AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029848.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029848.01.T01 MTR_5g091000 62.205 254 47 2 10 214 201 454 1.65e-92 281
MsG0580029848.01.T01 MTR_4g112830 72.340 47 13 0 214 260 109 155 1.96e-13 68.6
MsG0580029848.01.T01 MTR_4g112610 72.340 47 13 0 214 260 103 149 7.67e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029848.01.T01 AT2G30880 43.846 260 90 6 10 214 205 463 1.55e-47 165
MsG0580029848.01.T01 AT2G30880 48.052 154 41 3 10 125 205 357 4.38e-28 110

Find 53 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATAAGGAGCTTCAAAATT+TGG 0.132543 5:+102940897 MsG0580029848.01.T01:CDS
ATAGGAAACACTAAGATTTA+AGG 0.212868 5:+102940876 MsG0580029848.01.T01:intron
CCAGAGAGATGCTGCTATTA+AGG 0.273863 5:+102941487 MsG0580029848.01.T01:CDS
CAGCGAATGGAGCGATATTC+AGG 0.306981 5:+102942779 MsG0580029848.01.T01:CDS
TGGTATAATGGGGCAGGTGG+GGG 0.335401 5:+102940691 None:intergenic
AAAATTTGGCTCGAGACCTT+CGG 0.351420 5:+102940911 MsG0580029848.01.T01:CDS
AAATTTGGCTCGAGACCTTC+GGG 0.366489 5:+102940912 MsG0580029848.01.T01:CDS
TCTTGGTATAATGGGGCAGG+TGG 0.367099 5:+102940688 None:intergenic
TTGGTATAATGGGGCAGGTG+GGG 0.373426 5:+102940690 None:intergenic
TAAGAGCGGAAGAGAAGGTT+AGG 0.373714 5:+102941579 MsG0580029848.01.T01:CDS
CTCCATTCGCTGTCACCAAC+TGG 0.404273 5:-102942768 None:intergenic
AAATATGTGGCGTACTGAAC+TGG 0.419564 5:+102941514 MsG0580029848.01.T01:CDS
AAATGCTGATGCTAGGATAA+AGG 0.420171 5:+102941613 MsG0580029848.01.T01:CDS
CTACATTCTCTGCGGGGATA+GGG 0.443333 5:-102942710 None:intergenic
TTCAACTATAAGAGAAATAG+TGG 0.443914 5:+102940942 MsG0580029848.01.T01:CDS
CTGTCTTGGTATAATGGGGC+AGG 0.446755 5:+102940685 None:intergenic
TTATCCACATTCTCTTCCAT+AGG 0.454302 5:-102942660 None:intergenic
ACTACATTCTCTGCGGGGAT+AGG 0.454768 5:-102942711 None:intergenic
CTGGCTGAATGTTGTTTACC+TGG 0.455370 5:-102942749 None:intergenic
CTTGGTATAATGGGGCAGGT+GGG 0.456186 5:+102940689 None:intergenic
CCTTAATAGCAGCATCTCTC+TGG 0.459863 5:-102941487 None:intergenic
AACACTAAGATTTAAGGATA+AGG 0.472056 5:+102940882 MsG0580029848.01.T01:CDS
TGCAAAGCATGTTGACCCTA+TGG 0.498676 5:+102942644 MsG0580029848.01.T01:CDS
AGCGGCAACAAAAGAGAAGC+AGG 0.505288 5:+102941653 MsG0580029848.01.T01:CDS
AGCCAGTTGGTGACAGCGAA+TGG 0.505367 5:+102942766 MsG0580029848.01.T01:CDS
ATGTGAACTACATTCTCTGC+GGG 0.507461 5:-102942717 None:intergenic
TATCCACATTCTCTTCCATA+GGG 0.520347 5:-102942659 None:intergenic
GGCATTGAATCTAGTGGCAA+AGG 0.531929 5:+102940712 MsG0580029848.01.T01:CDS
TGTAGTAAGAGCGGAAGAGA+AGG 0.536855 5:+102941574 MsG0580029848.01.T01:CDS
CGCAGAGAATGTAGTTCACA+TGG 0.540196 5:+102942719 MsG0580029848.01.T01:CDS
TTGTTGTAGCCAAAGGAGTA+CGG 0.540923 5:+102941419 MsG0580029848.01.T01:intron
