Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028683.01.T01 | AES99077.1 | 91.885 | 838 | 53 | 1 | 4 | 841 | 38 | 860 | 0 | 1572 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028683.01.T01 | B6SFA4 | 37.304 | 319 | 192 | 7 | 472 | 787 | 438 | 751 | 9.78E-52 | 197 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0580028683.01 | MsG0580028687.01 | 0.817863 | 2.645190e-52 | 1.948939e-49 |
| MsG0580028683.01 | MsG0580028777.01 | 0.802846 | 4.621030e-49 | 2.287400e-46 |
| MsG0580028683.01 | MsG0780038334.01 | 0.802630 | 5.120345e-49 | 2.520498e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028683.01.T01 | MTR_5g076310 | 91.885 | 838 | 53 | 1 | 4 | 841 | 38 | 860 | 0.0 | 1572 |
| MsG0580028683.01.T01 | MTR_5g076320 | 69.789 | 854 | 207 | 12 | 4 | 827 | 51 | 883 | 0.0 | 1150 |
| MsG0580028683.01.T01 | MTR_5g076380 | 66.860 | 863 | 241 | 8 | 4 | 840 | 38 | 881 | 0.0 | 1084 |
| MsG0580028683.01.T01 | MTR_5g076440 | 65.127 | 866 | 259 | 9 | 3 | 840 | 42 | 892 | 0.0 | 1041 |
| MsG0580028683.01.T01 | MTR_5g076500 | 65.647 | 850 | 240 | 10 | 4 | 831 | 33 | 852 | 0.0 | 1037 |
| MsG0580028683.01.T01 | MTR_5g076330 | 56.845 | 862 | 324 | 12 | 4 | 836 | 31 | 873 | 0.0 | 902 |
| MsG0580028683.01.T01 | MTR_3g064190 | 57.110 | 858 | 328 | 14 | 4 | 836 | 36 | 878 | 0.0 | 894 |
| MsG0580028683.01.T01 | MTR_5g076300 | 51.225 | 898 | 332 | 13 | 4 | 834 | 38 | 896 | 0.0 | 835 |
| MsG0580028683.01.T01 | MTR_3g436400 | 36.867 | 849 | 470 | 20 | 3 | 809 | 38 | 862 | 2.03e-160 | 509 |
| MsG0580028683.01.T01 | MTR_0189s0030 | 37.196 | 863 | 456 | 18 | 12 | 813 | 8 | 845 | 9.10e-159 | 513 |
| MsG0580028683.01.T01 | MTR_3g064210 | 50.673 | 446 | 205 | 5 | 374 | 809 | 490 | 930 | 1.32e-133 | 426 |
| MsG0580028683.01.T01 | MTR_3g064210 | 45.013 | 371 | 188 | 6 | 4 | 367 | 34 | 395 | 7.99e-80 | 280 |
| MsG0580028683.01.T01 | MTR_3g078040 | 52.212 | 226 | 85 | 6 | 4 | 226 | 56 | 261 | 1.97e-60 | 206 |
| MsG0580028683.01.T01 | MTR_8g020390 | 37.621 | 311 | 179 | 8 | 485 | 789 | 457 | 758 | 4.43e-50 | 190 |
| MsG0580028683.01.T01 | MTR_8g020390 | 37.621 | 311 | 179 | 8 | 485 | 789 | 745 | 1046 | 1.67e-49 | 190 |
| MsG0580028683.01.T01 | MTR_8g020390 | 37.621 | 311 | 179 | 8 | 485 | 789 | 962 | 1263 | 3.03e-49 | 189 |
| MsG0580028683.01.T01 | MTR_5g053930 | 37.143 | 315 | 187 | 6 | 482 | 792 | 444 | 751 | 4.69e-49 | 187 |
| MsG0580028683.01.T01 | MTR_1g052700 | 37.324 | 284 | 161 | 6 | 526 | 798 | 41 | 318 | 4.08e-48 | 174 |
| MsG0580028683.01.T01 | MTR_2g105760 | 40.278 | 288 | 151 | 7 | 520 | 792 | 1791 | 2072 | 2.32e-44 | 174 |
| MsG0580028683.01.T01 | MTR_5g013820 | 35.870 | 276 | 161 | 6 | 520 | 789 | 641 | 906 | 3.74e-40 | 160 |
| MsG0580028683.01.T01 | MTR_5g013820 | 35.870 | 276 | 161 | 6 | 520 | 789 | 641 | 906 | 3.85e-40 | 160 |
| MsG0580028683.01.T01 | MTR_7g092200 | 34.713 | 314 | 178 | 9 | 494 | 797 | 348 | 644 | 3.90e-31 | 130 |
| MsG0580028683.01.T01 | MTR_5g080800 | 52.727 | 110 | 47 | 1 | 703 | 812 | 6 | 110 | 7.02e-29 | 125 |
| MsG0580028683.01.T01 | MTR_1g040155 | 32.881 | 295 | 173 | 9 | 490 | 769 | 587 | 871 | 4.18e-27 | 119 |
| MsG0580028683.01.T01 | MTR_2g049990 | 33.968 | 315 | 164 | 13 | 492 | 780 | 252 | 548 | 1.12e-24 | 110 |
| MsG0580028683.01.T01 | MTR_5g006890 | 33.968 | 315 | 164 | 13 | 492 | 780 | 252 | 548 | 1.32e-24 | 110 |
| MsG0580028683.01.T01 | MTR_2g049990 | 33.544 | 316 | 164 | 13 | 492 | 780 | 511 | 807 | 1.34e-24 | 110 |
| MsG0580028683.01.T01 | MTR_5g006890 | 33.544 | 316 | 164 | 13 | 492 | 780 | 511 | 807 | 1.85e-24 | 110 |
| MsG0580028683.01.T01 | MTR_4g061370 | 52.252 | 111 | 43 | 3 | 4 | 113 | 527 | 628 | 1.56e-21 | 101 |
| MsG0580028683.01.T01 | MTR_8g063020 | 53.465 | 101 | 37 | 4 | 4 | 103 | 199 | 290 | 4.40e-19 | 89.7 |
| MsG0580028683.01.T01 | MTR_1g038815 | 24.263 | 577 | 327 | 25 | 223 | 763 | 873 | 1375 | 4.58e-19 | 93.6 |
| MsG0580028683.01.T01 | MTR_1g047040 | 68.627 | 51 | 11 | 1 | 756 | 801 | 4 | 54 | 5.06e-13 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028683.01.T01 | AT1G65810 | 45.854 | 820 | 397 | 13 | 4 | 802 | 43 | 836 | 0.0 | 671 |
| MsG0580028683.01.T01 | AT1G65810 | 45.854 | 820 | 397 | 13 | 4 | 802 | 43 | 836 | 0.0 | 671 |
| MsG0580028683.01.T01 | AT1G65810 | 45.854 | 820 | 397 | 13 | 4 | 802 | 43 | 836 | 0.0 | 671 |
| MsG0580028683.01.T01 | AT1G65780 | 44.406 | 867 | 397 | 15 | 3 | 816 | 31 | 865 | 0.0 | 644 |
| MsG0580028683.01.T01 | AT5G37150 | 42.652 | 837 | 406 | 18 | 2 | 808 | 26 | 818 | 0.0 | 603 |
| MsG0580028683.01.T01 | AT5G52090 | 46.796 | 671 | 316 | 12 | 163 | 808 | 1 | 655 | 0.0 | 562 |
| MsG0580028683.01.T01 | AT5G37140 | 45.954 | 692 | 321 | 13 | 148 | 808 | 2 | 671 | 0.0 | 559 |
