AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027894.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027894.01.T01 MTR_5g064950 75.617 324 40 4 1 309 1 300 8.12e-174 483
MsG0580027894.01.T01 MTR_5g064950 75.685 292 33 3 1 277 1 269 2.50e-157 442
MsG0580027894.01.T01 MTR_3g099620 54.079 331 113 10 1 306 1 317 2.76e-102 303
MsG0580027894.01.T01 MTR_7g113830 45.283 318 142 11 1 306 14 311 5.60e-77 238
MsG0580027894.01.T01 MTR_8g066770 53.521 213 92 4 98 309 104 310 1.89e-68 216
MsG0580027894.01.T01 MTR_1g082480 42.988 328 155 9 1 304 14 333 4.11e-67 213
MsG0580027894.01.T01 MTR_1g082480 42.525 301 142 8 1 277 14 307 1.33e-58 191
MsG0580027894.01.T01 MTR_8g024210 44.762 210 93 3 97 301 170 361 1.48e-47 163
MsG0580027894.01.T01 MTR_0194s0050 41.475 217 115 5 90 298 166 378 7.96e-45 157
MsG0580027894.01.T01 MTR_2g022280 39.205 176 103 2 108 283 1 172 6.84e-35 125
MsG0580027894.01.T01 MTR_3g090850 32.800 250 122 7 78 283 68 315 4.41e-31 119
MsG0580027894.01.T01 MTR_1g028470 31.128 257 154 4 46 283 27 279 5.23e-29 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027894.01.T01 AT1G72210 48.358 335 123 11 1 304 1 316 4.85e-87 264
MsG0580027894.01.T01 AT1G72210 46.429 308 116 10 1 277 1 290 7.74e-74 229
MsG0580027894.01.T01 AT1G22490 45.912 318 143 10 1 304 1 303 1.43e-72 226
MsG0580027894.01.T01 AT1G22490 44.027 293 132 8 1 277 1 277 2.43e-59 193
MsG0580027894.01.T01 AT5G46690 44.958 238 87 8 98 304 78 302 1.84e-44 154
MsG0580027894.01.T01 AT5G65320 40.580 207 108 2 104 304 98 295 1.37e-43 151
MsG0580027894.01.T01 AT4G01460 39.906 213 111 3 98 304 105 306 1.97e-43 151
MsG0580027894.01.T01 AT4G01460 39.906 213 111 3 98 304 105 306 1.97e-43 151
MsG0580027894.01.T01 AT2G46810 40.196 204 100 6 99 298 112 297 1.58e-40 143
MsG0580027894.01.T01 AT2G46810 40.196 204 100 6 99 298 172 357 4.27e-40 144
MsG0580027894.01.T01 AT3G24140 39.545 220 121 4 88 298 177 393 5.17e-40 144
MsG0580027894.01.T01 AT2G46810 40.196 204 100 6 99 298 184 369 5.52e-40 144
MsG0580027894.01.T01 AT3G24140 39.545 220 121 4 88 298 177 393 6.51e-40 144
MsG0580027894.01.T01 AT3G61950 38.278 209 100 6 97 298 116 302 3.28e-39 140
MsG0580027894.01.T01 AT3G61950 38.278 209 100 6 97 298 167 353 1.46e-38 140
MsG0580027894.01.T01 AT3G61950 39.655 174 78 4 97 264 116 268 3.15e-37 134
MsG0580027894.01.T01 AT5G65320 40.642 187 96 2 104 284 98 275 1.09e-36 132
