AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029581.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029581.01.T01 MTR_5g088760 91.753 291 18 3 1 286 1 290 6.71e-165 460
MsG0580029581.01.T01 MTR_5g088760 91.429 280 18 3 12 286 3 281 5.54e-156 437
MsG0580029581.01.T01 MTR_5g088760 91.241 274 18 3 18 286 1 273 1.17e-151 426
MsG0580029581.01.T01 MTR_3g012030 49.329 298 122 9 1 287 1 280 2.75e-78 240
MsG0580029581.01.T01 MTR_8g041420 44.337 309 135 6 1 287 1 294 1.31e-74 231
MsG0580029581.01.T01 MTR_3g012030 46.619 281 121 9 18 287 1 263 1.55e-65 207
MsG0580029581.01.T01 MTR_3g012030 37.975 237 118 9 62 287 1 219 1.18e-32 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029581.01.T01 AT5G19490 44.000 300 124 8 1 297 1 259 4.61e-59 190
MsG0580029581.01.T01 AT3G12480 69.925 133 34 1 1 127 1 133 6.75e-59 190

Find 71 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTAACTTCCTCGATTTC+TGG 0.151578 5:-98876274 None:intergenic
AACTAGCCAACTTAAGTAAA+AGG 0.241392 5:+98876566 MsG0580029581.01.T01:CDS
GTGAGCAAAGTTCCTGATTT+AGG 0.300821 5:+98875394 MsG0580029581.01.T01:CDS
TAGTCAGTACCTTCATTTAG+AGG 0.303078 5:+98876772 MsG0580029581.01.T01:three_prime_UTR
GGAAGGGGCGGTAGGGGTAG+AGG 0.322327 5:+98876127 MsG0580029581.01.T01:CDS
AGTGTTAGACAAATCCTTAT+TGG 0.327540 5:+98876729 MsG0580029581.01.T01:three_prime_UTR
ATGCAAGCTGATGAAGATAT+AGG 0.348420 5:+98874133 MsG0580029581.01.T01:CDS
TTATGACTTCTCACATATAT+AGG 0.351806 5:+98876648 MsG0580029581.01.T01:three_prime_UTR
GCTTAACTTCCTCGATTTCT+GGG 0.371274 5:-98876273 None:intergenic
ACTTAAGTTGGCTAGTTGTA+AGG 0.372538 5:-98876560 None:intergenic
GGAGACCAAGAGAAGTAAAA+TGG 0.382690 5:+98875579 MsG0580029581.01.T01:CDS
AGGGGTAGAGGCAGGGGACG+TGG 0.387631 5:+98876139 MsG0580029581.01.T01:CDS
TAGACAAATCCTTATTGGTT+AGG 0.392591 5:+98876734 MsG0580029581.01.T01:three_prime_UTR
TCAATGCCTCCTAACCAATA+AGG 0.394814 5:-98876743 None:intergenic
TAAAAGGATTGATGAAGATA+TGG 0.395167 5:+98876582 MsG0580029581.01.T01:CDS
TTTCGATTTAAATCTGAATC+CGG 0.397431 5:+98876375 MsG0580029581.01.T01:CDS
GGGGCGGTAGGGGTAGAGGC+AGG 0.398203 5:+98876131 MsG0580029581.01.T01:CDS
GGCGGTAGGGGTAGAGGCAG+GGG 0.408013 5:+98876133 MsG0580029581.01.T01:CDS
TGCAAGCTGATGAAGATATA+GGG 0.408049 5:+98874134 MsG0580029581.01.T01:CDS
AGGGGACGTGGCCGCGGCCA+AGG 0.424123 5:+98876151 MsG0580029581.01.T01:CDS
AGAGGCAGGGGACGTGGCCG+CGG 0.424913 5:+98876145 MsG0580029581.01.T01:CDS
GCAGCAGAACCGCCTAAATC+AGG 0.433277 5:-98875406 None:intergenic
GAACAATGCTTAACTTCCTC+AGG 0.444484 5:-98876316 None:intergenic
TCCATGTCGTCATCCGGATC+CGG 0.447116 5:-98876394 None:intergenic
ACTTCCTCAGGTTCTTTGAC+TGG 0.454445 5:-98876304 None:intergenic
TTTCGAACTACCACTTCAGC+TGG 0.460443 5:-98876352 None:intergenic
TTAGGCGGTTCTGCTGCAAC+TGG 0.479475 5:+98875412 MsG0580029581.01.T01:CDS
CTTAAGTTGGCTAGTTGTAA+GGG 0.481167 5:-98876559 None:intergenic
ATTTCATCCATGTCGTCATC+CGG 0.486479 5:-98876400 None:intergenic
ACAAATCCTTATTGGTTAGG+AGG 0.487491 5:+98876737 MsG0580029581.01.T01:three_prime_UTR
ACCAGTGGAAGGGGCGGTAG+GGG 0.488619 5:+98876121 MsG0580029581.01.T01:CDS
TTACAAATGAAAAGCATTCA+CGG 0.491312 5:-98874389 None:intergenic
ATACCAGTGGAAGGGGCGGT+AGG 0.493238 5:+98876119 MsG0580029581.01.T01:CDS
TACCAGTGGAAGGGGCGGTA+GGG 0.494206 5:+98876120 MsG0580029581.01.T01:CDS
GAAGATGAACCGGATGGGAT+AGG 0.503037 5:-98876436 None:intergenic
ACCCCTACCGCCCCTTCCAC+TGG 0.506809 5:-98876122 None:intergenic
TTTAAATCTGAATCCGGATC+CGG 0.510680 5:+98876381 MsG0580029581.01.T01:CDS
GGGCGGTAGGGGTAGAGGCA+GGG 0.517634 5:+98876132 MsG0580029581.01.T01:CDS
CATGCGCATACCAGTGGAAG+GGG 0.522977 5:+98876112 MsG0580029581.01.T01:CDS