| MsG0580028683.01.T01 | AT4G05540 | 44.909 | 717 | 311 | 19 | 106 | 775 | 10 | 689 | 4.12e-177 | 527 |
| MsG0580028683.01.T01 | AT5G37165 | 49.199 | 437 | 192 | 8 | 397 | 824 | 1 | 416 | 2.40e-129 | 394 |
| MsG0580028683.01.T01 | AT5G37030 | 61.074 | 298 | 113 | 3 | 510 | 805 | 340 | 636 | 3.61e-118 | 372 |
| MsG0580028683.01.T01 | AT5G37030 | 36.164 | 365 | 179 | 11 | 4 | 366 | 30 | 342 | 2.22e-40 | 159 |
| MsG0580028683.01.T01 | AT5G37160 | 35.149 | 404 | 192 | 13 | 4 | 366 | 39 | 413 | 6.40e-57 | 202 |
| MsG0580028683.01.T01 | AT4G15570 | 37.304 | 319 | 192 | 7 | 472 | 787 | 349 | 662 | 3.17e-53 | 198 |
| MsG0580028683.01.T01 | AT4G15570 | 37.304 | 319 | 192 | 7 | 472 | 787 | 349 | 662 | 3.17e-53 | 198 |
| MsG0580028683.01.T01 | AT4G15570 | 37.304 | 319 | 192 | 7 | 472 | 787 | 438 | 751 | 9.97e-53 | 197 |
| MsG0580028683.01.T01 | AT4G15570 | 37.304 | 319 | 192 | 7 | 472 | 787 | 438 | 751 | 9.97e-53 | 197 |
| MsG0580028683.01.T01 | AT2G19120 | 38.535 | 314 | 172 | 10 | 485 | 789 | 742 | 1043 | 5.39e-50 | 191 |
| MsG0580028683.01.T01 | AT4G30100 | 37.621 | 311 | 179 | 9 | 485 | 789 | 905 | 1206 | 1.27e-48 | 187 |
| MsG0580028683.01.T01 | AT4G30100 | 37.621 | 311 | 179 | 9 | 485 | 789 | 905 | 1206 | 1.27e-48 | 187 |
| MsG0580028683.01.T01 | AT1G16800 | 38.351 | 279 | 159 | 5 | 520 | 789 | 1649 | 1923 | 2.64e-43 | 171 |
| MsG0580028683.01.T01 | AT1G16800 | 38.351 | 279 | 159 | 5 | 520 | 789 | 1719 | 1993 | 2.67e-43 | 171 |
| MsG0580028683.01.T01 | AT1G16800 | 38.351 | 279 | 159 | 5 | 520 | 789 | 1607 | 1881 | 2.78e-43 | 171 |
| MsG0580028683.01.T01 | AT5G47010 | 34.653 | 303 | 177 | 8 | 495 | 789 | 629 | 918 | 5.06e-40 | 160 |
| MsG0580028683.01.T01 | AT5G35970 | 34.589 | 292 | 166 | 9 | 493 | 769 | 638 | 919 | 1.32e-27 | 120 |
| MsG0580028683.01.T01 | AT2G03270 | 33.882 | 304 | 166 | 12 | 492 | 780 | 339 | 622 | 1.51e-26 | 116 |
| MsG0580028683.01.T01 | AT1G05460 | 31.875 | 320 | 191 | 9 | 492 | 793 | 512 | 822 | 3.23e-26 | 116 |
| MsG0580028683.01.T01 | AT1G05460 | 31.875 | 320 | 191 | 9 | 492 | 793 | 512 | 822 | 8.70e-26 | 114 |
| MsG0580028683.01.T01 | AT2G38770 | 24.048 | 578 | 327 | 24 | 223 | 763 | 863 | 1365 | 3.50e-18 | 90.5 |
Find 146 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGCGAACTTAGTACTTTA+AGG | 0.158934 | 5:+84728473 | None:intergenic |
| CCTAAACTTAGTTTCATAAA+TGG | 0.212909 | 5:+84727134 | None:intergenic |
| ATTCTAATGTCAAACTTATA+TGG | 0.217898 | 5:-84729125 | MsG0580028683.01.T01:CDS |
| CTTTGGCATGTGGGTGTATA+AGG | 0.220381 | 5:+84728663 | None:intergenic |
| TTAGTCTCCCATCCAATATT+TGG | 0.225858 | 5:+84728820 | None:intergenic |
| AGATATTGCCTTTGGATATT+AGG | 0.226016 | 5:-84727317 | MsG0580028683.01.T01:CDS |
| ATTAATATTATAGATTAAAT+TGG | 0.234028 | 5:+84727068 | None:intergenic |
| TTACCTCTCTTGTCAAATTT+AGG | 0.243791 | 5:+84728433 | None:intergenic |
| ATAGGAATTGACCTTTATTA+AGG | 0.247367 | 5:+84727772 | None:intergenic |
| GTTCAAGTCGTCTAAGCTTT+TGG | 0.248861 | 5:+84729732 | None:intergenic |
| ATTGCAGATAAATGTGAATT+TGG | 0.276980 | 5:-84728089 | MsG0580028683.01.T01:CDS |
| GCGAATGATGCTGTCTTCTT+TGG | 0.293576 | 5:+84729215 | None:intergenic |
| CTAGGTGACATTGTGCTCTT+TGG | 0.311176 | 5:-84728934 | MsG0580028683.01.T01:CDS |
| GACAACAAATCTTCGTATTT+CGG | 0.313851 | 5:-84729548 | MsG0580028683.01.T01:CDS |
| CGGTGCTTTGATCCAAATAT+TGG | 0.319849 | 5:-84728832 | MsG0580028683.01.T01:CDS |
| TCATTGACTTGAGCATTATA+TGG | 0.321291 | 5:+84727607 | None:intergenic |
| GTTAATGTTCGTTCTGTTGA+CGG | 0.333459 | 5:-84727532 | MsG0580028683.01.T01:CDS |
| AGTATCCGTCTTCAGGCATT+TGG | 0.344368 | 5:+84729630 | None:intergenic |
| CTTGATTTGCTAAGATCTCT+TGG | 0.352926 | 5:-84728598 | MsG0580028683.01.T01:CDS |
| GATTTATCATCAAGCTTGTC+TGG | 0.361516 | 5:-84729946 | MsG0580028683.01.T01:CDS |
| GCCGATCAACATAGCCAATA+TGG | 0.362134 | 5:+84729692 | None:intergenic |
| TCTTGTCCTCTCCAGCGTTA+TGG | 0.365090 | 5:+84727219 | None:intergenic |
| CCATTTATGAAACTAAGTTT+AGG | 0.365983 | 5:-84727134 | MsG0580028683.01.T01:CDS |
| CTCAAAAGTCCCTACCATAT+TGG | 0.368893 | 5:-84729706 | MsG0580028683.01.T01:CDS |
| TTCTAATGTCAAACTTATAT+GGG | 0.369776 | 5:-84729124 | MsG0580028683.01.T01:CDS |
| CATGTTCAGTATCCGTCTTC+AGG | 0.371054 | 5:+84729623 | None:intergenic |
| GCAATGAGATCTCCACTTCC+AGG | 0.378512 | 5:+84729772 | None:intergenic |
| TCTTGCGCAGATATTGCCTT+TGG | 0.395742 | 5:-84727325 | MsG0580028683.01.T01:intron |
| AACTTTCTTGATTTCACAAA+AGG | 0.396001 | 5:+84729909 | None:intergenic |
| TTCGAGATCAAACTACTTGA+AGG | 0.399779 | 5:-84727167 | MsG0580028683.01.T01:CDS |
| TCAAGTGAAATGAAAGACTT+TGG | 0.401940 | 5:+84728646 | None:intergenic |
