - Chr5:62698184-62698203 MsG0580027523.01.T01:intron 25.0%
!! TTGATAATCCTCAAATTCTA+TGG - Chr5:62698333-62698352 MsG0580027523.01.T01:intron 25.0%
!! TTTGACCATTTATGTTCTTT+TGG - Chr5:62698183-62698202 MsG0580027523.01.T01:intron 25.0%
!!! ATGTGATTTTCTAAGATTAC+TGG + Chr5:62697904-62697923 None:intergenic 25.0%
!!! GCAACAATCATATTTTTGAT+TGG - Chr5:62699312-62699331 MsG0580027523.01.T01:CDS 25.0%
!!! GTACTCTATTTTTTCCATAT+CGG - Chr5:62697161-62697180 MsG0580027523.01.T01:intron 25.0%
!!! GTTTATCATTATTTTGTGAG+TGG - Chr5:62697509-62697528 MsG0580027523.01.T01:intron 25.0%
!!! TGAATGTTTTAAAACCGAAA+CGG + Chr5:62697285-62697304 None:intergenic 25.0%
!!! TTCGGTTTTAAAACATTCAT+GGG - Chr5:62697286-62697305 MsG0580027523.01.T01:intron 25.0%
!!! TTTAAGTTTGGTTCTAAACA+TGG - Chr5:62697755-62697774 MsG0580027523.01.T01:intron 25.0%
!!! TTTCGGTTTTAAAACATTCA+TGG - Chr5:62697285-62697304 MsG0580027523.01.T01:intron 25.0%
AATAGACCTTAGACTATAGT+TGG - Chr5:62698607-62698626 MsG0580027523.01.T01:intron 30.0%
ACATAACCAACTATAGTCTA+AGG + Chr5:62698616-62698635 None:intergenic 30.0%
AGACTGAAAAAACCTAGAAT+CGG + Chr5:62697122-62697141 None:intergenic 30.0%
AGCAGTAGTAATAATAAACC+GGG + Chr5:62697096-62697115 None:intergenic 30.0%
AGGAATGGAGATAAATATAC+AGG - Chr5:62698686-62698705 MsG0580027523.01.T01:intron 30.0%
ATCAAGTTTAAAAGTGAGTG+AGG - Chr5:62699675-62699694 MsG0580027523.01.T01:intron 30.0%
CAGCAGTAGTAATAATAAAC+CGG + Chr5:62697097-62697116 None:intergenic 30.0%
CATACCCAAAAGAACATAAA+TGG + Chr5:62698191-62698210 None:intergenic 30.0%
GAATGGAGATAAATATACAG+GGG - Chr5:62698688-62698707 MsG0580027523.01.T01:intron 30.0%
GATGGAAAATATGATGGTTA+TGG - Chr5:62697554-62697573 MsG0580027523.01.T01:intron 30.0%
GCATGTTTGACAAGTTAAAA+GGG - Chr5:62698435-62698454 MsG0580027523.01.T01:intron 30.0%
GGAATGGAGATAAATATACA+GGG - Chr5:62698687-62698706 MsG0580027523.01.T01:intron 30.0%
GGTGTTTATACATTTCGAAA+TGG - Chr5:62698807-62698826 MsG0580027523.01.T01:intron 30.0%
GTAAAAATCTTCTTCGTTGA+CGG + Chr5:62696970-62696989 None:intergenic 30.0%
TAAAAAACAGCAGACCTAAT+TGG - Chr5:62699011-62699030 MsG0580027523.01.T01:CDS 30.0%
TACGCAAACAGAATATCATT+CGG + Chr5:62699160-62699179 None:intergenic 30.0%
TATGCAAAAGCAATAGTAGT+AGG - Chr5:62698529-62698548 MsG0580027523.01.T01:intron 30.0%
TATTCTGGTGAATGGTTTAA+TGG - Chr5:62697674-62697693 MsG0580027523.01.T01:intron 30.0%
