AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029326.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029326.01.T01 MTR_5g082610 82.167 443 10 3 37 453 24 423 0.0 721
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029326.01.T01 AT5G16690 41.009 456 193 7 29 453 22 432 3.82e-101 318
MsG0580029326.01.T01 AT5G16690 41.009 456 193 7 29 453 22 432 7.22e-101 318

Find 0 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCAATAATATACAAAAAT+GGG - Chr5:95292261-95292280 MsG0580029326.01.T01:intron 10.0%
!! TATTCAATAATATACAAAAA+TGG - Chr5:95292260-95292279 MsG0580029326.01.T01:intron 10.0%
!!! ATTTTATATAGAGATATAAA+TGG + Chr5:95292523-95292542 None:intergenic 10.0%
!! AATTTAAACATTTCAACATA+TGG - Chr5:95293883-95293902 MsG0580029326.01.T01:CDS 15.0%
!! ATTCGATAAATTCTAATATA+CGG + Chr5:95292193-95292212 None:intergenic 15.0%
!! TAATGTATAATATAATGGTA+TGG - Chr5:95293145-95293164 MsG0580029326.01.T01:CDS 15.0%
!! TCATTAAACAATAGTAAAAA+AGG + Chr5:95294231-95294250 None:intergenic 15.0%
!!! TTTTACTATTGTTTAATGAT+TGG - Chr5:95294232-95294251 MsG0580029326.01.T01:intron 15.0%
!!! TTTTAGCACATTATATAATA+TGG - Chr5:95294626-95294645 MsG0580029326.01.T01:intron 15.0%
!! AAAAATTGAATCCACTATTA+AGG - Chr5:95292120-95292139 MsG0580029326.01.T01:intron 20.0%
!! AAAATTTATCAAGTTCCATT+GGG - Chr5:95291811-95291830 MsG0580029326.01.T01:intron 20.0%
!! ACCAAAGAAATAAACAAATA+AGG + Chr5:95291895-95291914 None:intergenic 20.0%
!! ACTCCAAATATTAAGAATAT+TGG + Chr5:95293264-95293283 None:intergenic 20.0%
!! ATAGAAACATATAATAGCAT+TGG + Chr5:95294139-95294158 None:intergenic 20.0%
!! ATTCGAATTAAGATGATATA+GGG - Chr5:95291782-95291801 MsG0580029326.01.T01:intron 20.0%
!! ATTTAATATTGGTCATAAAG+TGG - Chr5:95293425-95293444 MsG0580029326.01.T01:intron 20.0%
!! CTAGATTAATTATAACCAAA+AGG + Chr5:95294407-95294426 None:intergenic 20.0%
!! TAATGTGCTAAAAGTTAATT+TGG + Chr5:95294619-95294638 None:intergenic 20.0%
!! TATTCGAATTAAGATGATAT+AGG - Chr5:95291781-95291800 MsG0580029326.01.T01:intron 20.0%
!! TCATCAATTGATAAAAGAAA+TGG + Chr5:95294583-95294602 None:intergenic 20.0%
!! TTATCTATTACTTATGACTT+GGG + Chr5:95294026-95294045 None:intergenic 20.0%
!! TTTATCTATTACTTATGACT+TGG + Chr5:95294027-95294046 None:intergenic 20.0%
!! TTTATGACCAATATTAAATG+TGG + Chr5:95293424-95293443 None:intergenic 20.0%
!!! ATAGTGTTTGAATGATATTT+TGG + Chr5:95294077-95294096 None:intergenic 20.0%
!!! CTTTTGGTTATAATTAATCT+AGG - Chr5:95294405-95294424 MsG0580029326.01.T01:CDS 20.0%
!!! TAGTGTTTGAATGATATTTT+GGG + Chr5:95294076-95294095 None:intergenic 20.0%