| ATGATTAAAAGCCTTAATAA+AGG | 0.402438 | 5:-84727783 | MsG0580028683.01.T01:intron |
| TCTTGGAATTTCTTTGTGGC+AGG | 0.403678 | 5:-84728581 | MsG0580028683.01.T01:CDS |
| TGTATTGCTTAACTTTCTCC+TGG | 0.405353 | 5:+84727581 | None:intergenic |
| AGAACTCTTTGCATGGGAAT+AGG | 0.412411 | 5:+84727982 | None:intergenic |
| TCACTTGAGCTTGAAACATA+TGG | 0.413113 | 5:-84728958 | MsG0580028683.01.T01:CDS |
| AACATAATTAAAACAGTGTT+GGG | 0.430399 | 5:-84729490 | MsG0580028683.01.T01:CDS |
| GTTGCTGACTTAAATGTCTC+TGG | 0.433727 | 5:+84730018 | None:intergenic |
| TTTCATTCCTCTGTTGATTG+AGG | 0.433729 | 5:-84729980 | MsG0580028683.01.T01:CDS |
| CCGAAGTATGTTTGAGAGGC+TGG | 0.436430 | 5:-84728066 | MsG0580028683.01.T01:CDS |
| GATTTGTTGTCATGTTCATA+AGG | 0.437043 | 5:+84729560 | None:intergenic |
| TCGGTTGCATAGGTTAGTTA+TGG | 0.440947 | 5:-84728983 | MsG0580028683.01.T01:CDS |
| AACTACTTCCTCCAGGTTAG+TGG | 0.450292 | 5:-84727093 | MsG0580028683.01.T01:CDS |
| GATCTCTTGGAATTTCTTTG+TGG | 0.451968 | 5:-84728585 | MsG0580028683.01.T01:CDS |
| GAGAGGACAAGAACTTGGCC+CGG | 0.452850 | 5:-84727208 | MsG0580028683.01.T01:CDS |
| TTTGCATGGGAATAGGCTAA+TGG | 0.453317 | 5:+84727989 | None:intergenic |
| CGTTCTGTTGACGGTTTCCA+AGG | 0.454205 | 5:-84727523 | MsG0580028683.01.T01:CDS |
| TTAAATTGGTTCCACTAACC+TGG | 0.461174 | 5:+84727082 | None:intergenic |
| CGGAGACCAGACAGCTGTAA+TGG | 0.462836 | 5:+84728253 | None:intergenic |
| TCAGAAACTGAATGAATCTC+AGG | 0.463804 | 5:-84729190 | MsG0580028683.01.T01:CDS |
| TAATCAACAGTGACTCGGTT+TGG | 0.464826 | 5:-84727280 | MsG0580028683.01.T01:CDS |
| CGCTGGAGAGGACAAGAACT+TGG | 0.470914 | 5:-84727213 | MsG0580028683.01.T01:CDS |
| TAATATCTTCCTCACCGCCT+TGG | 0.472392 | 5:+84727506 | None:intergenic |
| AGAAAGACATCGACAAGGCC+TGG | 0.473987 | 5:+84728880 | None:intergenic |
| CTCTCTTGTCAAATTTAGGA+AGG | 0.474198 | 5:+84728437 | None:intergenic |
| AGGTAAACTGCATACAGTTT+AGG | 0.480695 | 5:+84729580 | None:intergenic |
| ACAATTCCATTACAGCTGTC+TGG | 0.482984 | 5:-84728259 | MsG0580028683.01.T01:CDS |
| GGACTTGAGCAGCCGTATCA+TGG | 0.484656 | 5:+84728789 | None:intergenic |
| TAGTTTCCTTCCTTGACGAC+AGG | 0.489692 | 5:+84727936 | None:intergenic |
| GAGCAAATGTGGCTTTGACT+AGG | 0.491787 | 5:-84727420 | MsG0580028683.01.T01:CDS |
| GTTGTCTCTGATCTCCGATC+AGG | 0.491839 | 5:+84728221 | None:intergenic |
| CAACATAATTAAAACAGTGT+TGG | 0.491988 | 5:-84729491 | MsG0580028683.01.T01:CDS |
| AGCAAATGTGGCTTTGACTA+GGG | 0.493408 | 5:-84727419 | MsG0580028683.01.T01:CDS |
| CCATGCAAAGAGTTCTATGA+TGG | 0.494325 | 5:-84727975 | MsG0580028683.01.T01:CDS |
| TGCAAAACTGCAGTATTAGT+AGG | 0.495961 | 5:+84729015 | None:intergenic |
| TTGATGCGGTACAGAAGATT+AGG | 0.496056 | 5:+84728368 | None:intergenic |
| TGCTCAAGTCAATGAAATCC+AGG | 0.496380 | 5:-84727599 | MsG0580028683.01.T01:CDS |
| CTTTGGCAATAGTAAGAGAA+TGG | 0.497648 | 5:-84728917 | MsG0580028683.01.T01:CDS |
| GAGCTTGAAACATATGGTCT+AGG | 0.499081 | 5:-84728952 | MsG0580028683.01.T01:CDS |
| CATCATAGAACTCTTTGCAT+GGG | 0.508938 | 5:+84727976 | None:intergenic |
| CCATCATAGAACTCTTTGCA+TGG | 0.510398 | 5:+84727975 | None:intergenic |
| GGAAATTATGAACCTGGAAG+TGG | 0.515000 | 5:-84729784 | MsG0580028683.01.T01:CDS |
| AAACTTATATGGGGACCACC+AGG | 0.518565 | 5:-84729114 | MsG0580028683.01.T01:CDS |
| GCTTTGATCCAAATATTGGA+TGG | 0.524668 | 5:-84728828 | MsG0580028683.01.T01:CDS |
| ACTTTCTTGATTTCACAAAA+GGG | 0.528924 | 5:+84729910 | None:intergenic |
| ACAAGACATCATTAATAGCC+CGG | 0.531429 | 5:+84727189 | None:intergenic |
| TCAAATCGAAGTGGTAATGT+TGG | 0.532406 | 5:-84727463 | MsG0580028683.01.T01:CDS |
| ATGTGGCTTTGACTAGGGCT+AGG | 0.535295 | 5:-84727414 | MsG0580028683.01.T01:intron |
| ACCATATTGGCTATGTTGAT+CGG | 0.538852 | 5:-84729693 | MsG0580028683.01.T01:CDS |
| GCTAAGGGTAAAGAGAAACT+TGG | 0.541971 | 5:-84727858 | MsG0580028683.01.T01:CDS |
| AATTTGACAAGAGAGGTAAC+AGG | 0.542741 | 5:-84728429 | MsG0580028683.01.T01:CDS |
| CTCCGATCAGGATGCAATTG+CGG | 0.542955 | 5:+84728233 | None:intergenic |
| AAATTCAGAATTAGAATCCC+AGG | 0.544243 | 5:+84727558 | None:intergenic |
| TCAGAGACAACTTCCTGCAT+TGG | 0.545601 | 5:-84728209 | MsG0580028683.01.T01:CDS |
| CTCCGCAATTGCATCCTGAT+CGG | 0.549945 | 5:-84728235 | MsG0580028683.01.T01:CDS |
| CTTCCTAAATTTGACAAGAG+AGG | 0.550139 | 5:-84728436 | MsG0580028683.01.T01:CDS |
| TTATTAACCTTAGAGAACAT+AGG | 0.550198 | 5:+84730045 | None:intergenic |
| AGAGATTGTTTCCATAACGC+TGG | 0.550588 | 5:-84727230 | MsG0580028683.01.T01:CDS |
| GATACGGCTGCTCAAGTCCA+TGG | 0.550884 | 5:-84728785 | MsG0580028683.01.T01:CDS |
| AGAGGACAAGAACTTGGCCC+GGG | 0.551022 | 5:-84727207 | MsG0580028683.01.T01:CDS |
| AAGTGGCAATTCGGTTGCAT+AGG | 0.551999 | 5:-84728993 | MsG0580028683.01.T01:CDS |