TCAAGTTTAAAAGTGAGTGA+GGG - Chr5:62699676-62699695 MsG0580027523.01.T01:intron 30.0%
TCACTGTAACATGAAAAGTA+AGG + Chr5:62699405-62699424 None:intergenic 30.0%
TGCATGTTTGACAAGTTAAA+AGG - Chr5:62698434-62698453 MsG0580027523.01.T01:intron 30.0%
TGTTTGTTTCCATCTTTAGT+GGG + Chr5:62696848-62696867 None:intergenic 30.0%
TTGTTTGTTTCCATCTTTAG+TGG + Chr5:62696849-62696868 None:intergenic 30.0%
! GGTGTTTATGGATTTTATAC+TGG - Chr5:62697644-62697663 MsG0580027523.01.T01:intron 30.0%
! GTTTATGAAATAAAGCGCTA+CGG + Chr5:62697237-62697256 None:intergenic 30.0%
! TAGAATCAGCAACACATTTT+CGG + Chr5:62697204-62697223 None:intergenic 30.0%
! TATAAACAAGGTTTGAGACA+TGG - Chr5:62697617-62697636 MsG0580027523.01.T01:intron 30.0%
! TATACTGGTGATTGTTATTC+TGG - Chr5:62697659-62697678 MsG0580027523.01.T01:intron 30.0%
!! ACTCTGTTACATTTTGATGT+AGG - Chr5:62698666-62698685 MsG0580027523.01.T01:intron 30.0%
!! GTTACATTTTGATGTAGGAA+TGG - Chr5:62698671-62698690 MsG0580027523.01.T01:intron 30.0%
!! TATTTTGGAGACAAAATGCA+TGG - Chr5:62698713-62698732 MsG0580027523.01.T01:intron 30.0%
!!! AAATATACAGGGGAGTATTT+TGG - Chr5:62698698-62698717 MsG0580027523.01.T01:intron 30.0%
!!! AGTGACTCTATTGTTGATTT+TGG - Chr5:62698261-62698280 MsG0580027523.01.T01:intron 30.0%
!!! GTTTTAAAACATTCATGGGA+CGG - Chr5:62697290-62697309 MsG0580027523.01.T01:intron 30.0%
!!! TTTTAAAACATTCATGGGAC+GGG - Chr5:62697291-62697310 MsG0580027523.01.T01:intron 30.0%
AAAAAGAAGAAAACCCGGTT+CGG - Chr5:62697035-62697054 MsG0580027523.01.T01:CDS 35.0%
AAAGCTGTTCAGGATAGAAT+GGG - Chr5:62699635-62699654 MsG0580027523.01.T01:intron 35.0%
ACGCAAACAGAATATCATTC+GGG + Chr5:62699159-62699178 None:intergenic 35.0%
AGACATGGTTATGGTGTTTA+TGG - Chr5:62697632-62697651 MsG0580027523.01.T01:intron 35.0%
ATGGTTATGGAATTGAAAGC+TGG - Chr5:62697567-62697586 MsG0580027523.01.T01:intron 35.0%
CATTCGGGTAATATTTCCAA+AGG + Chr5:62699144-62699163 None:intergenic 35.0%
CTATTTATAATTCCGGGTAC+TGG + Chr5:62699237-62699256 None:intergenic 35.0%
GAAGTTGAATTCTACAGCAA+TGG - Chr5:62697437-62697456 MsG0580027523.01.T01:intron 35.0%
GAATCTACAATTCGAAGCAA+AGG + Chr5:62699720-62699739 None:intergenic 35.0%
GAGTCACTATGAGACTATAT+AGG + Chr5:62698249-62698268 None:intergenic 35.0%
GTTATGCCATCTACAAGTTT+CGG - Chr5:62699033-62699052 MsG0580027523.01.T01:CDS 35.0%
TCTGATGGAAGTTGTTATGT+TGG - Chr5:62697728-62697747 MsG0580027523.01.T01:intron 35.0%
TGGAAGATATGAAGGTGATT+GGG - Chr5:62697529-62697548 MsG0580027523.01.T01:intron 35.0%