!!! TCCTTATTTGTTTATTTCTT+TGG - Chr5:95291891-95291910 MsG0580029326.01.T01:intron 20.0%
!!! TGTTTAATGATTGGTTAAAA+TGG - Chr5:95294241-95294260 MsG0580029326.01.T01:intron 20.0%
!!! TTGAAGCTTTTGATATTATT+TGG - Chr5:95292095-95292114 MsG0580029326.01.T01:intron 20.0%
!!! TTTCTTTTATCAATTGATGA+TGG - Chr5:95294583-95294602 MsG0580029326.01.T01:intron 20.0%
!!! TTTTATTTCCATGATTCATT+GGG - Chr5:95294108-95294127 MsG0580029326.01.T01:CDS 20.0%
! ATAATGGCAATGATATGAAT+TGG - Chr5:95293190-95293209 MsG0580029326.01.T01:CDS 25.0%
! ATAGAGAAATGAATAAGCAA+AGG + Chr5:95292802-95292821 None:intergenic 25.0%
! ATATTGAACAAGAAAAGTTC+AGG + Chr5:95294185-95294204 None:intergenic 25.0%
! ATCATTCAAACACTATTGAT+TGG - Chr5:95294081-95294100 MsG0580029326.01.T01:intron 25.0%
! CAAAATTTATCAAGTTCCAT+TGG - Chr5:95291810-95291829 MsG0580029326.01.T01:intron 25.0%
! CAATAGTAAAAAAGGAATGA+TGG + Chr5:95294223-95294242 None:intergenic 25.0%
! CATATTTGAAGAGCAAATTA+AGG + Chr5:95293744-95293763 None:intergenic 25.0%
! GAAAGTGAGTAAAATATTAG+AGG + Chr5:95293722-95293741 None:intergenic 25.0%
! GATTAATTATAACCAAAAGG+TGG + Chr5:95294404-95294423 None:intergenic 25.0%
! GTGCCAATATTCTTAATATT+TGG - Chr5:95293258-95293277 MsG0580029326.01.T01:intron 25.0%
! TAATTAATCTAGGAATGACA+TGG - Chr5:95294415-95294434 MsG0580029326.01.T01:CDS 25.0%
! TATCTATTACTTATGACTTG+GGG + Chr5:95294025-95294044 None:intergenic 25.0%
! TATTGAACAAGAAAAGTTCA+GGG + Chr5:95294184-95294203 None:intergenic 25.0%
! TATTTAGATGACCTTAATAG+TGG + Chr5:95292134-95292153 None:intergenic 25.0%
! TTACAAGCATAAACATAGAA+GGG + Chr5:95293347-95293366 None:intergenic 25.0%
! TTCGAATTAAGATGATATAG+GGG - Chr5:95291783-95291802 MsG0580029326.01.T01:intron 25.0%
!! ATTACACTTAACAGATTTTC+AGG - Chr5:95294340-95294359 MsG0580029326.01.T01:intron 25.0%
!! TAATATACAAAAATGGGTTC+AGG - Chr5:95292267-95292286 MsG0580029326.01.T01:intron 25.0%
!!! ATCTTTTATAAGAGCTTTGA+AGG - Chr5:95293494-95293513 MsG0580029326.01.T01:intron 25.0%
!!! CATTTTTTGTAACAGTGAAT+GGG - Chr5:95293227-95293246 MsG0580029326.01.T01:CDS 25.0%
!!! CTTTTATTTCCATGATTCAT+TGG - Chr5:95294107-95294126 MsG0580029326.01.T01:CDS 25.0%
!!! TCATCTTTTGATTAGTGTTA+AGG - Chr5:95293916-95293935 MsG0580029326.01.T01:CDS 25.0%
!!! TTTTGAGATTGAACTATGAT+TGG - Chr5:95292542-95292561 MsG0580029326.01.T01:intron 25.0%
AAAAATGTGAAAACGCATAC+TGG + Chr5:95292406-95292425 None:intergenic 30.0%
AAACATGCAGTACAATATCT+TGG - Chr5:95292468-95292487 MsG0580029326.01.T01:intron 30.0%
