Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029443.01.T01 | XP_024640165.1 | 87.382 | 317 | 10 | 2 | 1 | 287 | 51 | 367 | 0 | 549 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029443.01.T01 | Q6UD73 | 71.472 | 326 | 53 | 6 | 1 | 287 | 51 | 375 | 1.16E-155 | 451 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0580029443.01 | MsG0580029445.01 | 0.813117 | 3.010492e-51 | 1.948729e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029443.01.T01 | MTR_5g086310 | 87.342 | 316 | 10 | 2 | 1 | 286 | 1 | 316 | 0.0 | 546 |
| MsG0580029443.01.T01 | MTR_5g086130 | 71.914 | 324 | 53 | 5 | 1 | 287 | 51 | 373 | 1.52e-158 | 455 |
| MsG0580029443.01.T01 | MTR_5g086130 | 71.472 | 326 | 53 | 6 | 1 | 287 | 51 | 375 | 1.13e-156 | 451 |
| MsG0580029443.01.T01 | MTR_5g086120 | 58.991 | 317 | 93 | 5 | 1 | 287 | 51 | 360 | 1.32e-120 | 358 |
| MsG0580029443.01.T01 | MTR_5g086030 | 49.394 | 330 | 118 | 5 | 1 | 287 | 70 | 393 | 1.23e-99 | 305 |
| MsG0580029443.01.T01 | MTR_3g080050 | 48.544 | 309 | 122 | 5 | 15 | 287 | 68 | 375 | 6.85e-96 | 295 |
| MsG0580029443.01.T01 | MTR_5g086090 | 48.889 | 315 | 125 | 6 | 1 | 287 | 53 | 359 | 2.69e-93 | 288 |
| MsG0580029443.01.T01 | MTR_5g086540 | 49.826 | 287 | 135 | 3 | 1 | 287 | 50 | 327 | 1.55e-83 | 262 |
| MsG0580029443.01.T01 | MTR_2g024290 | 44.654 | 318 | 127 | 6 | 15 | 287 | 58 | 371 | 1.07e-81 | 256 |
| MsG0580029443.01.T01 | MTR_2g024290 | 44.654 | 318 | 127 | 6 | 15 | 287 | 58 | 371 | 4.30e-81 | 256 |
| MsG0580029443.01.T01 | MTR_5g086040 | 45.833 | 312 | 131 | 4 | 1 | 287 | 85 | 383 | 1.25e-79 | 251 |
| MsG0580029443.01.T01 | MTR_5g086040 | 45.833 | 312 | 131 | 4 | 1 | 287 | 47 | 345 | 3.41e-79 | 251 |
| MsG0580029443.01.T01 | MTR_5g086110 | 49.143 | 175 | 86 | 2 | 1 | 175 | 53 | 224 | 5.76e-56 | 183 |
| MsG0580029443.01.T01 | MTR_5g086050 | 50.400 | 125 | 49 | 2 | 4 | 128 | 39 | 150 | 1.28e-38 | 133 |
| MsG0580029443.01.T01 | MTR_5g078600 | 41.810 | 232 | 54 | 9 | 62 | 281 | 145 | 307 | 8.54e-37 | 133 |
| MsG0580029443.01.T01 | MTR_5g086080 | 42.424 | 198 | 59 | 4 | 141 | 287 | 6 | 199 | 3.71e-36 | 134 |
| MsG0580029443.01.T01 | MTR_5g086660 | 49.524 | 105 | 35 | 2 | 91 | 195 | 24 | 110 | 1.16e-24 | 97.4 |
| MsG0580029443.01.T01 | MTR_5g086040 | 68.354 | 79 | 25 | 0 | 209 | 287 | 8 | 86 | 1.10e-21 | 93.2 |
| MsG0580029443.01.T01 | MTR_5g086040 | 68.354 | 79 | 25 | 0 | 209 | 287 | 115 | 193 | 2.90e-21 | 93.2 |
| MsG0580029443.01.T01 | MTR_7g079350 | 25.602 | 332 | 168 | 11 | 21 | 287 | 102 | 419 | 1.57e-16 | 80.1 |
| MsG0580029443.01.T01 | MTR_7g079320 | 23.669 | 338 | 174 | 11 | 21 | 287 | 88 | 412 | 1.08e-13 | 71.6 |
| MsG0580029443.01.T01 | MTR_5g078590 | 58.065 | 62 | 25 | 1 | 195 | 256 | 79 | 139 | 3.41e-13 | 66.6 |