| AATCTCTTCTCTTAGCATCA+AGG | 0.554242 | 5:+84727246 | None:intergenic |
| GTTCTATGATGGAAAGCTAT+CGG | 0.560594 | 5:-84727964 | MsG0580028683.01.T01:CDS |
| AAGTCTGAAGAACATGGTTG+AGG | 0.560607 | 5:-84727823 | MsG0580028683.01.T01:CDS |
| ATATGGGGACCACCAGGGAC+AGG | 0.561447 | 5:-84729108 | MsG0580028683.01.T01:CDS |
| CTAACTTGCGATCCATGATA+CGG | 0.562315 | 5:-84728801 | MsG0580028683.01.T01:CDS |
| TCTCTTGTCAAATTTAGGAA+GGG | 0.562902 | 5:+84728438 | None:intergenic |
| CGGATACTGAACATGATTTG+CGG | 0.564288 | 5:-84729615 | MsG0580028683.01.T01:CDS |
| AAGCATCAACTACTTCCTCC+AGG | 0.564305 | 5:-84727100 | MsG0580028683.01.T01:CDS |
| TCTTCAACTGTATGTTATGA+CGG | 0.564610 | 5:+84729833 | None:intergenic |
| CTTTGATCCAAATATTGGAT+GGG | 0.564987 | 5:-84728827 | MsG0580028683.01.T01:CDS |
| ACAAAGAAGAAAGTAAGCAT+AGG | 0.565094 | 5:-84727640 | MsG0580028683.01.T01:CDS |
| TTGTTCTGCCAGTGTTCATG+AGG | 0.567776 | 5:-84727663 | MsG0580028683.01.T01:intron |
| TTTGCATGCAAATTTCTCCA+TGG | 0.567837 | 5:+84728768 | None:intergenic |
| AAAGAGAAACTTGGACATTG+TGG | 0.572122 | 5:-84727849 | MsG0580028683.01.T01:CDS |
| ATCGGATGCTCCTGTCGTCA+AGG | 0.573119 | 5:-84727946 | MsG0580028683.01.T01:CDS |
| GATGGTGGAAATTATGAACC+TGG | 0.576276 | 5:-84729790 | MsG0580028683.01.T01:CDS |
| CCAGCCTCTCAAACATACTT+CGG | 0.578772 | 5:+84728066 | None:intergenic |
| TTGGCCGAAGTATGTTTGAG+AGG | 0.579094 | 5:-84728070 | MsG0580028683.01.T01:CDS |
| ATGGAATTAAGTTCTCATCC+AGG | 0.579291 | 5:-84728898 | MsG0580028683.01.T01:CDS |
| TAGAACGCTTGAATGTATGC+AGG | 0.582341 | 5:+84728514 | None:intergenic |
| ATCATCCAAATGCCTGAAGA+CGG | 0.584103 | 5:-84729635 | MsG0580028683.01.T01:CDS |
| TTGCATTTCCTAATATCCAA+AGG | 0.588675 | 5:+84727309 | None:intergenic |
| TTGAGGTGTTCACCCTCTGA+GGG | 0.589298 | 5:+84729511 | None:intergenic |
| GATGCTCCTGTCGTCAAGGA+AGG | 0.593374 | 5:-84727942 | MsG0580028683.01.T01:CDS |
| AGAGACATTTAAGTCAGCAA+CGG | 0.593682 | 5:-84730016 | MsG0580028683.01.T01:CDS |
| CAAGACATCATTAATAGCCC+GGG | 0.595796 | 5:+84727190 | None:intergenic |
| AAATAGACGAAGAGCAAATG+TGG | 0.609951 | 5:-84727431 | MsG0580028683.01.T01:CDS |
| TCCTGCATTGGTGAAAAGCA+AGG | 0.611872 | 5:-84728197 | MsG0580028683.01.T01:intron |
| TCAACATAGCCAATATGGTA+GGG | 0.614703 | 5:+84729697 | None:intergenic |
| GTTGAGGTGTTCACCCTCTG+AGG | 0.615713 | 5:+84729510 | None:intergenic |
| TACTCTAATCAACAGTGACT+CGG | 0.616087 | 5:-84727285 | MsG0580028683.01.T01:CDS |
| AAGAATACATATCTCCTACA+AGG | 0.617133 | 5:+84727901 | None:intergenic |
| TGCACTGAATTCACCCTCAG+AGG | 0.624932 | 5:-84729524 | MsG0580028683.01.T01:CDS |
| GCACTGAATTCACCCTCAGA+GGG | 0.625189 | 5:-84729523 | MsG0580028683.01.T01:CDS |
| TTGTTTCCATAACGCTGGAG+AGG | 0.629988 | 5:-84727225 | MsG0580028683.01.T01:CDS |
| TCTGTTGACGGTTTCCAAGG+CGG | 0.630468 | 5:-84727520 | MsG0580028683.01.T01:CDS |
| AGAAAGTTAAGCAATACACC+TGG | 0.632247 | 5:-84727576 | MsG0580028683.01.T01:CDS |
| TAGTTTAACAGAACTTGATG+CGG | 0.633625 | 5:+84728354 | None:intergenic |
| CATGGGAATAGGCTAATGGA+AGG | 0.634810 | 5:+84727993 | None:intergenic |
| AATGAAAGACTTTGGCATGT+GGG | 0.636369 | 5:+84728654 | None:intergenic |
| ATCAACATAGCCAATATGGT+AGG | 0.643979 | 5:+84729696 | None:intergenic |
| CGCGTTTCCTCAATCAACAG+AGG | 0.644784 | 5:+84729973 | None:intergenic |
| GAAAGTTAAGCAATACACCT+GGG | 0.646620 | 5:-84727575 | MsG0580028683.01.T01:CDS |
| TCTAATGTCAAACTTATATG+GGG | 0.647267 | 5:-84729123 | MsG0580028683.01.T01:CDS |
| ACCGCTTGAGATTCTCTACA+CGG | 0.650347 | 5:+84728851 | None:intergenic |
| ACTGTGAGATCAAATCGAAG+TGG | 0.657908 | 5:-84727472 | MsG0580028683.01.T01:CDS |
| AACTTATATGGGGACCACCA+GGG | 0.661316 | 5:-84729113 | MsG0580028683.01.T01:CDS |
| TGACGGTTTCCAAGGCGGTG+AGG | 0.670301 | 5:-84727515 | MsG0580028683.01.T01:CDS |
| AAATGAAAGACTTTGGCATG+TGG | 0.671681 | 5:+84728653 | None:intergenic |
| AATTGGTTCCACTAACCTGG+AGG | 0.680607 | 5:+84727085 | None:intergenic |
| TGGACAAAGTCTGAAGAACA+TGG | 0.689987 | 5:-84727829 | MsG0580028683.01.T01:CDS |
| TGTTAAACTAAACACAGAGG+AGG | 0.690714 | 5:-84728341 | MsG0580028683.01.T01:CDS |
| ACCGTGTAGAGAATCTCAAG+CGG | 0.705339 | 5:-84728852 | MsG0580028683.01.T01:CDS |
| TTCTGTTAAACTAAACACAG+AGG | 0.738980 | 5:-84728344 | MsG0580028683.01.T01:CDS |
| TATCAAGAAAGACATCGACA+AGG | 0.743652 | 5:+84728875 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATAATTAAAACAGTGTT+GGG | - | Chr5:84727634-84727653 | MsG0580028683.01.T01:CDS | 20.0% |
| !! | ATGATTAAAAGCCTTAATAA+AGG | - | Chr5:84729341-84729360 | MsG0580028683.01.T01:intron | 20.0% |
| !! | ATTCTAATGTCAAACTTATA+TGG | - | Chr5:84727999-84728018 | MsG0580028683.01.T01:CDS | 20.0% |
| !! | CGATTACTAAAAATTGAATA+GGG | + | Chr5:84728813-84728832 | None:intergenic | 20.0% |