TCCGGATCCGGATGACGACA+TGG 0.537250 5:+98876393 MsG0580029581.01.T01:CDS
GACTACTTACAAACTAGAAG+AGG 0.544073 5:-98874175 None:intergenic
TGTGAAGCATTGAAGCAAAA+CGG 0.548283 5:+98876226 MsG0580029581.01.T01:CDS
ACCTCCTCTTAGTGACAGCT+TGG 0.548550 5:-98875441 None:intergenic
AATTTCAGAAGAGAAGATTG+AGG 0.553548 5:+98876489 MsG0580029581.01.T01:CDS
CATACGAGATAACACTTAGG+AGG 0.553719 5:+98874356 MsG0580029581.01.T01:CDS
TAATCATTAGAAAGTTCTGA+TGG 0.554324 5:+98876672 MsG0580029581.01.T01:three_prime_UTR
GAACCGGATGGGATAGGAGT+TGG 0.555156 5:-98876430 None:intergenic
GAGAAGATTGAGGAATACCC+TGG 0.559641 5:+98876499 MsG0580029581.01.T01:CDS
TCTACTGAGCCTCTAAATGA+AGG 0.562344 5:-98876781 None:intergenic
ATATCAGAAAAGGACCATCC+AGG 0.563775 5:-98876517 None:intergenic
GGAAGTTAAGCATTGTTCAC+CGG 0.563902 5:+98876321 MsG0580029581.01.T01:CDS
ACACCAACTCCTATCCCATC+CGG 0.568917 5:+98876427 MsG0580029581.01.T01:CDS
AACATGCGCATACCAGTGGA+AGG 0.579451 5:+98876110 MsG0580029581.01.T01:CDS
ACGACCAAGCTGTCACTAAG+AGG 0.580960 5:+98875437 MsG0580029581.01.T01:CDS
GGTAAGAAAACCAGCTGAAG+TGG 0.584865 5:+98876342 MsG0580029581.01.T01:CDS
TATCAGAAAAGGACCATCCA+GGG 0.585690 5:-98876516 None:intergenic
ATACGAGATAACACTTAGGA+GGG 0.600468 5:+98874357 MsG0580029581.01.T01:CDS
AGATATAGGGAAGATTGCAT+TGG 0.616410 5:+98874147 MsG0580029581.01.T01:CDS
TAATGTAAGCCCAGAAATCG+AGG 0.616586 5:+98876264 MsG0580029581.01.T01:CDS
AGCAAAGTTCCTGATTTAGG+CGG 0.623500 5:+98875397 MsG0580029581.01.T01:CDS
CGAGAACATGCGCATACCAG+TGG 0.633781 5:+98876106 MsG0580029581.01.T01:CDS
GGATGGGATAGGAGTTGGTG+TGG 0.637023 5:-98876425 None:intergenic
GCGCATACCAGTGGAAGGGG+CGG 0.637896 5:+98876115 MsG0580029581.01.T01:CDS
GAACATACGAGATAACACTT+AGG 0.637954 5:+98874353 MsG0580029581.01.T01:CDS
ACATGCGCATACCAGTGGAA+GGG 0.649450 5:+98876111 MsG0580029581.01.T01:CDS
AGATTGAGGAATACCCTGGA+TGG 0.653139 5:+98876503 MsG0580029581.01.T01:CDS
TTCACCAGTCAAAGAACCTG+AGG 0.656260 5:+98876300 MsG0580029581.01.T01:CDS
CTTACAAACTAGAAGAGGCA+CGG 0.671946 5:-98874170 None:intergenic
TACGAGATAACACTTAGGAG+GGG 0.675136 5:+98874358 MsG0580029581.01.T01:CDS
ACCAAGCTGTCACTAAGAGG+AGG 0.677608 5:+98875440 MsG0580029581.01.T01:CDS
TGACGATGATGACAGCGATG+AGG 0.685240 5:+98875558 MsG0580029581.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAATCAGT+TGG - Chr5:98876013-98876032 None:intergenic 10.0%
!! AAATTTAACAAAATTAAACA+AGG + Chr5:98874649-98874668 MsG0580029581.01.T01:intron 10.0%
!! AATTTCACAAAAAAAAAAAT+CGG + Chr5:98874625-98874644 MsG0580029581.01.T01:intron 10.0%
!! ATTGATATATTTATTTATGT+TGG - Chr5:98875080-98875099 None:intergenic 10.0%
!! TAGTAAAAAAAAATGTTAAA+AGG - Chr5:98873819-98873838 None:intergenic 10.0%
!! TATCTTTAAATTTAATATGT+TGG - Chr5:98874524-98874543 None:intergenic 10.0%
!!! TAAATTTTTTTCTTTATAGT+TGG - Chr5:98874498-98874517 None:intergenic 10.0%
!! AAGAAAAAATATTCTTCAAT+CGG - Chr5:98875213-98875232 None:intergenic 15.0%
!! ATAGTCATAAACAAATTAAA+TGG - Chr5:98874992-98875011 None:intergenic 15.0%
!! GTTTCAAAAAACAAAAAATA+GGG - Chr5:98874212-98874231 None:intergenic 15.0%
!! TAAACCTAATGATAATAATA+AGG - Chr5:98872909-98872928 None:intergenic 15.0%
!! TCCTTTATTAAAATTTGATA+TGG + Chr5:98873362-98873381 MsG0580029581.01.T01:intron 15.0%
!! TGTTTCAAAAAACAAAAAAT+AGG - Chr5:98874213-98874232 None:intergenic 15.0%
!!! AAAATTGATTTAAGTGATTA+TGG + Chr5:98875925-98875944 MsG0580029581.01.T01:intron 15.0%
!!! AATCACTTAAATCAATTTTT+TGG - Chr5:98875924-98875943 None:intergenic 15.0%
!!! ACAATTAGAAAAGATTTTTT+AGG + Chr5:98876695-98876714 MsG0580029581.01.T01:three_prime_UTR 15.0%
!!! ACCATATCAAATTTTAATAA+AGG - Chr5:98873366-98873385 None:intergenic 15.0%