AAGGAGGTAAAATCAAACAA+AGG + Chr5:95291844-95291863 None:intergenic 30.0%
AATACCACTCTTTCTATTGT+AGG - Chr5:95292210-95292229 MsG0580029326.01.T01:CDS 30.0%
AATTACTTCATCAATCAGGA+TGG - Chr5:95293462-95293481 MsG0580029326.01.T01:intron 30.0%
ACAAGTGTTAGTACTAAGAA+GGG - Chr5:95293947-95293966 MsG0580029326.01.T01:intron 30.0%
ATAATGACATTTGAAGAGCT+TGG - Chr5:95292591-95292610 MsG0580029326.01.T01:intron 30.0%
ATATTGTACTGCATGTTTGT+AGG + Chr5:95292466-95292485 None:intergenic 30.0%
ATCTGCTTCACACATATATA+GGG - Chr5:95293764-95293783 MsG0580029326.01.T01:CDS 30.0%
ATGCTTATTACACTTCTCTA+TGG - Chr5:95293646-95293665 MsG0580029326.01.T01:CDS 30.0%
ATGTATTTCAACAAAGTCTC+AGG + Chr5:95294294-95294313 None:intergenic 30.0%
ATTACTTCATCAATCAGGAT+GGG - Chr5:95293463-95293482 MsG0580029326.01.T01:intron 30.0%
CAAATGAGGTTACAATATAC+AGG + Chr5:95293003-95293022 None:intergenic 30.0%
CAATGTAAGTTACATGACAT+GGG + Chr5:95292163-95292182 None:intergenic 30.0%
CATTGCACCACATTTAATAT+TGG - Chr5:95293414-95293433 MsG0580029326.01.T01:intron 30.0%
CCATTCACTGTTACAAAAAA+TGG + Chr5:95293229-95293248 None:intergenic 30.0%
CTACCTGAAAGATAAGAAAA+CGG + Chr5:95293625-95293644 None:intergenic 30.0%
GACACTATCAATGAATTCAT+AGG + Chr5:95292436-95292455 None:intergenic 30.0%
GAGAAATTACTTCATCAATC+AGG - Chr5:95293458-95293477 MsG0580029326.01.T01:intron 30.0%
GATGCAAGTTTACTTAAAAG+AGG - Chr5:95294762-95294781 MsG0580029326.01.T01:intron 30.0%
GTTACAAGCATAAACATAGA+AGG + Chr5:95293348-95293367 None:intergenic 30.0%
TACAAGTGTTAGTACTAAGA+AGG - Chr5:95293946-95293965 MsG0580029326.01.T01:intron 30.0%
TACCTGAAAGATAAGAAAAC+GGG + Chr5:95293624-95293643 None:intergenic 30.0%
TGATGGAAAAATGTTTCTTG+GGG + Chr5:95293304-95293323 None:intergenic 30.0%
TTCTAACTAATACTACTCCT+GGG - Chr5:95292355-95292374 MsG0580029326.01.T01:intron 30.0%
! AGTTCTGATCGTTAATGATT+TGG - Chr5:95292899-95292918 MsG0580029326.01.T01:intron 30.0%
! ATGGAGTTTTCGTTGAAAAA+TGG - Chr5:95292660-95292679 MsG0580029326.01.T01:intron 30.0%
! GTGATGGAAAAATGTTTCTT+GGG + Chr5:95293305-95293324 None:intergenic 30.0%
! TGATCGTTAATGATTTGGAA+AGG - Chr5:95292904-95292923 MsG0580029326.01.T01:intron 30.0%
! TGATTGGTTAAAATGGTTTC+AGG - Chr5:95294248-95294267 MsG0580029326.01.T01:intron 30.0%
! TGTGATGGAAAAATGTTTCT+TGG + Chr5:95293306-95293325 None:intergenic 30.0%
!! TCGACTCTAAAACTGAATAA+AGG - Chr5:95294661-95294680 MsG0580029326.01.T01:intron 30.0%
!!! CATGTAACTTACATTGGTTT+TGG - Chr5:95292167-95292186 MsG0580029326.01.T01:intron 30.0%
!!! CCATTTTTTGTAACAGTGAA+TGG - Chr5:95293226-95293245 MsG0580029326.01.T01:CDS 30.0%