TGGTTATGGAATTGAAAGCT+GGG - Chr5:62697568-62697587 MsG0580027523.01.T01:intron 35.0%
TGTAGATGGCATAACCAATT+AGG + Chr5:62699028-62699047 None:intergenic 35.0%
TTCCAAAGGAAGTGAAAAAC+CGG - Chr5:62697337-62697356 MsG0580027523.01.T01:intron 35.0%
TTCTACGAAGGAGAATTTCA+TGG - Chr5:62697464-62697483 MsG0580027523.01.T01:intron 35.0%
TTTGTGAGTGGAAGATATGA+AGG - Chr5:62697521-62697540 MsG0580027523.01.T01:intron 35.0%
! AATGGACAAAGTCATGGTTT+TGG - Chr5:62697692-62697711 MsG0580027523.01.T01:intron 35.0%
! CTTCACAAAGTAACTTGTAC+AGG - Chr5:62699833-62699852 MsG0580027523.01.T01:intron 35.0%
! GTCTTGGTTGTTACCATTTT+AGG - Chr5:62697777-62697796 MsG0580027523.01.T01:intron 35.0%
! GTGATTGTTATTCTGGTGAA+TGG - Chr5:62697666-62697685 MsG0580027523.01.T01:intron 35.0%
! TGGTTTAATGGACAAAGTCA+TGG - Chr5:62697686-62697705 MsG0580027523.01.T01:intron 35.0%
! TTCTCATTCTCGTTCAAGTT+CGG - Chr5:62697058-62697077 MsG0580027523.01.T01:CDS 35.0%
! TTTCATGGTGGAAAGTGTAA+TGG - Chr5:62697479-62697498 MsG0580027523.01.T01:intron 35.0%
!! ATTTTTGATTGGTACTGTCG+TGG - Chr5:62699323-62699342 MsG0580027523.01.T01:CDS 35.0%
!! GTGAAAGTGTTGTTGAAAGA+GGG - Chr5:62697410-62697429 MsG0580027523.01.T01:intron 35.0%
!! TGGGTTGATGGAAAATATGA+TGG - Chr5:62697548-62697567 MsG0580027523.01.T01:intron 35.0%
!! TTTGGTTCTAAACATGGTCT+TGG - Chr5:62697761-62697780 MsG0580027523.01.T01:intron 35.0%
!!! AGGTCTGCTGTTTTTTAAGA+AGG + Chr5:62699008-62699027 None:intergenic 35.0%
!!! TTTTTCCATATCGGTTCAGT+GGG - Chr5:62697170-62697189 MsG0580027523.01.T01:intron 35.0%
!!! TTTTTTCCATATCGGTTCAG+TGG - Chr5:62697169-62697188 MsG0580027523.01.T01:intron 35.0%
AACAGTGTCCATTCGCAAAA+TGG + Chr5:62698749-62698768 None:intergenic 40.0%
AATTTGTGCCCTATGAAGCA+CGG + Chr5:62698002-62698021 None:intergenic 40.0%
ACACGAGTGAAGATTCAAAC+TGG + Chr5:62699456-62699475 None:intergenic 40.0%
AGCAATGGTGATTTCTACGA+AGG - Chr5:62697452-62697471 MsG0580027523.01.T01:intron 40.0%
AGTACTCCGAAACTTGTAGA+TGG + Chr5:62699042-62699061 None:intergenic 40.0%
CCAAAGGAGTTGCTACAATT+TGG + Chr5:62699128-62699147 None:intergenic 40.0%
CCAAATTGTAGCAACTCCTT+TGG - Chr5:62699125-62699144 MsG0580027523.01.T01:CDS 40.0%
CGTGATTCATAGAACCGTTT+CGG - Chr5:62697268-62697287 MsG0580027523.01.T01:intron 40.0%
GAAAGCTGTTCAGGATAGAA+TGG - Chr5:62699634-62699653 MsG0580027523.01.T01:intron 40.0%
GAACCAAATCCTCTTTGCTT+CGG - Chr5:62696889-62696908 MsG0580027523.01.T01:three_prime_UTR 40.0%
