AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027949.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027949.01.T01 MTR_7g104800 99.363 157 1 0 11 167 271 427 1.53e-111 325
MsG0580027949.01.T01 MTR_4g052940 75.159 157 38 1 11 167 283 438 4.29e-81 248
MsG0580027949.01.T01 MTR_7g010360 66.879 157 51 1 11 167 523 678 4.67e-64 209
MsG0580027949.01.T01 MTR_7g118120 57.143 161 63 4 11 167 279 437 1.08e-46 158
MsG0580027949.01.T01 MTR_4g052940 80.000 70 14 0 11 80 283 352 1.15e-34 124
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027949.01.T01 AT3G52660 61.006 159 59 2 11 167 267 424 1.26e-63 202
MsG0580027949.01.T01 AT3G52660 61.006 159 59 2 11 167 267 424 1.26e-63 202
MsG0580027949.01.T01 AT3G52660 61.006 159 59 2 11 167 267 424 1.26e-63 202
MsG0580027949.01.T01 AT4G00830 55.346 159 67 3 11 167 283 439 7.23e-52 172
MsG0580027949.01.T01 AT4G00830 55.346 159 67 3 11 167 283 439 7.23e-52 172
MsG0580027949.01.T01 AT4G00830 55.346 159 67 3 11 167 291 447 7.37e-52 172
MsG0580027949.01.T01 AT4G00830 55.346 159 67 3 11 167 291 447 7.53e-52 172
MsG0580027949.01.T01 AT4G00830 55.346 159 67 3 11 167 291 447 7.53e-52 172
MsG0580027949.01.T01 AT4G00830 55.346 159 67 3 11 167 291 447 7.53e-52 172
MsG0580027949.01.T01 AT5G28390 44.586 157 34 1 11 167 33 136 1.18e-39 132

Find 42 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTATGGTTGGAGGTGGATA+TGG 0.314554 5:-71629895 MsG0580027949.01.T01:CDS
GGTGCTGTTGGTGCAGGATA+TGG 0.366546 5:-71629874 MsG0580027949.01.T01:CDS
TATCCACCTCCTCTTGGTTA+TGG 0.404216 5:-71629916 MsG0580027949.01.T01:CDS
CTTGGTTATGGTATGGTTGG+AGG 0.434215 5:-71629904 MsG0580027949.01.T01:CDS
GGACAAGAAAAGAGCAGATA+TGG 0.438969 5:-71630195 MsG0580027949.01.T01:CDS
TCTCCGGTACGCGAGTTGCA+TGG 0.440728 5:+71630934 None:intergenic
CCTGCGTATCCACCTCCTCT+TGG 0.442592 5:-71629922 MsG0580027949.01.T01:CDS
ACCTCCTCTTGGTTATGGTA+TGG 0.445868 5:-71629911 MsG0580027949.01.T01:CDS
CCTCTTGGTTATGGTATGGT+TGG 0.461631 5:-71629907 MsG0580027949.01.T01:CDS
AAAGAGCTGTTTGAACATCA+TGG 0.465220 5:-71630255 MsG0580027949.01.T01:CDS
GGAGGTGGATATGGTGCTGT+TGG 0.465667 5:-71629886 MsG0580027949.01.T01:CDS
GGTGCAGGATATGGTGCTGC+TGG 0.466144 5:-71629865 MsG0580027949.01.T01:CDS
CAAGCAGATCAGAAGTCATC+TGG 0.473781 5:-71629976 MsG0580027949.01.T01:CDS
ACGGAGAAGTATGAAATTGA+TGG 0.475658 5:-71630123 MsG0580027949.01.T01:intron