!!! TATATTGTAATTTGTAAACA+GGG + Chr5:98873647-98873666 MsG0580029581.01.T01:intron 15.0%
!!! TGAAGAATATTTTTTCTTTT+GGG + Chr5:98875215-98875234 MsG0580029581.01.T01:intron 15.0%
!!! TGATTTGTATTTTGTATATT+AGG + Chr5:98875521-98875540 MsG0580029581.01.T01:intron 15.0%
!!! TTACAGATTAAATTTCTTTT+CGG - Chr5:98874750-98874769 None:intergenic 15.0%
!!! TTGAAGAATATTTTTTCTTT+TGG + Chr5:98875214-98875233 MsG0580029581.01.T01:intron 15.0%
!!! TTTTCTGTTTTTGTTTTATT+GGG + Chr5:98872872-98872891 MsG0580029581.01.T01:intron 15.0%
!!! TTTTTCTGTTTTTGTTTTAT+TGG + Chr5:98872871-98872890 MsG0580029581.01.T01:intron 15.0%
!! AAATCTTCTTTACCATAAAT+GGG + Chr5:98873471-98873490 MsG0580029581.01.T01:intron 20.0%
!! ATATAGAACAAATATAACCA+GGG - Chr5:98875278-98875297 None:intergenic 20.0%
!! ATTTAGTAAACACTCAATTA+TGG - Chr5:98874908-98874927 None:intergenic 20.0%
!! GAATCCTTATTATTATCATT+AGG + Chr5:98872902-98872921 MsG0580029581.01.T01:intron 20.0%
!! TAGCTCAATGTTTATTATTT+GGG + Chr5:98875162-98875181 MsG0580029581.01.T01:intron 20.0%
!! TTGTACAAAATGTTGTTAAA+TGG - Chr5:98875778-98875797 None:intergenic 20.0%
!!! ATCATTAGGTTTATTTTTGT+TGG + Chr5:98872916-98872935 MsG0580029581.01.T01:intron 20.0%
!!! ATTTTGATTATATGGATGAT+GGG + Chr5:98872947-98872966 MsG0580029581.01.T01:intron 20.0%
!!! ATTTTTCAATGTCAACTAAT+AGG + Chr5:98874941-98874960 MsG0580029581.01.T01:intron 20.0%
!!! CTATATTGTAATTTGTAAAC+AGG + Chr5:98873646-98873665 MsG0580029581.01.T01:intron 20.0%
!!! GAAGAATATTTTTTCTTTTG+GGG + Chr5:98875216-98875235 MsG0580029581.01.T01:intron 20.0%
!!! TATTTTGATTATATGGATGA+TGG + Chr5:98872946-98872965 MsG0580029581.01.T01:intron 20.0%
!!! TCATTAGGTTTATTTTTGTT+GGG + Chr5:98872917-98872936 MsG0580029581.01.T01:intron 20.0%
! AAAAATATTCTTCAATCGGT+CGG - Chr5:98875209-98875228 None:intergenic 25.0%
! AAATGTTAAAAGGACAAAAC+TGG - Chr5:98873809-98873828 None:intergenic 25.0%
! AATGAGTGAGAATTCAATAA+TGG - Chr5:98873986-98874005 None:intergenic 25.0%
! AATTGCATAAAATGTCTGTA+AGG - Chr5:98874588-98874607 None:intergenic 25.0%
! AGATAAAATAACTCTGTTGT+GGG + Chr5:98873042-98873061 MsG0580029581.01.T01:intron 25.0%
! AGCTCAATGTTTATTATTTG+GGG + Chr5:98875163-98875182 MsG0580029581.01.T01:intron 25.0%
! ATAAAAATACTGTCAGATAG+CGG - Chr5:98875890-98875909 None:intergenic 25.0%
! ATCAGCAAAACAATAACATT+AGG - Chr5:98873262-98873281 None:intergenic 25.0%
! ATGATCAATGATATCAATAG+TGG + Chr5:98873703-98873722 MsG0580029581.01.T01:intron 25.0%
! CAAAAAACAAATATGCAAAG+TGG - Chr5:98875666-98875685 None:intergenic 25.0%
! CACTCAATTATGGATAAAAT+TGG - Chr5:98874898-98874917 None:intergenic 25.0%
! CGGATTGAAAAAGAAAATAA+CGG + Chr5:98875703-98875722 MsG0580029581.01.T01:intron 25.0%
! GAAATCTTCTTTACCATAAA+TGG + Chr5:98873470-98873489 MsG0580029581.01.T01:intron 25.0%
! GATATAGAACAAATATAACC+AGG - Chr5:98875279-98875298 None:intergenic 25.0%
! GTAAATTAAAGCAACAACAA+AGG + Chr5:98874819-98874838 MsG0580029581.01.T01:intron 25.0%
! GTAGCTCAATGTTTATTATT+TGG + Chr5:98875161-98875180 MsG0580029581.01.T01:intron 25.0%
! TAAAAGGATTGATGAAGATA+TGG + Chr5:98876582-98876601 MsG0580029581.01.T01:CDS 25.0%
! TATAGAACAAATATAACCAG+GGG - Chr5:98875277-98875296 None:intergenic 25.0%
! TCAGCAAAACAATAACATTA+GGG - Chr5:98873261-98873280 None:intergenic 25.0%
! TCTATATAATTGTTAGAGAC+TGG + Chr5:98875044-98875063 MsG0580029581.01.T01:intron 25.0%
! TTATGACTTCTCACATATAT+AGG + Chr5:98876648-98876667 MsG0580029581.01.T01:three_prime_UTR 25.0%
! TTGCATAATTGATTATTGAC+AGG + Chr5:98874093-98874112 MsG0580029581.01.T01:intron 25.0%
! TTTCGATTTAAATCTGAATC+CGG + Chr5:98876375-98876394 MsG0580029581.01.T01:CDS 25.0%
!! AATTACCATTTTACTTCTCT+TGG - Chr5:98875587-98875606 None:intergenic 25.0%
