AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027793.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027793.01.T01 MTR_4g130820 57.399 446 120 10 30 423 300 727 4.00e-163 477
MsG0580027793.01.T01 MTR_3g091080 47.427 447 160 9 32 423 284 710 3.99e-128 386
MsG0580027793.01.T01 MTR_1g028370 47.778 450 163 11 32 428 286 716 1.14e-127 385
MsG0580027793.01.T01 MTR_2g460590 46.711 456 170 8 32 428 250 691 2.45e-126 381
MsG0580027793.01.T01 MTR_2g094860 46.712 441 171 13 30 422 277 701 2.15e-119 363
MsG0580027793.01.T01 MTR_1g064240 46.711 456 166 17 31 426 272 710 3.89e-116 355
MsG0580027793.01.T01 MTR_7g034605 45.495 444 176 12 33 422 247 678 4.97e-116 354
MsG0580027793.01.T01 MTR_3g109030 45.212 449 182 9 32 423 280 721 1.50e-115 354
MsG0580027793.01.T01 MTR_4g058730 50.954 367 126 8 30 350 259 617 2.01e-112 343
MsG0580027793.01.T01 MTR_3g088875 42.151 465 188 12 33 427 239 692 6.60e-111 341
MsG0580027793.01.T01 MTR_8g027755 42.404 441 190 9 33 421 289 717 2.54e-109 338
MsG0580027793.01.T01 MTR_7g117310 44.643 448 172 11 33 423 233 661 2.29e-107 331
MsG0580027793.01.T01 MTR_7g117310 44.643 448 172 11 33 423 287 715 4.66e-107 332
MsG0580027793.01.T01 MTR_7g117310 44.643 448 172 11 33 423 299 727 6.37e-107 332
MsG0580027793.01.T01 MTR_2g081110 32.337 368 190 9 33 348 263 623 1.33e-54 192
MsG0580027793.01.T01 MTR_7g012260 33.973 365 192 8 32 350 316 677 3.73e-54 192
MsG0580027793.01.T01 MTR_8g464570 33.425 365 189 9 33 348 268 627 5.51e-54 191
MsG0580027793.01.T01 MTR_6g075290 35.185 378 186 10 31 356 352 722 2.67e-46 170
MsG0580027793.01.T01 MTR_6g075290 35.185 378 186 10 31 356 191 561 4.82e-46 167
MsG0580027793.01.T01 MTR_6g075290 35.185 378 186 10 31 356 393 763 6.02e-46 169
MsG0580027793.01.T01 MTR_6g477760 34.574 376 182 14 31 350 325 692 4.19e-44 164
MsG0580027793.01.T01 MTR_6g075440 30.597 402 204 12 31 370 371 759 5.17e-44 164
MsG0580027793.01.T01 MTR_6g075440 30.691 391 199 12 31 365 371 745 1.20e-43 163
MsG0580027793.01.T01 MTR_5g007630 31.948 385 191 13 31 362 371 737 2.80e-40 153
MsG0580027793.01.T01 MTR_6g076060 32.514 366 184 12 31 343 99 454 1.53e-36 140
MsG0580027793.01.T01 MTR_6g075390 40.404 198 113 3 82 277 360 554 2.49e-31 127
MsG0580027793.01.T01 MTR_6g075410 28.763 372 198 14 33 351 303 660 1.01e-25 110
MsG0580027793.01.T01 MTR_3g108320 26.220 164 120 1 108 271 243 405 1.26e-12 70.1
MsG0580027793.01.T01 MTR_3g108320 26.220 164 120 1 108 271 243 405 1.29e-12 70.1
MsG0580027793.01.T01 MTR_3g108320 26.220 164 120 1 108 271 243 405 1.37e-12 70.1
MsG0580027793.01.T01 MTR_4g113530 25.806 155 114 1 107 260 239 393 1.55e-11 67.0
MsG0580027793.01.T01 MTR_5g077770 23.429 175 131 2 102 276 277 448 2.03e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027793.01.T01 AT1G19780 59.868 456 124 10 30 428 87 540 6.13e-171 490
MsG0580027793.01.T01 AT1G19780 59.868 456 124 10 30 428 298 751 1.30e-168 491
MsG0580027793.01.T01 AT1G15990 60.444 450 118 11 30 423 292 737 5.63e-167 487
MsG0580027793.01.T01 AT4G30560 55.134 448 123 9 31 423 279 703 8.59e-158 462
MsG0580027793.01.T01 AT4G30560 55.134 448 123 9 31 423 279 703 8.59e-158 462
MsG0580027793.01.T01 AT4G30560 55.134 448 123 9 31 423 279 703 8.59e-158 462
MsG0580027793.01.T01 AT5G57940 54.176 443 139 7 30 423 282 709 1.67e-157 462
MsG0580027793.01.T01 AT4G30560 55.134 448 123 9 31 423 305 729 2.11e-157 462
MsG0580027793.01.T01 AT4G30560 55.134 448 123 9 31 423 305 729 2.11e-157 462
MsG0580027793.01.T01 AT5G57940 54.176 443 139 7 30 423 289 716 2.58e-157 461
MsG0580027793.01.T01 AT5G57940 54.176 443 139 7 30 423 289 716 2.58e-157 461
MsG0580027793.01.T01 AT2G23980 54.204 452 139 10 29 423 277 717 3.11e-157 461
MsG0580027793.01.T01 AT2G23980 53.880 451 141 9 30 423 304 744 5.13e-157 462
MsG0580027793.01.T01 AT2G23980 53.880 451 141 9 30 423 304 744 5.13e-157 462
MsG0580027793.01.T01 AT2G23980 53.880 451 141 9 30 423 304 744 5.13e-157 462
MsG0580027793.01.T01 AT2G23980 53.880 451 141 9 30 423 304 744 5.13e-157 462
MsG0580027793.01.T01 AT2G23980 53.880 451 141 9 30 423 304 744 5.13e-157 462
MsG0580027793.01.T01 AT2G23980 54.204 452 139 10 29 423 327 767 1.75e-156 461
MsG0580027793.01.T01 AT2G23980 54.204 452 139 10 29 423 327 767 1.75e-156 461
MsG0580027793.01.T01 AT2G23980 54.204 452 139 10 29 423 327 767 1.75e-156 461
MsG0580027793.01.T01 AT2G23980 54.204 452 139 10 29 423 327 767 1.75e-156 461
MsG0580027793.01.T01 AT1G01340 46.120 451 170 8 31 423 270 705 1.19e-129 390
MsG0580027793.01.T01 AT1G01340 46.120 451 170 8 31 423 265 700 1.51e-129 390
MsG0580027793.01.T01 AT4G01010 46.667 450 161 10 31 425 270 695 7.01e-128 385
MsG0580027793.01.T01 AT4G01010 46.667 450 161 10 31 425 270 695 7.01e-128 385
MsG0580027793.01.T01 AT5G53130 47.534 446 162 11 32 423 287 714 4.27e-123 374
MsG0580027793.01.T01 AT2G46430 43.973 448 174 9 31 421 274 701 5.68e-121 368
MsG0580027793.01.T01 AT2G46430 43.973 448 174 9 31 421 274 701 5.68e-121 368
MsG0580027793.01.T01 AT2G28260 46.241 439 162 9 30 423 228 637 3.53e-118 358
MsG0580027793.01.T01 AT2G24610 46.288 458 170 14 32 423 277 724 4.58e-118 361
MsG0580027793.01.T01 AT2G28260 46.469 439 161 11 30 423 268 677 7.17e-118 359