CTCCGGTACGCGAGTTGCAT+GGG 0.476134 5:+71630935 None:intergenic
TAGATACAGGGCGCCGTCTC+CGG 0.476937 5:+71630918 None:intergenic
GGAATGGACAGGTCAAACTT+TGG 0.479105 5:-71630019 MsG0580027949.01.T01:intron
GGTTATGGTATGGTTGGAGG+TGG 0.495269 5:-71629901 MsG0580027949.01.T01:CDS
GGCATCATTGTCATGCCAGC+AGG 0.499937 5:+71628837 None:intergenic
GCTCTCCCTCCTGCTAAAGC+TGG 0.501443 5:-71630216 MsG0580027949.01.T01:CDS
GGTCCGGGAGCAACTCCTGC+TGG 0.509565 5:-71628852 MsG0580027949.01.T01:CDS
GACCCATGCAACTCGCGTAC+CGG 0.513305 5:-71630937 None:intergenic
TGATAGGTCAAGTGCAATGA+AGG 0.523880 5:-71630157 MsG0580027949.01.T01:CDS
TGCAACTCGCGTACCGGAGA+CGG 0.526708 5:-71630931 MsG0580027949.01.T01:CDS
GGATATGGTGCTGTTGGTGC+AGG 0.526774 5:-71629880 MsG0580027949.01.T01:CDS
TCTTGTCCAGCTTTAGCAGG+AGG 0.538943 5:+71630210 None:intergenic
ATGCCAGCAGGAGTTGCTCC+CGG 0.544143 5:+71628849 None:intergenic
CTTGTCCAGCTTTAGCAGGA+GGG 0.546775 5:+71630211 None:intergenic
CTTCCATCCGGTAAAAGCAT+TGG 0.547885 5:+71628816 None:intergenic
GATGACTTCTGATCTGCTTG+TGG 0.549430 5:+71629979 None:intergenic
AATGTGCAGCCACTGATGTA+TGG 0.550181 5:-71628873 MsG0580027949.01.T01:intron
AATGAAGGCATTGAAGAATA+CGG 0.554131 5:-71630142 MsG0580027949.01.T01:CDS
ACATATGCAATCCTTCCATC+CGG 0.561671 5:+71628804 None:intergenic
TGGTGCTGCTGGCTTTGCAC+CGG 0.565428 5:-71629854 MsG0580027949.01.T01:intron
GCAGCCACTGATGTATGGTC+CGG 0.571930 5:-71628868 MsG0580027949.01.T01:intron
TCATGGAAAGATCACAAAAG+TGG 0.575285 5:-71630238 MsG0580027949.01.T01:CDS
ATACCATAACCAAGAGGAGG+TGG 0.583928 5:+71629913 None:intergenic
CCAAGAGGAGGTGGATACGC+AGG 0.593051 5:+71629922 None:intergenic
CAGCCACTGATGTATGGTCC+GGG 0.596285 5:-71628867 MsG0580027949.01.T01:CDS
ACCATACCATAACCAAGAGG+AGG 0.682760 5:+71629910 None:intergenic
GCTCCCGGACCATACATCAG+TGG 0.700475 5:+71628864 None:intergenic
CCAACCATACCATAACCAAG+AGG 0.748224 5:+71629907 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATTATAAAATTACTAAA+TGG - Chr5:71630620-71630639 MsG0580027949.01.T01:intron 10.0%
!! AAAGAAATCAATAATTCATT+AGG + Chr5:71629326-71629345 None:intergenic 15.0%
!! ATTCTATTGAATATCATTAT+GGG - Chr5:71630297-71630316 MsG0580027949.01.T01:CDS 15.0%
!! GAATAAATTTAGAAACAAAT+TGG - Chr5:71628976-71628995 MsG0580027949.01.T01:intron 15.0%
!! TTTAACAAAACATATATCTA+TGG - Chr5:71630658-71630677 MsG0580027949.01.T01:intron 15.0%
!!! AATTTTTATGTTTCTTCTAA+AGG + Chr5:71630023-71630042 None:intergenic 15.0%