!! ATCAATCCTTTTACTTAAGT+TGG - Chr5:98876575-98876594 None:intergenic 25.0%
!! CTTTTCTGATATGGAAAAAA+TGG + Chr5:98876528-98876547 MsG0580029581.01.T01:CDS 25.0%
!! TAATCATTAGAAAGTTCTGA+TGG + Chr5:98876672-98876691 MsG0580029581.01.T01:three_prime_UTR 25.0%
!! TAGTTTATCTGTATTGCTTT+TGG + Chr5:98874425-98874444 MsG0580029581.01.T01:intron 25.0%
!! TATTTCACATAGCGTATTTT+TGG - Chr5:98873750-98873769 None:intergenic 25.0%
!! TTGTACAAAATCATGTTTTG+CGG + Chr5:98875790-98875809 MsG0580029581.01.T01:intron 25.0%
!! TTGTGATTTTTGTCTTGTAT+TGG - Chr5:98874778-98874797 None:intergenic 25.0%
!!! ATTTTTTTGTACTGTGCTTT+TGG + Chr5:98874235-98874254 MsG0580029581.01.T01:intron 25.0%
!!! CATTAGGTTTATTTTTGTTG+GGG + Chr5:98872918-98872937 MsG0580029581.01.T01:intron 25.0%
!!! CATTTTTTCCATATCAGAAA+AGG - Chr5:98876530-98876549 None:intergenic 25.0%
!!! GGTGAAATAAGATTTGTTTT+TGG + Chr5:98873325-98873344 MsG0580029581.01.T01:intron 25.0%
!!! GGTTGGTTATTTTGATTATA+TGG + Chr5:98872939-98872958 MsG0580029581.01.T01:intron 25.0%
!!! TCTTTTCACCATTCATTTTT+TGG + Chr5:98873854-98873873 MsG0580029581.01.T01:intron 25.0%
!!! TTACAAATGAAAAGCATTCA+CGG - Chr5:98874392-98874411 None:intergenic 25.0%
AAAAGCTTTACATGTCTTCT+TGG + Chr5:98875314-98875333 MsG0580029581.01.T01:intron 30.0%
AAACAAGGACTAATTTCACA+AGG + Chr5:98874664-98874683 MsG0580029581.01.T01:intron 30.0%
AACAGATGCCAAAAAATGAA+TGG - Chr5:98873865-98873884 None:intergenic 30.0%
AACATTAGGGTACATAGTAA+GGG - Chr5:98873248-98873267 None:intergenic 30.0%
AACTAGCCAACTTAAGTAAA+AGG + Chr5:98876566-98876585 MsG0580029581.01.T01:CDS 30.0%
AACTGTACTACACAATTTGT+CGG - Chr5:98873415-98873434 None:intergenic 30.0%
AAGCATATAGGTACTTCATA+AGG - Chr5:98873556-98873575 None:intergenic 30.0%
AAGTTCAGTTGTCGAAAATT+AGG - Chr5:98875134-98875153 None:intergenic 30.0%
AATTTCAGAAGAGAAGATTG+AGG + Chr5:98876489-98876508 MsG0580029581.01.T01:CDS 30.0%
AGTGTTAGACAAATCCTTAT+TGG + Chr5:98876729-98876748 MsG0580029581.01.T01:three_prime_UTR 30.0%
ATAAAATAACTCTGTTGTGG+GGG + Chr5:98873044-98873063 MsG0580029581.01.T01:intron 30.0%
ATAGAAAACATGACCAAAAG+CGG - Chr5:98873630-98873649 None:intergenic 30.0%
CAAATTGTGTAGTACAGTTA+CGG + Chr5:98873416-98873435 MsG0580029581.01.T01:intron 30.0%
CAAGAAGATAAACAGTCATT+TGG - Chr5:98874017-98874036 None:intergenic 30.0%
CATCTGTTAGAAATCTGTTT+GGG + Chr5:98873877-98873896 MsG0580029581.01.T01:intron 30.0%
GACAAGAAAAAAAACCGAAA+GGG - Chr5:98872811-98872830 None:intergenic 30.0%
GAGATAAAATAACTCTGTTG+TGG + Chr5:98873041-98873060 MsG0580029581.01.T01:intron 30.0%
GATAAAATAACTCTGTTGTG+GGG + Chr5:98873043-98873062 MsG0580029581.01.T01:intron 30.0%
GGTAAAGAAGATTTCATGAT+TGG - Chr5:98873465-98873484 None:intergenic 30.0%
TAACATTAGGGTACATAGTA+AGG - Chr5:98873249-98873268 None:intergenic 30.0%
TAATTGATTATTGACAGGCT+AGG + Chr5:98874098-98874117 MsG0580029581.01.T01:intron 30.0%
TACTTGCTTAATATTGATGC+CGG + Chr5:98873019-98873038 MsG0580029581.01.T01:intron 30.0%
TGCATTTACATGTCTTTGTT+TGG + Chr5:98873517-98873536 MsG0580029581.01.T01:intron 30.0%
TTGTTCTATATCCTCTTTCT+TGG + Chr5:98875287-98875306 MsG0580029581.01.T01:intron 30.0%
! AAAAAACAACCTTTTCAACG+AGG - Chr5:98872834-98872853 None:intergenic 30.0%
! AAAAACAACCTTTTCAACGA+GGG - Chr5:98872833-98872852 None:intergenic 30.0%
! AATGGCTTTTCTGCAATTTA+TGG + Chr5:98875974-98875993 MsG0580029581.01.T01:intron 30.0%
! AATTGAAACCGAAAGCATAT+AGG - Chr5:98873568-98873587 None:intergenic 30.0%
! AGCTATAACATAGTGGAATA+TGG - Chr5:98875861-98875880 None:intergenic 30.0%
! ATGAAGTACCTATATGCTTT+CGG + Chr5:98873557-98873576 MsG0580029581.01.T01:intron 30.0%
! ATGCTCATAGATATCGTTTT+GGG + Chr5:98873304-98873323 MsG0580029581.01.T01:intron 30.0%