MsG0580027894.01.T01 AT3G61950 39.655 174 78 4 97 264 167 319 2.03e-36 134
MsG0580027894.01.T01 AT5G46690 44.076 211 75 7 98 277 78 276 2.69e-36 132
MsG0580027894.01.T01 AT2G46810 42.604 169 77 4 99 264 112 263 3.08e-36 133
MsG0580027894.01.T01 AT3G06120 35.263 190 98 5 108 283 1 179 2.21e-29 111
MsG0580027894.01.T01 AT5G53210 58.730 63 26 0 106 168 100 162 2.58e-19 87.4
MsG0580027894.01.T01 AT5G53210 58.730 63 26 0 106 168 100 162 2.75e-19 87.4
MsG0580027894.01.T01 AT3G61950 65.116 43 15 0 97 139 167 209 7.64e-13 67.0
MsG0580027894.01.T01 AT3G61950 65.116 43 15 0 97 139 167 209 7.64e-13 67.0

Find 63 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATAATCTCCTTTCAAAT+TGG 0.176896 5:-70545121 MsG0580027894.01.T01:CDS
TGCCTCCTTCTTATGCAAAA+AGG 0.226402 5:-70544893 MsG0580027894.01.T01:CDS
GTGGGAAGAGTGGTAGTTTC+TGG 0.232175 5:+70545089 None:intergenic
CATGTTTCCTCAATACTCTA+TGG 0.258942 5:-70544399 MsG0580027894.01.T01:CDS
CATCCACACTTGAAACATTA+AGG 0.263811 5:+70544198 None:intergenic
TCATAATCTCCTTTCAAATT+GGG 0.357599 5:-70545120 MsG0580027894.01.T01:CDS
AGGTCAAATAATGGCCTTAG+AGG 0.371011 5:-70545297 None:intergenic
CCATGGCACGTGACTGATTA+TGG 0.383936 5:+70544342 None:intergenic
GTTGTTGGGATTCAAAATCT+TGG 0.395613 5:-70544236 MsG0580027894.01.T01:CDS
TGAGCTATTACGTAGAATTC+AGG 0.401572 5:-70543338 MsG0580027894.01.T01:CDS
ACTTGGAGTGGTTTCAACTA+AGG 0.406246 5:+70545220 None:intergenic
ATGTTTCCTCAATACTCTAT+GGG 0.408818 5:-70544398 MsG0580027894.01.T01:CDS
TGGGAAGAGTGGTAGTTTCT+GGG 0.409146 5:+70545090 None:intergenic
CGGTGCAATTAACTTCTTGA+AGG 0.418841 5:-70544534 MsG0580027894.01.T01:CDS
CCACTCCAAGTGAAGGATCT+TGG 0.429067 5:-70545208 MsG0580027894.01.T01:CDS
CAGGTTATGAAGATGGTTGT+TGG 0.441455 5:-70544251 MsG0580027894.01.T01:CDS
AGGTTATGAAGATGGTTGTT+GGG 0.442208 5:-70544250 MsG0580027894.01.T01:CDS
CCAAGATCCTTCACTTGGAG+TGG 0.454095 5:+70545208 None:intergenic
GTCGTCGTTTGCTCTGACGA+GGG 0.455391 5:+70545033 None:intergenic
CTGTAAATCAATGGATCTTG+TGG 0.471914 5:+70545263 None:intergenic
GGCAGATATAGAAGTGACTT+TGG 0.474900 5:-70544321 MsG0580027894.01.T01:CDS
TGGCTCCAAGATCCTTCACT+TGG 0.493996 5:+70545203 None:intergenic
TGTTGTGGTGGATGCAAAAG+TGG 0.496117 5:+70545064 None:intergenic
CGTGACTGATTATGGTTGGT+AGG 0.498430 5:+70544350 None:intergenic
TTTGCTCTGACGAGGGGCTG+TGG 0.500724 5:+70545040 None:intergenic
AATTAATAATAGGTAGAAGA+AGG 0.501607 5:-70543406 MsG0580027894.01.T01:intron