| !! | GTATGCTACATAATAAATTA+AGG | + | Chr5:84727707-84727726 | None:intergenic | 20.0% |
| !! | TCGATTACTAAAAATTGAAT+AGG | + | Chr5:84728814-84728833 | None:intergenic | 20.0% |
| !! | TTCTAATGTCAAACTTATAT+GGG | - | Chr5:84728000-84728019 | MsG0580028683.01.T01:CDS | 20.0% |
| !!! | AAAGTGATTTTTCTTGAATT+TGG | + | Chr5:84728569-84728588 | None:intergenic | 20.0% |
| !!! | TCTTTTATTAACATAGCTAA+GGG | - | Chr5:84729251-84729270 | MsG0580028683.01.T01:CDS | 20.0% |
| !!! | TTCTTTTATTAACATAGCTA+AGG | - | Chr5:84729250-84729269 | MsG0580028683.01.T01:CDS | 20.0% |
| ! | AACTTTCTTGATTTCACAAA+AGG | + | Chr5:84727218-84727237 | None:intergenic | 25.0% |
| ! | ACTTTCTTGATTTCACAAAA+GGG | + | Chr5:84727217-84727236 | None:intergenic | 25.0% |
| ! | ATACAAATCAAGCATTAAAC+AGG | + | Chr5:84727829-84727848 | None:intergenic | 25.0% |
| ! | ATAGGAATTGACCTTTATTA+AGG | + | Chr5:84729355-84729374 | None:intergenic | 25.0% |
| ! | ATTGCAGATAAATGTGAATT+TGG | - | Chr5:84729035-84729054 | MsG0580028683.01.T01:CDS | 25.0% |
| ! | ATTTATTATGTAGCATACTG+TGG | - | Chr5:84727709-84727728 | MsG0580028683.01.T01:intron | 25.0% |
| ! | CAACATAATTAAAACAGTGT+TGG | - | Chr5:84727633-84727652 | MsG0580028683.01.T01:CDS | 25.0% |
| ! | CCATTTATGAAACTAAGTTT+AGG | - | Chr5:84729990-84730009 | MsG0580028683.01.T01:CDS | 25.0% |
| ! | CCTAAACTTAGTTTCATAAA+TGG | + | Chr5:84729993-84730012 | None:intergenic | 25.0% |
| ! | TACGAGACAAAATTTCAAAT+AGG | + | Chr5:84729373-84729392 | None:intergenic | 25.0% |
| ! | TCTAATGTCAAACTTATATG+GGG | - | Chr5:84728001-84728020 | MsG0580028683.01.T01:CDS | 25.0% |
| ! | TTCAAGAAAAATCACTTTAG+TGG | - | Chr5:84728571-84728590 | MsG0580028683.01.T01:CDS | 25.0% |
| !! | TTAAAATGCTTTTGAGCTTT+GGG | + | Chr5:84727265-84727284 | None:intergenic | 25.0% |
| !! | TTGATTCACATTCTTTTAGT+TGG | + | Chr5:84728846-84728865 | None:intergenic | 25.0% |
| !!! | AAAAAAACGATTTTCAGGTA+TGG | - | Chr5:84727456-84727475 | MsG0580028683.01.T01:CDS | 25.0% |
| !!! | ACACTGTTTTAATTATGTTG+AGG | + | Chr5:84727633-84727652 | None:intergenic | 25.0% |
| !!! | ATACCTGAAAATCGTTTTTT+TGG | + | Chr5:84727457-84727476 | None:intergenic | 25.0% |
| !!! | TGATTCACATTCTTTTAGTT+GGG | + | Chr5:84728845-84728864 | None:intergenic | 25.0% |
| !!! | TTTAAAATGCTTTTGAGCTT+TGG | + | Chr5:84727266-84727285 | None:intergenic | 25.0% |
| AAAGCGAACTTAGTACTTTA+AGG | + | Chr5:84728654-84728673 | None:intergenic | 30.0% | |
| AAATTCAGAATTAGAATCCC+AGG | + | Chr5:84729569-84729588 | None:intergenic | 30.0% | |
| AAGAATACATATCTCCTACA+AGG | + | Chr5:84729226-84729245 | None:intergenic | 30.0% | |
| ACAAAGAAGAAAGTAAGCAT+AGG | - | Chr5:84729484-84729503 | MsG0580028683.01.T01:CDS | 30.0% | |
| AGATATTGCCTTTGGATATT+AGG | - | Chr5:84729807-84729826 | MsG0580028683.01.T01:CDS | 30.0% | |
| CTTTGATCCAAATATTGGAT+GGG | - | Chr5:84728297-84728316 | MsG0580028683.01.T01:CDS | 30.0% | |
| GACAACAAATCTTCGTATTT+CGG | - | Chr5:84727576-84727595 | MsG0580028683.01.T01:CDS | 30.0% | |
| TAACATACCCAATAAACCAA+CGG | - | Chr5:84727737-84727756 | MsG0580028683.01.T01:intron | 30.0% | |
| TAGTTTAACAGAACTTGATG+CGG | + | Chr5:84728773-84728792 | None:intergenic | 30.0% | |
| TCAAGTGAAATGAAAGACTT+TGG | + | Chr5:84728481-84728500 | None:intergenic | 30.0% | |
| TCTCTTGTCAAATTTAGGAA+GGG | + | Chr5:84728689-84728708 | None:intergenic | 30.0% | |
| TCTTCAACTGTATGTTATGA+CGG | + | Chr5:84727294-84727313 | None:intergenic | 30.0% | |
| TTACCTCTCTTGTCAAATTT+AGG | + | Chr5:84728694-84728713 | None:intergenic | 30.0% | |
| TTCTGTTAAACTAAACACAG+AGG | - | Chr5:84728780-84728799 | MsG0580028683.01.T01:CDS | 30.0% | |
| TTGCATTTCCTAATATCCAA+AGG | + | Chr5:84729818-84729837 | None:intergenic | 30.0% | |
| ! | ACATTTTATAGTGTGGAAGA+TGG | - | Chr5:84727316-84727335 | MsG0580028683.01.T01:CDS | 30.0% |
| ! | AGCAGAAATTTTGTGAACAA+AGG | - | Chr5:84728413-84728432 | MsG0580028683.01.T01:CDS | 30.0% |
| ! | CAAAGCTTCACTATTTTCTT+CGG | + | Chr5:84727885-84727904 | None:intergenic | 30.0% |
| ! | GCAGAAATTTTGTGAACAAA+GGG | - | Chr5:84728414-84728433 | MsG0580028683.01.T01:CDS | 30.0% |
| ! | TATAACAAGCTTTTCCTTGT+AGG | - | Chr5:84729209-84729228 | MsG0580028683.01.T01:CDS | 30.0% |
| !! | GAAGAGTACATTTTATAGTG+TGG | - | Chr5:84727309-84727328 | MsG0580028683.01.T01:CDS | 30.0% |
| !! | GATTTGTTGTCATGTTCATA+AGG | + | Chr5:84727567-84727586 | None:intergenic | 30.0% |
| !! | TCATTGACTTGAGCATTATA+TGG | + | Chr5:84729520-84729539 | None:intergenic | 30.0% |
| !!! | TGGTAATTTTAGGATACAAG+AGG | - | Chr5:84729078-84729097 | MsG0580028683.01.T01:CDS | 30.0% |
| AAAGAGAAACTTGGACATTG+TGG | - | Chr5:84729275-84729294 | MsG0580028683.01.T01:intron | 35.0% | |