!! CATTAATCTCAAAAAAATGA+GGG - Chr5:71629939-71629958 MsG0580027949.01.T01:CDS 20.0%
!! CATTCTATTGAATATCATTA+TGG - Chr5:71630296-71630315 MsG0580027949.01.T01:CDS 20.0%
!! TATTAAGGTTAAGGTAAAAA+TGG + Chr5:71629012-71629031 None:intergenic 20.0%
!! TCATTAATCTCAAAAAAATG+AGG - Chr5:71629938-71629957 MsG0580027949.01.T01:CDS 20.0%
!! TTCTATTGAATATCATTATG+GGG - Chr5:71630298-71630317 MsG0580027949.01.T01:CDS 20.0%
!!! TTTTACCTTAACCTTAATAA+TGG - Chr5:71629013-71629032 MsG0580027949.01.T01:intron 20.0%
! AATAATTCATTAGGAACAAC+AGG + Chr5:71629317-71629336 None:intergenic 25.0%
! CAAAAAAGACTAAAACTAGA+AGG + Chr5:71629915-71629934 None:intergenic 25.0%
! CTTAAAGAATGGAAAGTTTA+TGG - Chr5:71630466-71630485 MsG0580027949.01.T01:intron 25.0%
! GAGATGATTATTTAGTTGTT+TGG + Chr5:71630740-71630759 None:intergenic 25.0%
! TGGAAAACAGTATTCAAAAA+GGG + Chr5:71629644-71629663 None:intergenic 25.0%
! TGTCATTAAGAAACATAGAT+TGG + Chr5:71629664-71629683 None:intergenic 25.0%
! TTACATGATCTTAATTAGCA+TGG - Chr5:71629056-71629075 MsG0580027949.01.T01:intron 25.0%
! TTATTAAGCCTAAAAGAACT+TGG - Chr5:71630353-71630372 MsG0580027949.01.T01:intron 25.0%
! TTCTTCAATTGATTGTTGAT+GGG - Chr5:71630144-71630163 MsG0580027949.01.T01:CDS 25.0%
! TTGGAAAACAGTATTCAAAA+AGG + Chr5:71629645-71629664 None:intergenic 25.0%
! TTTCTTCAATTGATTGTTGA+TGG - Chr5:71630143-71630162 MsG0580027949.01.T01:CDS 25.0%
!! ATACTCTAATGAGATGTTTT+AGG + Chr5:71628841-71628860 None:intergenic 25.0%
AACACATTCTTTCCATTGTT+TGG - Chr5:71630490-71630509 MsG0580027949.01.T01:intron 30.0%
AAGAGGTTAACATCAATTCT+TGG - Chr5:71630197-71630216 MsG0580027949.01.T01:CDS 30.0%
AATCTCAAAAAAATGAGGGT+TGG - Chr5:71629943-71629962 MsG0580027949.01.T01:CDS 30.0%
AGGAAAGAAAGCTTAAAGAA+TGG - Chr5:71630455-71630474 MsG0580027949.01.T01:intron 30.0%
ATCTCAAAAAAATGAGGGTT+GGG - Chr5:71629944-71629963 MsG0580027949.01.T01:CDS 30.0%
ATCTTTCCTCTTACTTTCTT+TGG - Chr5:71630815-71630834 MsG0580027949.01.T01:intron 30.0%
CAGAAAGCAAACATTAATGT+TGG + Chr5:71629191-71629210 None:intergenic 30.0%
CTAATTAAGATCATGTAACC+TGG + Chr5:71629054-71629073 None:intergenic 30.0%
GTAAGAGGAAAGATTGTTTA+AGG + Chr5:71630794-71630813 None:intergenic 30.0%
GTGATCCATTATTAAGGTTA+AGG + Chr5:71629021-71629040 None:intergenic 30.0%
TTAAGTGTTCGAAATTTCGA+TGG - Chr5:71630260-71630279 MsG0580027949.01.T01:CDS 30.0%
TTAATGTTGGCAACAAAATG+AGG + Chr5:71629178-71629197 None:intergenic 30.0%