AAACGGGCATGTAAAATACT+AGG + Chr5:95293608-95293627 None:intergenic 35.0%
AAATTCTGCTAGTAACAGTG+CGG - Chr5:95291697-95291716 MsG0580029326.01.T01:intron 35.0%
AACCTTTGAGTCTCATACAA+GGG - Chr5:95293669-95293688 MsG0580029326.01.T01:CDS 35.0%
AAGATGCACAGATACAAATG+AGG + Chr5:95293017-95293036 None:intergenic 35.0%
AATTTGACCGATGAAAACAG+AGG + Chr5:95294560-95294579 None:intergenic 35.0%
ATATATCCTGTCACTGTCTT+AGG + Chr5:95293583-95293602 None:intergenic 35.0%
ATATATCTGCCTTAGCATCA+TGG - Chr5:95292844-95292863 MsG0580029326.01.T01:CDS 35.0%
CACTGATAAACACACTAATG+CGG + Chr5:95291640-95291659 None:intergenic 35.0%
CCAATGTAAGTTACATGACA+TGG + Chr5:95292164-95292183 None:intergenic 35.0%
CCATGTCATGTAACTTACAT+TGG - Chr5:95292161-95292180 MsG0580029326.01.T01:intron 35.0%
CTTCAATACTACTAGATTGG+TGG - Chr5:95292294-95292313 MsG0580029326.01.T01:intron 35.0%
CTTTATTGCGAGAGTTTCTA+GGG - Chr5:95292703-95292722 MsG0580029326.01.T01:intron 35.0%
GATCTGCTTCACACATATAT+AGG - Chr5:95293763-95293782 MsG0580029326.01.T01:CDS 35.0%
GCATTCTATTTGTAGTAGCA+AGG + Chr5:95291863-95291882 None:intergenic 35.0%
GCTTTATGTAGCACAAAGAA+TGG + Chr5:95291926-95291945 None:intergenic 35.0%
GGAGTAGTATTAGTTAGAAC+AGG + Chr5:95292354-95292373 None:intergenic 35.0%
GTGCTTCAATACTACTAGAT+TGG - Chr5:95292291-95292310 MsG0580029326.01.T01:intron 35.0%
GTTCTAACTAATACTACTCC+TGG - Chr5:95292354-95292373 MsG0580029326.01.T01:intron 35.0%
TCATTAACGATCAGAACTAG+TGG + Chr5:95292897-95292916 None:intergenic 35.0%
TCGTTGAAAAATGGAATTGC+TGG - Chr5:95292669-95292688 MsG0580029326.01.T01:intron 35.0%
TCTGCTTCACACATATATAG+GGG - Chr5:95293765-95293784 MsG0580029326.01.T01:CDS 35.0%
TGGTATTGTACTCTAGTATC+AGG - Chr5:95292488-95292507 MsG0580029326.01.T01:intron 35.0%
TGGTTAAAATGGTTTCAGGA+GGG - Chr5:95294252-95294271 MsG0580029326.01.T01:intron 35.0%
TTCTATTTGTAGTAGCAAGG+AGG + Chr5:95291860-95291879 None:intergenic 35.0%
TTCTCTATACCATGATGCTA+AGG + Chr5:95292856-95292875 None:intergenic 35.0%
TTGGTTAAAATGGTTTCAGG+AGG - Chr5:95294251-95294270 MsG0580029326.01.T01:intron 35.0%
! ACTGTGGTTCTGTAAGATTT+GGG - Chr5:95294506-95294525 MsG0580029326.01.T01:CDS 35.0%
! ATAACATTGAGTCCACCTTT+TGG - Chr5:95294389-95294408 MsG0580029326.01.T01:CDS 35.0%
! CTGTGCATCTTGAATGTTTT+TGG - Chr5:95293026-95293045 MsG0580029326.01.T01:CDS 35.0%
! GGTATGGTATTTTTCTGCAA+AGG - Chr5:95293161-95293180 MsG0580029326.01.T01:CDS 35.0%
! GTATTTTTCTGCAAAGGCAA+AGG - Chr5:95293167-95293186 MsG0580029326.01.T01:CDS 35.0%