CTGCAATGTGAGTCATCCTC+TGG 0.511278 5:+70544973 None:intergenic
TGCATAAGAAGGAGGCATCA+AGG 0.514555 5:+70544899 None:intergenic
TCTTTGCAACTGTAAATCAA+TGG 0.515148 5:+70545254 None:intergenic
CCTTGTCTCGGTTAGTGCTA+AGG 0.528899 5:-70544168 MsG0580027894.01.T01:intron
AAGGAGGCATCAAGGATTTG+AGG 0.530586 5:+70544907 None:intergenic
TTGTTTGGCAACCGTAGTTG+TGG 0.536558 5:+70545183 None:intergenic
GGTGATCAAGCATCAATAGT+TGG 0.540135 5:-70544557 MsG0580027894.01.T01:CDS
ATTAATAATAGGTAGAAGAA+GGG 0.541316 5:-70543405 MsG0580027894.01.T01:intron
AAAAGTGGAAGTGGGAAGAG+TGG 0.541468 5:+70545079 None:intergenic
CAACTACTGAACACAGTGGA+TGG 0.542124 5:-70543379 MsG0580027894.01.T01:CDS
AGGGGCTGTGGTTGTTGTGG+TGG 0.542969 5:+70545052 None:intergenic
ACGAGGGGCTGTGGTTGTTG+TGG 0.561823 5:+70545049 None:intergenic
GGTGGATGCAAAAGTGGAAG+TGG 0.562310 5:+70545070 None:intergenic
GGGAAGAGTGGTAGTTTCTG+GGG 0.562790 5:+70545091 None:intergenic
ACACCTTAATGTTTCAAGTG+TGG 0.563886 5:-70544201 MsG0580027894.01.T01:CDS
CGTCGTCGTTTGCTCTGACG+AGG 0.567064 5:+70545032 None:intergenic
CCATAATCAGTCACGTGCCA+TGG 0.568858 5:-70544342 MsG0580027894.01.T01:CDS
ACAAGGACAGGTTATGAAGA+TGG 0.569307 5:-70544258 MsG0580027894.01.T01:CDS
ACATAATCTACAATTCATGA+AGG 0.570662 5:-70544504 MsG0580027894.01.T01:CDS
GGGAAGAATCCCAATTTGAA+AGG 0.583370 5:+70545111 None:intergenic
GTGACTGATTATGGTTGGTA+GGG 0.586160 5:+70544351 None:intergenic
GTTGAAACCACTCCAAGTGA+AGG 0.604132 5:-70545215 MsG0580027894.01.T01:CDS
GGGTAGCACGTGATGTTCTG+AGG 0.605537 5:+70544371 None:intergenic
TCGTCGTTTGCTCTGACGAG+GGG 0.613990 5:+70545034 None:intergenic
CCTTAGCACTAACCGAGACA+AGG 0.614421 5:+70544168 None:intergenic
GGATGATAATGTCCTTGTCT+CGG 0.618077 5:-70544180 MsG0580027894.01.T01:CDS
GGTGCACCCATAGAGTATTG+AGG 0.621516 5:+70544392 None:intergenic
GTGGATGCAAAAGTGGAAGT+GGG 0.621519 5:+70545071 None:intergenic
GGATCTTGGAGCCACAACTA+CGG 0.621648 5:-70545194 MsG0580027894.01.T01:CDS
AGTCACTTCTATATCTGCCA+TGG 0.622403 5:+70544325 None:intergenic
AGGAGGAAATCGAGAGCCAG+AGG 0.636953 5:-70544989 MsG0580027894.01.T01:CDS
GCTATTACGTAGAATTCAGG+TGG 0.646782 5:-70543335 MsG0580027894.01.T01:CDS
CATAATCTACAATTCATGAA+GGG 0.647917 5:-70544503 MsG0580027894.01.T01:CDS
GGCACGTGACTGATTATGGT+TGG 0.656195 5:+70544346 None:intergenic
GATCAAGCATCAATAGTTGG+CGG 0.664504 5:-70544554 MsG0580027894.01.T01:CDS
TCAAGGATTTGAGGACATCG+AGG 0.738437 5:+70544916 None:intergenic