TTACTGGTGATCCATTATTA+AGG + Chr5:71629027-71629046 None:intergenic 30.0%
TTCTTTCCTTCATCTATCAA+TGG + Chr5:71630444-71630463 None:intergenic 30.0%
TTGAACTGTATCAATTTCAC+TGG - Chr5:71630089-71630108 MsG0580027949.01.T01:intron 30.0%
TTGTTTGGTATCAAAGAAAG+TGG + Chr5:71630725-71630744 None:intergenic 30.0%
! CGTGAAAATTTTATCCAGTT+GGG - Chr5:71630055-71630074 MsG0580027949.01.T01:intron 30.0%
! TCGTGAAAATTTTATCCAGT+TGG - Chr5:71630054-71630073 MsG0580027949.01.T01:intron 30.0%
!! AATGAAGGCATTGAAGAATA+CGG - Chr5:71629587-71629606 MsG0580027949.01.T01:intron 30.0%
!!! AAAGAAAGCATCTTTTTGGT+GGG - Chr5:71630530-71630549 MsG0580027949.01.T01:intron 30.0%
!!! ATGGAAAGAAAGCATCTTTT+TGG - Chr5:71630526-71630545 MsG0580027949.01.T01:intron 30.0%
!!! GGTTGAAAGTTTTAGAACAT+GGG + Chr5:71630557-71630576 None:intergenic 30.0%
!!! GTTTTAGGAAGTTAGATACA+GGG + Chr5:71628826-71628845 None:intergenic 30.0%
!!! TGTTTTAGGAAGTTAGATAC+AGG + Chr5:71628827-71628846 None:intergenic 30.0%
AAAGAGCTGTTTGAACATCA+TGG - Chr5:71629474-71629493 MsG0580027949.01.T01:intron 35.0%
AAATTTCCTGATCCAGTAAG+AGG + Chr5:71629136-71629155 None:intergenic 35.0%
AACAGAGCTGAGACATAAAA+AGG - Chr5:71628910-71628929 MsG0580027949.01.T01:intron 35.0%
AAGAAAGCTTGAAGAAAGCT+TGG - Chr5:71630587-71630606 MsG0580027949.01.T01:intron 35.0%
AGAAAGCTTGAAGAAAGCTT+GGG - Chr5:71630588-71630607 MsG0580027949.01.T01:intron 35.0%
AGAAAGTGAGTAGAAAGTGA+AGG + Chr5:71630769-71630788 None:intergenic 35.0%
CAAAACATAAATCACCCAAC+TGG + Chr5:71630072-71630091 None:intergenic 35.0%
CTTACAAAGCAACCAAACAA+TGG + Chr5:71630505-71630524 None:intergenic 35.0%
GAAAGTGAGTAGAAAGTGAA+GGG + Chr5:71630768-71630787 None:intergenic 35.0%
GTAAGAGGAAAGATTGTAAG+AGG + Chr5:71630809-71630828 None:intergenic 35.0%
TCATGGAAAGATCACAAAAG+TGG - Chr5:71629491-71629510 MsG0580027949.01.T01:intron 35.0%
TCTCAAAAAAATGAGGGTTG+GGG - Chr5:71629945-71629964 MsG0580027949.01.T01:CDS 35.0%
TGTCTATTTGCAACTGCAAT+TGG - Chr5:71629270-71629289 MsG0580027949.01.T01:intron 35.0%
TTGCAGTTGCAAATAGACAA+AGG + Chr5:71629269-71629288 None:intergenic 35.0%
TTGGTATCAAAGAAAGTGGA+AGG + Chr5:71630721-71630740 None:intergenic 35.0%
TTGGTTCCATTGATAGATGA+AGG - Chr5:71630435-71630454 MsG0580027949.01.T01:intron 35.0%
TTTCGAAGAAGCGAAATCTT+TGG - Chr5:71629215-71629234 MsG0580027949.01.T01:intron 35.0%