| MsG0580029443.01.T01 | MTR_5g019040 | 25.078 | 319 | 184 | 11 | 6 | 287 | 61 | 361 | 7.38e-13 | 68.9 |
| MsG0580029443.01.T01 | MTR_4g129010 | 50.000 | 70 | 31 | 2 | 222 | 287 | 30 | 99 | 5.01e-12 | 65.9 |
| MsG0580029443.01.T01 | MTR_5g033490 | 43.939 | 66 | 37 | 0 | 222 | 287 | 297 | 362 | 5.57e-12 | 66.2 |
| MsG0580029443.01.T01 | MTR_2g064940 | 50.000 | 70 | 31 | 2 | 222 | 287 | 31 | 100 | 9.14e-12 | 65.1 |
| MsG0580029443.01.T01 | MTR_7g083500 | 46.667 | 75 | 35 | 2 | 218 | 287 | 64 | 138 | 1.48e-11 | 64.7 |
| MsG0580029443.01.T01 | MTR_8g067630 | 48.052 | 77 | 33 | 3 | 217 | 287 | 272 | 347 | 1.50e-11 | 65.1 |
| MsG0580029443.01.T01 | MTR_8g014500 | 44.286 | 70 | 39 | 0 | 218 | 287 | 341 | 410 | 1.60e-11 | 65.1 |
| MsG0580029443.01.T01 | MTR_8g014500 | 44.286 | 70 | 39 | 0 | 218 | 287 | 341 | 410 | 1.74e-11 | 64.7 |
| MsG0580029443.01.T01 | MTR_8g014500 | 44.286 | 70 | 39 | 0 | 218 | 287 | 341 | 410 | 1.85e-11 | 64.7 |
| MsG0580029443.01.T01 | MTR_4g081655 | 47.143 | 70 | 33 | 2 | 222 | 287 | 528 | 597 | 1.85e-11 | 64.7 |
| MsG0580029443.01.T01 | MTR_3g062590 | 47.143 | 70 | 33 | 2 | 222 | 287 | 610 | 679 | 1.97e-11 | 64.7 |
| MsG0580029443.01.T01 | MTR_4g081640 | 47.143 | 70 | 33 | 2 | 222 | 287 | 456 | 525 | 1.99e-11 | 64.7 |
| MsG0580029443.01.T01 | MTR_4g081655 | 47.143 | 70 | 33 | 2 | 222 | 287 | 493 | 562 | 2.05e-11 | 64.7 |
| MsG0580029443.01.T01 | MTR_8g067930 | 48.052 | 77 | 33 | 3 | 217 | 287 | 324 | 399 | 2.14e-11 | 64.7 |
| MsG0580029443.01.T01 | MTR_8g067735 | 48.052 | 77 | 33 | 3 | 217 | 287 | 343 | 418 | 2.42e-11 | 64.3 |
| MsG0580029443.01.T01 | MTR_8g463990 | 51.429 | 70 | 30 | 2 | 222 | 287 | 32 | 101 | 2.52e-11 | 63.5 |
| MsG0580029443.01.T01 | MTR_4g081655 | 47.143 | 70 | 33 | 2 | 222 | 287 | 528 | 597 | 2.56e-11 | 64.3 |
| MsG0580029443.01.T01 | MTR_2g103950 | 44.286 | 70 | 35 | 2 | 222 | 287 | 28 | 97 | 3.29e-11 | 63.5 |
| MsG0580029443.01.T01 | MTR_8g463990 | 51.429 | 70 | 30 | 2 | 222 | 287 | 32 | 101 | 3.41e-11 | 63.5 |
| MsG0580029443.01.T01 | MTR_4g093110 | 48.611 | 72 | 32 | 2 | 221 | 287 | 330 | 401 | 4.50e-11 | 63.5 |
| MsG0580029443.01.T01 | MTR_1g031780 | 36.634 | 101 | 50 | 3 | 191 | 287 | 19 | 109 | 4.58e-11 | 63.2 |
| MsG0580029443.01.T01 | MTR_2g064930 | 47.143 | 70 | 33 | 1 | 222 | 287 | 34 | 103 | 5.18e-11 | 61.6 |
| MsG0580029443.01.T01 | MTR_1g102190 | 45.070 | 71 | 35 | 2 | 221 | 287 | 34 | 104 | 6.16e-11 | 62.8 |
| MsG0580029443.01.T01 | MTR_7g056510 | 40.426 | 94 | 49 | 3 | 201 | 287 | 473 | 566 | 9.22e-11 | 62.8 |
| MsG0580029443.01.T01 | MTR_7g056510 | 40.426 | 94 | 49 | 3 | 201 | 287 | 483 | 576 | 9.34e-11 | 62.8 |