MsG0580027793.01.T01 AT2G24610 46.288 458 170 14 32 423 292 739 1.45e-117 360
MsG0580027793.01.T01 AT4G30360 46.325 449 182 10 32 427 278 720 2.51e-116 356
MsG0580027793.01.T01 AT5G14870 43.319 464 185 11 32 422 242 700 1.67e-114 351
MsG0580027793.01.T01 AT3G48010 41.595 464 188 12 33 421 249 704 2.79e-108 335
MsG0580027793.01.T01 AT2G46440 39.225 413 177 10 32 390 51 443 4.40e-84 265
MsG0580027793.01.T01 AT2G46450 35.927 437 203 14 33 419 194 603 3.08e-82 265
MsG0580027793.01.T01 AT2G46450 35.927 437 203 14 33 419 207 616 4.37e-82 265
MsG0580027793.01.T01 AT2G46440 39.423 416 172 10 32 390 229 621 6.77e-82 264
MsG0580027793.01.T01 AT2G46450 35.927 437 203 14 33 419 230 639 7.04e-82 265
MsG0580027793.01.T01 AT2G46450 35.927 437 203 14 33 419 230 639 7.04e-82 265
MsG0580027793.01.T01 AT5G54250 32.320 362 196 7 33 348 290 648 5.40e-54 191
MsG0580027793.01.T01 AT5G54250 32.320 362 196 7 33 348 290 648 5.40e-54 191
MsG0580027793.01.T01 AT5G54250 32.320 362 196 7 33 348 290 648 5.40e-54 191
MsG0580027793.01.T01 AT5G15410 33.518 361 186 8 32 342 321 677 2.21e-51 184
MsG0580027793.01.T01 AT5G15410 33.518 361 186 8 32 342 320 676 2.65e-51 184
MsG0580027793.01.T01 AT3G17690 36.499 337 158 10 62 351 392 719 1.89e-50 182
MsG0580027793.01.T01 AT5G54250 31.215 362 195 8 33 348 290 643 8.67e-49 177
MsG0580027793.01.T01 AT3G17690 42.593 216 115 5 62 277 392 598 2.50e-45 166
MsG0580027793.01.T01 AT3G17700 33.241 361 183 9 31 342 394 745 5.06e-43 161
MsG0580027793.01.T01 AT3G17700 38.462 247 143 4 31 277 394 631 1.45e-41 156
MsG0580027793.01.T01 AT3G17690 42.857 133 68 4 62 194 392 516 1.49e-22 100

Find 100 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCATAGTAATAGCTATTA+TGG 0.126403 5:-68562261 MsG0580027793.01.T01:CDS
GGTGGGGACTTCAGAATTTA+AGG 0.170474 5:-68562718 MsG0580027793.01.T01:intron
CCTCAAAGTTCGTCAAAATT+TGG 0.172842 5:-68561233 MsG0580027793.01.T01:CDS
CCATAGACAGTAACAAAATT+TGG 0.208171 5:+68562739 None:intergenic
TTCTGCAAGGGCGTTGGTTC+CGG 0.218060 5:-68561258 MsG0580027793.01.T01:CDS
CTGCATGGAGGAAGCATTTA+AGG 0.231374 5:-68561340 MsG0580027793.01.T01:CDS
ATATCTCTTCTAAGATCTTT+TGG 0.250851 5:+68561929 None:intergenic
TCGTTGTTATACCCTAATTT+TGG 0.264634 5:+68562986 None:intergenic
CAGAGCTAACTTACATAGTT+AGG 0.270296 5:-68561683 MsG0580027793.01.T01:CDS
AGGGGTCGATGAAGAAAATT+TGG 0.285665 5:-68561963 MsG0580027793.01.T01:CDS
CCCCATAATAGCTATTACTA+TGG 0.288425 5:+68562259 None:intergenic
TCTGCAAGGGCGTTGGTTCC+GGG 0.297464 5:-68561257 MsG0580027793.01.T01:CDS
AAATTTGGGGAAAACTTCTA+TGG 0.302110 5:+68562754 None:intergenic
GGTAAGCTTGCTGCAGATTT+CGG 0.312874 5:+68561508 None:intergenic
CATAGACAGTAACAAAATTT+GGG 0.315147 5:+68562740 None:intergenic
GTGCTCTTTGCTCTTCTGAT+TGG 0.318517 5:-68562233 MsG0580027793.01.T01:CDS
TCCATAGTAATAGCTATTAT+GGG 0.333113 5:-68562260 MsG0580027793.01.T01:CDS
AATCAGGTTCTGAGGGCTTT+GGG 0.347993 5:+68561120 None:intergenic
AAATCAGGTTCTGAGGGCTT+TGG 0.350213 5:+68561119 None:intergenic
TCAATCAATGTCGGTTCGTC+TGG 0.370374 5:-68562101 MsG0580027793.01.T01:CDS
ATACAACAGTCTATGCTTCT+CGG 0.384722 5:-68561205 MsG0580027793.01.T01:CDS
ATGAACAACATCTCATCAAC+TGG 0.395916 5:+68561651 None:intergenic
TCATTGAGAGCACTGAAATC+AGG 0.396573 5:+68561104 None:intergenic
CGGTTTGCTGCTAATCTTCG+TGG 0.417955 5:-68561185 MsG0580027793.01.T01:CDS
AGCCAAGTTCTTGTTGATGA+TGG 0.433203 5:+68561487 None:intergenic
AAAGGATGGGAAGAAAGATT+TGG 0.440677 5:-68566262 MsG0580027793.01.T01:intron
TCCATTGTTGCGAATAGAAA+CGG 0.447494 5:+68561390 None:intergenic
GCATCATCGCTTGCTTCATC+CGG 0.453812 5:-68562038 MsG0580027793.01.T01:CDS
GGGTGTTCAACCACTTGTAT+TGG 0.454525 5:+68561987 None:intergenic
ATGGAAAACAAAACCTCTCC+AGG 0.456409 5:+68562278 None:intergenic
GCTTGCTTCATCCGGACCTA+AGG 0.479768 5:-68562030 MsG0580027793.01.T01:CDS
TTCACCAGCTCTCTTGAACT+TGG 0.484399 5:+68561146 None:intergenic
AACGTCTGACTCTTTCCCTT+AGG 0.491093 5:+68562014 None:intergenic
CTGACTCTTTCCCTTAGGTC+CGG 0.499158 5:+68562019 None:intergenic
GAAAGCATGTAAAGAAGTTG+AGG 0.502958 5:-68562951 MsG0580027793.01.T01:CDS
GGTATAACAACGACACATGC+TGG 0.503068 5:-68562976 MsG0580027793.01.T01:CDS
GGTTCCTCTCTTTGCTAACA+TGG 0.504157 5:-68561757 MsG0580027793.01.T01:CDS
AATTCACATTTCTTGTATTG+TGG 0.506801 5:-68562923 MsG0580027793.01.T01:CDS
TACCATCATCAACAAGAACT+TGG 0.507234 5:-68561489 MsG0580027793.01.T01:CDS
AGAGCTAACTTACATAGTTA+GGG 0.516640 5:-68561682 MsG0580027793.01.T01:CDS
TTTGTTTGAATTTAGTCAGA+AGG 0.518058 5:-68561895 MsG0580027793.01.T01:CDS
ATGAAAGAGCGAAGAAAGGA+TGG 0.519047 5:-68566276 MsG0580027793.01.T01:CDS
TACGATGAAAGAGCGAAGAA+AGG 0.520087 5:-68566280 MsG0580027793.01.T01:CDS
TGATGATTCTGCAAGGGCGT+TGG 0.522448 5:-68561264 MsG0580027793.01.T01:CDS
ATTCGCAACAATGGAGAACA+TGG 0.522904 5:-68561382 MsG0580027793.01.T01:CDS
GACGAACCGACATTGATTGA+AGG 0.524267 5:+68562104 None:intergenic
TGGAGGAAATGAGGATCAAA+AGG 0.526808 5:-68562081 MsG0580027793.01.T01:CDS
TCCGTTTCTATTCGCAACAA+TGG 0.528384 5:-68561391 MsG0580027793.01.T01:CDS
AGAGTTGCTAACATGGGCAT+TGG 0.533440 5:-68561533 MsG0580027793.01.T01:CDS
TTTCACAGTACACTTGGTCA+GGG 0.537219 5:-68562320 MsG0580027793.01.T01:intron