! AAAAATAGAGCATCAAGCAG+TGG + Chr5:71629086-71629105 None:intergenic 35.0%
! AATGATGCCAATGCTTTTAC+CGG - Chr5:71630906-71630925 MsG0580027949.01.T01:intron 35.0%
! ACGGAGAAGTATGAAATTGA+TGG - Chr5:71629606-71629625 MsG0580027949.01.T01:intron 35.0%
! CATAAGCACCAAGTTCTTTT+AGG + Chr5:71630364-71630383 None:intergenic 35.0%
! CGATTCTGAGTTATGTTTTC+TGG + Chr5:71629450-71629469 None:intergenic 35.0%
! GTTTGGTTGCTTTGTAAGAA+TGG - Chr5:71630507-71630526 MsG0580027949.01.T01:intron 35.0%
! TCAATTTCACTGGTTGTAAG+TGG - Chr5:71630099-71630118 MsG0580027949.01.T01:intron 35.0%
! TCTGAGTTATGTTTTCTGGA+AGG + Chr5:71629446-71629465 None:intergenic 35.0%
!! AAAAGAACTTGGTGCTTATG+TGG - Chr5:71630364-71630383 MsG0580027949.01.T01:intron 35.0%
!! AACCATCAAGTTTTCTGGAA+TGG - Chr5:71629694-71629713 MsG0580027949.01.T01:intron 35.0%
!! GTTTTGTTCACTTTGCTGAT+AGG - Chr5:71629556-71629575 MsG0580027949.01.T01:intron 35.0%
!! GTTTTGTTCTCTGTGTATGT+CGG + Chr5:71628878-71628897 None:intergenic 35.0%
!! TAAGTTTTATAACCGTGACC+TGG - Chr5:71629385-71629404 MsG0580027949.01.T01:intron 35.0%
!! TGTAAGTGGTTCTGAACTTT+CGG - Chr5:71630113-71630132 MsG0580027949.01.T01:intron 35.0%
!! TTTCCATTTTGTGTGCTGAT+TGG - Chr5:71629104-71629123 MsG0580027949.01.T01:intron 35.0%
!!! GAAAGAAAGCATCTTTTTGG+TGG - Chr5:71630529-71630548 MsG0580027949.01.T01:intron 35.0%
!!! GGGTTGAAAGTTTTAGAACA+TGG + Chr5:71630558-71630577 None:intergenic 35.0%
ACATATGCAATCCTTCCATC+CGG + Chr5:71630928-71630947 None:intergenic 40.0%
AGAGCTGAGACATAAAAAGG+AGG - Chr5:71628913-71628932 MsG0580027949.01.T01:intron 40.0%
CATGTAACCTGGCAATTTAC+TGG + Chr5:71629043-71629062 None:intergenic 40.0%
CTGCAATTGGTTGAACCAAA+TGG - Chr5:71629283-71629302 MsG0580027949.01.T01:intron 40.0%
GAAGGTAAAGAGCAAGTTAC+CGG + Chr5:71629897-71629916 None:intergenic 40.0%
GGACAAGAAAAGAGCAGATA+TGG - Chr5:71629534-71629553 MsG0580027949.01.T01:intron 40.0%
GGATCACCAAAGAAAGTAAG+AGG + Chr5:71630824-71630843 None:intergenic 40.0%
GTCCATTCCAGAAAACTTGA+TGG + Chr5:71629699-71629718 None:intergenic 40.0%
GTTTCTTAATGACAGCGAAC+TGG - Chr5:71629670-71629689 MsG0580027949.01.T01:intron 40.0%
TCGCTGATAAGAGGTCATTA+AGG - Chr5:71630406-71630425 MsG0580027949.01.T01:intron 40.0%
TGATAGGTCAAGTGCAATGA+AGG - Chr5:71629572-71629591 MsG0580027949.01.T01:intron 40.0%
TTATGTCTCAGCTCTGTTCT+GGG + Chr5:71628908-71628927 None:intergenic 40.0%
TTGAAGAAAGCTTGGGATTG+AGG - Chr5:71630595-71630614 MsG0580027949.01.T01:intron 40.0%