| MsG0580029443.01.T01 | MTR_7g056510 | 40.426 | 94 | 49 | 3 | 201 | 287 | 483 | 576 | 9.36e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029443.01.T01 | AT3G21630 | 47.923 | 313 | 124 | 5 | 13 | 287 | 64 | 375 | 2.34e-88 | 275 |
| MsG0580029443.01.T01 | AT1G51940 | 43.056 | 72 | 41 | 0 | 216 | 287 | 323 | 394 | 2.23e-12 | 67.4 |
| MsG0580029443.01.T01 | AT1G25390 | 44.286 | 70 | 35 | 2 | 222 | 287 | 279 | 348 | 9.42e-12 | 65.9 |
| MsG0580029443.01.T01 | AT1G25390 | 44.286 | 70 | 35 | 2 | 222 | 287 | 279 | 348 | 9.42e-12 | 65.9 |
| MsG0580029443.01.T01 | AT4G00330 | 47.368 | 76 | 32 | 3 | 220 | 287 | 105 | 180 | 1.72e-11 | 64.7 |
| MsG0580029443.01.T01 | AT4G00330 | 47.368 | 76 | 32 | 3 | 220 | 287 | 105 | 180 | 1.72e-11 | 64.7 |
| MsG0580029443.01.T01 | AT1G70460 | 34.234 | 111 | 65 | 3 | 181 | 287 | 304 | 410 | 2.56e-11 | 64.3 |
| MsG0580029443.01.T01 | AT2G19230 | 47.826 | 69 | 31 | 2 | 222 | 287 | 559 | 625 | 3.08e-11 | 64.3 |
| MsG0580029443.01.T01 | AT2G19230 | 47.826 | 69 | 31 | 2 | 222 | 287 | 560 | 626 | 3.19e-11 | 64.3 |
| MsG0580029443.01.T01 | AT1G65800 | 31.405 | 121 | 74 | 3 | 176 | 287 | 460 | 580 | 3.58e-11 | 63.9 |
| MsG0580029443.01.T01 | AT1G65800 | 31.405 | 121 | 74 | 3 | 176 | 287 | 460 | 580 | 3.59e-11 | 63.9 |
| MsG0580029443.01.T01 | AT1G06840 | 48.571 | 70 | 32 | 2 | 222 | 287 | 613 | 682 | 5.19e-11 | 63.5 |
| MsG0580029443.01.T01 | AT3G26940 | 47.143 | 70 | 33 | 2 | 222 | 287 | 62 | 131 | 6.38e-11 | 62.8 |
| MsG0580029443.01.T01 | AT1G55610 | 34.211 | 114 | 70 | 3 | 178 | 287 | 804 | 916 | 7.95e-11 | 63.2 |
| MsG0580029443.01.T01 | AT1G55610 | 34.211 | 114 | 70 | 3 | 178 | 287 | 804 | 916 | 7.95e-11 | 63.2 |
Find 54 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCAAATTTCAAAAGATTA+TGG | 0.159454 | 5:+97029415 | MsG0580029443.01.T01:CDS |
| TTCAGCTTAGATTATAAAAT+TGG | 0.248786 | 5:+97030498 | MsG0580029443.01.T01:CDS |
| AAAATTGGTCAAGGTGGATT+TGG | 0.263345 | 5:+97030513 | MsG0580029443.01.T01:CDS |
| TACTGTATTTACAGGCATTA+TGG | 0.282164 | 5:+97030422 | MsG0580029443.01.T01:CDS |
| GCCAAATTTCAAAAGATTAT+GGG | 0.301728 | 5:+97029416 | MsG0580029443.01.T01:CDS |
| GGGCATGCTACTGTATTTAC+AGG | 0.363130 | 5:+97030414 | MsG0580029443.01.T01:CDS |
| GTCTACTATGCAGAACTTAG+AGG | 0.364775 | 5:+97030540 | MsG0580029443.01.T01:CDS |
| AGAATTTCTTTGTGAGTTGA+AGG | 0.382445 | 5:+97030760 | MsG0580029443.01.T01:CDS |
| CAAACTTGCATAATAAGAAT+TGG | 0.389245 | 5:-97029293 | None:intergenic |
| GCTGAAATTATTTGTAGCCT+TGG | 0.395379 | 5:-97030481 | None:intergenic |
| AGAGTATACGTACCTCTTCC+TGG | 0.397366 | 5:-97029574 | None:intergenic |
| CCATTCCCATGTGAATGTAT+TGG | 0.399380 | 5:+97029205 | MsG0580029443.01.T01:CDS |