AGTTCAAGTAAGCATATACC+AGG 0.542819 5:-68562899 MsG0580027793.01.T01:CDS
TAGACACATACATAGTAGAC+AGG 0.544177 5:-68561426 MsG0580027793.01.T01:CDS
ATCAATGTCGGTTCGTCTGG+AGG 0.548219 5:-68562098 MsG0580027793.01.T01:CDS
TTGTTTGAATTTAGTCAGAA+GGG 0.551796 5:-68561894 MsG0580027793.01.T01:intron
GCACTGAAATCAGGTTCTGA+GGG 0.551873 5:+68561113 None:intergenic
AGCACTGAAATCAGGTTCTG+AGG 0.553944 5:+68561112 None:intergenic
TTTGACGAACTTTGAGGACC+CGG 0.557037 5:+68561239 None:intergenic
AAAGCATGTAAAGAAGTTGA+GGG 0.558423 5:-68562950 MsG0580027793.01.T01:CDS
CTTGCTTCATCCGGACCTAA+GGG 0.561160 5:-68562029 MsG0580027793.01.T01:CDS
CGGTTCGTCTGGAGGAAATG+AGG 0.562037 5:-68562090 MsG0580027793.01.T01:CDS
AGTACCAAGTTCAAGAGAGC+TGG 0.565279 5:-68561150 MsG0580027793.01.T01:CDS
TCTTCTGATTGGAAACATGC+AGG 0.565687 5:-68562222 MsG0580027793.01.T01:intron
GAACTTGGCTTTAGAAGCAG+AGG 0.574377 5:-68561474 MsG0580027793.01.T01:CDS
CTTGCAGAATCATCACTACC+CGG 0.576418 5:+68561272 None:intergenic
TTCACAGTACACTTGGTCAG+GGG 0.577586 5:-68562319 MsG0580027793.01.T01:intron
TTTAAGGCGAAGGCGAAGGA+AGG 0.579780 5:-68561324 MsG0580027793.01.T01:CDS
CCATAGTAATAGCTATTATG+GGG 0.581237 5:-68562259 MsG0580027793.01.T01:CDS
ATACTACGAATCTGATTACC+CGG 0.586401 5:-68561291 MsG0580027793.01.T01:CDS
AGCATTTAAGGCGAAGGCGA+AGG 0.589667 5:-68561328 MsG0580027793.01.T01:CDS
CAATCTATATTCAAGCTGCA+TGG 0.590954 5:-68561355 MsG0580027793.01.T01:CDS
GGAGGAAGCATTTAAGGCGA+AGG 0.591557 5:-68561334 MsG0580027793.01.T01:CDS
GCGATGATGCATCCACTGCT+CGG 0.598686 5:+68562051 None:intergenic
GTTAGCTCTGTATATAAACT+CGG 0.602502 5:+68561696 None:intergenic
ATATACCAGGGTATGACAGT+TGG 0.606713 5:-68562886 MsG0580027793.01.T01:CDS
GACCTACCTTCAATCAATGT+CGG 0.613772 5:-68562110 MsG0580027793.01.T01:CDS
AAGGCGAAGGCGAAGGAAGG+AGG 0.615424 5:-68561321 MsG0580027793.01.T01:CDS
CGGGTAGTGATGATTCTGCA+AGG 0.619026 5:-68561271 MsG0580027793.01.T01:CDS
AAAGGCGTGACTCCGAGCAG+TGG 0.621729 5:-68562063 MsG0580027793.01.T01:CDS
AAACAAAACCTCTCCAGGGT+AGG 0.625990 5:+68562283 None:intergenic
GTGGTGAAGAGTTGCTAACA+TGG 0.626286 5:-68561540 MsG0580027793.01.T01:intron
GACGTTACGACCAATACAAG+TGG 0.629041 5:-68561997 MsG0580027793.01.T01:CDS
AACTAGTACCTACCCTGGAG+AGG 0.630397 5:-68562291 MsG0580027793.01.T01:CDS
TACAAGTGGTTGAACACCCG+AGG 0.630986 5:-68561983 MsG0580027793.01.T01:CDS
CTAACTTACATAGTTAGGGA+AGG 0.640332 5:-68561678 MsG0580027793.01.T01:CDS
TGGAAAACAAAACCTCTCCA+GGG 0.644846 5:+68562279 None:intergenic
TCGTCCATGTTAGCAAAGAG+AGG 0.645418 5:+68561753 None:intergenic
TGAAAGAGCGAAGAAAGGAT+GGG 0.648017 5:-68566275 MsG0580027793.01.T01:CDS
GGGTAGTGATGATTCTGCAA+GGG 0.648289 5:-68561270 MsG0580027793.01.T01:CDS
TTGCAGAATCATCACTACCC+GGG 0.652759 5:+68561273 None:intergenic
TTTCTCCAACTGTCATACCC+TGG 0.659364 5:+68562881 None:intergenic
CTTCTAACTAGTACCTACCC+TGG 0.665663 5:-68562296 MsG0580027793.01.T01:CDS
ATAGACAGTAACAAAATTTG+GGG 0.668163 5:+68562741 None:intergenic
ACAAGTGGTTGAACACCCGA+GGG 0.676415 5:-68561982 MsG0580027793.01.T01:CDS
TTCGCAACAATGGAGAACAT+GGG 0.684012 5:-68561381 MsG0580027793.01.T01:CDS
TGGTGAAGAGTTGCTAACAT+GGG 0.697702 5:-68561539 MsG0580027793.01.T01:intron
AACCGACATTGATTGAAGGT+AGG 0.702813 5:+68562108 None:intergenic
TCTATATTCAAGCTGCATGG+AGG 0.707083 5:-68561352 MsG0580027793.01.T01:CDS
TACTACGAATCTGATTACCC+GGG 0.718885 5:-68561290 MsG0580027793.01.T01:CDS
GTTCAAGTAAGCATATACCA+GGG 0.749555 5:-68562898 MsG0580027793.01.T01:CDS
CAAGTGGTTGAACACCCGAG+GGG 0.768003 5:-68561981 MsG0580027793.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATTAATAATAAAAT+TGG - Chr5:68561902-68561921 MsG0580027793.01.T01:CDS 0.0%
!! AATAGTATATATATAAAGTA+AGG - Chr5:68562286-68562305 MsG0580027793.01.T01:CDS 10.0%
!!! ATTTGATTTTTAGAATTTTT+TGG - Chr5:68563491-68563510 MsG0580027793.01.T01:intron 10.0%
!!! TATTTTATTTAACAAAAATC+GGG - Chr5:68563270-68563289 MsG0580027793.01.T01:intron 10.0%
!! AAATATATATGTATTAGTGT+CGG - Chr5:68564807-68564826 MsG0580027793.01.T01:intron 15.0%
!! ATATTTATAAAGGATGATAT+AGG + Chr5:68564978-68564997 None:intergenic 15.0%
!!! AAAACTAATCGAAATTTTTT+CGG + Chr5:68563471-68563490 None:intergenic 15.0%
!!! ACAATTTTTAGAATTTAATC+AGG - Chr5:68562174-68562193 MsG0580027793.01.T01:intron 15.0%
!!! AGAATTGAATAAGTATTTTT+AGG - Chr5:68564391-68564410 MsG0580027793.01.T01:intron 15.0%
!!! AGTTTTTTGTTGTTTTTAAA+AGG - Chr5:68563569-68563588 MsG0580027793.01.T01:intron 15.0%
!!! ATTGTTTTAGTCTTTTAAAT+TGG + Chr5:68564229-68564248 None:intergenic 15.0%
!!! TTTAAAATGGATTTTTAACA+GGG - Chr5:68562107-68562126 MsG0580027793.01.T01:CDS 15.0%
!!! TTTTAAAATGGATTTTTAAC+AGG - Chr5:68562106-68562125 MsG0580027793.01.T01:CDS 15.0%
!!! TTTTTATGATTTTATTTGAC+AGG - Chr5:68563527-68563546 MsG0580027793.01.T01:intron 15.0%
!! AAAAATATTGAGAATGAATG+TGG + Chr5:68562335-68562354 None:intergenic 20.0%
!! AACGATTAAAATTGACAAAA+CGG - Chr5:68561959-68561978 MsG0580027793.01.T01:CDS 20.0%
!! AACTTATTTAATATCTAACC+CGG - Chr5:68563992-68564011 MsG0580027793.01.T01:intron 20.0%
!! ACTTATTCAAACTATTTGAA+AGG - Chr5:68564054-68564073 MsG0580027793.01.T01:intron 20.0%
!! AGAAAATCAGAAAAAATTCA+AGG - Chr5:68563332-68563351 MsG0580027793.01.T01:intron 20.0%