! TACTCATCCTCTGTTTTCAT+CGG - Chr5:95294550-95294569 MsG0580029326.01.T01:CDS 35.0%
!! AACAAAGGCTTTAAACCCAA+TGG + Chr5:95291829-95291848 None:intergenic 35.0%
!! AATGATTTGGAAAGGTGTTG+TGG - Chr5:95292912-95292931 MsG0580029326.01.T01:intron 35.0%
!! TAACAGTGAATGGGTTATCA+AGG - Chr5:95293236-95293255 MsG0580029326.01.T01:CDS 35.0%
AAGAATGGATGCAATTGTCG+AGG - Chr5:95293377-95293396 MsG0580029326.01.T01:intron 40.0%
ACGTCCTACAATAGAAAGAG+TGG + Chr5:95292217-95292236 None:intergenic 40.0%
AGGAAAGATAGAACATCAGC+AGG - Chr5:95291956-95291975 MsG0580029326.01.T01:intron 40.0%
ATTGCATCCATTCTTTCAGC+TGG + Chr5:95293372-95293391 None:intergenic 40.0%
CCAACTGAAGAAAACTAGAC+TGG + Chr5:95293832-95293851 None:intergenic 40.0%
CTAGGGAATTCTTTCGATGT+GGG - Chr5:95292720-95292739 MsG0580029326.01.T01:intron 40.0%
CTGAAACATACCTCAACATC+AGG + Chr5:95292959-95292978 None:intergenic 40.0%
CTGAGTTTATCCTGATGTTG+AGG - Chr5:95292946-95292965 MsG0580029326.01.T01:intron 40.0%
GAACCTTTGAGTCTCATACA+AGG - Chr5:95293668-95293687 MsG0580029326.01.T01:CDS 40.0%
GAGAATTCTCGTTGAAGATC+AGG - Chr5:95293691-95293710 MsG0580029326.01.T01:CDS 40.0%
GAGATTGAACTATGATTGGC+AGG - Chr5:95292546-95292565 MsG0580029326.01.T01:intron 40.0%
GATGTTCTATCTTTCCTCCT+AGG + Chr5:95291953-95291972 None:intergenic 40.0%
GTACTGCATGTTTGTAGGAT+TGG + Chr5:95292461-95292480 None:intergenic 40.0%
GTGTTGTGAATTGCAAATCG+CGG - Chr5:95291657-95291676 MsG0580029326.01.T01:CDS 40.0%
GTTATAGAACCACACCAAGT+TGG + Chr5:95293069-95293088 None:intergenic 40.0%
TACATAAAGCTTCACCTAGG+AGG - Chr5:95291936-95291955 MsG0580029326.01.T01:intron 40.0%
TCTAGGGAATTCTTTCGATG+TGG - Chr5:95292719-95292738 MsG0580029326.01.T01:intron 40.0%
TCTGCAAAGGCAAAGGATAA+TGG - Chr5:95293174-95293193 MsG0580029326.01.T01:CDS 40.0%
TCTTGGTAAACTCAGTTTCC+AGG + Chr5:95294854-95294873 None:intergenic 40.0%
TGAATAAGCAAAGGAGACAG+TGG + Chr5:95292793-95292812 None:intergenic 40.0%
TGACACTTCGATTAGCATCT+TGG + Chr5:95294871-95294890 None:intergenic 40.0%
TGCTACATAAAGCTTCACCT+AGG - Chr5:95291933-95291952 MsG0580029326.01.T01:intron 40.0%
TGGTTGAACCCAATGAATCA+TGG + Chr5:95294119-95294138 None:intergenic 40.0%
TGTAACACCAGCTGAAAGAA+TGG - Chr5:95293362-95293381 MsG0580029326.01.T01:intron 40.0%
TGTGGCTATGCTTTCATCAA+TGG - Chr5:95292641-95292660 MsG0580029326.01.T01:intron 40.0%
! AAACACTCAAGAGCATGTGA+TGG + Chr5:95293321-95293340 None:intergenic 40.0%
! CACTGTGGTTCTGTAAGATT+TGG - Chr5:95294505-95294524 MsG0580029326.01.T01:CDS 40.0%
! GCTTTATTGCGAGAGTTTCT+AGG - Chr5:95292702-95292721 MsG0580029326.01.T01:intron 40.0%