| GTCAATTTCAGCAATGGAAG+TGG | 0.400234 | 5:+97029538 | MsG0580029443.01.T01:CDS |
| GAAGGAAGAGAAAACTAAAC+TGG | 0.402601 | 5:+97030115 | MsG0580029443.01.T01:CDS |
| ATTATGTTCCCTTGTATCCT+AGG | 0.408495 | 5:+97029764 | MsG0580029443.01.T01:CDS |
| TTGATACAGAAATACAATTC+TGG | 0.410096 | 5:+97029514 | MsG0580029443.01.T01:CDS |
| AGTGCAGAGTATGAAACTTC+AGG | 0.423068 | 5:+97030384 | MsG0580029443.01.T01:CDS |
| ACCCTTCATCAAGATTAGAT+TGG | 0.429698 | 5:-97029492 | None:intergenic |
| AACCAATCTAATCTTGATGA+AGG | 0.433652 | 5:+97029490 | MsG0580029443.01.T01:CDS |
| GCCTTAGCAGGTATATGATC+TGG | 0.437237 | 5:-97029355 | None:intergenic |
| ACATTAACCTTAGCCTTAGC+AGG | 0.446826 | 5:-97029367 | None:intergenic |
| TAACAGTCAATTGTTCTTGT+GGG | 0.452066 | 5:+97029389 | MsG0580029443.01.T01:CDS |
| ACATGTTCATCACTTGAATC+TGG | 0.467433 | 5:+97030790 | MsG0580029443.01.T01:CDS |
| TGTATTGGAGGTGAGTTTCT+CGG | 0.474047 | 5:+97029220 | MsG0580029443.01.T01:CDS |
| AGTGGGATAGTGTTCATTCC+AGG | 0.478793 | 5:+97029556 | MsG0580029443.01.T01:CDS |
| GAAAACAGCAATTAAGAAGA+TGG | 0.482819 | 5:+97030721 | MsG0580029443.01.T01:intron |
| GAGTATGAAACTTCAGGATC+CGG | 0.501264 | 5:+97030390 | MsG0580029443.01.T01:CDS |
| GTAACAGTCAATTGTTCTTG+TGG | 0.508382 | 5:+97029388 | MsG0580029443.01.T01:CDS |
| TCTGGTGTCAATTTCAGCAA+TGG | 0.523299 | 5:+97029532 | MsG0580029443.01.T01:CDS |
| AATTACCCACCTAGGATACA+AGG | 0.525006 | 5:-97029773 | None:intergenic |
| TTTGAATACTCAGCAAAAGA+AGG | 0.527912 | 5:+97029250 | MsG0580029443.01.T01:CDS |
| TGGAATGCTGACTCTAGAAA+AGG | 0.532713 | 5:-97029185 | None:intergenic |
| TCCAGATCATATACCTGCTA+AGG | 0.548261 | 5:+97029354 | MsG0580029443.01.T01:CDS |
| TCATATACCTGCTAAGGCTA+AGG | 0.552047 | 5:+97029360 | MsG0580029443.01.T01:CDS |
| CCAATACATTCACATGGGAA+TGG | 0.555440 | 5:-97029205 | None:intergenic |
| GATTATAAAATTGGTCAAGG+TGG | 0.557750 | 5:+97030507 | MsG0580029443.01.T01:CDS |
| TTAGATTATAAAATTGGTCA+AGG | 0.571727 | 5:+97030504 | MsG0580029443.01.T01:CDS |
| GAAGCACTTTCAACTCAAGA+TGG | 0.580185 | 5:+97030140 | MsG0580029443.01.T01:CDS |
| ATAGTGTTCATTCCAGGAAG+AGG | 0.583204 | 5:+97029562 | MsG0580029443.01.T01:CDS |
| ACCAATCTAATCTTGATGAA+GGG | 0.601502 | 5:+97029491 | MsG0580029443.01.T01:CDS |
| TGTTTATTACCTATCCACTC+AGG | 0.601960 | 5:+97029440 | MsG0580029443.01.T01:CDS |
| TTCCCATGTGAATGTATTGG+AGG | 0.602937 | 5:+97029208 | MsG0580029443.01.T01:CDS |
| TACATATCAAGAATTAGCCA+AGG | 0.605737 | 5:+97030464 | MsG0580029443.01.T01:CDS |
| TCAATTTCAGCAATGGAAGT+GGG | 0.612493 | 5:+97029539 | MsG0580029443.01.T01:CDS |
| TATGAAACTTCAGGATCCGG+TGG | 0.615201 | 5:+97030393 | MsG0580029443.01.T01:CDS |
| TCACCTCCAATACATTCACA+TGG | 0.617228 | 5:-97029211 | None:intergenic |