TTTATGTCTCAGCTCTGTTC+TGG + Chr5:71628909-71628928 None:intergenic 40.0%
! ATTGTAGCCAGTGTACTGAT+TGG + Chr5:71629991-71630010 None:intergenic 40.0%
! CAACAGGAAAGTACACCATT+TGG + Chr5:71629301-71629320 None:intergenic 40.0%
! CTGGTAACCATCAAGTTTTC+TGG - Chr5:71629689-71629708 MsG0580027949.01.T01:intron 40.0%
!! TTTTCTTGTCCAGCTTTAGC+AGG + Chr5:71629525-71629544 None:intergenic 40.0%
!!! TCAAGTTTTCTGGAATGGAC+AGG - Chr5:71629699-71629718 MsG0580027949.01.T01:intron 40.0%
AATGTGCAGCCACTGATGTA+TGG - Chr5:71630856-71630875 MsG0580027949.01.T01:intron 45.0%
ACATCAGTGGCTGCACATTT+AGG + Chr5:71630855-71630874 None:intergenic 45.0%
ACCATACCATAACCAAGAGG+AGG + Chr5:71629822-71629841 None:intergenic 45.0%
ACCTCCTCTTGGTTATGGTA+TGG - Chr5:71629818-71629837 MsG0580027949.01.T01:intron 45.0%
ACCTCTTTCAGCCTATGATG+AGG + Chr5:71630184-71630203 None:intergenic 45.0%
ATACCATAACCAAGAGGAGG+TGG + Chr5:71629819-71629838 None:intergenic 45.0%
CAAGCAGATCAGAAGTCATC+TGG - Chr5:71629753-71629772 MsG0580027949.01.T01:intron 45.0%
CAAGCTTTCTTCGCTGTCAT+GGG + Chr5:71630578-71630597 None:intergenic 45.0%
CATCAGTGGCTGCACATTTA+GGG + Chr5:71630854-71630873 None:intergenic 45.0%
CCAACCATACCATAACCAAG+AGG + Chr5:71629825-71629844 None:intergenic 45.0%
CCTCCAATCAGCACACAAAA+TGG + Chr5:71629110-71629129 None:intergenic 45.0%
CCTCTTGGTTATGGTATGGT+TGG - Chr5:71629822-71629841 MsG0580027949.01.T01:intron 45.0%
CCTCTTTCAGCCTATGATGA+GGG + Chr5:71630183-71630202 None:intergenic 45.0%
CTCTTTCAGCCTATGATGAG+GGG + Chr5:71630182-71630201 None:intergenic 45.0%
CTTGGTTATGGTATGGTTGG+AGG - Chr5:71629825-71629844 MsG0580027949.01.T01:intron 45.0%
GAGGTCATTAAGGCTGTGTT+TGG - Chr5:71630416-71630435 MsG0580027949.01.T01:intron 45.0%
GATGACTTCTGATCTGCTTG+TGG + Chr5:71629753-71629772 None:intergenic 45.0%
GATGCTTCCAATCAGTACAC+TGG - Chr5:71629981-71630000 MsG0580027949.01.T01:CDS 45.0%
GGAATGGACAGGTCAAACTT+TGG - Chr5:71629710-71629729 MsG0580027949.01.T01:intron 45.0%
TATCCACCTCCTCTTGGTTA+TGG - Chr5:71629813-71629832 MsG0580027949.01.T01:intron 45.0%
TCAAGCTTTCTTCGCTGTCA+TGG + Chr5:71630579-71630598 None:intergenic 45.0%
TGGATCACCAGTAAATTGCC+AGG - Chr5:71629033-71629052 MsG0580027949.01.T01:intron 45.0%
TTTCACCTGTACTAAGCACC+AGG + Chr5:71629406-71629425 None:intergenic 45.0%
! ATGCCAATGCTTTTACCGGA+TGG - Chr5:71630910-71630929 MsG0580027949.01.T01:intron 45.0%