! TAGACAAATCCTTATTGGTT+AGG + Chr5:98876734-98876753 MsG0580029581.01.T01:three_prime_UTR 30.0%
! TCCACTATATTATAGCTCTA+TGG + Chr5:98875835-98875854 MsG0580029581.01.T01:intron 30.0%
!! AACTGATTTTGAAGATGAAC+CGG - Chr5:98876449-98876468 None:intergenic 30.0%
!! CAACAGAGTTATTTTATCTC+CGG - Chr5:98873041-98873060 None:intergenic 30.0%
!!! CAGTTGATAGCTATTTTACT+CGG - Chr5:98876039-98876058 None:intergenic 30.0%
!!! TTTCTTTTTCAATCCGTGAT+AGG - Chr5:98875699-98875718 None:intergenic 30.0%
AAAAACCGAAAGGGTAAACA+AGG - Chr5:98872802-98872821 None:intergenic 35.0%
ACTAAGCAAATGCCCATTTA+TGG - Chr5:98873486-98873505 None:intergenic 35.0%
AGATATAGGGAAGATTGCAT+TGG + Chr5:98874147-98874166 MsG0580029581.01.T01:CDS 35.0%
ATACGAGATAACACTTAGGA+GGG + Chr5:98874357-98874376 MsG0580029581.01.T01:CDS 35.0%
ATGATACGTTGTCATAGGTT+TGG + Chr5:98873602-98873621 MsG0580029581.01.T01:intron 35.0%
ATGCAAGCTGATGAAGATAT+AGG + Chr5:98874133-98874152 MsG0580029581.01.T01:CDS 35.0%
ATTGAATTCTCACTCATTGC+AGG + Chr5:98873988-98874007 MsG0580029581.01.T01:intron 35.0%
CAGGAATATTACTCAGCAAA+AGG - Chr5:98875633-98875652 None:intergenic 35.0%
GAACATACGAGATAACACTT+AGG + Chr5:98874353-98874372 MsG0580029581.01.T01:CDS 35.0%
GACACAATCAAATTGCTAGT+TGG - Chr5:98873943-98873962 None:intergenic 35.0%
GACTACTTACAAACTAGAAG+AGG - Chr5:98874178-98874197 None:intergenic 35.0%
GCATCTGTTAGAAATCTGTT+TGG + Chr5:98873876-98873895 MsG0580029581.01.T01:intron 35.0%
GCCATAGAGCTATAATATAG+TGG - Chr5:98875839-98875858 None:intergenic 35.0%
GCTATAGAGCTATAACATAG+TGG - Chr5:98875868-98875887 None:intergenic 35.0%
GGACAAGAAAAAAAACCGAA+AGG - Chr5:98872812-98872831 None:intergenic 35.0%
TAAAATAACTCTGTTGTGGG+GGG + Chr5:98873045-98873064 MsG0580029581.01.T01:intron 35.0%
TAGAAATCTGTTTGGGAACA+TGG + Chr5:98873884-98873903 MsG0580029581.01.T01:intron 35.0%
TAGTCAGTACCTTCATTTAG+AGG + Chr5:98876772-98876791 MsG0580029581.01.T01:three_prime_UTR 35.0%
TCGGTTTCAATTACCAATAG+CGG + Chr5:98873576-98873595 MsG0580029581.01.T01:intron 35.0%
TGATTATGGAAGTTCACTAC+TGG + Chr5:98875939-98875958 MsG0580029581.01.T01:intron 35.0%
TGCAAGCTGATGAAGATATA+GGG + Chr5:98874134-98874153 MsG0580029581.01.T01:CDS 35.0%
TGTATGCAACTTGGGTTTAA+GGG + Chr5:98873202-98873221 MsG0580029581.01.T01:intron 35.0%
TTGGACCATGTTATATTCAG+CGG + Chr5:98874444-98874463 MsG0580029581.01.T01:intron 35.0%
TTTAAATCTGAATCCGGATC+CGG + Chr5:98876381-98876400 MsG0580029581.01.T01:CDS 35.0%
! ACAAATCCTTATTGGTTAGG+AGG + Chr5:98876737-98876756 MsG0580029581.01.T01:three_prime_UTR 35.0%
! AGCTAGCAAAATTTTTACGC+AGG + Chr5:98874470-98874489 MsG0580029581.01.T01:intron 35.0%
! CATGCTCATAGATATCGTTT+TGG + Chr5:98873303-98873322 MsG0580029581.01.T01:intron 35.0%
! CTAGCAAAATTTTTACGCAG+GGG + Chr5:98874472-98874491 MsG0580029581.01.T01:intron 35.0%
! GATCTACAGTTTTACTTCCT+TGG - Chr5:98876171-98876190 None:intergenic 35.0%
! GCTAGCAAAATTTTTACGCA+GGG + Chr5:98874471-98874490 MsG0580029581.01.T01:intron 35.0%
! GTTTAAGGGGTAGTAGTTTT+TGG + Chr5:98873216-98873235 MsG0580029581.01.T01:intron 35.0%
! TGTTTATTATTTGGGGTAGC+CGG + Chr5:98875170-98875189 MsG0580029581.01.T01:intron 35.0%
! TTCGACAACTGAACTTGTTT+GGG + Chr5:98875138-98875157 MsG0580029581.01.T01:intron 35.0%
! TTTCGACAACTGAACTTGTT+TGG + Chr5:98875137-98875156 MsG0580029581.01.T01:intron 35.0%
!! ACTTAAGTTGGCTAGTTGTA+AGG - Chr5:98876563-98876582 None:intergenic 35.0%
!! ATTTTGAAGATGAACCGGAT+GGG - Chr5:98876444-98876463 None:intergenic 35.0%
!! CTATTTCGTACAAAGTGTTG+AGG + Chr5:98873172-98873191 MsG0580029581.01.T01:intron 35.0%
!! CTTAAGTTGGCTAGTTGTAA+GGG - Chr5:98876562-98876581 None:intergenic 35.0%