| TGTATTTACAGGCATTATGG+TGG | 0.637777 | 5:+97030425 | MsG0580029443.01.T01:CDS |
| ATTACCCACCTAGGATACAA+GGG | 0.653086 | 5:-97029772 | None:intergenic |
| ATCATCAGTCCTGAGTGGAT+AGG | 0.656455 | 5:-97029449 | None:intergenic |
| CTATGCAGAACTTAGAGGCG+AGG | 0.660123 | 5:+97030545 | MsG0580029443.01.T01:CDS |
| CACCTCCAATACATTCACAT+GGG | 0.661730 | 5:-97029210 | None:intergenic |
| AAATACAGTAGCATGCCCAC+CGG | 0.665881 | 5:-97030409 | None:intergenic |
| ATGAAACTTCAGGATCCGGT+GGG | 0.671578 | 5:+97030394 | MsG0580029443.01.T01:CDS |
| AGAGTATCATCAGTCCTGAG+TGG | 0.693590 | 5:-97029454 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATGTGAAGAAAAAAAA+TGG | - | Chr5:97030667-97030686 | None:intergenic | 15.0% |
| !! | ACAATATGAGAATGTAAAAA+AGG | + | Chr5:97029956-97029975 | MsG0580029443.01.T01:intron | 20.0% |
| !! | ATAATAATAGCAGGAATATT+TGG | + | Chr5:97030047-97030066 | MsG0580029443.01.T01:intron | 20.0% |
| !! | TTAGATTATAAAATTGGTCA+AGG | + | Chr5:97030504-97030523 | MsG0580029443.01.T01:CDS | 20.0% |
| !! | TTCAGCTTAGATTATAAAAT+TGG | + | Chr5:97030498-97030517 | MsG0580029443.01.T01:CDS | 20.0% |
| !!! | TGATTATATTTTTAGCTTGA+TGG | + | Chr5:97029917-97029936 | MsG0580029443.01.T01:intron | 20.0% |
| !!! | TTTAATTTTGCAGATCAAAA+TGG | + | Chr5:97029739-97029758 | MsG0580029443.01.T01:intron | 20.0% |
| ! | AGAAACAACTTACTACTTAT+AGG | + | Chr5:97030296-97030315 | MsG0580029443.01.T01:intron | 25.0% |
| ! | AGCCAAATTTCAAAAGATTA+TGG | + | Chr5:97029415-97029434 | MsG0580029443.01.T01:CDS | 25.0% |
| ! | AGTATGTATTACTTCATGTT+TGG | + | Chr5:97029833-97029852 | MsG0580029443.01.T01:intron | 25.0% |
| ! | CAAACTTGCATAATAAGAAT+TGG | - | Chr5:97029296-97029315 | None:intergenic | 25.0% |
| ! | GCCAAATTTCAAAAGATTAT+GGG | + | Chr5:97029416-97029435 | MsG0580029443.01.T01:CDS | 25.0% |
| ! | GCTATAATTCTTAATGAATC+TGG | + | Chr5:97029695-97029714 | MsG0580029443.01.T01:intron | 25.0% |
| ! | TAAGCTATTACTATTATCAG+AGG | - | Chr5:97030341-97030360 | None:intergenic | 25.0% |
| ! | TACTATTATCAGAGGAAATA+TGG | - | Chr5:97030333-97030352 | None:intergenic | 25.0% |
| ! | TTGATACAGAAATACAATTC+TGG | + | Chr5:97029514-97029533 | MsG0580029443.01.T01:CDS | 25.0% |
| !! | AAAGACAAAGTATCCAAAAA+TGG | + | Chr5:97029151-97029170 | MsG0580029443.01.T01:CDS | 25.0% |
| !!! | ACCCATAATCTTTTGAAATT+TGG | - | Chr5:97029420-97029439 | None:intergenic | 25.0% |
| !!! | TTGTTTCTATAAGCTATCAT+GGG | - | Chr5:97030284-97030303 | None:intergenic | 25.0% |
| AACCAATCTAATCTTGATGA+AGG | + | Chr5:97029490-97029509 | MsG0580029443.01.T01:CDS | 30.0% | |
| ACCAATCTAATCTTGATGAA+GGG | + | Chr5:97029491-97029510 | MsG0580029443.01.T01:CDS | 30.0% | |