| AAATAGACGAAGAGCAAATG+TGG | - | Chr5:84729693-84729712 | MsG0580028683.01.T01:CDS | 35.0% | |
| AAATGAAAGACTTTGGCATG+TGG | + | Chr5:84728474-84728493 | None:intergenic | 35.0% | |
| AATCTCTTCTCTTAGCATCA+AGG | + | Chr5:84729881-84729900 | None:intergenic | 35.0% | |
| AATGAAAGACTTTGGCATGT+GGG | + | Chr5:84728473-84728492 | None:intergenic | 35.0% | |
| AATTTGACAAGAGAGGTAAC+AGG | - | Chr5:84728695-84728714 | MsG0580028683.01.T01:CDS | 35.0% | |
| ACAAGACATCATTAATAGCC+CGG | + | Chr5:84729938-84729957 | None:intergenic | 35.0% | |
| AGAAAGTTAAGCAATACACC+TGG | - | Chr5:84729548-84729567 | MsG0580028683.01.T01:CDS | 35.0% | |
| AGAGACATTTAAGTCAGCAA+CGG | - | Chr5:84727108-84727127 | MsG0580028683.01.T01:CDS | 35.0% | |
| AGGTAAACTGCATACAGTTT+AGG | + | Chr5:84727547-84727566 | None:intergenic | 35.0% | |
| ATCAACATAGCCAATATGGT+AGG | + | Chr5:84727431-84727450 | None:intergenic | 35.0% | |
| ATGGAATTAAGTTCTCATCC+AGG | - | Chr5:84728226-84728245 | MsG0580028683.01.T01:CDS | 35.0% | |
| CATCATAGAACTCTTTGCAT+GGG | + | Chr5:84729151-84729170 | None:intergenic | 35.0% | |
| CTCTCTTGTCAAATTTAGGA+AGG | + | Chr5:84728690-84728709 | None:intergenic | 35.0% | |
| CTTCCTAAATTTGACAAGAG+AGG | - | Chr5:84728688-84728707 | MsG0580028683.01.T01:CDS | 35.0% | |
| CTTTGGCAATAGTAAGAGAA+TGG | - | Chr5:84728207-84728226 | MsG0580028683.01.T01:CDS | 35.0% | |
| GAAAGTTAAGCAATACACCT+GGG | - | Chr5:84729549-84729568 | MsG0580028683.01.T01:CDS | 35.0% | |
| GATCTCTTGGAATTTCTTTG+TGG | - | Chr5:84728539-84728558 | MsG0580028683.01.T01:CDS | 35.0% | |
| GATTTATCATCAAGCTTGTC+TGG | - | Chr5:84727178-84727197 | MsG0580028683.01.T01:CDS | 35.0% | |
| GCTTTGATCCAAATATTGGA+TGG | - | Chr5:84728296-84728315 | MsG0580028683.01.T01:CDS | 35.0% | |
| GTTAATGTTCGTTCTGTTGA+CGG | - | Chr5:84729592-84729611 | MsG0580028683.01.T01:CDS | 35.0% | |
| TACTCTAATCAACAGTGACT+CGG | - | Chr5:84729839-84729858 | MsG0580028683.01.T01:CDS | 35.0% | |
| TATCAAGAAAGACATCGACA+AGG | + | Chr5:84728252-84728271 | None:intergenic | 35.0% | |
| TCAACATAGCCAATATGGTA+GGG | + | Chr5:84727430-84727449 | None:intergenic | 35.0% | |
| TCACTTGAGCTTGAAACATA+TGG | - | Chr5:84728166-84728185 | MsG0580028683.01.T01:intron | 35.0% | |
| TCAGAAACTGAATGAATCTC+AGG | - | Chr5:84727934-84727953 | MsG0580028683.01.T01:CDS | 35.0% | |
| TGCAAAACTGCAGTATTAGT+AGG | + | Chr5:84728112-84728131 | None:intergenic | 35.0% | |
| TGTATTGCTTAACTTTCTCC+TGG | + | Chr5:84729546-84729565 | None:intergenic | 35.0% | |
| TGTTAAACTAAACACAGAGG+AGG | - | Chr5:84728783-84728802 | MsG0580028683.01.T01:CDS | 35.0% | |
| TTAGTCTCCCATCCAATATT+TGG | + | Chr5:84728307-84728326 | None:intergenic | 35.0% | |
| TTCGAGATCAAACTACTTGA+AGG | - | Chr5:84729957-84729976 | MsG0580028683.01.T01:CDS | 35.0% | |
| TTTGCATGCAAATTTCTCCA+TGG | + | Chr5:84728359-84728378 | None:intergenic | 35.0% | |
| ! | ACCATATTGGCTATGTTGAT+CGG | - | Chr5:84727431-84727450 | MsG0580028683.01.T01:CDS | 35.0% |
| ! | CTTCACTATTTTCTTCGGAA+AGG | + | Chr5:84727880-84727899 | None:intergenic | 35.0% |
| ! | GTTCTATGATGGAAAGCTAT+CGG | - | Chr5:84729160-84729179 | MsG0580028683.01.T01:CDS | 35.0% |
| ! | TAATACTGCAGTTTTGCAAG+TGG | - | Chr5:84728114-84728133 | MsG0580028683.01.T01:intron | 35.0% |
| ! | TCAAATCGAAGTGGTAATGT+TGG | - | Chr5:84729661-84729680 | MsG0580028683.01.T01:CDS | 35.0% |
| ! | TGCATGCAAAAAAAAGCGTA+GGG | - | Chr5:84728369-84728388 | MsG0580028683.01.T01:CDS | 35.0% |
| ! | TTAAATTGGTTCCACTAACC+TGG | + | Chr5:84730045-84730064 | None:intergenic | 35.0% |
| ! | TTCAAGTCGTCTAAGCTTTT+GGG | + | Chr5:84727394-84727413 | None:intergenic | 35.0% |
| ! | TTGCATGCAAAAAAAAGCGT+AGG | - | Chr5:84728368-84728387 | MsG0580028683.01.T01:CDS | 35.0% |
| ! | TTTCATTCCTCTGTTGATTG+AGG | - | Chr5:84727144-84727163 | MsG0580028683.01.T01:CDS | 35.0% |
| ! | TTTGAGAGGCTGGTAATTTT+AGG | - | Chr5:84729068-84729087 | MsG0580028683.01.T01:CDS | 35.0% |
| ! | TTTTATAGTGTGGAAGATGG+TGG | - | Chr5:84727319-84727338 | MsG0580028683.01.T01:intron | 35.0% |
| !! | CTTGATTTGCTAAGATCTCT+TGG | - | Chr5:84728526-84728545 | MsG0580028683.01.T01:CDS | 35.0% |
| !! | GCTTGATTTGTATTTCAGAG+TGG | - | Chr5:84727836-84727855 | MsG0580028683.01.T01:CDS | 35.0% |
| !! | TTCACATTCTTTTAGTTGGG+CGG | + | Chr5:84728842-84728861 | None:intergenic | 35.0% |
| AAGTCTGAAGAACATGGTTG+AGG | - | Chr5:84729301-84729320 | MsG0580028683.01.T01:intron | 40.0% | |
| ACAATTCCATTACAGCTGTC+TGG | - | Chr5:84728865-84728884 | MsG0580028683.01.T01:CDS | 40.0% | |
| ACTGTGAGATCAAATCGAAG+TGG | - | Chr5:84729652-84729671 | MsG0580028683.01.T01:CDS | 40.0% | |
| AGAACTCTTTGCATGGGAAT+AGG | + | Chr5:84729145-84729164 | None:intergenic | 40.0% | |