! GGCATTTTCTTGAAATCCCA+TGG - Chr5:95292612-95292631 MsG0580029326.01.T01:intron 40.0%
! TGAAGAAAACTAGACTGGCT+TGG + Chr5:95293827-95293846 None:intergenic 40.0%
! TGCCCGTTTTCTTATCTTTC+AGG - Chr5:95293619-95293638 MsG0580029326.01.T01:CDS 40.0%
! TTTAGAGTCGACTACGTGAA+TGG + Chr5:95294652-95294671 None:intergenic 40.0%
!! GAAGAAAACTAGACTGGCTT+GGG + Chr5:95293826-95293845 None:intergenic 40.0%
!! TTCTAAAGCTTCCACCAACT+TGG - Chr5:95293052-95293071 MsG0580029326.01.T01:CDS 40.0%
!!! CCAGTCTAGTTTTCTTCAGT+TGG - Chr5:95293829-95293848 MsG0580029326.01.T01:CDS 40.0%
AGATAGAACATCAGCAGGAC+AGG - Chr5:95291961-95291980 MsG0580029326.01.T01:intron 45.0%
ATGAACTTCCATCGCATGCA+AGG - Chr5:95294316-95294335 MsG0580029326.01.T01:intron 45.0%
CATAGACCTAAGACAGTGAC+AGG - Chr5:95293574-95293593 MsG0580029326.01.T01:CDS 45.0%
CATAGCCACATGACATCCAT+GGG + Chr5:95292631-95292650 None:intergenic 45.0%
CTAGCATTGCTGTAGCAACT+CGG - Chr5:95292322-95292341 MsG0580029326.01.T01:intron 45.0%
CTCCCTTGTATGAGACTCAA+AGG + Chr5:95293674-95293693 None:intergenic 45.0%
CTGCATGTTTGTAGGATTGG+TGG + Chr5:95292458-95292477 None:intergenic 45.0%
GAAATCCCATGGATGTCATG+TGG - Chr5:95292623-95292642 MsG0580029326.01.T01:intron 45.0%
GATAGAACATCAGCAGGACA+GGG - Chr5:95291962-95291981 MsG0580029326.01.T01:intron 45.0%
GCTAAGGCAGATATATCAGC+TGG + Chr5:95292840-95292859 None:intergenic 45.0%
GGCTGAAGGTTTGTCAGAAT+TGG - Chr5:95294460-95294479 MsG0580029326.01.T01:CDS 45.0%
GTGTAATACCTTGCATGCGA+TGG + Chr5:95294327-95294346 None:intergenic 45.0%
TGGTAAACTCAGTTTCCAGG+AGG + Chr5:95294851-95294870 None:intergenic 45.0%
TGGTGACAGTGCAGAAACTA+TGG - Chr5:95294480-95294499 MsG0580029326.01.T01:CDS 45.0%
TGGTTTCAGGAGGGAAAATC+TGG - Chr5:95294261-95294280 MsG0580029326.01.T01:intron 45.0%
! ATAGAACCACACCAAGTTGG+TGG + Chr5:95293066-95293085 None:intergenic 45.0%
! ATTTGGAGTTGCAACGACAG+TGG - Chr5:95293275-95293294 MsG0580029326.01.T01:intron 45.0%
! TCCTGTTTCTTTGCACTCTG+TGG + Chr5:95292025-95292044 None:intergenic 45.0%
!!! TATTTTAATGTATAATATAA+TGG - Chr5:95293140-95293159 MsG0580029326.01.T01:CDS 5.0%
AAGGATGCAACCCACACATC+AGG + Chr5:95294797-95294816 None:intergenic 50.0%
AATGCGCTGTACAACTTCCC+AGG + Chr5:95292375-95292394 None:intergenic 50.0%
CGAGTTGCTACAGCAATGCT+AGG + Chr5:95292324-95292343 None:intergenic 50.0%
CTGTTATCCCGCCTGTAAGA+AGG + Chr5:95294816-95294835 None:intergenic 50.0%
GACGCAGAAAAGTCGCATTG+CGG - Chr5:95293996-95294015 MsG0580029326.01.T01:intron 50.0%
GCATAGCCACATGACATCCA+TGG + Chr5:95292632-95292651 None:intergenic 50.0%