! CAATGCTTTTACCGGATGGA+AGG - Chr5:71630914-71630933 MsG0580027949.01.T01:intron 45.0%
! CTGCACATTTAGGGTGTGTT+TGG + Chr5:71630845-71630864 None:intergenic 45.0%
! CTTCCATCCGGTAAAAGCAT+TGG + Chr5:71630916-71630935 None:intergenic 45.0%
!! TGGAAGCATCTTCTTAGCCT+AGG + Chr5:71629971-71629990 None:intergenic 45.0%
!!! CCATTTTGTGTGCTGATTGG+AGG - Chr5:71629107-71629126 MsG0580027949.01.T01:intron 45.0%
AAAAATGAGGGTTGGGGCCT+AGG - Chr5:71629951-71629970 MsG0580027949.01.T01:CDS 50.0%
AGCGAGAGAGCAAGAGAGAT+AGG + Chr5:71630391-71630410 None:intergenic 50.0%
AGGTGTCCTCTTACTGGATC+AGG - Chr5:71629127-71629146 MsG0580027949.01.T01:intron 50.0%
ATGTTCCCTCCCCTCATCAT+AGG - Chr5:71630170-71630189 MsG0580027949.01.T01:CDS 50.0%
CCCTCATCATAGGCTGAAAG+AGG - Chr5:71630180-71630199 MsG0580027949.01.T01:CDS 50.0%
CTGTACTAAGCACCAGGTCA+CGG + Chr5:71629400-71629419 None:intergenic 50.0%
CTGTGTATGTCGGTAGAGAG+AGG + Chr5:71628868-71628887 None:intergenic 50.0%
CTTGCTCTCTCGCTGATAAG+AGG - Chr5:71630397-71630416 MsG0580027949.01.T01:intron 50.0%
GGTATGGTTGGAGGTGGATA+TGG - Chr5:71629834-71629853 MsG0580027949.01.T01:intron 50.0%
GGTTATGGTATGGTTGGAGG+TGG - Chr5:71629828-71629847 MsG0580027949.01.T01:intron 50.0%
TTCAGCCTATGATGAGGGGA+GGG + Chr5:71630178-71630197 None:intergenic 50.0%
TTTCAGCCTATGATGAGGGG+AGG + Chr5:71630179-71630198 None:intergenic 50.0%
! CTTGTCCAGCTTTAGCAGGA+GGG + Chr5:71629521-71629540 None:intergenic 50.0%
! TCTTGTCCAGCTTTAGCAGG+AGG + Chr5:71629522-71629541 None:intergenic 50.0%
!! GATTGGAGGTGTCCTCTTAC+TGG - Chr5:71629121-71629140 MsG0580027949.01.T01:intron 50.0%
CAGCCACTGATGTATGGTCC+GGG - Chr5:71630862-71630881 MsG0580027949.01.T01:intron 55.0%
CGTGACCTGGTGCTTAGTAC+AGG - Chr5:71629398-71629417 MsG0580027949.01.T01:intron 55.0%
GCAGCCACTGATGTATGGTC+CGG - Chr5:71630861-71630880 MsG0580027949.01.T01:intron 55.0%
GGCATCATTGTCATGCCAGC+AGG + Chr5:71630895-71630914 None:intergenic 55.0%
!! GGAGGTGGATATGGTGCTGT+TGG - Chr5:71629843-71629862 MsG0580027949.01.T01:intron 55.0%
!! GGATATGGTGCTGTTGGTGC+AGG - Chr5:71629849-71629868 MsG0580027949.01.T01:intron 55.0%
!! GGTGCTGTTGGTGCAGGATA+TGG - Chr5:71629855-71629874 MsG0580027949.01.T01:CDS 55.0%
ATGCCAGCAGGAGTTGCTCC+CGG + Chr5:71630883-71630902 None:intergenic 60.0%
CCAAGAGGAGGTGGATACGC+AGG + Chr5:71629810-71629829 None:intergenic 60.0%
CCTGCGTATCCACCTCCTCT+TGG - Chr5:71629807-71629826 MsG0580027949.01.T01:intron 60.0%