GCTAGGGGAAGTAGATATAA+GGG - Chr5:62697590-62697609 MsG0580027523.01.T01:intron 40.0%
GGAGACAAAATGCATGGATT+TGG - Chr5:62698719-62698738 MsG0580027523.01.T01:intron 40.0%
GGTGTTCAATCTTGTTCTGA+TGG - Chr5:62697713-62697732 MsG0580027523.01.T01:intron 40.0%
GTGGAAGATATGAAGGTGAT+TGG - Chr5:62697528-62697547 MsG0580027523.01.T01:intron 40.0%
TAATACTCTTCAACCTCCTC+CGG + Chr5:62699800-62699819 None:intergenic 40.0%
TACGAAGGAGAATTTCATGG+TGG - Chr5:62697467-62697486 MsG0580027523.01.T01:intron 40.0%
TCTCCACTTGGTCATCATTT+CGG + Chr5:62699562-62699581 None:intergenic 40.0%
TCTCCTATGAACCATTGAAC+CGG + Chr5:62697359-62697378 None:intergenic 40.0%
TGGGCACAAACTATGAAGTA+CGG - Chr5:62697843-62697862 MsG0580027523.01.T01:CDS 40.0%
TGGTGAGCAAAAAAGCTTAC+CGG - Chr5:62699778-62699797 MsG0580027523.01.T01:intron 40.0%
! AAACCGGTTCAATGGTTCAT+AGG - Chr5:62697353-62697372 MsG0580027523.01.T01:intron 40.0%
! AAGCAAAGAGGATTTGGTTC+GGG + Chr5:62696889-62696908 None:intergenic 40.0%
! ACTAGACAGCGAAATGGATT+TGG + Chr5:62699291-62699310 None:intergenic 40.0%
! AGCAACACATTTTCGGAAGT+GGG + Chr5:62697197-62697216 None:intergenic 40.0%
! CAAGGTTTGAGACATGGTTA+TGG - Chr5:62697623-62697642 MsG0580027523.01.T01:intron 40.0%
! CTTTTAATGGTTCCAGTACC+CGG - Chr5:62699222-62699241 MsG0580027523.01.T01:CDS 40.0%
! GAAGCAAAGAGGATTTGGTT+CGG + Chr5:62696890-62696909 None:intergenic 40.0%
! GAAGTGAAAAACCGGTTCAA+TGG - Chr5:62697345-62697364 MsG0580027523.01.T01:intron 40.0%
! GACGGGAATTTAAAACGACT+CGG - Chr5:62697308-62697327 MsG0580027523.01.T01:intron 40.0%
! TCTAAGATTACTGGCAGTGT+CGG + Chr5:62697895-62697914 None:intergenic 40.0%
! TCTCATTCTCGTTCAAGTTC+GGG - Chr5:62697059-62697078 MsG0580027523.01.T01:CDS 40.0%
! TTGGTCTACCATTTTGCGAA+TGG - Chr5:62698738-62698757 MsG0580027523.01.T01:intron 40.0%
!! AACCGGTTTTTCACTTCCTT+TGG + Chr5:62697342-62697361 None:intergenic 40.0%
!! CGTGAAAGTGTTGTTGAAAG+AGG - Chr5:62697409-62697428 MsG0580027523.01.T01:intron 40.0%
!! TATGAAGGTGATTGGGTTGA+TGG - Chr5:62697536-62697555 MsG0580027523.01.T01:intron 40.0%
!!! GTAAGCTTTTTTGCTCACCA+GGG + Chr5:62699778-62699797 None:intergenic 40.0%
AACGAGAATGAGAACCGAAC+CGG + Chr5:62697052-62697071 None:intergenic 45.0%
AAGCAGTAATGGCAGCAAAC+AGG - Chr5:62699582-62699601 MsG0580027523.01.T01:intron 45.0%
ACACCGAAGCAAAGAGGATT+TGG + Chr5:62696895-62696914 None:intergenic 45.0%
