AlfalfaGEDB | MsG0580029190.01

M. sativa cultivar ZhongmuNo.1 / MsG0580029190.01

KEGG: K09588
GO: GO:0005506 GO:0016705 GO:0020037 GO:0055114
PFAM: PF00067

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029190.01.T01	XP_022765009.1	88.519	270	30	1	1	270	46	314	5.33E-178	506

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029190.01.T01	Q42569	86.441	177	24	0	2	178	46	222	1.70E-110	330

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029190.01.T01	A0A6P6AJG9	88.519	270	30	1	1	270	46	314	2.55e-178	506

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0380017542.01	MsG0580029190.01	0.834444	2.986129e-56	3.544494e-53
MsG0480021316.01	MsG0580029190.01	0.804695	1.909126e-49	9.909237e-47
MsG0480021915.01	MsG0580029190.01	0.806555	7.769656e-50	4.229901e-47
MsG0580024666.01	MsG0580029190.01	0.800835	1.196299e-48	5.626696e-46
MsG0580024673.01	MsG0580029190.01	0.805173	1.517049e-49	7.971578e-47

Showing 1 to 5 of 5 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029190.01.T01	MTR_5g082520	100.000	178	0	0	1	178	42	219	1.25e-125	366
MsG0580029190.01.T01	MTR_5g082520	94.681	94	5	0	177	270	300	393	4.66e-62	203
MsG0580029190.01.T01	MTR_3g070380	92.697	178	13	0	1	178	43	220	6.91e-119	349
MsG0580029190.01.T01	MTR_3g070380	76.531	98	22	1	177	274	302	398	1.60e-46	162
MsG0580029190.01.T01	MTR_8g077810	42.529	174	97	2	15	185	61	234	5.02e-44	156
MsG0580029190.01.T01	MTR_8g077810	51.515	99	47	1	175	272	308	406	5.74e-30	118
MsG0580029190.01.T01	MTR_5g020020	41.573	178	101	2	4	178	53	230	2.00e-42	151
MsG0580029190.01.T01	MTR_5g020020	52.632	95	44	1	177	270	313	407	2.55e-28	113
MsG0580029190.01.T01	MTR_5g010750	29.775	356	163	8	1	270	45	399	2.54e-37	137
MsG0580029190.01.T01	MTR_8g076510	32.794	247	149	5	1	239	53	290	3.88e-37	137

Showing 1 to 10 of 92 entries

Previous1 2 3 4 5…10Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029190.01.T01	AT5G05690	86.441	177	24	0	2	178	46	222	1.20e-112	331
MsG0580029190.01.T01	AT5G05690	77.660	94	20	1	177	270	304	396	3.88e-49	167
MsG0580029190.01.T01	AT5G05690	86.441	177	24	0	2	178	46	222	1.73e-111	330
MsG0580029190.01.T01	AT5G05690	77.660	94	20	1	177	270	304	396	2.09e-48	167
MsG0580029190.01.T01	AT5G05690	88.350	103	12	0	76	178	1	103	1.51e-59	193
MsG0580029190.01.T01	AT5G05690	77.660	94	20	1	177	270	185	277	2.43e-49	167
MsG0580029190.01.T01	AT3G50660	45.509	167	88	2	15	178	67	233	7.92e-44	154
MsG0580029190.01.T01	AT3G50660	50.526	95	46	1	177	270	337	431	3.19e-27	110
MsG0580029190.01.T01	AT3G50660	45.509	167	88	2	15	178	67	233	4.07e-43	154
MsG0580029190.01.T01	AT3G50660	50.526	95	46	1	177	270	337	431	9.23e-27	109

Showing 1 to 10 of 119 entries

Previous1 2 3 4 5…12Next

Find 65 sgRNAs with CRISPR-Local

Find 517 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTTCGATATTGAACC+GGG	0.542193	5:-93430833	None:intergenic
AAAATAAACCGGTTCGTTTC+CGG	0.127646	5:-93430776	None:intergenic
AAAGGTTCGATATTGAACCG+GGG	0.761422	5:-93430832	None:intergenic
AAATAAACCGGTTCGTTTCC+GGG	0.257757	5:-93430775	None:intergenic
AACCGTACCGGTTCACTCGC+TGG	0.511098	5:-93430703	None:intergenic
AAGATGATCCTTAATAATTG+AGG	0.535480	5:-93430933	None:intergenic
AAGTTGCCAAAACGTACCAT+TGG	0.587830	5:+93439714	MsG0580029190.01.T01:CDS
AATCAAGTAGCTAACCTTCT+TGG	0.287674	5:-93431029	None:intergenic
ACATAATTAGTGGGATATTT+AGG	0.221464	5:+93439923	MsG0580029190.01.T01:CDS
ACTCATGGAGGAAGCCAAGA+AGG	0.511697	5:+93431015	MsG0580029190.01.T01:CDS