!! GAATCAAAGCATATTTATAA+AGG + Chr5:68564988-68565007 None:intergenic 20.0%
!! GTTTATTTAAACCAATTTGA+AGG - Chr5:68562143-68562162 MsG0580027793.01.T01:intron 20.0%
!!! ACTGAAAGAAATTTTTTCAT+GGG - Chr5:68564099-68564118 MsG0580027793.01.T01:intron 20.0%
!!! CTATTTCAGATTTTATAATC+CGG + Chr5:68563654-68563673 None:intergenic 20.0%
!!! CTTCAAATGCAATTTTAAAA+TGG - Chr5:68562252-68562271 MsG0580027793.01.T01:CDS 20.0%
!!! GATTTTTGATCGAAAAATTT+GGG - Chr5:68561624-68561643 MsG0580027793.01.T01:intron 20.0%
!!! GCATTTTTAAAAATTTTACG+GGG - Chr5:68563714-68563733 MsG0580027793.01.T01:intron 20.0%
!!! GGCATTTTTAAAAATTTTAC+GGG - Chr5:68563713-68563732 MsG0580027793.01.T01:intron 20.0%
!!! GGGCATTTTTAAAAATTTTA+CGG - Chr5:68563712-68563731 MsG0580027793.01.T01:intron 20.0%
!!! TATTTTTAGGTCCAAAATTA+GGG - Chr5:68564404-68564423 MsG0580027793.01.T01:intron 20.0%
!!! TGAATCCTAATTTTAAAATC+CGG - Chr5:68563680-68563699 MsG0580027793.01.T01:intron 20.0%
!!! TGAATTTTTTCTGATTTTCT+GGG + Chr5:68563332-68563351 None:intergenic 20.0%
!!! TTATAAACTGAGTGTTTTAT+AGG + Chr5:68564769-68564788 None:intergenic 20.0%
!!! TTGAATTTTTTCTGATTTTC+TGG + Chr5:68563333-68563352 None:intergenic 20.0%
! AAATGCAAACAATGACAAAA+AGG - Chr5:68561874-68561893 MsG0580027793.01.T01:intron 25.0%
! AAGTAATAGTCCATGTTTAA+AGG - Chr5:68563762-68563781 MsG0580027793.01.T01:intron 25.0%
! AATTCACATTTCTTGTATTG+TGG - Chr5:68564478-68564497 MsG0580027793.01.T01:intron 25.0%
! AATTGGTAAAAAACGTAACT+TGG - Chr5:68561919-68561938 MsG0580027793.01.T01:CDS 25.0%
! ACTTATTTAATATCTAACCC+GGG - Chr5:68563993-68564012 MsG0580027793.01.T01:intron 25.0%
! ATAGACAGTAACAAAATTTG+GGG + Chr5:68564663-68564682 None:intergenic 25.0%
! ATTTGCAAAATTCACATAGA+AGG + Chr5:68564297-68564316 None:intergenic 25.0%
! CATAGACAGTAACAAAATTT+GGG + Chr5:68564664-68564683 None:intergenic 25.0%
! GATTAAAATGAATTGAATGC+AGG - Chr5:68564256-68564275 MsG0580027793.01.T01:intron 25.0%
! GATTATACATAAGAATTGTC+CGG - Chr5:68563632-68563651 MsG0580027793.01.T01:intron 25.0%
! GTGTATGACATATATTATTC+AGG - Chr5:68565623-68565642 MsG0580027793.01.T01:intron 25.0%
! TCCATAGTAATAGCTATTAT+GGG - Chr5:68565141-68565160 MsG0580027793.01.T01:intron 25.0%
! TTCCATAGTAATAGCTATTA+TGG - Chr5:68565140-68565159 MsG0580027793.01.T01:intron 25.0%
! TTGTTTGAATTTAGTCAGAA+GGG - Chr5:68565507-68565526 MsG0580027793.01.T01:intron 25.0%
! TTTGCAAAATTCACATAGAA+GGG + Chr5:68564296-68564315 None:intergenic 25.0%
! TTTGTTTGAATTTAGTCAGA+AGG - Chr5:68565506-68565525 MsG0580027793.01.T01:intron 25.0%
!! GGATTTTTGATCGAAAAATT+TGG - Chr5:68561623-68561642 MsG0580027793.01.T01:intron 25.0%
!! TTTAACAAAAATCGGGTTTT+CGG - Chr5:68563277-68563296 MsG0580027793.01.T01:intron 25.0%
!!! ACATTCCGGATTTTAAAATT+AGG + Chr5:68563688-68563707 None:intergenic 25.0%
!!! ATATCTCTTCTAAGATCTTT+TGG + Chr5:68565475-68565494 None:intergenic 25.0%
!!! GAATTTTTTCTGATTTTCTG+GGG + Chr5:68563331-68563350 None:intergenic 25.0%
!!! GACTGAAAGAAATTTTTTCA+TGG - Chr5:68564098-68564117 MsG0580027793.01.T01:intron 25.0%
!!! GTATTTTTAGGTCCAAAATT+AGG - Chr5:68564403-68564422 MsG0580027793.01.T01:intron 25.0%
AAAGCATGTAAAGAAGTTGA+GGG - Chr5:68564451-68564470 MsG0580027793.01.T01:intron 30.0%
AAATTTGGGGAAAACTTCTA+TGG + Chr5:68564650-68564669 None:intergenic 30.0%
AAGCAAAACAGAAGGATATT+TGG + Chr5:68565062-68565081 None:intergenic 30.0%
AGAGCTAACTTACATAGTTA+GGG - Chr5:68565719-68565738 MsG0580027793.01.T01:intron 30.0%
ATGGCTAATGTGAAAAACAT+AGG + Chr5:68564836-68564855 None:intergenic 30.0%
ATTGTAGATTCACTTGATGA+TGG - Chr5:68564947-68564966 MsG0580027793.01.T01:intron 30.0%
CAATAATGAATTAGTCCAAG+TGG + Chr5:68563802-68563821 None:intergenic 30.0%
CCATAGACAGTAACAAAATT+TGG + Chr5:68564665-68564684 None:intergenic 30.0%
CCATAGTAATAGCTATTATG+GGG - Chr5:68565142-68565161 MsG0580027793.01.T01:intron 30.0%
CTGCAAATGACTAGAAATAA+AGG - Chr5:68561847-68561866 MsG0580027793.01.T01:intron 30.0%
TTAAAATCCGGAATGTACAA+GGG - Chr5:68563692-68563711 MsG0580027793.01.T01:intron 30.0%
TTTGACATGAGATTGAAACA+GGG - Chr5:68564192-68564211 MsG0580027793.01.T01:intron 30.0%
TTTGTTTGTGACTGAATTGA+TGG - Chr5:68561487-68561506 MsG0580027793.01.T01:CDS 30.0%
! AATTTTGTTACTGTCTATGG+TGG - Chr5:68564665-68564684 MsG0580027793.01.T01:intron 30.0%
! ACCTTCAATATTTGTTGAAC+TGG - Chr5:68561432-68561451 MsG0580027793.01.T01:CDS 30.0%
! ATGGAATTTTGGATTTTGAG+GGG + Chr5:68563397-68563416 None:intergenic 30.0%
! ATTTTGTTACTGTCTATGGT+GGG - Chr5:68564666-68564685 MsG0580027793.01.T01:intron 30.0%
! CCAAATTTTGTTACTGTCTA+TGG - Chr5:68564662-68564681 MsG0580027793.01.T01:intron 30.0%
! CCTTCAATATTTGTTGAACT+GGG - Chr5:68561433-68561452 MsG0580027793.01.T01:CDS 30.0%
! GATGGAATTTTGGATTTTGA+GGG + Chr5:68563398-68563417 None:intergenic 30.0%
! TCGTTGTTATACCCTAATTT+TGG + Chr5:68564418-68564437 None:intergenic 30.0%
! TTAACAAAAATCGGGTTTTC+GGG - Chr5:68563278-68563297 MsG0580027793.01.T01:intron 30.0%
! TTGTAGATTCACTTGATGAT+GGG - Chr5:68564948-68564967 MsG0580027793.01.T01:intron 30.0%
! TTTAAAATCCGGAATGTACA+AGG - Chr5:68563691-68563710 MsG0580027793.01.T01:intron 30.0%
! TTTTGACATGAGATTGAAAC+AGG - Chr5:68564191-68564210 MsG0580027793.01.T01:intron 30.0%