ACAGTGGAGATTGAATCTGG+TGG - Chr5:62696820-62696839 MsG0580027523.01.T01:three_prime_UTR 45.0%
AGAAGAACACCGAAGCAAAG+AGG + Chr5:62696901-62696920 None:intergenic 45.0%
AGACCGAAGATGTGGTGAAT+GGG - Chr5:62698830-62698849 MsG0580027523.01.T01:intron 45.0%
AGCAGTAATGGCAGCAAACA+GGG - Chr5:62699583-62699602 MsG0580027523.01.T01:intron 45.0%
ATGGAATTGAAAGCTGGGCT+AGG - Chr5:62697573-62697592 MsG0580027523.01.T01:intron 45.0%
ATTGGTACTGTCGTGGTCTT+TGG - Chr5:62699330-62699349 MsG0580027523.01.T01:CDS 45.0%
CAAATACCTGAGCTGATGCA+AGG + Chr5:62698902-62698921 None:intergenic 45.0%
CAATGGTTCATAGGAGAACC+CGG - Chr5:62697362-62697381 MsG0580027523.01.T01:intron 45.0%
CAGTGGAGATTGAATCTGGT+GGG - Chr5:62696821-62696840 MsG0580027523.01.T01:three_prime_UTR 45.0%
CCAAGTGGAGAAAGCAGTAA+TGG - Chr5:62699571-62699590 MsG0580027523.01.T01:intron 45.0%
CCATTACTGCTTTCTCCACT+TGG + Chr5:62699574-62699593 None:intergenic 45.0%
CGTACAGTGGAGATTGAATC+TGG - Chr5:62696817-62696836 MsG0580027523.01.T01:three_prime_UTR 45.0%
CTCCACTTGGTCATCATTTC+GGG + Chr5:62699561-62699580 None:intergenic 45.0%
GACACTGTTATGAAGGAGCA+TGG - Chr5:62698760-62698779 MsG0580027523.01.T01:intron 45.0%
GAGAAGAGAGAATCGTACAG+TGG - Chr5:62696804-62696823 MsG0580027523.01.T01:three_prime_UTR 45.0%
GATTATGCATGTCCTGGTGT+TGG + Chr5:62697970-62697989 None:intergenic 45.0%
GCGAATGGACACTGTTATGA+AGG - Chr5:62698753-62698772 MsG0580027523.01.T01:intron 45.0%
GGCTAGGGGAAGTAGATATA+AGG - Chr5:62697589-62697608 MsG0580027523.01.T01:intron 45.0%
GTTCGTCTCATACTGAGTCA+AGG + Chr5:62698028-62698047 None:intergenic 45.0%
GTTGCTACTAGACAGCGAAA+TGG + Chr5:62699297-62699316 None:intergenic 45.0%
TACTGTCGTGGTCTTTGGTT+CGG - Chr5:62699335-62699354 MsG0580027523.01.T01:CDS 45.0%
TCCACTTGGTCATCATTTCG+GGG + Chr5:62699560-62699579 None:intergenic 45.0%
TCTGTGTTAGTGTTGTGTGC+CGG - Chr5:62697933-62697952 MsG0580027523.01.T01:CDS 45.0%
TGAGCAAAAAAGCTTACCGG+AGG - Chr5:62699781-62699800 MsG0580027523.01.T01:intron 45.0%
TGGAATTGAAAGCTGGGCTA+GGG - Chr5:62697574-62697593 MsG0580027523.01.T01:intron 45.0%
TGGTGACAATCTCACGATAC+AGG - Chr5:62696759-62696778 MsG0580027523.01.T01:three_prime_UTR 45.0%
TGGTTAAATTGCAGGCTGCT+AGG - Chr5:62699507-62699526 MsG0580027523.01.T01:intron 45.0%
TGTCCCATTCACCACATCTT+CGG + Chr5:62698836-62698855 None:intergenic 45.0%
! ACCACCACGGTTTTTATCAC+CGG + Chr5:62696743-62696762 None:intergenic 45.0%
! CAGCAACACATTTTCGGAAG+TGG + Chr5:62697198-62697217 None:intergenic 45.0%