Showing 1 to 10 of 65 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAAAGGCAAGAGGAT+AGG	-	Chr5:93433182-93433201	None:intergenic	30.0%
AAAGATTCTCATAGAATGAG+AGG	-	Chr5:93431997-93432016	None:intergenic	30.0%
AAATTACCAGAACTGATGAA+AGG	+	Chr5:93439116-93439135	MsG0580029190.01.T01:intron	30.0%
AACCCTTGTCAATTCAAATT+TGG	-	Chr5:93436044-93436063	None:intergenic	30.0%
AAGAAAAGAATGTGTAATGG+GGG	+	Chr5:93436498-93436517	MsG0580029190.01.T01:intron	30.0%
AATCCAGAATTAGCTAAAGA+GGG	-	Chr5:93435282-93435301	None:intergenic	30.0%
ACATGAAATCGACTATTTGT+TGG	-	Chr5:93436579-93436598	None:intergenic	30.0%
ACCCTTGTCAATTCAAATTT+GGG	-	Chr5:93436043-93436062	None:intergenic	30.0%
ACTAGTTAAGCAGCTAAAAA+CGG	+	Chr5:93438009-93438028	MsG0580029190.01.T01:intron	30.0%
AGAATGATAGTTAATCCTTG+AGG	-	Chr5:93431661-93431680	None:intergenic	30.0%

Showing 1 to 10 of 517 entries

Previous1 2 3 4 5…52Next

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	93430653	93440192	93430653	ID=MsG0580029190.01;Name=MsG0580029190.01
Chr5	mRNA	93430653	93440192	93430653	ID=MsG0580029190.01.T01;Parent=MsG0580029190.01;Name=MsG0580029190.01.T01;_AED=0.46;_eAED=0.48;_QI=0\|0\|0\|1\|1\|1\|5\|0\|279
Chr5	exon	93430653	93431036	93430653	ID=MsG0580029190.01.T01:exon:17999;Parent=MsG0580029190.01.T01
Chr5	exon	93436130	93436279	93436130	ID=MsG0580029190.01.T01:exon:18000;Parent=MsG0580029190.01.T01
Chr5	exon	93439685	93439774	93439685	ID=MsG0580029190.01.T01:exon:18001;Parent=MsG0580029190.01.T01
Chr5	exon	93439895	93439973	93439895	ID=MsG0580029190.01.T01:exon:18002;Parent=MsG0580029190.01.T01
Chr5	exon	93440056	93440192	93440056	ID=MsG0580029190.01.T01:exon:18003;Parent=MsG0580029190.01.T01
Chr5	CDS	93430653	93431036	93430653	ID=MsG0580029190.01.T01:cds;Parent=MsG0580029190.01.T01
Chr5	CDS	93436130	93436279	93436130	ID=MsG0580029190.01.T01:cds;Parent=MsG0580029190.01.T01
Chr5	CDS	93439685	93439774	93439685	ID=MsG0580029190.01.T01:cds;Parent=MsG0580029190.01.T01
Chr5	CDS	93439895	93439973	93439895	ID=MsG0580029190.01.T01:cds;Parent=MsG0580029190.01.T01
Chr5	CDS	93440056	93440192	93440056	ID=MsG0580029190.01.T01:cds;Parent=MsG0580029190.01.T01

Gene Sequence

>MsG0580029190.01.T01

ATGCAACTAATATCAGCCTACAAAACCGACAACCCAGAACCATTCATAGACCAGCGAGTGAACCGGTACGGTTCAATCTTCACTACTCACGTTTTCGGTGAACCAACTGTTTTTTCAGCTGACCCGGAAACGAACCGGTTTATTTTAATGAATGAAGGGAAACTTTTTGAATGTAGTTACCCCGGTTCAATATCGAACCTTTTGGGAAAACACTCTTTGCTTCTTATGAAAGGTTCACTTCATAAAAGAATGCATTCACTTACTATGAGTTTTGCTAACTCCTCAATTATTAAGGATCATCTTCTTCTTGATATTGATCGGCTCATTCGGCTTAATTTGGATTCTTGGTCCGACCGGGTTTTACTCATGGAGGAAGCCAAGAAGATAACGTTTGAGTTGACAGTGAAGCAGCTGATGAGTTTTGATCCAGGTGAATGGACTGAGACTCTAAGGAAAGAGTACGTTCTCGTGATTGAAGGATTTTTCACCCTTCCCTTACCACTCCTCTCTAGTACCTACCGCAGAGCAATCAAGGAAGAGCATGACCAAATCAGAGCAAAGAAAAGTTGCCAAAACGTACCATTGGAGTGGACAGATTACAAGTCAATGCAATTTACTCAATGTGTTGTGAATGAGACTTTAAGGATGGCAAACATAATTAGTGGGATATTTAGGAGAGCAATGACAGACATCAATATCAAAGGCTACACTATTCCAAAGGGGTGGAAAGTCTTTGCATCATTTCGTGCGGTACATCTAAACCCCGATCATTTCAAAGATGCGCGCAGCTTCAATCCATGGAGATGGCAGGTAGCTCACTCTCTCATTTCATATTTATAG

Protein sequence

>MsG0580029190.01.T01

MQLISAYKTDNPEPFIDQRVNRYGSIFTTHVFGEPTVFSADPETNRFILMNEGKLFECSYPGSISNLLGKHSLLLMKGSLHKRMHSLTMSFANSSIIKDHLLLDIDRLIRLNLDSWSDRVLLMEEAKKITFELTVKQLMSFDPGEWTETLRKEYVLVIEGFFTLPLPLLSSTYRRAIKEEHDQIRAKKSCQNVPLEWTDYKSMQFTQCVVNETLRMANIISGIFRRAMTDINIKGYTIPKGWKVFASFRAVHLNPDHFKDARSFNPWRWQVAHSLISYL*