!! GATAACTCAGCTTTTAACTA+TGG - Chr5:68564586-68564605 MsG0580027793.01.T01:intron 30.0%
!! GTTAGCTCTGTATATAAACT+CGG + Chr5:68565708-68565727 None:intergenic 30.0%
!! GTTTTATAGGTGTTATGAAG+AGG + Chr5:68564756-68564775 None:intergenic 30.0%
!!! AGTGAAATGTGTTTTTGAGT+TGG - Chr5:68561655-68561674 MsG0580027793.01.T01:intron 30.0%
AAAAATGCCCTTGTACATTC+CGG + Chr5:68563702-68563721 None:intergenic 35.0%
AAAAGACTAAAATACCCCTG+GGG - Chr5:68562210-68562229 MsG0580027793.01.T01:intron 35.0%
AAAGGATGGGAAGAAAGATT+TGG - Chr5:68561139-68561158 MsG0580027793.01.T01:CDS 35.0%
AAATGACTAAAATGCCCCTA+GGG - Chr5:68564122-68564141 MsG0580027793.01.T01:intron 35.0%
AAGAAGAGAAACAGATCGAA+AGG + Chr5:68561225-68561244 None:intergenic 35.0%
AAGTACCTCATTTAAGCCAT+TGG + Chr5:68561996-68562015 None:intergenic 35.0%
ACTGAGTGCATAAGATCAAA+AGG + Chr5:68562399-68562418 None:intergenic 35.0%
ACTGGACTTAACAAACTTTC+TGG - Chr5:68561818-68561837 MsG0580027793.01.T01:intron 35.0%
ACTGTGAAAAGCAAAACAGA+AGG + Chr5:68565070-68565089 None:intergenic 35.0%
AGTTCAAGTAAGCATATACC+AGG - Chr5:68564502-68564521 MsG0580027793.01.T01:intron 35.0%
ATACAACAGTCTATGCTTCT+CGG - Chr5:68566196-68566215 MsG0580027793.01.T01:intron 35.0%
ATACTACGAATCTGATTACC+CGG - Chr5:68566110-68566129 MsG0580027793.01.T01:intron 35.0%
ATGAACAACATCTCATCAAC+TGG + Chr5:68565753-68565772 None:intergenic 35.0%
ATGAATGTGTAAGTGACATG+TGG + Chr5:68562856-68562875 None:intergenic 35.0%
CAATCTATATTCAAGCTGCA+TGG - Chr5:68566046-68566065 MsG0580027793.01.T01:intron 35.0%
CAGAGCTAACTTACATAGTT+AGG - Chr5:68565718-68565737 MsG0580027793.01.T01:intron 35.0%
CCAATTGCATCAATAACACA+GGG + Chr5:68565268-68565287 None:intergenic 35.0%
CCCAGTTCAACAAATATTGA+AGG + Chr5:68561436-68561455 None:intergenic 35.0%
CCCCATAATAGCTATTACTA+TGG + Chr5:68565145-68565164 None:intergenic 35.0%
CCTCAAAGTTCGTCAAAATT+TGG - Chr5:68566168-68566187 MsG0580027793.01.T01:intron 35.0%
CTAACTTACATAGTTAGGGA+AGG - Chr5:68565723-68565742 MsG0580027793.01.T01:intron 35.0%
GAAAAGACTAAAATACCCCT+GGG - Chr5:68562209-68562228 MsG0580027793.01.T01:intron 35.0%
GTGACTGAATTGATGGAAAT+TGG - Chr5:68561494-68561513 MsG0580027793.01.T01:CDS 35.0%
GTTCAAGTAAGCATATACCA+GGG - Chr5:68564503-68564522 MsG0580027793.01.T01:intron 35.0%
TACCATCATCAACAAGAACT+TGG - Chr5:68565912-68565931 MsG0580027793.01.T01:intron 35.0%
TAGACACATACATAGTAGAC+AGG - Chr5:68565975-68565994 MsG0580027793.01.T01:intron 35.0%
TCCAATTGCATCAATAACAC+AGG + Chr5:68565269-68565288 None:intergenic 35.0%
TCCATTGTTGCGAATAGAAA+CGG + Chr5:68566014-68566033 None:intergenic 35.0%
TGAAAAATGGGTCTAAACGA+TGG + Chr5:68563416-68563435 None:intergenic 35.0%
TTGTGTGTGTATTGTGATTC+TGG - Chr5:68561533-68561552 MsG0580027793.01.T01:CDS 35.0%
! AGTCCAAGTGGTAATAGTTT+TGG + Chr5:68563790-68563809 None:intergenic 35.0%
! ATCATGTTCTTGAGCTTTTC+TGG - Chr5:68561592-68561611 MsG0580027793.01.T01:intron 35.0%
! ATTCTACTAGTTTAGAGACC+CGG + Chr5:68564024-68564043 None:intergenic 35.0%
! CGATGGAATTTTGGATTTTG+AGG + Chr5:68563399-68563418 None:intergenic 35.0%
! GAAAGCATGTAAAGAAGTTG+AGG - Chr5:68564450-68564469 MsG0580027793.01.T01:intron 35.0%
! GTATTGTGATTCTGGAAAAG+TGG - Chr5:68561541-68561560 MsG0580027793.01.T01:intron 35.0%
! GTCCAAGTGGTAATAGTTTT+GGG + Chr5:68563789-68563808 None:intergenic 35.0%
! GTTCTTGATTTGAAACCCTA+GGG - Chr5:68561268-68561287 MsG0580027793.01.T01:CDS 35.0%
! TCATGTTCTTGAGCTTTTCT+GGG - Chr5:68561593-68561612 MsG0580027793.01.T01:intron 35.0%
! TCTGGTCTTCATATCAAAGT+CGG - Chr5:68564884-68564903 MsG0580027793.01.T01:intron 35.0%
! TGAGCTTTTCTGGGTTTTTT+GGG - Chr5:68561602-68561621 MsG0580027793.01.T01:intron 35.0%
! TGAGTTGGCAGAAAATGAAT+GGG - Chr5:68561670-68561689 MsG0580027793.01.T01:CDS 35.0%
! TGATTCTGGAAAAGTGGTTA+GGG - Chr5:68561547-68561566 MsG0580027793.01.T01:intron 35.0%
! TTGAAGGAAGGTGATTTTTG+TGG - Chr5:68565842-68565861 MsG0580027793.01.T01:intron 35.0%
! TTGAGCTTTTCTGGGTTTTT+TGG - Chr5:68561601-68561620 MsG0580027793.01.T01:intron 35.0%
! TTTAAAAATTTTACGGGGCG+CGG - Chr5:68563719-68563738 MsG0580027793.01.T01:intron 35.0%
! TTTTCACATTAGCCATGTAG+AGG - Chr5:68564840-68564859 MsG0580027793.01.T01:intron 35.0%
! TTTTGTTACTGTCTATGGTG+GGG - Chr5:68564667-68564686 MsG0580027793.01.T01:intron 35.0%
!! ACTTTAAAGTAACCTCTCTC+TGG - Chr5:68562012-68562031 MsG0580027793.01.T01:CDS 35.0%
!! CCAAATTTTGACGAACTTTG+AGG + Chr5:68566171-68566190 None:intergenic 35.0%
!! TTGAGTTGGCAGAAAATGAA+TGG - Chr5:68561669-68561688 MsG0580027793.01.T01:CDS 35.0%
!! TTTTAGTCGTTTTAGCCCTA+GGG + Chr5:68562067-68562086 None:intergenic 35.0%
!! TTTTTAGTCGTTTTAGCCCT+AGG + Chr5:68562068-68562087 None:intergenic 35.0%
!!! AGTTTTGGGTCCTTTAAACA+TGG + Chr5:68563775-68563794 None:intergenic 35.0%
AAATGACCAAAATGCCCCTA+GGG - Chr5:68562049-68562068 MsG0580027793.01.T01:CDS 40.0%
AATGACTAAAATGCCCCTAG+GGG - Chr5:68564123-68564142 MsG0580027793.01.T01:intron 40.0%
ACACATCACAGTCAAAGTCA+AGG + Chr5:68561700-68561719 None:intergenic 40.0%
ACATCACAGTCAAAGTCAAG+GGG + Chr5:68561698-68561717 None:intergenic 40.0%
ACCAATAAGGAAAACACACG+TGG - Chr5:68561750-68561769 MsG0580027793.01.T01:CDS 40.0%
ACCAATGAGAATTTGACACG+TGG - Chr5:68561794-68561813 MsG0580027793.01.T01:intron 40.0%