! GGTGGAAAGTGTAATGGAAG+TGG - Chr5:62697485-62697504 MsG0580027523.01.T01:intron 45.0%
! TATGAAGGAGCATGGCATGA+AGG - Chr5:62698768-62698787 MsG0580027523.01.T01:intron 45.0%
! TCTCGTTCAAGTTCGGGTTA+TGG - Chr5:62697065-62697084 MsG0580027523.01.T01:CDS 45.0%
! TGGTTCGGGTGAGTTTAGTT+TGG + Chr5:62696875-62696894 None:intergenic 45.0%
!!! CGACTCGGTTTTTCTTCCAA+AGG - Chr5:62697323-62697342 MsG0580027523.01.T01:intron 45.0%
!!! GGTAAGCTTTTTTGCTCACC+AGG + Chr5:62699779-62699798 None:intergenic 45.0%
ACCGGTGATAAAAACCGTGG+TGG - Chr5:62696739-62696758 MsG0580027523.01.T01:three_prime_UTR 50.0%
ACGAGAATGAGAACCGAACC+GGG + Chr5:62697051-62697070 None:intergenic 50.0%
AGATGTGGTGAATGGGACAG+TGG - Chr5:62698837-62698856 MsG0580027523.01.T01:intron 50.0%
CACCAGGACATGCATAATCC+AGG - Chr5:62697971-62697990 MsG0580027523.01.T01:CDS 50.0%
CGAAATGGAGACCGAAGATG+TGG - Chr5:62698822-62698841 MsG0580027523.01.T01:intron 50.0%
CTCCTGGATTATGCATGTCC+TGG + Chr5:62697976-62697995 None:intergenic 50.0%
CTTCTTCGTTGACGGAACCT+AGG + Chr5:62696962-62696981 None:intergenic 50.0%
CTTGGTCATCATTTCGGGGA+TGG + Chr5:62699556-62699575 None:intergenic 50.0%
GAAGGTCGTCGACAAGGTTA+TGG - Chr5:62698786-62698805 MsG0580027523.01.T01:intron 50.0%
GAGACCGAAGATGTGGTGAA+TGG - Chr5:62698829-62698848 MsG0580027523.01.T01:intron 50.0%
GCAAAAAAGCTTACCGGAGG+AGG - Chr5:62699784-62699803 MsG0580027523.01.T01:intron 50.0%
GCAACCGGTGATAAAAACCG+TGG - Chr5:62696736-62696755 MsG0580027523.01.T01:three_prime_UTR 50.0%
GCTGTTCAGGATAGAATGGG+TGG - Chr5:62699638-62699657 MsG0580027523.01.T01:intron 50.0%
TCCCCGAAATGATGACCAAG+TGG - Chr5:62699556-62699575 MsG0580027523.01.T01:intron 50.0%
TCGTGAGATTGTCACCACCA+CGG + Chr5:62696756-62696775 None:intergenic 50.0%
TGCAGCAGTGAAAGCTGTTC+AGG - Chr5:62699625-62699644 MsG0580027523.01.T01:intron 50.0%
TTCGTTCTCCTCTGCTGAAC+CGG + Chr5:62697384-62697403 None:intergenic 50.0%
! GGAATTGAAAGCTGGGCTAG+GGG - Chr5:62697575-62697594 MsG0580027523.01.T01:intron 50.0%
! GTTCGGGTTATGGTTCAACC+CGG - Chr5:62697075-62697094 MsG0580027523.01.T01:CDS 50.0%
!! ACTACTGCTGCACCGATTCT+AGG - Chr5:62697107-62697126 MsG0580027523.01.T01:CDS 50.0%
!! AGGAGTGTCCGTGCTTCATA+GGG - Chr5:62697991-62698010 MsG0580027523.01.T01:intron 50.0%
!! GTTTTTATCACCGGTTGCGC+CGG + Chr5:62696734-62696753 None:intergenic 50.0%
!!! AGCTTTTTTGCTCACCAGGG+TGG + Chr5:62699775-62699794 None:intergenic 50.0%