CAGGATGAATCAAGTAGGAA+TGG 0.549479 5:+102944106 MsG0580029848.01.T01:intron
AAGAGCGGAAGAGAAGGTTA+GGG 0.550651 5:+102941580 MsG0580029848.01.T01:CDS
TCTTTCAGGATGAATCAAGT+AGG 0.550864 5:+102944101 MsG0580029848.01.T01:intron
GCGGGGATAGGGTTTGCTCT+AGG 0.557770 5:-102942699 None:intergenic
ATGGAGCGATATTCAGGCTA+CGG 0.572173 5:+102942785 MsG0580029848.01.T01:CDS
AGTTCACATGGCAACAGACC+AGG 0.584699 5:+102942731 MsG0580029848.01.T01:CDS
CTGACGCAAATGCTGATGCT+AGG 0.589136 5:+102941606 MsG0580029848.01.T01:CDS
AGAAGCAACTGTAGTAAGAG+CGG 0.589787 5:+102941565 MsG0580029848.01.T01:CDS
ATATTCAGGCTACGGAGGCA+AGG 0.613440 5:+102942793 MsG0580029848.01.T01:CDS
CTATTAAGGAGGCAAATATG+TGG 0.616871 5:+102941501 MsG0580029848.01.T01:CDS
AGCAGATGCTGCTACCTCGA+CGG 0.625233 5:-102940989 None:intergenic
TGACCCTATGGAAGAGAATG+TGG 0.626210 5:+102942656 MsG0580029848.01.T01:CDS
GGTTTGCTCTAGGAACACTT+AGG 0.637637 5:-102942689 None:intergenic
TAGTTGAATCATGTGCCCGA+AGG 0.639829 5:-102940927 None:intergenic
GTAAACAACATTCAGCCAGT+TGG 0.644235 5:+102942753 MsG0580029848.01.T01:CDS
ATGCTCAGTTAGAATCGTTG+AGG 0.655865 5:+102944164 MsG0580029848.01.T01:CDS
GAGAGATGCTGCTATTAAGG+AGG 0.656995 5:+102941490 MsG0580029848.01.T01:CDS
GAGCGATATTCAGGCTACGG+AGG 0.657881 5:+102942788 MsG0580029848.01.T01:CDS
CATGTGAACTACATTCTCTG+CGG 0.678898 5:-102942718 None:intergenic
GAAGCTGTACAGAGAATCAG+CGG 0.682720 5:+102941635 MsG0580029848.01.T01:CDS
TGAGACTGCAGAAGCCGTCG+AGG 0.686393 5:+102940975 MsG0580029848.01.T01:CDS
TGTGAACTACATTCTCTGCG+GGG 0.744904 5:-102942716 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATAATATTTTTTTTAT+TGG + Chr5:102943482-102943501 MsG0580029848.01.T01:intron 0.0%
!! TAAAAATGTATAATATAATG+TGG + Chr5:102943956-102943975 MsG0580029848.01.T01:intron 10.0%
!! AATCAAATGATAGAAAAAAT+TGG + Chr5:102941945-102941964 MsG0580029848.01.T01:intron 15.0%
!! GTAAGAAAAAAATTATACAA+AGG - Chr5:102944069-102944088 None:intergenic 15.0%
!! TACAAAATGTTATCAAATAT+CGG + Chr5:102941269-102941288 MsG0580029848.01.T01:intron 15.0%
!! AAGTACTATATATCAATACT+AGG + Chr5:102942438-102942457 MsG0580029848.01.T01:intron 20.0%
!! AGTACTATATATCAATACTA+GGG + Chr5:102942439-102942458 MsG0580029848.01.T01:intron 20.0%
!! ATATTAGTGTGTATCTATAT+TGG - Chr5:102942291-102942310 None:intergenic 20.0%
!! ATGAAATTTGTAATTAGACA+AGG + Chr5:102940776-102940795 MsG0580029848.01.T01:intron 20.0%
!! TATTTAACAACATTAGCTAA+GGG - Chr5:102941180-102941199 None:intergenic 20.0%
!! TTATGAATCATAAGATACAT+TGG + Chr5:102941820-102941839 MsG0580029848.01.T01:intron 20.0%
!! TTATTTAACCCTAAATTTGA+GGG - Chr5:102943196-102943215 None:intergenic 20.0%
!! TTTATTTAACCCTAAATTTG+AGG - Chr5:102943197-102943216 None:intergenic 20.0%
!!! AATTGTATATTTTGATGTCT+TGG - Chr5:102943907-102943926 None:intergenic 20.0%
!!! ATTACATTTTTGTCAGAAAA+AGG - Chr5:102943097-102943116 None:intergenic 20.0%