ACGAACCAATGGCTTAAATG+AGG - Chr5:68561988-68562007 MsG0580027793.01.T01:CDS 40.0%
AGGGGTCGATGAAGAAAATT+TGG - Chr5:68565438-68565457 MsG0580027793.01.T01:intron 40.0%
ATATACCAGGGTATGACAGT+TGG - Chr5:68564515-68564534 MsG0580027793.01.T01:intron 40.0%
ATGAAAGAGCGAAGAAAGGA+TGG - Chr5:68561125-68561144 MsG0580027793.01.T01:CDS 40.0%
ATGAATGTGGAAGTGACATG+TGG + Chr5:68562322-68562341 None:intergenic 40.0%
ATGCTTGAATTGCGAGAGAA+TGG - Chr5:68561372-68561391 MsG0580027793.01.T01:CDS 40.0%
ATGGAAAACAAAACCTCTCC+AGG + Chr5:68565126-68565145 None:intergenic 40.0%
ATTCGCAACAATGGAGAACA+TGG - Chr5:68566019-68566038 MsG0580027793.01.T01:intron 40.0%
ATTTCGTTGTGATTCTGTGC+TGG - Chr5:68561297-68561316 MsG0580027793.01.T01:CDS 40.0%
CACATCACAGTCAAAGTCAA+GGG + Chr5:68561699-68561718 None:intergenic 40.0%
CGAAAAGACTAAAATACCCC+TGG - Chr5:68562208-68562227 MsG0580027793.01.T01:intron 40.0%
GAAATGACTAAAATGCCCCT+AGG - Chr5:68564121-68564140 MsG0580027793.01.T01:intron 40.0%
GAAATTGGCGTGAATTTGAG+AGG - Chr5:68561509-68561528 MsG0580027793.01.T01:CDS 40.0%
GAAGACCAGACACATGATAT+GGG + Chr5:68564874-68564893 None:intergenic 40.0%
GACCCAAAACTATTACCACT+TGG - Chr5:68563784-68563803 MsG0580027793.01.T01:intron 40.0%
GACCTACCTTCAATCAATGT+CGG - Chr5:68565291-68565310 MsG0580027793.01.T01:intron 40.0%
GAGATGTTGTTCATCATTCG+TGG - Chr5:68565759-68565778 MsG0580027793.01.T01:intron 40.0%
GCACAAGTGTCAGCTATAAA+AGG + Chr5:68561723-68561742 None:intergenic 40.0%
TACGATGAAAGAGCGAAGAA+AGG - Chr5:68561121-68561140 MsG0580027793.01.T01:CDS 40.0%
TACTACGAATCTGATTACCC+GGG - Chr5:68566111-68566130 MsG0580027793.01.T01:intron 40.0%
TCCGTTTCTATTCGCAACAA+TGG - Chr5:68566010-68566029 MsG0580027793.01.T01:intron 40.0%
TCTATATTCAAGCTGCATGG+AGG - Chr5:68566049-68566068 MsG0580027793.01.T01:intron 40.0%
TCTTCTGATTGGAAACATGC+AGG - Chr5:68565179-68565198 MsG0580027793.01.T01:intron 40.0%
TGAAAGAGCGAAGAAAGGAT+GGG - Chr5:68561126-68561145 MsG0580027793.01.T01:CDS 40.0%
TGAAGACCAGACACATGATA+TGG + Chr5:68564875-68564894 None:intergenic 40.0%
TGCAATGAGCAATCTCAGAA+AGG + Chr5:68565557-68565576 None:intergenic 40.0%
TGGAAAACAAAACCTCTCCA+GGG + Chr5:68565125-68565144 None:intergenic 40.0%
TGGAGGAAATGAGGATCAAA+AGG - Chr5:68565320-68565339 MsG0580027793.01.T01:intron 40.0%
TGGTGAAGAGTTGCTAACAT+GGG - Chr5:68565862-68565881 MsG0580027793.01.T01:intron 40.0%
TGTCTCTGAGTCCTTCAAAT+TGG + Chr5:68562157-68562176 None:intergenic 40.0%
TTCGCAACAATGGAGAACAT+GGG - Chr5:68566020-68566039 MsG0580027793.01.T01:intron 40.0%
TTGTGCAATCTGGACCAATA+AGG - Chr5:68561737-68561756 MsG0580027793.01.T01:CDS 40.0%
TTTAGTCAGTTTAGCCCCTA+GGG + Chr5:68564140-68564159 None:intergenic 40.0%
! AACCGACATTGATTGAAGGT+AGG + Chr5:68565296-68565315 None:intergenic 40.0%
! AATTTTCTTCATCGACCCCT+CGG + Chr5:68565438-68565457 None:intergenic 40.0%
! ACAACGAAATCTGAAACCCT+AGG + Chr5:68561287-68561306 None:intergenic 40.0%
! AGCCAAGTTCTTGTTGATGA+TGG + Chr5:68565917-68565936 None:intergenic 40.0%
! AGTGTTACTACTACAGATGG+TGG - Chr5:68565791-68565810 MsG0580027793.01.T01:intron 40.0%
! CAACGAAATCTGAAACCCTA+GGG + Chr5:68561286-68561305 None:intergenic 40.0%
! CCCTGTGTTATTGATGCAAT+TGG - Chr5:68565265-68565284 MsG0580027793.01.T01:intron 40.0%
! GGGTCTAAACGATGGAATTT+TGG + Chr5:68563408-68563427 None:intergenic 40.0%
! GGTTCGATGATGATGATTCT+TGG - Chr5:68561393-68561412 MsG0580027793.01.T01:CDS 40.0%
! GGTTCTTGATTTGAAACCCT+AGG - Chr5:68561267-68561286 MsG0580027793.01.T01:CDS 40.0%
! GTGATTCTGGAAAAGTGGTT+AGG - Chr5:68561546-68561565 MsG0580027793.01.T01:intron 40.0%
! TCCACGTGTGTTTTCCTTAT+TGG + Chr5:68561754-68561773 None:intergenic 40.0%
! TTAAAAATTTTACGGGGCGC+GGG - Chr5:68563720-68563739 MsG0580027793.01.T01:intron 40.0%
! TTTTAGTCAGTTTAGCCCCT+AGG + Chr5:68564141-68564160 None:intergenic 40.0%
!! AACGGACTAAAACGAACCAA+TGG - Chr5:68561977-68561996 MsG0580027793.01.T01:CDS 40.0%
!! CTGATTTTCTGGGGATGTTT+CGG + Chr5:68563322-68563341 None:intergenic 40.0%
!! CTTCAACAGAGGAGTTTTGA+AGG - Chr5:68565826-68565845 MsG0580027793.01.T01:intron 40.0%
!! GAATTTTGGATTTTGAGGGG+CGG + Chr5:68563394-68563413 None:intergenic 40.0%
!! GAGAGTGTTACTACTACAGA+TGG - Chr5:68565788-68565807 MsG0580027793.01.T01:intron 40.0%
!! TCATTGAGAGCACTGAAATC+AGG + Chr5:68566300-68566319 None:intergenic 40.0%
!! TTTAGTCGTTTTAGCCCTAG+GGG + Chr5:68562066-68562085 None:intergenic 40.0%
!!! AACAGAGGAGTTTTGAAGGA+AGG - Chr5:68565830-68565849 MsG0580027793.01.T01:intron 40.0%
AAACAAAACCTCTCCAGGGT+AGG + Chr5:68565121-68565140 None:intergenic 45.0%
AACGTCTGACTCTTTCCCTT+AGG + Chr5:68565390-68565409 None:intergenic 45.0%
AGAAGTGGCTTCTTCAACAG+AGG - Chr5:68565815-68565834 MsG0580027793.01.T01:intron 45.0%
AGAGTTGCTAACATGGGCAT+TGG - Chr5:68565868-68565887 MsG0580027793.01.T01:intron 45.0%
AGATCGAGGAAGAGAAGAAG+AGG + Chr5:68561333-68561352 None:intergenic 45.0%
AGTACCAAGTTCAAGAGAGC+TGG - Chr5:68566251-68566270 MsG0580027793.01.T01:intron 45.0%
ATGTGCCCATATCATGTGTC+TGG - Chr5:68564866-68564885 MsG0580027793.01.T01:intron 45.0%
CCATAGAAGGGACTTCTTAC+GGG - Chr5:68563365-68563384 MsG0580027793.01.T01:intron 45.0%