ATTTGGAAGATGCGCCACCC+TGG - Chr5:62699758-62699777 MsG0580027523.01.T01:intron 55.0%
CTATGAAGCACGGACACTCC+TGG + Chr5:62697992-62698011 None:intergenic 55.0%
CTGGTGGGACCCACTAAAGA+TGG - Chr5:62696836-62696855 MsG0580027523.01.T01:three_prime_UTR 55.0%
GACGACACATGTCCAACACC+AGG - Chr5:62697955-62697974 MsG0580027523.01.T01:CDS 55.0%
TCGTTCTCCTCTGCTGAACC+GGG + Chr5:62697383-62697402 None:intergenic 55.0%
TCGTTGACGGAACCTAGGCT+CGG + Chr5:62696957-62696976 None:intergenic 55.0%
TGAGGCTTGGAGTGGAGGAT+CGG + Chr5:62696932-62696951 None:intergenic 55.0%
TGCAACTCTAGCAGCAGTGG+CGG + Chr5:62699609-62699628 None:intergenic 55.0%
TGCTGCAACTCTAGCAGCAG+TGG + Chr5:62699612-62699631 None:intergenic 55.0%
TGGCATGAAGGTCGTCGACA+AGG - Chr5:62698780-62698799 MsG0580027523.01.T01:intron 55.0%
TGGGTCCCACTGAACCGATA+TGG + Chr5:62697178-62697197 None:intergenic 55.0%
! GGTGTTGGACATGTGTCGTC+CGG + Chr5:62697955-62697974 None:intergenic 55.0%
!! CAGGAGTGTCCGTGCTTCAT+AGG - Chr5:62697990-62698009 MsG0580027523.01.T01:intron 55.0%
!! CGTGGTCTTTGGTTCGGTAC+TGG - Chr5:62699341-62699360 MsG0580027523.01.T01:CDS 55.0%
AGGACAGCCTGCGTTTGTGG+CGG + Chr5:62698882-62698901 None:intergenic 60.0%
AGGAGAACCCGGTTCAGCAG+AGG - Chr5:62697373-62697392 MsG0580027523.01.T01:intron 60.0%
CCAAGCCTCATTCCGAGCCT+AGG - Chr5:62696942-62696961 MsG0580027523.01.T01:three_prime_UTR 60.0%
CCTAGGCTCGGAATGAGGCT+TGG + Chr5:62696945-62696964 None:intergenic 60.0%
CGGAACCTAGGCTCGGAATG+AGG + Chr5:62696950-62696969 None:intergenic 60.0%
CGGAATGAGGCTTGGAGTGG+AGG + Chr5:62696937-62696956 None:intergenic 60.0%
CTCTCTACCGCCACAAACGC+AGG - Chr5:62698872-62698891 MsG0580027523.01.T01:intron 60.0%
GAGGCTTGGAGTGGAGGATC+GGG + Chr5:62696931-62696950 None:intergenic 60.0%
GCAAGGACAGCCTGCGTTTG+TGG + Chr5:62698885-62698904 None:intergenic 60.0%
GCTCGGAATGAGGCTTGGAG+TGG + Chr5:62696940-62696959 None:intergenic 60.0%
GGCTGTCCTTGCATCAGCTC+AGG - Chr5:62698893-62698912 MsG0580027523.01.T01:intron 60.0%
!! AGTGTCGGCGTGTCAGTGTC+AGG + Chr5:62697880-62697899 None:intergenic 60.0%
!! GTGGCGGTAGAGAGTGCTTG+AGG + Chr5:62698866-62698885 None:intergenic 60.0%
GCTTGGAGTGGAGGATCGGG+TGG + Chr5:62696928-62696947 None:intergenic 65.0%
GGAGTGGAGGATCGGGTGGT+TGG + Chr5:62696924-62696943 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 62696725 62699967 62696725 ID=MsG0580027523.01;Name=MsG0580027523.01