!! GGTCGGTATGTATTTTTATC+CGG - Chr5:98875192-98875211 None:intergenic 35.0%
!! TAGTGGATTGCAGAAAATAG+CGG + Chr5:98873720-98873739 MsG0580029581.01.T01:intron 35.0%
!! TGTGAAGCATTGAAGCAAAA+CGG + Chr5:98876226-98876245 MsG0580029581.01.T01:CDS 35.0%
!!! AGCTTTTAGAACCAAGAAAG+AGG - Chr5:98875301-98875320 None:intergenic 35.0%
!!! AGGTTTATTTTTGTTGGGGT+TGG + Chr5:98872922-98872941 MsG0580029581.01.T01:intron 35.0%
!!! GGCTTACATTATTTTGAGTG+TGG - Chr5:98876255-98876274 None:intergenic 35.0%
AAAGGGTAAACAAGGAAAGG+AGG - Chr5:98872794-98872813 None:intergenic 40.0%
AACGTATCATATGCCGCTAT+TGG - Chr5:98873592-98873611 None:intergenic 40.0%
AGAACAAATATAACCAGGGG+CGG - Chr5:98875274-98875293 None:intergenic 40.0%
AGCAAAGTTCCTGATTTAGG+CGG + Chr5:98875397-98875416 MsG0580029581.01.T01:CDS 40.0%
AGCTTAACTTCCTCGATTTC+TGG - Chr5:98876277-98876296 None:intergenic 40.0%
ATATCAGAAAAGGACCATCC+AGG - Chr5:98876520-98876539 None:intergenic 40.0%
ATTTCATCCATGTCGTCATC+CGG - Chr5:98876403-98876422 None:intergenic 40.0%
CATACGAGATAACACTTAGG+AGG + Chr5:98874356-98874375 MsG0580029581.01.T01:CDS 40.0%
CTTACAAACTAGAAGAGGCA+CGG - Chr5:98874173-98874192 None:intergenic 40.0%
GAACAATGCTTAACTTCCTC+AGG - Chr5:98876319-98876338 None:intergenic 40.0%
GCTTAACTTCCTCGATTTCT+GGG - Chr5:98876276-98876295 None:intergenic 40.0%
GGAGACCAAGAGAAGTAAAA+TGG + Chr5:98875579-98875598 MsG0580029581.01.T01:CDS 40.0%
GGCATATGATACGTTGTCAT+AGG + Chr5:98873597-98873616 MsG0580029581.01.T01:intron 40.0%
GTATGCAACTTGGGTTTAAG+GGG + Chr5:98873203-98873222 MsG0580029581.01.T01:intron 40.0%
GTGAGCAAAGTTCCTGATTT+AGG + Chr5:98875394-98875413 MsG0580029581.01.T01:CDS 40.0%
GTGTATGCAACTTGGGTTTA+AGG + Chr5:98873201-98873220 MsG0580029581.01.T01:intron 40.0%
TAATGTAAGCCCAGAAATCG+AGG + Chr5:98876264-98876283 MsG0580029581.01.T01:CDS 40.0%
TACGAGATAACACTTAGGAG+GGG + Chr5:98874358-98874377 MsG0580029581.01.T01:CDS 40.0%
TATCAGAAAAGGACCATCCA+GGG - Chr5:98876519-98876538 None:intergenic 40.0%
TCAATGCCTCCTAACCAATA+AGG - Chr5:98876746-98876765 None:intergenic 40.0%
TCTACTGAGCCTCTAAATGA+AGG - Chr5:98876784-98876803 None:intergenic 40.0%
TGAAATAGCAGACAGTTTCG+CGG + Chr5:98873763-98873782 MsG0580029581.01.T01:intron 40.0%
TTTCTTGTCCCTCGTTGAAA+AGG + Chr5:98872822-98872841 MsG0580029581.01.T01:intron 40.0%
! CCTTTCCTTGTTTACCCTTT+CGG + Chr5:98872794-98872813 MsG0580029581.01.T01:intron 40.0%
! GGAAGTTAAGCATTGTTCAC+CGG + Chr5:98876321-98876340 MsG0580029581.01.T01:CDS 40.0%
! TCGACAACTGAACTTGTTTG+GGG + Chr5:98875139-98875158 MsG0580029581.01.T01:intron 40.0%
! TGGATGGTCCTTTTCTGATA+TGG + Chr5:98876519-98876538 MsG0580029581.01.T01:CDS 40.0%
!! GATTTTGAAGATGAACCGGA+TGG - Chr5:98876445-98876464 None:intergenic 40.0%
!! TACTGGCTTGTGAATGCAAA+TGG + Chr5:98875956-98875975 MsG0580029581.01.T01:intron 40.0%
!! TATGGATGATGGGTTTCTCT+TGG + Chr5:98872957-98872976 MsG0580029581.01.T01:intron 40.0%
!! TTTCGTACAAAGTGTTGAGG+AGG + Chr5:98873175-98873194 MsG0580029581.01.T01:intron 40.0%
!!! ACTTCAGCTGGTTTTCTTAC+CGG - Chr5:98876343-98876362 None:intergenic 40.0%
!!! TTTTTCTTTTGGGGTAGCCA+AGG + Chr5:98875225-98875244 MsG0580029581.01.T01:intron 40.0%
ACAGAACTCGCGCAAGAAAT+AGG - Chr5:98875490-98875509 None:intergenic 45.0%
ACTTCCTCAGGTTCTTTGAC+TGG - Chr5:98876307-98876326 None:intergenic 45.0%
AGATTGAGGAATACCCTGGA+TGG + Chr5:98876503-98876522 MsG0580029581.01.T01:CDS 45.0%
ATATGCAAAGTGGTGTGCAG+TGG - Chr5:98875656-98875675 None:intergenic 45.0%
CCGAAAGGGTAAACAAGGAA+AGG - Chr5:98872797-98872816 None:intergenic 45.0%
CTTCGCCGCTGAATATAACA+TGG - Chr5:98874452-98874471 None:intergenic 45.0%
GAAAGGAGGAACTTACAGCA+GGG - Chr5:98872780-98872799 None:intergenic 45.0%