!!! ATTCTTCTTTTTGTAAATAC+TGG + Chr5:102944225-102944244 MsG0580029848.01.T01:intron 20.0%
!!! ATTTACTTGATTTTGTGAAA+GGG + Chr5:102943578-102943597 MsG0580029848.01.T01:intron 20.0%
!!! GTTTCTTGTTTAATTTATCT+TGG + Chr5:102944264-102944283 MsG0580029848.01.T01:intron 20.0%
!!! TATTTACTTGATTTTGTGAA+AGG + Chr5:102943577-102943596 MsG0580029848.01.T01:intron 20.0%
! AAAGCAATAAAGAACCATAA+AGG - Chr5:102940826-102940845 None:intergenic 25.0%
! AAATGATAGAAAAAATTGGC+TGG + Chr5:102941949-102941968 MsG0580029848.01.T01:intron 25.0%
! AACACTAAGATTTAAGGATA+AGG + Chr5:102940882-102940901 MsG0580029848.01.T01:CDS 25.0%
! AACATTTAACCCTCAAATTT+AGG + Chr5:102943184-102943203 MsG0580029848.01.T01:intron 25.0%
! AATTAAAAGGAAACTTCAGA+TGG + Chr5:102942462-102942481 MsG0580029848.01.T01:intron 25.0%
! ACATTTAACCCTCAAATTTA+GGG + Chr5:102943185-102943204 MsG0580029848.01.T01:intron 25.0%
! ACCTAATCCAAATATAAAGA+TGG + Chr5:102942415-102942434 MsG0580029848.01.T01:intron 25.0%
! ACGATTGATCATAATAAATC+AGG + Chr5:102942225-102942244 MsG0580029848.01.T01:intron 25.0%
! AGTACTTCCATCTTTATATT+TGG - Chr5:102942425-102942444 None:intergenic 25.0%
! ATAGGAAACACTAAGATTTA+AGG + Chr5:102940876-102940895 MsG0580029848.01.T01:intron 25.0%
! ATATTTGTAGATGCTATCTT+GGG + Chr5:102940800-102940819 MsG0580029848.01.T01:intron 25.0%
! ATCAATACTAGGGAATTAAA+AGG + Chr5:102942449-102942468 MsG0580029848.01.T01:intron 25.0%
! ATGTTTGGTTATTATCATCA+GGG - Chr5:102942939-102942958 None:intergenic 25.0%
! CAATTCTTGAAAAACTGTTT+CGG + Chr5:102941143-102941162 MsG0580029848.01.T01:intron 25.0%
! CTATTTAACAACATTAGCTA+AGG - Chr5:102941181-102941200 None:intergenic 25.0%
! TAAACGCTTAATCAACAAAA+TGG - Chr5:102943005-102943024 None:intergenic 25.0%
! TAGCTAATGTTGTTAAATAG+TGG + Chr5:102941181-102941200 MsG0580029848.01.T01:intron 25.0%
! TATATTTGTAGATGCTATCT+TGG + Chr5:102940799-102940818 MsG0580029848.01.T01:intron 25.0%
! TCCATCTTTATATTTGGATT+AGG - Chr5:102942419-102942438 None:intergenic 25.0%
! TTCAACTATAAGAGAAATAG+TGG + Chr5:102940942-102940961 MsG0580029848.01.T01:CDS 25.0%
! TTTATGGTTCTTTATTGCTT+TGG + Chr5:102940825-102940844 MsG0580029848.01.T01:intron 25.0%
!! ATCTTTATATTTGGATTAGG+TGG - Chr5:102942416-102942435 None:intergenic 25.0%
!! CCTTTAATCGCTTTAAATAA+AGG - Chr5:102943834-102943853 None:intergenic 25.0%
!! CCTTTATTTAAAGCGATTAA+AGG + Chr5:102943831-102943850 MsG0580029848.01.T01:intron 25.0%
!! TCTTTATATTTGGATTAGGT+GGG - Chr5:102942415-102942434 None:intergenic 25.0%
!!! AAAATGCTGTTTTACTCTAT+AGG + Chr5:102940858-102940877 MsG0580029848.01.T01:intron 25.0%
!!! ATCACTGTCTATACTTTTTT+TGG - Chr5:102942170-102942189 None:intergenic 25.0%
!!! ATGTTGAAAATTTTGCTATC+TGG - Chr5:102942965-102942984 None:intergenic 25.0%