| AGAGATTGTTTCCATAACGC+TGG | - | Chr5:84729894-84729913 | MsG0580028683.01.T01:CDS | 40.0% | |
| ATACCCAATAAACCAACGGT+CGG | - | Chr5:84727741-84727760 | MsG0580028683.01.T01:intron | 40.0% | |
| ATCATCCAAATGCCTGAAGA+CGG | - | Chr5:84727489-84727508 | MsG0580028683.01.T01:CDS | 40.0% | |
| CAAGACATCATTAATAGCCC+GGG | + | Chr5:84729937-84729956 | None:intergenic | 40.0% | |
| CCATCATAGAACTCTTTGCA+TGG | + | Chr5:84729152-84729171 | None:intergenic | 40.0% | |
| CCATGCAAAGAGTTCTATGA+TGG | - | Chr5:84729149-84729168 | MsG0580028683.01.T01:CDS | 40.0% | |
| CGGATACTGAACATGATTTG+CGG | - | Chr5:84727509-84727528 | MsG0580028683.01.T01:CDS | 40.0% | |
| CGGTGCTTTGATCCAAATAT+TGG | - | Chr5:84728292-84728311 | MsG0580028683.01.T01:CDS | 40.0% | |
| CTCAAAAGTCCCTACCATAT+TGG | - | Chr5:84727418-84727437 | MsG0580028683.01.T01:CDS | 40.0% | |
| GAGCTTGAAACATATGGTCT+AGG | - | Chr5:84728172-84728191 | MsG0580028683.01.T01:intron | 40.0% | |
| GCTAAGGGTAAAGAGAAACT+TGG | - | Chr5:84729266-84729285 | MsG0580028683.01.T01:CDS | 40.0% | |
| GGAAATTATGAACCTGGAAG+TGG | - | Chr5:84727340-84727359 | MsG0580028683.01.T01:intron | 40.0% | |
| TAGAACGCTTGAATGTATGC+AGG | + | Chr5:84728613-84728632 | None:intergenic | 40.0% | |
| TCTTGGAATTTCTTTGTGGC+AGG | - | Chr5:84728543-84728562 | MsG0580028683.01.T01:CDS | 40.0% | |
| TGCTCAAGTCAATGAAATCC+AGG | - | Chr5:84729525-84729544 | MsG0580028683.01.T01:CDS | 40.0% | |
| TGGACAAAGTCTGAAGAACA+TGG | - | Chr5:84729295-84729314 | MsG0580028683.01.T01:intron | 40.0% | |
| TTCTTTGTCCTCATGAACAC+TGG | + | Chr5:84729472-84729491 | None:intergenic | 40.0% | |
| TTGATGCGGTACAGAAGATT+AGG | + | Chr5:84728759-84728778 | None:intergenic | 40.0% | |
| TTTGCATGGGAATAGGCTAA+TGG | + | Chr5:84729138-84729157 | None:intergenic | 40.0% | |
| ! | CAGTTTTGCAAGTGGCAATT+CGG | - | Chr5:84728122-84728141 | MsG0580028683.01.T01:intron | 40.0% |
| ! | CGGCCAAAAAAACGATTTTC+AGG | - | Chr5:84727451-84727470 | MsG0580028683.01.T01:CDS | 40.0% |
| ! | CTAACTTGCGATCCATGATA+CGG | - | Chr5:84728323-84728342 | MsG0580028683.01.T01:CDS | 40.0% |
| ! | GTTCAAGTCGTCTAAGCTTT+TGG | + | Chr5:84727395-84727414 | None:intergenic | 40.0% |
| ! | TCGGTTGCATAGGTTAGTTA+TGG | - | Chr5:84728141-84728160 | MsG0580028683.01.T01:intron | 40.0% |
| !! | AGCAAATGTGGCTTTGACTA+GGG | - | Chr5:84729705-84729724 | MsG0580028683.01.T01:CDS | 40.0% |
| !! | GATGGTGGAAATTATGAACC+TGG | - | Chr5:84727334-84727353 | MsG0580028683.01.T01:intron | 40.0% |
| !! | GTTGCTGACTTAAATGTCTC+TGG | + | Chr5:84727109-84727128 | None:intergenic | 40.0% |
| !! | TAATCAACAGTGACTCGGTT+TGG | - | Chr5:84729844-84729863 | MsG0580028683.01.T01:CDS | 40.0% |
| AAACTTATATGGGGACCACC+AGG | - | Chr5:84728010-84728029 | MsG0580028683.01.T01:CDS | 45.0% | |
| AACTACTTCCTCCAGGTTAG+TGG | - | Chr5:84730031-84730050 | MsG0580028683.01.T01:CDS | 45.0% | |
| AACTTATATGGGGACCACCA+GGG | - | Chr5:84728011-84728030 | MsG0580028683.01.T01:CDS | 45.0% | |
| AAGCATCAACTACTTCCTCC+AGG | - | Chr5:84730024-84730043 | MsG0580028683.01.T01:CDS | 45.0% | |
| AAGTGGCAATTCGGTTGCAT+AGG | - | Chr5:84728131-84728150 | MsG0580028683.01.T01:intron | 45.0% | |
| ACCGCTTGAGATTCTCTACA+CGG | + | Chr5:84728276-84728295 | None:intergenic | 45.0% | |
| ACCGTGTAGAGAATCTCAAG+CGG | - | Chr5:84728272-84728291 | MsG0580028683.01.T01:CDS | 45.0% | |
| AGTATCCGTCTTCAGGCATT+TGG | + | Chr5:84727497-84727516 | None:intergenic | 45.0% | |
| CATGGGAATAGGCTAATGGA+AGG | + | Chr5:84729134-84729153 | None:intergenic | 45.0% | |
| CATGTTCAGTATCCGTCTTC+AGG | + | Chr5:84727504-84727523 | None:intergenic | 45.0% | |
| CCAGCCTCTCAAACATACTT+CGG | + | Chr5:84729061-84729080 | None:intergenic | 45.0% | |
| CTAGGTGACATTGTGCTCTT+TGG | - | Chr5:84728190-84728209 | MsG0580028683.01.T01:intron | 45.0% | |
| CTTTGGCATGTGGGTGTATA+AGG | + | Chr5:84728464-84728483 | None:intergenic | 45.0% | |
| GCCGATCAACATAGCCAATA+TGG | + | Chr5:84727435-84727454 | None:intergenic | 45.0% | |
| GCGAATGATGCTGTCTTCTT+TGG | + | Chr5:84727912-84727931 | None:intergenic | 45.0% | |
| TAATATCTTCCTCACCGCCT+TGG | + | Chr5:84729621-84729640 | None:intergenic | 45.0% | |
| TACCCAATAAACCAACGGTC+GGG | - | Chr5:84727742-84727761 | MsG0580028683.01.T01:intron | 45.0% | |
| TAGTTTCCTTCCTTGACGAC+AGG | + | Chr5:84729191-84729210 | None:intergenic | 45.0% | |
| TCAGAGACAACTTCCTGCAT+TGG | - | Chr5:84728915-84728934 | MsG0580028683.01.T01:CDS | 45.0% | |
| TCTTGCGCAGATATTGCCTT+TGG | - | Chr5:84729799-84729818 | MsG0580028683.01.T01:CDS | 45.0% | |
| TTGGCCGAAGTATGTTTGAG+AGG | - | Chr5:84729054-84729073 | MsG0580028683.01.T01:CDS | 45.0% | |
| TTGTTCTGCCAGTGTTCATG+AGG | - | Chr5:84729461-84729480 | MsG0580028683.01.T01:intron | 45.0% | |