GCCACAGAGTGCAAAGAAAC+AGG - Chr5:95292021-95292040 MsG0580029326.01.T01:CDS 50.0%
GGTTGCATCCTTCTTACAGG+CGG - Chr5:95294805-95294824 MsG0580029326.01.T01:CDS 50.0%
GTTGCATCCTTCTTACAGGC+GGG - Chr5:95294806-95294825 MsG0580029326.01.T01:CDS 50.0%
TGACCAGACTAACGAGAGCA+TGG - Chr5:95294439-95294458 MsG0580029326.01.T01:CDS 50.0%
TTTGCACTCTGTGGCAATCG+AGG + Chr5:95292016-95292035 None:intergenic 50.0%
! AAGCTTCCACCAACTTGGTG+TGG - Chr5:95293057-95293076 MsG0580029326.01.T01:CDS 50.0%
! ACTAACGAGAGCATGGCTGA+AGG - Chr5:95294446-95294465 MsG0580029326.01.T01:CDS 50.0%
! GTGGGTTGCATCCTTCTTAC+AGG - Chr5:95294802-95294821 MsG0580029326.01.T01:CDS 50.0%
! TTCTCCATGGCAGAGGCTTT+TGG - Chr5:95291614-95291633 MsG0580029326.01.T01:CDS 50.0%
!! GCAGAAACTATGGAGCACTG+TGG - Chr5:95294490-95294509 MsG0580029326.01.T01:CDS 50.0%
AACTCAGTTTCCAGGAGGCC+TGG + Chr5:95294846-95294865 None:intergenic 55.0%
ACTCAGTTTCCAGGAGGCCT+GGG + Chr5:95294845-95294864 None:intergenic 55.0%
CAGAGAACTAGCCACTCCAG+CGG + Chr5:95291728-95291747 None:intergenic 55.0%
CAGCCATGCTCTCGTTAGTC+TGG + Chr5:95294445-95294464 None:intergenic 55.0%
GATGCAACCCACACATCAGG+TGG + Chr5:95294794-95294813 None:intergenic 55.0%
GCACATGCCACCTGATGTGT+GGG - Chr5:95294784-95294803 MsG0580029326.01.T01:intron 55.0%
! CGACTTTTCTGCGTCGCACT+GGG + Chr5:95293991-95294010 None:intergenic 55.0%
! CGGGATAACAGAGTGTTCCC+AGG - Chr5:95294825-95294844 MsG0580029326.01.T01:CDS 55.0%
! GACTTTTCTGCGTCGCACTG+GGG + Chr5:95293990-95294009 None:intergenic 55.0%
GGCACATGCCACCTGATGTG+TGG - Chr5:95294783-95294802 MsG0580029326.01.T01:intron 60.0%
TAACAGTGCGGTAGCACCGC+TGG - Chr5:95291709-95291728 MsG0580029326.01.T01:intron 60.0%
! GCGACTTTTCTGCGTCGCAC+TGG + Chr5:95293992-95294011 None:intergenic 60.0%
GCGGCCAAAAGCCTCTGCCA+TGG + Chr5:95291621-95291640 None:intergenic 65.0%
! CAGAGTGTTCCCAGGCCTCC+TGG - Chr5:95294833-95294852 MsG0580029326.01.T01:CDS 65.0%
GTGCGGTAGCACCGCTGGAG+TGG - Chr5:95291714-95291733 MsG0580029326.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 95291611 95294896 95291611 ID=MsG0580029326.01;
Chr5 mRNA 95291611 95294896 95291611 ID=MsG0580029326.01.T01;Parent=MsG0580029326.01
Chr5 CDS 95291611 95291683 95291611 ID=MsG0580029326.01.T01.cds;Parent=MsG0580029326.01.T01
Chr5 CDS 95291991 95292080 95291991 ID=MsG0580029326.01.T01.cds;Parent=MsG0580029326.01.T01
Chr5 CDS 95292170 95292237 95292170 ID=MsG0580029326.01.T01.cds;Parent=MsG0580029326.01.T01
Chr5 CDS 95292795 95292866 95292795 ID=MsG0580029326.01.T01.cds;Parent=MsG0580029326.01.T01