GCTCCCGGACCATACATCAG+TGG + Chr5:71630868-71630887 None:intergenic 60.0%
GCTCTCCCTCCTGCTAAAGC+TGG - Chr5:71629513-71629532 MsG0580027949.01.T01:intron 60.0%
TGCAACTCGCGTACCGGAGA+CGG - Chr5:71628798-71628817 MsG0580027949.01.T01:CDS 60.0%
!! GGTGCAGGATATGGTGCTGC+TGG - Chr5:71629864-71629883 MsG0580027949.01.T01:CDS 60.0%
!! TAGATACAGGGCGCCGTCTC+CGG + Chr5:71628814-71628833 None:intergenic 60.0%
!! TGGTGCTGCTGGCTTTGCAC+CGG - Chr5:71629875-71629894 MsG0580027949.01.T01:CDS 60.0%
GGTCCGGGAGCAACTCCTGC+TGG - Chr5:71630877-71630896 MsG0580027949.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 71628797 71630954 71628797 ID=MsG0580027949.01;Name=MsG0580027949.01
Chr5 mRNA 71628797 71630954 71628797 ID=MsG0580027949.01.T01;Parent=MsG0580027949.01;Name=MsG0580027949.01.T01;_AED=0.48;_eAED=1.00;_QI=0|0|0|1|0.66|0.75|4|0|167
Chr5 exon 71630925 71630954 71630925 ID=MsG0580027949.01.T01:exon:5011;Parent=MsG0580027949.01.T01
Chr5 exon 71630124 71630331 71630124 ID=MsG0580027949.01.T01:exon:5010;Parent=MsG0580027949.01.T01
Chr5 exon 71629855 71630030 71629855 ID=MsG0580027949.01.T01:exon:5009;Parent=MsG0580027949.01.T01
Chr5 exon 71628797 71628886 71628797 ID=MsG0580027949.01.T01:exon:5008;Parent=MsG0580027949.01.T01
Chr5 CDS 71630925 71630954 71630925 ID=MsG0580027949.01.T01:cds;Parent=MsG0580027949.01.T01
Chr5 CDS 71630124 71630331 71630124 ID=MsG0580027949.01.T01:cds;Parent=MsG0580027949.01.T01
Chr5 CDS 71629855 71630030 71629855 ID=MsG0580027949.01.T01:cds;Parent=MsG0580027949.01.T01
Chr5 CDS 71628797 71628886 71628797 ID=MsG0580027949.01.T01:cds;Parent=MsG0580027949.01.T01
Gene Sequence

>MsG0580027949.01.T01

ATGCAACTCGCGTACCGGAGACGGCGCCCTGTGAAAGCAGTATATGTAAAGAACCTTCCAGAAAACATAACTCAGAATCGTCTTAAAGAGCTGTTTGAACATCATGGAAAGATCACAAAAGTGGCTCTCCCTCCTGCTAAAGCTGGACAAGAAAAGAGCAGATATGGTTTTGTTCACTTTGCTGATAGGTCAAGTGCAATGAAGGCATTGAAGAATACGGAGAAGTATGAAATTGATGGTCAAACTTTGGAATGCTCACTTGCTAAGCCACAAGCAGATCAGAAGTCATCTGGTGCATCAAATTCATTCAACTCTGCTGTACTTCCTGCGTATCCACCTCCTCTTGGTTATGGTATGGTTGGAGGTGGATATGGTGCTGTTGGTGCAGGATATGGTGCTGCTGGCTTTGCACCGCCACTGATGTATGGTCCGGGAGCAACTCCTGCTGGCATGACAATGATGCCAATGCTTTTACCGGATGGAAGGATTGCATATGTATTGTAA
Protein sequence

>MsG0580027949.01.T01

MQLAYRRRRPVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEIDGQTLECSLAKPQADQKSSGASNSFNSAVLPAYPPPLGYGMVGGGYGAVGAGYGAAGFAPPLMYGPGATPAGMTMMPMLLPDGRIAYVL*