| ACTTTGATCAGAACATCAAA+AGG | - | Chr5:97029617-97029636 | None:intergenic | 30.0% | |
| AGAACCAACTTTAAATTCAG+AGG | - | Chr5:97029991-97030010 | None:intergenic | 30.0% | |
| ATAATCAAAATTACCCACCT+AGG | - | Chr5:97029784-97029803 | None:intergenic | 30.0% | |
| ATATTATCTGACTTTGTCTC+AGG | + | Chr5:97030360-97030379 | MsG0580029443.01.T01:intron | 30.0% | |
| GAAAACAGCAATTAAGAAGA+TGG | + | Chr5:97030721-97030740 | MsG0580029443.01.T01:intron | 30.0% | |
| GATTATAAAATTGGTCAAGG+TGG | + | Chr5:97030507-97030526 | MsG0580029443.01.T01:CDS | 30.0% | |
| TAACAGTCAATTGTTCTTGT+GGG | + | Chr5:97029389-97029408 | MsG0580029443.01.T01:CDS | 30.0% | |
| TACATATCAAGAATTAGCCA+AGG | + | Chr5:97030464-97030483 | MsG0580029443.01.T01:CDS | 30.0% | |
| TACTGTATTTACAGGCATTA+TGG | + | Chr5:97030422-97030441 | MsG0580029443.01.T01:CDS | 30.0% | |
| TCAAAAGGTGATGAAACAAA+AGG | - | Chr5:97029602-97029621 | None:intergenic | 30.0% | |
| TGTCAGATACTTCAAAAAGA+AGG | + | Chr5:97030097-97030116 | MsG0580029443.01.T01:intron | 30.0% | |
| TTTGAATACTCAGCAAAAGA+AGG | + | Chr5:97029250-97029269 | MsG0580029443.01.T01:CDS | 30.0% | |
| ! | AGAATTTCTTTGTGAGTTGA+AGG | + | Chr5:97030760-97030779 | MsG0580029443.01.T01:CDS | 30.0% |
| !! | GTTGTTTCTATAAGCTATCA+TGG | - | Chr5:97030285-97030304 | None:intergenic | 30.0% |
| ACATGTTCATCACTTGAATC+TGG | + | Chr5:97030790-97030809 | MsG0580029443.01.T01:CDS | 35.0% | |
| ACCAACTTTAAATTCAGAGG+AGG | - | Chr5:97029988-97030007 | None:intergenic | 35.0% | |
| ACCCTTCATCAAGATTAGAT+TGG | - | Chr5:97029495-97029514 | None:intergenic | 35.0% | |
| ACTGTGGGTATAATAATAGC+AGG | + | Chr5:97030038-97030057 | MsG0580029443.01.T01:intron | 35.0% | |
| ATTATGTTCCCTTGTATCCT+AGG | + | Chr5:97029764-97029783 | MsG0580029443.01.T01:CDS | 35.0% | |
| CATACAATAAGTTGCATGAG+AGG | - | Chr5:97030699-97030718 | None:intergenic | 35.0% | |
| GAAGGAAGAGAAAACTAAAC+TGG | + | Chr5:97030115-97030134 | MsG0580029443.01.T01:CDS | 35.0% | |
| GCTGAAATTATTTGTAGCCT+TGG | - | Chr5:97030484-97030503 | None:intergenic | 35.0% | |
| GTAACAGTCAATTGTTCTTG+TGG | + | Chr5:97029388-97029407 | MsG0580029443.01.T01:CDS | 35.0% | |
| TCAATTTCAGCAATGGAAGT+GGG | + | Chr5:97029539-97029558 | MsG0580029443.01.T01:CDS | 35.0% | |
| TGTATTTACAGGCATTATGG+TGG | + | Chr5:97030425-97030444 | MsG0580029443.01.T01:CDS | 35.0% | |
| TGTTTATTACCTATCCACTC+AGG | + | Chr5:97029440-97029459 | MsG0580029443.01.T01:CDS | 35.0% | |
| ! | AAAATTGGTCAAGGTGGATT+TGG | + | Chr5:97030513-97030532 | MsG0580029443.01.T01:CDS | 35.0% |
| ! | GATGTTCTGATCAAAGTACT+TGG | + | Chr5:97029620-97029639 | MsG0580029443.01.T01:intron | 35.0% |
| !! | AAAGTTGGTTCTATATGAGC+AGG | + | Chr5:97029999-97030018 | MsG0580029443.01.T01:intron | 35.0% |