GTGTCAACTACTGAACACAG+TGG 0.768612 5:-70543383 MsG0580027894.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAATCACTATTAAA+CGG - Chr5:70544663-70544682 MsG0580027894.01.T01:intron 10.0%
!! TATATATTGGAATTAATAAT+AGG - Chr5:70545186-70545205 MsG0580027894.01.T01:CDS 10.0%
!!! TGAAAATTTTGATTTTTTTT+TGG + Chr5:70543994-70544013 None:intergenic 10.0%
!! AAGGTTACTAATTTATATAT+TGG - Chr5:70545173-70545192 MsG0580027894.01.T01:CDS 15.0%
!!! CTAATTTATTTTTTTTGACA+AGG - Chr5:70545154-70545173 MsG0580027894.01.T01:CDS 15.0%
!! AAATTCAATACTATACCATT+TGG - Chr5:70544750-70544769 MsG0580027894.01.T01:intron 20.0%
!! AACTTCATAAATATGATATG+TGG - Chr5:70544693-70544712 MsG0580027894.01.T01:intron 20.0%
!! AATCAAGTGATTTAAAGATT+TGG - Chr5:70544540-70544559 MsG0580027894.01.T01:CDS 20.0%
!! AATTAATAATAGGTAGAAGA+AGG - Chr5:70545196-70545215 MsG0580027894.01.T01:CDS 20.0%
!! ATAAAATTCACTATCAACAA+GGG - Chr5:70544513-70544532 MsG0580027894.01.T01:CDS 20.0%
!! ATGTGTTATAAAATTGTTGT+TGG + Chr5:70543939-70543958 None:intergenic 20.0%
!! ATTAATAATAGGTAGAAGAA+GGG - Chr5:70545197-70545216 MsG0580027894.01.T01:CDS 20.0%
!! TATAAAATTCACTATCAACA+AGG - Chr5:70544512-70544531 MsG0580027894.01.T01:CDS 20.0%
!!! ATCTACTTTAAAATCATAGA+TGG + Chr5:70544904-70544923 None:intergenic 20.0%
!!! ATTTTTGTTGAGAAAATTGT+TGG + Chr5:70544649-70544668 None:intergenic 20.0%
!!! CAAAATAGTGAAAAACATTT+TGG - Chr5:70545128-70545147 MsG0580027894.01.T01:CDS 20.0%
!!! TGTGTTATAAAATTGTTGTT+GGG + Chr5:70543938-70543957 None:intergenic 20.0%
! AACATGAAAAACTCAGTAAA+AGG + Chr5:70544189-70544208 None:intergenic 25.0%
! ACATAATCTACAATTCATGA+AGG - Chr5:70544098-70544117 MsG0580027894.01.T01:intron 25.0%
! ATAATGTTGAAAAAACGACA+AGG - Chr5:70544327-70544346 MsG0580027894.01.T01:CDS 25.0%
! ATATGGTTTAAAAATTGACG+TGG + Chr5:70545089-70545108 None:intergenic 25.0%
! ATCATAATCTCCTTTCAAAT+TGG - Chr5:70543481-70543500 MsG0580027894.01.T01:intron 25.0%
! CATAATCTACAATTCATGAA+GGG - Chr5:70544099-70544118 MsG0580027894.01.T01:intron 25.0%
! CTTGTGTAATATTTACCAAA+TGG + Chr5:70544768-70544787 None:intergenic 25.0%
! CTTGTTAAATAAATGATGAG+TGG - Chr5:70544564-70544583 MsG0580027894.01.T01:intron 25.0%
! TCATAATCTCCTTTCAAATT+GGG - Chr5:70543482-70543501 MsG0580027894.01.T01:intron 25.0%
! TGTTTCATAAACACAATTGT+TGG - Chr5:70543789-70543808 MsG0580027894.01.T01:intron 25.0%
!! GTGTTATAAAATTGTTGTTG+GGG + Chr5:70543937-70543956 None:intergenic 25.0%