GAAATAGCAGACAGTTTCGC+GGG + Chr5:98873764-98873783 MsG0580029581.01.T01:intron 45.0%
GAGAAGATTGAGGAATACCC+TGG + Chr5:98876499-98876518 MsG0580029581.01.T01:CDS 45.0%
GGTAAGAAAACCAGCTGAAG+TGG + Chr5:98876342-98876361 MsG0580029581.01.T01:CDS 45.0%
GTACAGTTACGGTTCCTGAT+CGG + Chr5:98873427-98873446 MsG0580029581.01.T01:intron 45.0%
TTCACCAGTCAAAGAACCTG+AGG + Chr5:98876300-98876319 MsG0580029581.01.T01:CDS 45.0%
TTGTGCAGTGTTGCCTATCA+CGG + Chr5:98875683-98875702 MsG0580029581.01.T01:intron 45.0%
TTTCGAACTACCACTTCAGC+TGG - Chr5:98876355-98876374 None:intergenic 45.0%
AACATGCGCATACCAGTGGA+AGG + Chr5:98876110-98876129 MsG0580029581.01.T01:CDS 50.0%
ACACCAACTCCTATCCCATC+CGG + Chr5:98876427-98876446 MsG0580029581.01.T01:CDS 50.0%
ACATGCGCATACCAGTGGAA+GGG + Chr5:98876111-98876130 MsG0580029581.01.T01:CDS 50.0%
ACCAAGCTGTCACTAAGAGG+AGG + Chr5:98875440-98875459 MsG0580029581.01.T01:CDS 50.0%
ACCTCCTCTTAGTGACAGCT+TGG - Chr5:98875444-98875463 None:intergenic 50.0%
ACGACCAAGCTGTCACTAAG+AGG + Chr5:98875437-98875456 MsG0580029581.01.T01:CDS 50.0%
AGTTTCGCGGGCAATTGTGT+CGG + Chr5:98873776-98873795 MsG0580029581.01.T01:intron 50.0%
ATGCTGTGTACTACGGTACG+AGG + Chr5:98873675-98873694 MsG0580029581.01.T01:intron 50.0%
CGGTTCCTTTCATGTAGGAG+GGG - Chr5:98875254-98875273 None:intergenic 50.0%
GAAGATGAACCGGATGGGAT+AGG - Chr5:98876439-98876458 None:intergenic 50.0%
GAGGTGCGTGTATGCAACTT+GGG + Chr5:98873194-98873213 MsG0580029581.01.T01:intron 50.0%
GCGGTTCCTTTCATGTAGGA+GGG - Chr5:98875255-98875274 None:intergenic 50.0%
GGAAAGGAGGAACTTACAGC+AGG - Chr5:98872781-98872800 None:intergenic 50.0%
GGCTGTCATGCTGTGTACTA+CGG + Chr5:98873668-98873687 MsG0580029581.01.T01:intron 50.0%
TGACGATGATGACAGCGATG+AGG + Chr5:98875558-98875577 MsG0580029581.01.T01:CDS 50.0%
TGCTGTGTACTACGGTACGA+GGG + Chr5:98873676-98873695 MsG0580029581.01.T01:intron 50.0%
! ACTCTGTTGTGGGGGGTTTT+TGG + Chr5:98873052-98873071 MsG0580029581.01.T01:intron 50.0%
! CAGTTTTACTTCCTTGGCCG+CGG - Chr5:98876165-98876184 None:intergenic 50.0%
! CATAGGTTTGGCACCGCTTT+TGG + Chr5:98873614-98873633 MsG0580029581.01.T01:intron 50.0%
AGGGGCGGTTCCTTTCATGT+AGG - Chr5:98875259-98875278 None:intergenic 55.0%
CATGCGCATACCAGTGGAAG+GGG + Chr5:98876112-98876131 MsG0580029581.01.T01:CDS 55.0%
CGAGAACATGCGCATACCAG+TGG + Chr5:98876106-98876125 MsG0580029581.01.T01:CDS 55.0%
CGCATGTTCTCGCTGTGTGA+AGG - Chr5:98876098-98876117 None:intergenic 55.0%
CTCGCGCAAGAAATAGGAGC+AGG - Chr5:98875484-98875503 None:intergenic 55.0%
GAACCGGATGGGATAGGAGT+TGG - Chr5:98876433-98876452 None:intergenic 55.0%
GCAGCAGAACCGCCTAAATC+AGG - Chr5:98875409-98875428 None:intergenic 55.0%
GGCGGTTCCTTTCATGTAGG+AGG - Chr5:98875256-98875275 None:intergenic 55.0%
GGCTACCCCTCCTACATGAA+AGG + Chr5:98875246-98875265 MsG0580029581.01.T01:intron 55.0%
TACATGAAAGGAACCGCCCC+TGG + Chr5:98875258-98875277 MsG0580029581.01.T01:intron 55.0%
TCATGTAGGAGGGGTAGCCT+TGG - Chr5:98875245-98875264 None:intergenic 55.0%
TCCATGTCGTCATCCGGATC+CGG - Chr5:98876397-98876416 None:intergenic 55.0%
TTAGGCGGTTCTGCTGCAAC+TGG + Chr5:98875412-98875431 MsG0580029581.01.T01:CDS 55.0%
! GGAGGTGCGTGTATGCAACT+TGG + Chr5:98873193-98873212 MsG0580029581.01.T01:intron 55.0%
!! GGATGGGATAGGAGTTGGTG+TGG - Chr5:98876428-98876447 None:intergenic 55.0%
ATACCAGTGGAAGGGGCGGT+AGG + Chr5:98876119-98876138 MsG0580029581.01.T01:CDS 60.0%
GCAAAGTGGTGTGCAGTGGC+AGG - Chr5:98875652-98875671 None:intergenic 60.0%
TACCAGTGGAAGGGGCGGTA+GGG + Chr5:98876120-98876139 MsG0580029581.01.T01:CDS 60.0%
TCCGGATCCGGATGACGACA+TGG + Chr5:98876393-98876412 MsG0580029581.01.T01:CDS 60.0%
! GGATACGCAACGCACCGATC+AGG - Chr5:98873444-98873463 None:intergenic 60.0%