| !!! | GGCAAAAAGATTGCCATTTT+TGG | - | Chr5:97029167-97029186 | None:intergenic | 35.0% |
| AATTACCCACCTAGGATACA+AGG | - | Chr5:97029776-97029795 | None:intergenic | 40.0% | |
| AGTGCAGAGTATGAAACTTC+AGG | + | Chr5:97030384-97030403 | MsG0580029443.01.T01:CDS | 40.0% | |
| ATAGTGTTCATTCCAGGAAG+AGG | + | Chr5:97029562-97029581 | MsG0580029443.01.T01:CDS | 40.0% | |
| ATATGAGCAGGTCTTGCTAA+GGG | + | Chr5:97030011-97030030 | MsG0580029443.01.T01:intron | 40.0% | |
| ATTACCCACCTAGGATACAA+GGG | - | Chr5:97029775-97029794 | None:intergenic | 40.0% | |
| CACCTCCAATACATTCACAT+GGG | - | Chr5:97029213-97029232 | None:intergenic | 40.0% | |
| CCAATACATTCACATGGGAA+TGG | - | Chr5:97029208-97029227 | None:intergenic | 40.0% | |
| CCATTCCCATGTGAATGTAT+TGG | + | Chr5:97029205-97029224 | MsG0580029443.01.T01:CDS | 40.0% | |
| GAGTATGAAACTTCAGGATC+CGG | + | Chr5:97030390-97030409 | MsG0580029443.01.T01:CDS | 40.0% | |
| GTCAATTTCAGCAATGGAAG+TGG | + | Chr5:97029538-97029557 | MsG0580029443.01.T01:CDS | 40.0% | |
| GTCTACTATGCAGAACTTAG+AGG | + | Chr5:97030540-97030559 | MsG0580029443.01.T01:CDS | 40.0% | |
| TATATGAGCAGGTCTTGCTA+AGG | + | Chr5:97030010-97030029 | MsG0580029443.01.T01:intron | 40.0% | |
| TCACCTCCAATACATTCACA+TGG | - | Chr5:97029214-97029233 | None:intergenic | 40.0% | |
| TCATATACCTGCTAAGGCTA+AGG | + | Chr5:97029360-97029379 | MsG0580029443.01.T01:CDS | 40.0% | |
| TCCAGATCATATACCTGCTA+AGG | + | Chr5:97029354-97029373 | MsG0580029443.01.T01:CDS | 40.0% | |
| TGTATTGGAGGTGAGTTTCT+CGG | + | Chr5:97029220-97029239 | MsG0580029443.01.T01:CDS | 40.0% | |
| TTCCCATGTGAATGTATTGG+AGG | + | Chr5:97029208-97029227 | MsG0580029443.01.T01:CDS | 40.0% | |
| ! | GAAGCACTTTCAACTCAAGA+TGG | + | Chr5:97030140-97030159 | MsG0580029443.01.T01:CDS | 40.0% |
| ! | GCCTCCTCTGAATTTAAAGT+TGG | + | Chr5:97029984-97030003 | MsG0580029443.01.T01:intron | 40.0% |
| ! | TCTGGTGTCAATTTCAGCAA+TGG | + | Chr5:97029532-97029551 | MsG0580029443.01.T01:CDS | 40.0% |
| !! | ACATTAACCTTAGCCTTAGC+AGG | - | Chr5:97029370-97029389 | None:intergenic | 40.0% |
| !! | TGGAATGCTGACTCTAGAAA+AGG | - | Chr5:97029188-97029207 | None:intergenic | 40.0% |
| AAATACAGTAGCATGCCCAC+CGG | - | Chr5:97030412-97030431 | None:intergenic | 45.0% | |
| AGAGTATACGTACCTCTTCC+TGG | - | Chr5:97029577-97029596 | None:intergenic | 45.0% | |
| AGTGGGATAGTGTTCATTCC+AGG | + | Chr5:97029556-97029575 | MsG0580029443.01.T01:CDS | 45.0% | |
| ATCATCAGTCCTGAGTGGAT+AGG | - | Chr5:97029452-97029471 | None:intergenic | 45.0% | |
| ATGAAACTTCAGGATCCGGT+GGG | + | Chr5:97030394-97030413 | MsG0580029443.01.T01:CDS | 45.0% | |
| ATGTTCCCTTGTATCCTAGG+TGG | + | Chr5:97029767-97029786 | MsG0580029443.01.T01:intron | 45.0% | |