AGAGAAATATTCGATTGAGA+GGG - Chr5:70544607-70544626 MsG0580027894.01.T01:intron 30.0%
ATGAAAAACTCAGTAAAAGG+TGG + Chr5:70544186-70544205 None:intergenic 30.0%
ATGTTTCCTCAATACTCTAT+GGG - Chr5:70544204-70544223 MsG0580027894.01.T01:CDS 30.0%
TACTTAACAAAGGTGAACTA+GGG - Chr5:70545040-70545059 MsG0580027894.01.T01:CDS 30.0%
TAGAGAAATATTCGATTGAG+AGG - Chr5:70544606-70544625 MsG0580027894.01.T01:intron 30.0%
TCTTTGCAACTGTAAATCAA+TGG + Chr5:70543351-70543370 None:intergenic 30.0%
TGAACCACATGTAGAATTTA+GGG + Chr5:70544018-70544037 None:intergenic 30.0%
TTGAACCACATGTAGAATTT+AGG + Chr5:70544019-70544038 None:intergenic 30.0%
! ATTACCCTTTTTGCATAAGA+AGG + Chr5:70543717-70543736 None:intergenic 30.0%
AAAATTGTTGGAGACATGGT+AGG + Chr5:70544637-70544656 None:intergenic 35.0%
AGGTTATGAAGATGGTTGTT+GGG - Chr5:70544352-70544371 MsG0580027894.01.T01:CDS 35.0%
CACTGTGAATGCAAAAAATG+AGG - Chr5:70543593-70543612 MsG0580027894.01.T01:intron 35.0%
CATCCACACTTGAAACATTA+AGG + Chr5:70544407-70544426 None:intergenic 35.0%
CATGTTTCCTCAATACTCTA+TGG - Chr5:70544203-70544222 MsG0580027894.01.T01:CDS 35.0%
CTACATGTGGTTCAAAAACA+GGG - Chr5:70544024-70544043 MsG0580027894.01.T01:intron 35.0%
CTGTAAATCAATGGATCTTG+TGG + Chr5:70543342-70543361 None:intergenic 35.0%
GAGAAATATTCGATTGAGAG+GGG - Chr5:70544608-70544627 MsG0580027894.01.T01:intron 35.0%
GTACTTAACAAAGGTGAACT+AGG - Chr5:70545039-70545058 MsG0580027894.01.T01:CDS 35.0%
GTTGTTGGGATTCAAAATCT+TGG - Chr5:70544366-70544385 MsG0580027894.01.T01:CDS 35.0%
TCAACCCTAAATTCTACATG+TGG - Chr5:70544011-70544030 MsG0580027894.01.T01:intron 35.0%
TCTACATGTGGTTCAAAAAC+AGG - Chr5:70544023-70544042 MsG0580027894.01.T01:intron 35.0%
TGAGAAAATTGTTGGAGACA+TGG + Chr5:70544641-70544660 None:intergenic 35.0%
TGAGCTATTACGTAGAATTC+AGG - Chr5:70545264-70545283 MsG0580027894.01.T01:CDS 35.0%
TGGAAAAACTATAGCCTCTA+AGG + Chr5:70543322-70543341 None:intergenic 35.0%
TGGTTTAAAAATTGACGTGG+AGG + Chr5:70545086-70545105 None:intergenic 35.0%
TGTGAATGCAAAAAATGAGG+AGG - Chr5:70543596-70543615 MsG0580027894.01.T01:intron 35.0%
! AAAAATTGACGTGGAGGTTT+TGG + Chr5:70545080-70545099 None:intergenic 35.0%
! ACACCTTAATGTTTCAAGTG+TGG - Chr5:70544401-70544420 MsG0580027894.01.T01:CDS 35.0%
! ACTTTGATGCCTTATGGTTT+TGG - Chr5:70543860-70543879 MsG0580027894.01.T01:intron 35.0%
! CTTTGATGCCTTATGGTTTT+GGG - Chr5:70543861-70543880 MsG0580027894.01.T01:intron 35.0%
! GATCTTCTTCGTCTTTTGTT+TGG + Chr5:70543437-70543456 None:intergenic 35.0%