ACCAGTGGAAGGGGCGGTAG+GGG + Chr5:98876121-98876140 MsG0580029581.01.T01:CDS 65.0%
GCGCATACCAGTGGAAGGGG+CGG + Chr5:98876115-98876134 MsG0580029581.01.T01:CDS 65.0%
ACCCCTACCGCCCCTTCCAC+TGG - Chr5:98876125-98876144 None:intergenic 70.0%
AGGGGTAGAGGCAGGGGACG+TGG + Chr5:98876139-98876158 MsG0580029581.01.T01:CDS 70.0%
GGAAGGGGCGGTAGGGGTAG+AGG + Chr5:98876127-98876146 MsG0580029581.01.T01:CDS 70.0%
GGCGGTAGGGGTAGAGGCAG+GGG + Chr5:98876133-98876152 MsG0580029581.01.T01:CDS 70.0%
GGGCGGTAGGGGTAGAGGCA+GGG + Chr5:98876132-98876151 MsG0580029581.01.T01:CDS 70.0%
AGAGGCAGGGGACGTGGCCG+CGG + Chr5:98876145-98876164 MsG0580029581.01.T01:CDS 75.0%
GGGGCGGTAGGGGTAGAGGC+AGG + Chr5:98876131-98876150 MsG0580029581.01.T01:CDS 75.0%
! AGGGGACGTGGCCGCGGCCA+AGG + Chr5:98876151-98876170 MsG0580029581.01.T01:CDS 80.0%
Chromosome Type Strat End Strand Name
Chr5 gene 98872751 98876836 98872751 ID=MsG0580029581.01;Name=MsG0580029581.01
Chr5 mRNA 98872751 98876836 98872751 ID=MsG0580029581.01.T01;Parent=MsG0580029581.01;Name=MsG0580029581.01.T01;_AED=0.38;_eAED=0.38;_QI=0|0.8|0.66|1|0.8|0.83|6|209|298
Chr5 exon 98872751 98872783 98872751 ID=MsG0580029581.01.T01:exon:25923;Parent=MsG0580029581.01.T01
Chr5 exon 98874115 98874187 98874115 ID=MsG0580029581.01.T01:exon:25924;Parent=MsG0580029581.01.T01
Chr5 exon 98874314 98874407 98874314 ID=MsG0580029581.01.T01:exon:25925;Parent=MsG0580029581.01.T01
Chr5 exon 98875345 98875461 98875345 ID=MsG0580029581.01.T01:exon:25926;Parent=MsG0580029581.01.T01
Chr5 exon 98875543 98875600 98875543 ID=MsG0580029581.01.T01:exon:25927;Parent=MsG0580029581.01.T01
Chr5 exon 98876106 98876836 98876106 ID=MsG0580029581.01.T01:exon:25928;Parent=MsG0580029581.01.T01
Chr5 CDS 98872751 98872783 98872751 ID=MsG0580029581.01.T01:cds;Parent=MsG0580029581.01.T01
Chr5 CDS 98874115 98874187 98874115 ID=MsG0580029581.01.T01:cds;Parent=MsG0580029581.01.T01
Chr5 CDS 98874314 98874407 98874314 ID=MsG0580029581.01.T01:cds;Parent=MsG0580029581.01.T01
Chr5 CDS 98875345 98875461 98875345 ID=MsG0580029581.01.T01:cds;Parent=MsG0580029581.01.T01
Chr5 CDS 98875543 98875600 98875543 ID=MsG0580029581.01.T01:cds;Parent=MsG0580029581.01.T01
Chr5 CDS 98876106 98876627 98876106 ID=MsG0580029581.01.T01:cds;Parent=MsG0580029581.01.T01
Chr5 three_prime_UTR 98876628 98876836 98876628 ID=MsG0580029581.01.T01:three_prime_utr;Parent=MsG0580029581.01.T01
Gene Sequence

>MsG0580029581.01.T01

ATGAGGAAGAAACTAGATACTCGTTTCCCTGCTGCTAGGATTAAGAAAATTATGCAAGCTGATGAAGATATAGGGAAGATTGCATTGGCCGTGCCTCTTCTAGTTTCAAAAGCACTAGAGCTATTTCTGCAAGATTTGTGTGATAGAACATACGAGATAACACTTAGGAGGGGAGCAAAGACCGTGAATGCTTTTCATTTAAAACAGTGCATACAAACTTGTAATGTCTTTGATTTTCTGAAAGATACTGTGAGCAAAGTTCCTGATTTAGGCGGTTCTGCTGCAACTGGTGACGACCAAGCTGTCACTAAGAGGAGGAAAGTTTCTGAAGATGACGATGATGACAGCGATGAGGAGACCAAGAGAAGTAAAATGCGAGAACATGCGCATACCAGTGGAAGGGGCGGTAGGGGTAGAGGCAGGGGACGTGGCCGCGGCCAAGGAAGTAAAACTGTAGATCAAGAGATCAATTCACATGTCAAGTTTGAAGAAGATTGTGAAGCATTGAAGCAAAACGGCAACCACACTCAAAATAATGTAAGCCCAGAAATCGAGGAAGTTAAGCTGAGTTCACCAGTCAAAGAACCTGAGGAAGTTAAGCATTGTTCACCGGTAAGAAAACCAGCTGAAGTGGTAGTTCGAAATTTCGATTTAAATCTGAATCCGGATCCGGATGACGACATGGATGAAATATCCACACCAACTCCTATCCCATCCGGTTCATCTTCAAAATCAGTTTCAGAAGAGAAGATAAAATCAATTTCAGAAGAGAAGATTGAGGAATACCCTGGATGGTCCTTTTCTGATATGGAAAAAATGGCTATTGATCCCTTACAACTAGCCAACTTAAGTAAAAGGATTGATGAAGATATGGAAGATTATGATGAAGAAGTGTAG
Protein sequence

>MsG0580029581.01.T01

MRKKLDTRFPAARIKKIMQADEDIGKIALAVPLLVSKALELFLQDLCDRTYEITLRRGAKTVNAFHLKQCIQTCNVFDFLKDTVSKVPDLGGSAATGDDQAVTKRRKVSEDDDDDSDEETKRSKMREHAHTSGRGGRGRGRGRGRGQGSKTVDQEINSHVKFEEDCEALKQNGNHTQNNVSPEIEEVKLSSPVKEPEEVKHCSPVRKPAEVVVRNFDLNLNPDPDDDMDEISTPTPIPSGSSSKSVSEEKIKSISEEKIEEYPGWSFSDMEKMAIDPLQLANLSKRIDEDMEDYDEEV*