| TTGTTTCCATAACGCTGGAG+AGG | - | Chr5:84729899-84729918 | MsG0580028683.01.T01:CDS | 45.0% | |
| ! | AATTGGTTCCACTAACCTGG+AGG | + | Chr5:84730042-84730061 | None:intergenic | 45.0% |
| ! | TCCTGCATTGGTGAAAAGCA+AGG | - | Chr5:84728927-84728946 | MsG0580028683.01.T01:CDS | 45.0% |
| !! | ACCTTGCTTTTCACCAATGC+AGG | + | Chr5:84728931-84728950 | None:intergenic | 45.0% |
| !! | ATTCCCGACCGTTGGTTTAT+TGG | + | Chr5:84727748-84727767 | None:intergenic | 45.0% |
| !! | GAGCAAATGTGGCTTTGACT+AGG | - | Chr5:84729704-84729723 | MsG0580028683.01.T01:CDS | 45.0% |
| !! | TTCCCGACCGTTGGTTTATT+GGG | + | Chr5:84727747-84727766 | None:intergenic | 45.0% |
| !! | TTTGTTTTTCCTGTCCCTGG+TGG | + | Chr5:84728028-84728047 | None:intergenic | 45.0% |
| !!! | GTCTTTGTTTTTCCTGTCCC+TGG | + | Chr5:84728031-84728050 | None:intergenic | 45.0% |
| AGAAAGACATCGACAAGGCC+TGG | + | Chr5:84728247-84728266 | None:intergenic | 50.0% | |
| CCGAAGTATGTTTGAGAGGC+TGG | - | Chr5:84729058-84729077 | MsG0580028683.01.T01:CDS | 50.0% | |
| CGCGTTTCCTCAATCAACAG+AGG | + | Chr5:84727154-84727173 | None:intergenic | 50.0% | |
| CGTTCTGTTGACGGTTTCCA+AGG | - | Chr5:84729601-84729620 | MsG0580028683.01.T01:CDS | 50.0% | |
| CTCCGATCAGGATGCAATTG+CGG | + | Chr5:84728894-84728913 | None:intergenic | 50.0% | |
| CTCCGCAATTGCATCCTGAT+CGG | - | Chr5:84728889-84728908 | MsG0580028683.01.T01:CDS | 50.0% | |
| GCAATGAGATCTCCACTTCC+AGG | + | Chr5:84727355-84727374 | None:intergenic | 50.0% | |
| GCACTGAATTCACCCTCAGA+GGG | - | Chr5:84727601-84727620 | MsG0580028683.01.T01:CDS | 50.0% | |
| GTTGTCTCTGATCTCCGATC+AGG | + | Chr5:84728906-84728925 | None:intergenic | 50.0% | |
| TCACAGTAATTCCCGACCGT+TGG | + | Chr5:84727756-84727775 | None:intergenic | 50.0% | |
| TCTGTTGACGGTTTCCAAGG+CGG | - | Chr5:84729604-84729623 | MsG0580028683.01.T01:CDS | 50.0% | |
| TCTTGTCCTCTCCAGCGTTA+TGG | + | Chr5:84729908-84729927 | None:intergenic | 50.0% | |
| TGCACTGAATTCACCCTCAG+AGG | - | Chr5:84727600-84727619 | MsG0580028683.01.T01:CDS | 50.0% | |
| ! | TTGAGGTGTTCACCCTCTGA+GGG | + | Chr5:84727616-84727635 | None:intergenic | 50.0% |
| !! | ATGTGGCTTTGACTAGGGCT+AGG | - | Chr5:84729710-84729729 | MsG0580028683.01.T01:CDS | 50.0% |
| AGAGGACAAGAACTTGGCCC+GGG | - | Chr5:84729917-84729936 | MsG0580028683.01.T01:CDS | 55.0% | |
| ATCGGATGCTCCTGTCGTCA+AGG | - | Chr5:84729178-84729197 | MsG0580028683.01.T01:CDS | 55.0% | |
| CGCTGGAGAGGACAAGAACT+TGG | - | Chr5:84729911-84729930 | MsG0580028683.01.T01:CDS | 55.0% | |
| CGGAGACCAGACAGCTGTAA+TGG | + | Chr5:84728874-84728893 | None:intergenic | 55.0% | |
| GAGAGGACAAGAACTTGGCC+CGG | - | Chr5:84729916-84729935 | MsG0580028683.01.T01:CDS | 55.0% | |
| GATACGGCTGCTCAAGTCCA+TGG | - | Chr5:84728339-84728358 | MsG0580028683.01.T01:CDS | 55.0% | |
| GATGCTCCTGTCGTCAAGGA+AGG | - | Chr5:84729182-84729201 | MsG0580028683.01.T01:CDS | 55.0% | |
| GGACTTGAGCAGCCGTATCA+TGG | + | Chr5:84728338-84728357 | None:intergenic | 55.0% | |
| ! | GTTGAGGTGTTCACCCTCTG+AGG | + | Chr5:84727617-84727636 | None:intergenic | 55.0% |
| ATATGGGGACCACCAGGGAC+AGG | - | Chr5:84728016-84728035 | MsG0580028683.01.T01:CDS | 60.0% | |
| TGACGGTTTCCAAGGCGGTG+AGG | - | Chr5:84729609-84729628 | MsG0580028683.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 84727082 | 84730064 | 84727082 | ID=MsG0580028683.01;Name=MsG0580028683.01 |
| Chr5 | mRNA | 84727082 | 84730064 | 84727082 | ID=MsG0580028683.01.T01;Parent=MsG0580028683.01;Name=MsG0580028683.01.T01;_AED=0.35;_eAED=0.35;_QI=0|0|0|1|1|1|5|0|841 |
| Chr5 | exon | 84729477 | 84730064 | 84729477 | ID=MsG0580028683.01.T01:exon:8159;Parent=MsG0580028683.01.T01 |
| Chr5 | exon | 84728198 | 84729292 | 84728198 | ID=MsG0580028683.01.T01:exon:8158;Parent=MsG0580028683.01.T01 |
| Chr5 | exon | 84727784 | 84728111 | 84727784 | ID=MsG0580028683.01.T01:exon:8157;Parent=MsG0580028683.01.T01 |
| Chr5 | exon | 84727415 | 84727673 | 84727415 | ID=MsG0580028683.01.T01:exon:8156;Parent=MsG0580028683.01.T01 |
| Chr5 | exon | 84727082 | 84727337 | 84727082 | ID=MsG0580028683.01.T01:exon:8155;Parent=MsG0580028683.01.T01 |
| Chr5 | CDS | 84729477 | 84730064 | 84729477 | ID=MsG0580028683.01.T01:cds;Parent=MsG0580028683.01.T01 |
| Chr5 | CDS | 84728198 | 84729292 | 84728198 | ID=MsG0580028683.01.T01:cds;Parent=MsG0580028683.01.T01 |
| Chr5 | CDS | 84727784 | 84728111 | 84727784 | ID=MsG0580028683.01.T01:cds;Parent=MsG0580028683.01.T01 |
| Chr5 | CDS | 84727415 | 84727673 | 84727415 | ID=MsG0580028683.01.T01:cds;Parent=MsG0580028683.01.T01 |
| Chr5 | CDS | 84727082 | 84727337 | 84727082 | ID=MsG0580028683.01.T01:cds;Parent=MsG0580028683.01.T01 |
| Gene Sequence |
| Protein sequence |