!! ATTTGCTGTTTGCATCATGA+CGG - Chr5:70545012-70545031 MsG0580027894.01.T01:CDS 35.0%
!!! CCTCAATTTTTAGTCGATCT+GGG + Chr5:70543838-70543857 None:intergenic 35.0%
!!! TCCTCAATTTTTAGTCGATC+TGG + Chr5:70543839-70543858 None:intergenic 35.0%
ACAAGGACAGGTTATGAAGA+TGG - Chr5:70544344-70544363 MsG0580027894.01.T01:CDS 40.0%
ACTTGGAGTGGTTTCAACTA+AGG + Chr5:70543385-70543404 None:intergenic 40.0%
AGTCACTTCTATATCTGCCA+TGG + Chr5:70544280-70544299 None:intergenic 40.0%
CAGGTTATGAAGATGGTTGT+TGG - Chr5:70544351-70544370 MsG0580027894.01.T01:CDS 40.0%
CCCAGATCGACTAAAAATTG+AGG - Chr5:70543835-70543854 MsG0580027894.01.T01:intron 40.0%
CGGTGCAATTAACTTCTTGA+AGG - Chr5:70544068-70544087 MsG0580027894.01.T01:intron 40.0%
CGGTTAGTGCTAAGGTAAAT+TGG - Chr5:70544442-70544461 MsG0580027894.01.T01:CDS 40.0%
GAGGAAACTTTGATGCCTTA+TGG - Chr5:70543854-70543873 MsG0580027894.01.T01:intron 40.0%
GATCAAGCATCAATAGTTGG+CGG - Chr5:70544048-70544067 MsG0580027894.01.T01:intron 40.0%
GCCTCCTTCTTATGCAAAAA+GGG - Chr5:70543710-70543729 MsG0580027894.01.T01:intron 40.0%
GCTATTACGTAGAATTCAGG+TGG - Chr5:70545267-70545286 MsG0580027894.01.T01:CDS 40.0%
GGCAGATATAGAAGTGACTT+TGG - Chr5:70544281-70544300 MsG0580027894.01.T01:CDS 40.0%
GGGAAGAATCCCAATTTGAA+AGG + Chr5:70543494-70543513 None:intergenic 40.0%
GGTGATCAAGCATCAATAGT+TGG - Chr5:70544045-70544064 MsG0580027894.01.T01:intron 40.0%
GTTGAAAAAACGACAAGGAC+AGG - Chr5:70544332-70544351 MsG0580027894.01.T01:CDS 40.0%
TGCCTCCTTCTTATGCAAAA+AGG - Chr5:70543709-70543728 MsG0580027894.01.T01:intron 40.0%
! ACCCTTTTTGCATAAGAAGG+AGG + Chr5:70543714-70543733 None:intergenic 40.0%
! GGATGATAATGTCCTTGTCT+CGG - Chr5:70544422-70544441 MsG0580027894.01.T01:CDS 40.0%
! GTGACTGATTATGGTTGGTA+GGG + Chr5:70544254-70544273 None:intergenic 40.0%
AAAAGTGGAAGTGGGAAGAG+TGG + Chr5:70543526-70543545 None:intergenic 45.0%
CAACTACTGAACACAGTGGA+TGG - Chr5:70545223-70545242 MsG0580027894.01.T01:CDS 45.0%
CACTCGTACCCAAAACCATA+AGG + Chr5:70543872-70543891 None:intergenic 45.0%
CGTGACTGATTATGGTTGGT+AGG + Chr5:70544255-70544274 None:intergenic 45.0%
GTGGATGCAAAAGTGGAAGT+GGG + Chr5:70543534-70543553 None:intergenic 45.0%
GTGTCAACTACTGAACACAG+TGG - Chr5:70545219-70545238 MsG0580027894.01.T01:CDS 45.0%
GTTGAAACCACTCCAAGTGA+AGG - Chr5:70543387-70543406 MsG0580027894.01.T01:CDS 45.0%
TCAAGGATTTGAGGACATCG+AGG + Chr5:70543689-70543708 None:intergenic 45.0%