Chr5 mRNA 62696725 62699967 62696725 ID=MsG0580027523.01.T01;Parent=MsG0580027523.01;Name=MsG0580027523.01.T01;_AED=0.34;_eAED=0.37;_QI=0|0.33|0.5|1|1|1|4|282|321
Chr5 exon 62699912 62699967 62699912 ID=MsG0580027523.01.T01:exon:20890;Parent=MsG0580027523.01.T01
Chr5 exon 62698916 62699433 62698916 ID=MsG0580027523.01.T01:exon:20891;Parent=MsG0580027523.01.T01
Chr5 exon 62697778 62698004 62697778 ID=MsG0580027523.01.T01:exon:20892;Parent=MsG0580027523.01.T01
Chr5 exon 62696725 62697171 62696725 ID=MsG0580027523.01.T01:exon:20893;Parent=MsG0580027523.01.T01
Chr5 CDS 62699912 62699967 62699912 ID=MsG0580027523.01.T01:cds;Parent=MsG0580027523.01.T01
Chr5 CDS 62698916 62699433 62698916 ID=MsG0580027523.01.T01:cds;Parent=MsG0580027523.01.T01
Chr5 CDS 62697778 62698004 62697778 ID=MsG0580027523.01.T01:cds;Parent=MsG0580027523.01.T01
Chr5 CDS 62697007 62697171 62697007 ID=MsG0580027523.01.T01:cds;Parent=MsG0580027523.01.T01
Chr5 three_prime_UTR 62696725 62697006 62696725 ID=MsG0580027523.01.T01:three_prime_utr;Parent=MsG0580027523.01.T01
Gene Sequence

>MsG0580027523.01.T01

ATGTTACCGGCGCAACCGGTGATAAAAACCGTGGTGGTGACAATCTCACGATACAGAAACAAACGCGTGATTCATAGAACCGTTTCGGTTTTAAAACATTCATGGGACGGGAATTTAAAACGACTCGGTTTTTCTTCCAAAGGAAGTGAAAAACCGGTTCAATGGTTCATAGGAGAACCCGGTTCAGCAGAGGAGAACGAAAAGAACGTGAAAGTGTTGTTGAAAGAGGGTGTTGAAGTTGAATTCTACAGCAATGGTGATTTCTACGAAGGAGAATTTCATGGTGGAAAGTGTAATGGAAGTGGAGTTTATCATTATTTTGTGAGTGGAAGATATGAAGGTGATTGGGTTGATGGAAAATATGATGGTTATGGAATTGAAAGCTGGGCTAGGGGAAGTAGATATAAGGGTTGTTATAAACAAGGTTTGAGACATGGTTATGGTGTTTATGGATTTTATACTGGTGATTGTTATTCTGGTGAATGGTTTAATGGACAAAGTCATGGTTTTGGTGTTCAATCTTGTTCTGATGGAAGTTGTTATGTTGGTGAATTTAAGTTTGGTTCTAAACATGGAATGGAGATAAATATACAGGGGAGTATTTTGGAGACAAAATGCATGGATTTGGTCTACCATTTTGCGAATGGACACTGTTATGAAGGAGCATGGCATGAAGGTCGTCGACAAGGTTATGGTGTTTATACATTTCGAAATGGAGACCGAAGATGTGGTGAATGGGACAGTGGTGACCTCAAGCACTCTCTACCGCCACAAACGCAGGCTGTCCTTGCATCAGCTCAGGCTGCTAGGAGAACAGCAGAAAATGCGATAAACCATCCCCGAAATGATGACCAAGTGGAGAAAGCAGTAATGGCAGCAAACAGGGCCGCCACTGCTGCTAGAGTTGCAGCAGTGAAAGCTGTTCAGGATAGAATGGGTGGAAAATTTTGCGATGATCAAGTTTAA
Protein sequence

>MsG0580027523.01.T01

MLPAQPVIKTVVVTISRYRNKRVIHRTVSVLKHSWDGNLKRLGFSSKGSEKPVQWFIGEPGSAEENEKNVKVLLKEGVEVEFYSNGDFYEGEFHGGKCNGSGVYHYFVSGRYEGDWVDGKYDGYGIESWARGSRYKGCYKQGLRHGYGVYGFYTGDCYSGEWFNGQSHGFGVQSCSDGSCYVGEFKFGSKHGMEINIQGSILETKCMDLVYHFANGHCYEGAWHEGRRQGYGVYTFRNGDRRCGEWDSGDLKHSLPPQTQAVLASAQAARRTAENAINHPRNDDQVEKAVMAANRAATAARVAAVKAVQDRMGGKFCDDQV*