Chr5 CDS 95292962 95293265 95292962 ID=MsG0580029326.01.T01.cds;Parent=MsG0580029326.01.T01
Chr5 CDS 95293540 95293939 95293540 ID=MsG0580029326.01.T01.cds;Parent=MsG0580029326.01.T01
Chr5 CDS 95294102 95294198 95294102 ID=MsG0580029326.01.T01.cds;Parent=MsG0580029326.01.T01
Chr5 CDS 95294366 95294584 95294366 ID=MsG0580029326.01.T01.cds;Parent=MsG0580029326.01.T01
Chr5 CDS 95294789 95294896 95294789 ID=MsG0580029326.01.T01.cds;Parent=MsG0580029326.01.T01
Gene Sequence

>MsG0580029326.01.T01

ATGTTCTCCATGGCAGAGGCTTTTGGCCGCATTAGTGTGTTTATCAGTGTTGTGAATTGCAAATCGCGGAAAATAGATGTTTGTTCAAATTCTGCTAGTAACAGTGCGCCATTCTTTGTGCTACATAAAGCTTCACCTAGGAGGAAAGATAGAACATCAGCAGGACAGGGAAAATCTCGCAAAAGAAATGAGCTATCTCCTCGATTGCCACAGAGTGCAAAGAAACAGGAAGAAAGTACAGATGAAGAATGTGATCGCTATTTGTGTCAGCAACAGCAGATTGAAGCTTTTGATATTATTTGGACAAAAATTGAATCCACTATTAAGATTGGTGGAGAACCTAGCATTGCTGTAGCAACTCGGTCTTTTCCTGTTCTAACTAATACTACTCCTGGGAAGTTGTACAGCGCATTAGTTGTTACCAGAAACATAGAGTTTGTCGATGACATAATGACATTTGAAGAGCTTGGCATTTTCTTGAAATCCCATGGATGTCATGTGGCTATGCTTTCATCAATGGAGTTTTCGTTGAAAAATGGAATTGCTGGTTGCTTGAAAGCTTTATTGCGAGAGTTTCTAGGGAATTCTTTCGATGTGGGTGCTTCTATGAACTTATTATGTATAATTAAATTAAATCTATCTACTGCCACTGTCTCCTTTGCTTATTCATTTCTCTATGTCGTTGTTAATCAGCCAGCTGATATATCTGCCTTAGCATCATGGTATAGAGAACAAGAAAACTACAATAAACCACTAGTTCTGATCGTTAATGATTTGGAAAGGTGTTGTGGATCAGTCTTAACTGAGTTTATCCTGATGTTGAGTGAATGGGTTATCAAGGTGCCAATATTCTTAATATTTGGAGTTGCAACGACAGTGGATGCCCCAAGAAACATTTTTCCATCACATGCTCTTGAGTGTTTCTGCCCTTCTATGTTTATGCTTGTAACACCAGCTGAAAGAATGGATGCAATTGTCGAGGCTATTCTTGTAAAACATTGCACCACATTTAATATTGGTCATAAAGTGGCACAGTTATTGAGAAATTACTTCATCAATCAGGATGGGACAGTAACATCTTTTATAAGAGCTTTGAAGGTTAATGATGCAATTTTTGAGTTACTGACTGTAGCATGCTTATTACACTTCTCTATGGAACCTTTGAGTCTCATACAAGGGAGAATTCTCGTTGAAGATCAGGAGGGAAAATCTGGATTATCACCTGAGACTTTGTTGAAATACATGCATGAACTTCCATCGCATGCAAGGAATGACATGGTTGACCAGACTAACGAGAGCATGGCTGAAGGTTTGTCAGAATTGGTGACAGTGCAGAAACTATGGAGCACTGTGGTTCTGCGGGATAACAGAGTGTTCCCAGGCCTCCTGGAAACTGAGTTTACCAAGATGCTAATCGAAGTGTCAAACTAA
Protein sequence

>MsG0580029326.01.T01

MFSMAEAFGRISVFISVVNCKSRKIDVCSNSASNSAPFFVLHKASPRRKDRTSAGQGKSRKRNELSPRLPQSAKKQEESTDEECDRYLCQQQQIEAFDIIWTKIESTIKIGGEPSIAVATRSFPVLTNTTPGKLYSALVVTRNIEFVDDIMTFEELGIFLKSHGCHVAMLSSMEFSLKNGIAGCLKALLREFLGNSFDVGASMNLLCIIKLNLSTATVSFAYSFLYVVVNQPADISALASWYREQENYNKPLVLIVNDLERCCGSVLTEFILMLSEWVIKVPIFLIFGVATTVDAPRNIFPSHALECFCPSMFMLVTPAERMDAIVEAILVKHCTTFNIGHKVAQLLRNYFINQDGTVTSFIRALKVNDAIFELLTVACLLHFSMEPLSLIQGRILVEDQEGKSGLSPETLLKYMHELPSHARNDMVDQTNESMAEGLSELVTVQKLWSTVVLRDNRVFPGLLETEFTKMLIEVSN*