TCCTAGACGTTTAACGCATC+CGG - Chr5:70543899-70543918 MsG0580027894.01.T01:intron 45.0%
TGGGAAGAGTGGTAGTTTCT+GGG + Chr5:70543515-70543534 None:intergenic 45.0%
TTGTTTGGCAACCGTAGTTG+TGG + Chr5:70543422-70543441 None:intergenic 45.0%
! AATTGTTGTTGGGGAGTCTG+AGG + Chr5:70543928-70543947 None:intergenic 45.0%
!! AAGGAGGCATCAAGGATTTG+AGG + Chr5:70543698-70543717 None:intergenic 45.0%
!! TGCATAAGAAGGAGGCATCA+AGG + Chr5:70543706-70543725 None:intergenic 45.0%
!! TGTTGTGGTGGATGCAAAAG+TGG + Chr5:70543541-70543560 None:intergenic 45.0%
!!! TATGGTTTTGGGTACGAGTG+TGG - Chr5:70543872-70543891 MsG0580027894.01.T01:intron 45.0%
!! TATAATTTAATTAAGTAATA+TGG + Chr5:70545106-70545125 None:intergenic 5.0%
CCAAGATCCTTCACTTGGAG+TGG + Chr5:70543397-70543416 None:intergenic 50.0%
CCACTCCAAGTGAAGGATCT+TGG - Chr5:70543394-70543413 MsG0580027894.01.T01:CDS 50.0%
CCATAATCAGTCACGTGCCA+TGG - Chr5:70544260-70544279 MsG0580027894.01.T01:CDS 50.0%
CCATGGCACGTGACTGATTA+TGG + Chr5:70544263-70544282 None:intergenic 50.0%
CCTAGACGTTTAACGCATCC+GGG - Chr5:70543900-70543919 MsG0580027894.01.T01:intron 50.0%
CCTTAGCACTAACCGAGACA+AGG + Chr5:70544437-70544456 None:intergenic 50.0%
CCTTGTCTCGGTTAGTGCTA+AGG - Chr5:70544434-70544453 MsG0580027894.01.T01:CDS 50.0%
CTGCAATGTGAGTCATCCTC+TGG + Chr5:70543632-70543651 None:intergenic 50.0%
GACGGTCGCGTACTTAACAA+AGG - Chr5:70545030-70545049 MsG0580027894.01.T01:CDS 50.0%
GGATCTTGGAGCCACAACTA+CGG - Chr5:70543408-70543427 MsG0580027894.01.T01:intron 50.0%
GGCACGTGACTGATTATGGT+TGG + Chr5:70544259-70544278 None:intergenic 50.0%
GGGAAGAGTGGTAGTTTCTG+GGG + Chr5:70543514-70543533 None:intergenic 50.0%
GGTGGATGCAAAAGTGGAAG+TGG + Chr5:70543535-70543554 None:intergenic 50.0%
GTGGGAAGAGTGGTAGTTTC+TGG + Chr5:70543516-70543535 None:intergenic 50.0%
TGGCTCCAAGATCCTTCACT+TGG + Chr5:70543402-70543421 None:intergenic 50.0%
!! GGTGCACCCATAGAGTATTG+AGG + Chr5:70544213-70544232 None:intergenic 50.0%
AGGAGGAAATCGAGAGCCAG+AGG - Chr5:70543613-70543632 MsG0580027894.01.T01:intron 55.0%
CCCGGATGCGTTAAACGTCT+AGG + Chr5:70543903-70543922 None:intergenic 55.0%
GGGTAGCACGTGATGTTCTG+AGG + Chr5:70544234-70544253 None:intergenic 55.0%
GTCGTCGTTTGCTCTGACGA+GGG + Chr5:70543572-70543591 None:intergenic 55.0%
TCGTCGTTTGCTCTGACGAG+GGG + Chr5:70543571-70543590 None:intergenic 55.0%
ACGAGGGGCTGTGGTTGTTG+TGG + Chr5:70543556-70543575 None:intergenic 60.0%
AGGGGCTGTGGTTGTTGTGG+TGG + Chr5:70543553-70543572 None:intergenic 60.0%