CCCATAGAAGGGACTTCTTA+CGG - Chr5:68563364-68563383 MsG0580027793.01.T01:intron 45.0%
CCGTAAGAAGTCCCTTCTAT+GGG + Chr5:68563367-68563386 None:intergenic 45.0%
CTTCTAACTAGTACCTACCC+TGG - Chr5:68565105-68565124 MsG0580027793.01.T01:intron 45.0%
CTTGCAGAATCATCACTACC+CGG + Chr5:68566132-68566151 None:intergenic 45.0%
GAAAGAGAGGACGAACTCTT+CGG - Chr5:68561171-68561190 MsG0580027793.01.T01:CDS 45.0%
GAAATGACCAAAATGCCCCT+AGG - Chr5:68562048-68562067 MsG0580027793.01.T01:CDS 45.0%
GACGTTACGACCAATACAAG+TGG - Chr5:68565404-68565423 MsG0580027793.01.T01:intron 45.0%
GCCACGTGTCAAATTCTCAT+TGG + Chr5:68561798-68561817 None:intergenic 45.0%
GGACATAGACTGCAACTAAC+TGG - Chr5:68561771-68561790 MsG0580027793.01.T01:intron 45.0%
GGGTAGTGATGATTCTGCAA+GGG - Chr5:68566131-68566150 MsG0580027793.01.T01:intron 45.0%
GGGTGTTCAACCACTTGTAT+TGG + Chr5:68565417-68565436 None:intergenic 45.0%
GGTATAACAACGACACATGC+TGG - Chr5:68564425-68564444 MsG0580027793.01.T01:intron 45.0%
GGTGGGGACTTCAGAATTTA+AGG - Chr5:68564683-68564702 MsG0580027793.01.T01:intron 45.0%
GGTTCCTCTCTTTGCTAACA+TGG - Chr5:68565644-68565663 MsG0580027793.01.T01:intron 45.0%
GTGCCTTTACGTTGATGCTT+CGG - Chr5:68561246-68561265 MsG0580027793.01.T01:CDS 45.0%
GTGCTCTTTGCTCTTCTGAT+TGG - Chr5:68565168-68565187 MsG0580027793.01.T01:intron 45.0%
GTGGTGAAGAGTTGCTAACA+TGG - Chr5:68565861-68565880 MsG0580027793.01.T01:intron 45.0%
TAGCTGACACTTGTGCAATC+TGG - Chr5:68561727-68561746 MsG0580027793.01.T01:CDS 45.0%
TCGTCCATGTTAGCAAAGAG+AGG + Chr5:68565651-68565670 None:intergenic 45.0%
TTAGTCAGTTTAGCCCCTAG+GGG + Chr5:68564139-68564158 None:intergenic 45.0%
TTCACCAGCTCTCTTGAACT+TGG + Chr5:68566258-68566277 None:intergenic 45.0%
TTGCAGAATCATCACTACCC+GGG + Chr5:68566131-68566150 None:intergenic 45.0%
TTGGTACCTGAACGAAAGAG+AGG - Chr5:68561158-68561177 MsG0580027793.01.T01:CDS 45.0%
TTTCTCCAACTGTCATACCC+TGG + Chr5:68564523-68564542 None:intergenic 45.0%
TTTGAGTCAGTTTAGCCCCA+GGG + Chr5:68562228-68562247 None:intergenic 45.0%
! AGCACTGAAATCAGGTTCTG+AGG + Chr5:68566292-68566311 None:intergenic 45.0%
! ATTTTCTTCATCGACCCCTC+GGG + Chr5:68565437-68565456 None:intergenic 45.0%
! GAACCGAAGCATCAACGTAA+AGG + Chr5:68561252-68561271 None:intergenic 45.0%
! GACGAACCGACATTGATTGA+AGG + Chr5:68565300-68565319 None:intergenic 45.0%
! GCACTGAAATCAGGTTCTGA+GGG + Chr5:68566291-68566310 None:intergenic 45.0%
! TTTGACGAACTTTGAGGACC+CGG + Chr5:68566165-68566184 None:intergenic 45.0%
!! AAATCAGGTTCTGAGGGCTT+TGG + Chr5:68566285-68566304 None:intergenic 45.0%
!! AATCAGGTTCTGAGGGCTTT+GGG + Chr5:68566284-68566303 None:intergenic 45.0%
!! ACTACAGATGGTGGAAGAAG+TGG - Chr5:68565800-68565819 MsG0580027793.01.T01:intron 45.0%
!! CTGCATGGAGGAAGCATTTA+AGG - Chr5:68566061-68566080 MsG0580027793.01.T01:intron 45.0%
!! GAACTTGGCTTTAGAAGCAG+AGG - Chr5:68565927-68565946 MsG0580027793.01.T01:intron 45.0%
!! GGTAAGCTTGCTGCAGATTT+CGG + Chr5:68565896-68565915 None:intergenic 45.0%
!! TCAATCAATGTCGGTTCGTC+TGG - Chr5:68565300-68565319 MsG0580027793.01.T01:intron 45.0%
!! TTTTGAGTCAGTTTAGCCCC+AGG + Chr5:68562229-68562248 None:intergenic 45.0%
!!! TTTTAGCCCTAGGGGCATTT+TGG + Chr5:68562058-68562077 None:intergenic 45.0%
!! AAATTAATAAAAATGAAAAA+TGG + Chr5:68563429-68563448 None:intergenic 5.0%
!! AATTAATAAAAATGAAAAAT+GGG + Chr5:68563428-68563447 None:intergenic 5.0%
!!! AGATAAAATTTTTTTTAAAA+TGG - Chr5:68562094-68562113 MsG0580027793.01.T01:CDS 5.0%
!!! ATATTTTATTTAACAAAAAT+CGG - Chr5:68563269-68563288 MsG0580027793.01.T01:intron 5.0%
!!! ATTTTTGTTAAATAAAATAT+TGG + Chr5:68563269-68563288 None:intergenic 5.0%
AACTAGTACCTACCCTGGAG+AGG - Chr5:68565110-68565129 MsG0580027793.01.T01:intron 50.0%
ACAAGTGGTTGAACACCCGA+GGG - Chr5:68565419-68565438 MsG0580027793.01.T01:intron 50.0%
AGGACCATGACTCCCATAGA+AGG - Chr5:68563352-68563371 MsG0580027793.01.T01:intron 50.0%
AGTCCCTTCTATGGGAGTCA+TGG + Chr5:68563359-68563378 None:intergenic 50.0%
CCCGTAAGAAGTCCCTTCTA+TGG + Chr5:68563368-68563387 None:intergenic 50.0%
CGGGTAGTGATGATTCTGCA+AGG - Chr5:68566130-68566149 MsG0580027793.01.T01:intron 50.0%
CTGACTCTTTCCCTTAGGTC+CGG + Chr5:68565385-68565404 None:intergenic 50.0%
CTTGCTTCATCCGGACCTAA+GGG - Chr5:68565372-68565391 MsG0580027793.01.T01:intron 50.0%
GAGAATTTGACACGTGGCAC+TGG - Chr5:68561800-68561819 MsG0580027793.01.T01:intron 50.0%
GCATCATCGCTTGCTTCATC+CGG - Chr5:68565363-68565382 MsG0580027793.01.T01:intron 50.0%
GGACCATGACTCCCATAGAA+GGG - Chr5:68563353-68563372 MsG0580027793.01.T01:intron 50.0%
GTTCGTCCTCTCTTTCGTTC+AGG + Chr5:68561167-68561186 None:intergenic 50.0%
TACAAGTGGTTGAACACCCG+AGG - Chr5:68565418-68565437 MsG0580027793.01.T01:intron 50.0%
TTGAGTCAGTTTAGCCCCAG+GGG + Chr5:68562227-68562246 None:intergenic 50.0%
! AGCATTTAAGGCGAAGGCGA+AGG - Chr5:68566073-68566092 MsG0580027793.01.T01:intron 50.0%
! TGATGATTCTGCAAGGGCGT+TGG - Chr5:68566137-68566156 MsG0580027793.01.T01:intron 50.0%
! TTTAAGGCGAAGGCGAAGGA+AGG - Chr5:68566077-68566096 MsG0580027793.01.T01:intron 50.0%
!! ATCAATGTCGGTTCGTCTGG+AGG - Chr5:68565303-68565322 MsG0580027793.01.T01:intron 50.0%
!! CGGTTTGCTGCTAATCTTCG+TGG - Chr5:68566216-68566235 MsG0580027793.01.T01:intron 50.0%
!! GGAGGAAGCATTTAAGGCGA+AGG - Chr5:68566067-68566086 MsG0580027793.01.T01:intron 50.0%