| GCCTTAGCAGGTATATGATC+TGG | - | Chr5:97029358-97029377 | None:intergenic | 45.0% | |
| GGGCATGCTACTGTATTTAC+AGG | + | Chr5:97030414-97030433 | MsG0580029443.01.T01:CDS | 45.0% | |
| TATGAAACTTCAGGATCCGG+TGG | + | Chr5:97030393-97030412 | MsG0580029443.01.T01:CDS | 45.0% | |
| TGATCTGCACGAGGGAAAAA+AGG | - | Chr5:97029883-97029902 | None:intergenic | 45.0% | |
| TGTTCCCTTGTATCCTAGGT+GGG | + | Chr5:97029768-97029787 | MsG0580029443.01.T01:intron | 45.0% | |
| ! | AGAGTATCATCAGTCCTGAG+TGG | - | Chr5:97029457-97029476 | None:intergenic | 45.0% |
| !!! | TTTTTTCCCTCGTGCAGATC+AGG | + | Chr5:97029882-97029901 | MsG0580029443.01.T01:intron | 45.0% |
| ATACCAACCTGATCTGCACG+AGG | - | Chr5:97029892-97029911 | None:intergenic | 50.0% | |
| CTATGCAGAACTTAGAGGCG+AGG | + | Chr5:97030545-97030564 | MsG0580029443.01.T01:CDS | 50.0% | |
| TACCAACCTGATCTGCACGA+GGG | - | Chr5:97029891-97029910 | None:intergenic | 50.0% | |
| ! | CTTGCTAAGGGTGCAACTGT+GGG | + | Chr5:97030023-97030042 | MsG0580029443.01.T01:intron | 50.0% |
| ! | TCTTGCTAAGGGTGCAACTG+TGG | + | Chr5:97030022-97030041 | MsG0580029443.01.T01:intron | 50.0% |
| TTCCCTCGTGCAGATCAGGT+TGG | + | Chr5:97029886-97029905 | MsG0580029443.01.T01:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 97029094 | 97030817 | 97029094 | ID=MsG0580029443.01;Name=MsG0580029443.01 |
| Chr5 | mRNA | 97029094 | 97030817 | 97029094 | ID=MsG0580029443.01.T01;Parent=MsG0580029443.01;Name=MsG0580029443.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0|0|1|0.75|0.6|5|0|287 |
| Chr5 | exon | 97029094 | 97029583 | 97029094 | ID=MsG0580029443.01.T01:exon:24805;Parent=MsG0580029443.01.T01 |
| Chr5 | exon | 97029752 | 97029785 | 97029752 | ID=MsG0580029443.01.T01:exon:24806;Parent=MsG0580029443.01.T01 |
| Chr5 | exon | 97030103 | 97030161 | 97030103 | ID=MsG0580029443.01.T01:exon:24807;Parent=MsG0580029443.01.T01 |
| Chr5 | exon | 97030382 | 97030566 | 97030382 | ID=MsG0580029443.01.T01:exon:24808;Parent=MsG0580029443.01.T01 |
| Chr5 | exon | 97030722 | 97030817 | 97030722 | ID=MsG0580029443.01.T01:exon:24809;Parent=MsG0580029443.01.T01 |
| Chr5 | CDS | 97029094 | 97029583 | 97029094 | ID=MsG0580029443.01.T01:cds;Parent=MsG0580029443.01.T01 |
| Chr5 | CDS | 97029752 | 97029785 | 97029752 | ID=MsG0580029443.01.T01:cds;Parent=MsG0580029443.01.T01 |
| Chr5 | CDS | 97030103 | 97030161 | 97030103 | ID=MsG0580029443.01.T01:cds;Parent=MsG0580029443.01.T01 |
| Chr5 | CDS | 97030382 | 97030566 | 97030382 | ID=MsG0580029443.01.T01:cds;Parent=MsG0580029443.01.T01 |
| Chr5 | CDS | 97030722 | 97030817 | 97030722 | ID=MsG0580029443.01.T01:cds;Parent=MsG0580029443.01.T01 |
| Gene Sequence |
| Protein sequence |