CGTCGTCGTTTGCTCTGACG+AGG + Chr5:70543573-70543592 None:intergenic 60.0%
TTTGCTCTGACGAGGGGCTG+TGG + Chr5:70543565-70543584 None:intergenic 60.0%
GTTGGGGAGTCTGAGGAGCC+CGG + Chr5:70543921-70543940 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 70543315 70545309 70543315 ID=MsG0580027894.01;Name=MsG0580027894.01
Chr5 mRNA 70543315 70545309 70543315 ID=MsG0580027894.01.T01;Parent=MsG0580027894.01;Name=MsG0580027894.01.T01;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|3|0|309
Chr5 exon 70544893 70545309 70544893 ID=MsG0580027894.01.T01:exon:23253;Parent=MsG0580027894.01.T01
Chr5 exon 70544169 70544579 70544169 ID=MsG0580027894.01.T01:exon:23252;Parent=MsG0580027894.01.T01
Chr5 exon 70543315 70543416 70543315 ID=MsG0580027894.01.T01:exon:23251;Parent=MsG0580027894.01.T01
Chr5 CDS 70544893 70545309 70544893 ID=MsG0580027894.01.T01:cds;Parent=MsG0580027894.01.T01
Chr5 CDS 70544169 70544579 70544169 ID=MsG0580027894.01.T01:cds;Parent=MsG0580027894.01.T01
Chr5 CDS 70543315 70543416 70543315 ID=MsG0580027894.01.T01:cds;Parent=MsG0580027894.01.T01
Gene Sequence

>MsG0580027894.01.T01

ATGGCCTTAGAGGCTATAGTTTTTCCACAAGATCCATTGATTTACAGTTGCAAAGACTACTTGTACTCCTTAGTTGAAACCACTCCAAGTGAAGGATCTTGGAGCCACAACTACGGTTGCCAAACAAAAGACGAAGAAGATCTTTTTAAAATCAGCAATAACTTCGATCATAATCTCCTTTCAAATTGGGATTCTTCCCCAGAAACTACCACTCTTCCCACTTCCACTTTTGCATCCACCACAACAACCACAGCCCCTCGTCAGAGCAAACGACGACGCACTGTGAATGCAAAAAATGAGGAGGAAATCGAGAGCCAGAGGATGACTCACATTGCAGTTGAGCGCAATCGAAGAAAACAGATGAATGAGTACCTCGATGTCCTCAAATCCTTGATGCCTCCTTCTTATGCAAAAAGGGGTGATCAAGCATCAATAGTTGGCGGTGCAATTAACTTCTTGAAGGAGCTAGAACATAATCTACAATTCATGAAGGGACAAAAGAAAATAAACAAACAAGCTCATGAAAATAGTTTCATTACTTGTTCTTGTTCATCACCACCTTTTACTGAGTTTTTCATGTTTCCTCAATACTCTATGGGTGCACCTCAGAACATCACGTGCTACCCTACCAACCATAATCAGTCACGTGCCATGGCAGATATAGAAGTGACTTTGGTTGATAGTCATACAAATATAAAGATAATGTTGAAAAAACGACAAGGACAGGTTATGAAGATGGTTGTTGGGATTCAAAATCTTGGCTTCAACATTCTACACCTTAATGTTTCAAGTGTGGATGATAATGTCCTTGTCTCGGTTAGTGCTAAGGTAGAAGAAGGGTGTCAACTACTGAACACAGTGGATGGAATTGCAGCTGCAGTGAATGAGCTATTACGTAGAATTCAGGTGGAAGATGCTGCTTTGACCTGA
Protein sequence

>MsG0580027894.01.T01

MALEAIVFPQDPLIYSCKDYLYSLVETTPSEGSWSHNYGCQTKDEEDLFKISNNFDHNLLSNWDSSPETTTLPTSTFASTTTTTAPRQSKRRRTVNAKNEEEIESQRMTHIAVERNRRKQMNEYLDVLKSLMPPSYAKRGDQASIVGGAINFLKELEHNLQFMKGQKKINKQAHENSFITCSCSSPPFTEFFMFPQYSMGAPQNITCYPTNHNQSRAMADIEVTLVDSHTNIKIMLKKRQGQVMKMVVGIQNLGFNILHLNVSSVDDNVLVSVSAKVEEGCQLLNTVDGIAAAVNELLRRIQVEDAALT*