!! GGGTTTTCGGGCTACTTGAT+CGG - Chr5:68563290-68563309 MsG0580027793.01.T01:intron 50.0%
AGAGAGGACGAACTCTTCGG+AGG - Chr5:68561174-68561193 MsG0580027793.01.T01:CDS 55.0%
ATATCTAACCCGGGCAACGC+CGG - Chr5:68564002-68564021 MsG0580027793.01.T01:intron 55.0%
CAAGTGGTTGAACACCCGAG+GGG - Chr5:68565420-68565439 MsG0580027793.01.T01:intron 55.0%
CGATCACGAGAGAGAGATCG+AGG + Chr5:68561347-68561366 None:intergenic 55.0%
CGCGAAATTTCGCCAGAGAG+AGG + Chr5:68562027-68562046 None:intergenic 55.0%
CGGTTCGTCTGGAGGAAATG+AGG - Chr5:68565311-68565330 MsG0580027793.01.T01:intron 55.0%
GCGATGATGCATCCACTGCT+CGG + Chr5:68565353-68565372 None:intergenic 55.0%
GCTTGCTTCATCCGGACCTA+AGG - Chr5:68565371-68565390 MsG0580027793.01.T01:intron 55.0%
TGGGCACATGCACCTCTACA+TGG + Chr5:68564855-68564874 None:intergenic 55.0%
!! TTCTGCAAGGGCGTTGGTTC+CGG - Chr5:68566143-68566162 MsG0580027793.01.T01:intron 55.0%
AAGGCGAAGGCGAAGGAAGG+AGG - Chr5:68566080-68566099 MsG0580027793.01.T01:intron 60.0%
GCGGGAGAAGGCAATAGGGT+GGG - Chr5:68563738-68563757 MsG0580027793.01.T01:intron 60.0%
TATCTAACCCGGGCAACGCC+GGG - Chr5:68564003-68564022 MsG0580027793.01.T01:intron 60.0%
TTTAGAGACCCGGCGTTGCC+CGG + Chr5:68564014-68564033 None:intergenic 60.0%
! AAAGGCGTGACTCCGAGCAG+TGG - Chr5:68565338-68565357 MsG0580027793.01.T01:intron 60.0%
! ATTTTACGGGGCGCGGGAGA+AGG - Chr5:68563726-68563745 MsG0580027793.01.T01:intron 60.0%
!! TCTGCAAGGGCGTTGGTTCC+GGG - Chr5:68566144-68566163 MsG0580027793.01.T01:intron 60.0%
CGCGGGAGAAGGCAATAGGG+TGG - Chr5:68563737-68563756 MsG0580027793.01.T01:intron 65.0%
GGGCGCGGGAGAAGGCAATA+GGG - Chr5:68563734-68563753 MsG0580027793.01.T01:intron 65.0%
TTAGAGACCCGGCGTTGCCC+GGG + Chr5:68564013-68564032 None:intergenic 65.0%
GGGGCGCGGGAGAAGGCAAT+AGG - Chr5:68563733-68563752 MsG0580027793.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 68561094 68566329 68561094 ID=MsG0580027793.01;Name=MsG0580027793.01
Chr5 mRNA 68561094 68566329 68561094 ID=MsG0580027793.01.T01;Parent=MsG0580027793.01;Name=MsG0580027793.01.T01;_AED=0.50;_eAED=0.53;_QI=0|0.4|0.16|1|0.8|0.66|6|0|428
Chr5 exon 68566263 68566329 68566263 ID=MsG0580027793.01.T01:exon:23061;Parent=MsG0580027793.01.T01
Chr5 exon 68562719 68563010 68562719 ID=MsG0580027793.01.T01:exon:23060;Parent=MsG0580027793.01.T01
Chr5 exon 68562223 68562334 68562223 ID=MsG0580027793.01.T01:exon:23059;Parent=MsG0580027793.01.T01
Chr5 exon 68561895 68562131 68561895 ID=MsG0580027793.01.T01:exon:23058;Parent=MsG0580027793.01.T01
Chr5 exon 68561660 68561778 68561660 ID=MsG0580027793.01.T01:exon:23057;Parent=MsG0580027793.01.T01
Chr5 exon 68561094 68561553 68561094 ID=MsG0580027793.01.T01:exon:23056;Parent=MsG0580027793.01.T01
Chr5 CDS 68566263 68566329 68566263 ID=MsG0580027793.01.T01:cds;Parent=MsG0580027793.01.T01
Chr5 CDS 68562719 68563010 68562719 ID=MsG0580027793.01.T01:cds;Parent=MsG0580027793.01.T01
Chr5 CDS 68562223 68562334 68562223 ID=MsG0580027793.01.T01:cds;Parent=MsG0580027793.01.T01
Chr5 CDS 68561895 68562131 68561895 ID=MsG0580027793.01.T01:cds;Parent=MsG0580027793.01.T01
Chr5 CDS 68561660 68561778 68561660 ID=MsG0580027793.01.T01:cds;Parent=MsG0580027793.01.T01
Chr5 CDS 68561094 68561553 68561094 ID=MsG0580027793.01.T01:cds;Parent=MsG0580027793.01.T01
Gene Sequence

>MsG0580027793.01.T01

ATGTATATGAAACAAGCTACTATGATTTACGATGAAAGAGCGAAGAAAGGATGGGAAGAAAGATTTGGTCCAAAATTAGGGTATAACAACGACACATGCTGGAAGAAAGCATGTAAAGAAGTTGAGGGATGTAATTCACATTTCTTGTATTGTGGAAGTTCAAGTAAGCATATACCAGGGTATGACAGTTGGAGAAATGTCAGTCAATCTGTGCTCAAAAGTAAATGCTTTGTTGAAGATGATAACTCAGCTTTTAACTATGGAATCTTTTCTCAAGCTATAGAATCTCATATTGTTGCTTCCATAGAAGTTTTCCCCAAATTTTGTTACTGTCTATGGTGGGGACTTCAGAATTTAAGTACACTTGGTCAGGGGCTTCTAACTAGTACCTACCCTGGAGAGGTTTTGTTTTCCATAGTAATAGCTATTATGGGGCTTGTGCTCTTTGCTCTTCTGATTGGAAACATGCAGACCTACCTTCAATCAATGTCGGTTCGTCTGGAGGAAATGAGGATCAAAAGGCGTGACTCCGAGCAGTGGATGCATCATCGCTTGCTTCATCCGGACCTAAGGGAAAGAGTCAGACGTTACGACCAATACAAGTGGTTGAACACCCGAGGGGTCGATGAAGAAAATTTGGTTCAGAGTCTTCCAAAAGATCTTAGAAGAGATATCAAACGTCATCTTTGTTTGAATTTAGTCAGAAGGGTTCCTCTCTTTGCTAACATGGACGAACGCTTGCTTGACGCGATATGTGAGCGATTGAAACCGAGTTTATATACAGAGCTAACTTACATAGTTAGGGAAGGTGATCCAGTTGATGAGATAGTTGCTAACATGGGCATTGGATCCGAAATCTGCAGCAAGCTTACCATCATCAACAAGAACTTGGCTTTAGAAGCAGAGGAATTGAAGTTTGTTGCATCACAGTTTAGACACATACATAGTAGACAGGTTCAGCATACATTCCGTTTCTATTCGCAACAATGGAGAACATGGGCTGCAATCTATATTCAAGCTGCATGGAGGAAGCATTTAAGGCGAAGGCGAAGGAAGGAGGAAGAAGAATACTACGAATCTGATTACCCGGGTAGTGATGATTCTGCAAGGGCGTTGGTTCCGGGTCCTCAAAGTTCGTCAAAATTTGGACTTAATACAACAGTCTATGCTTCTCGGTTTGCTGCTAATCTTCGTGGTCATAGACTTCGAGTACCAAGTTCAAGAGAGCTGGTGAATATCCCAAAGCCCTCAGAACCTGATTTCAGTGCTCTCAATGATGAAGAGTGA
Protein sequence

>MsG0580027793.01.T01

MYMKQATMIYDERAKKGWEERFGPKLGYNNDTCWKKACKEVEGCNSHFLYCGSSSKHIPGYDSWRNVSQSVLKSKCFVEDDNSAFNYGIFSQAIESHIVASIEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVLFSIVIAIMGLVLFALLIGNMQTYLQSMSVRLEEMRIKRRDSEQWMHHRLLHPDLRERVRRYDQYKWLNTRGVDEENLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTELTYIVREGDPVDEIVANMGIGSEICSKLTIINKNLALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRKHLRRRRRKEEEEYYESDYPGSDDSARALVPGPQSSSKFGLNTTVYASRFAANLRGHRLRVPSSRELVNIPKPSEPDFSALNDEE*