!!! CTTCTTGTTATTCACAAATT+TGG + Chr5:102943725-102943744 MsG0580029848.01.T01:intron 25.0%
!!! TAAATTTTTGTTGTAGCCAA+AGG + Chr5:102941412-102941431 MsG0580029848.01.T01:intron 25.0%
AAACAACAAGAAGAAACGAA+AGG - Chr5:102943367-102943386 None:intergenic 30.0%
AACAACAAGAAGAAACGAAA+GGG - Chr5:102943366-102943385 None:intergenic 30.0%
ACACTAATATTCGTATGGAT+TGG + Chr5:102942301-102942320 MsG0580029848.01.T01:intron 30.0%
ACGTAGTAGATAAGAGATAA+AGG - Chr5:102944042-102944061 None:intergenic 30.0%
AGTGATTCATTTGAGTGAAT+TGG + Chr5:102942184-102942203 MsG0580029848.01.T01:intron 30.0%
ATTCACAAATTTGGTCAATG+TGG + Chr5:102943734-102943753 MsG0580029848.01.T01:intron 30.0%
CACTAATATTCGTATGGATT+GGG + Chr5:102942302-102942321 MsG0580029848.01.T01:intron 30.0%
CATGTTTGGTTATTATCATC+AGG - Chr5:102942940-102942959 None:intergenic 30.0%
CGTAGTAGATAAGAGATAAA+GGG - Chr5:102944041-102944060 None:intergenic 30.0%
GAATTGCTCAAATTTCTATC+AGG - Chr5:102941129-102941148 None:intergenic 30.0%
GATACACACTAATATTCGTA+TGG + Chr5:102942296-102942315 MsG0580029848.01.T01:intron 30.0%
GATTTGTATAAATTCCGCTA+CGG - Chr5:102941222-102941241 None:intergenic 30.0%
GTGATTCATTTGAGTGAATT+GGG + Chr5:102942185-102942204 MsG0580029848.01.T01:intron 30.0%
GTGTTATAATTACCCTGAAA+GGG + Chr5:102943067-102943086 MsG0580029848.01.T01:intron 30.0%
TGTGTTATAATTACCCTGAA+AGG + Chr5:102943066-102943085 MsG0580029848.01.T01:intron 30.0%
! ATTAAACCTGTCTAAGATGT+TGG - Chr5:102943435-102943454 None:intergenic 30.0%
! ATTGCTTTCGTCAAAAGTTT+TGG + Chr5:102943606-102943625 MsG0580029848.01.T01:intron 30.0%
! GTTTAATTTCTCTCCTTTCA+TGG + Chr5:102943448-102943467 MsG0580029848.01.T01:intron 30.0%
! TCGCTTTAAATAAAGGTATG+TGG - Chr5:102943827-102943846 None:intergenic 30.0%
! TTAAACCTGTCTAAGATGTT+GGG - Chr5:102943434-102943453 None:intergenic 30.0%
!! CAGTCAAAAGCTATTTTACA+AGG - Chr5:102944007-102944026 None:intergenic 30.0%
AAAGGAAACTTCAGATGGTT+TGG + Chr5:102942467-102942486 MsG0580029848.01.T01:intron 35.0%
AAATGCTGATGCTAGGATAA+AGG + Chr5:102941613-102941632 MsG0580029848.01.T01:CDS 35.0%
AAGAGTTTGATTCATGTCCA+TGG - Chr5:102942908-102942927 None:intergenic 35.0%
AAGCAATTTCCTTCCATGAA+AGG - Chr5:102943464-102943483 None:intergenic 35.0%
AATTTCTCTCCTTTCATGGA+AGG + Chr5:102943452-102943471 MsG0580029848.01.T01:intron 35.0%
ACAACAAGAAGAAACGAAAG+GGG - Chr5:102943365-102943384 None:intergenic 35.0%
AGCTACATTGTTGTCAATTG+CGG - Chr5:102941341-102941360 None:intergenic 35.0%
AGGATCAGTAACAATGAATC+AGG + Chr5:102942245-102942264 MsG0580029848.01.T01:intron 35.0%
ATACAGAGTTGCGAAAAATG+TGG + Chr5:102941974-102941993 MsG0580029848.01.T01:intron 35.0%
ATGCAACACAACTTTGATTG+AGG - Chr5:102943760-102943779 None:intergenic 35.0%
CATCAAAAACTCCGATATTG+CGG + Chr5:102943789-102943808 MsG0580029848.01.T01:intron 35.0%
CGGTTATCAAAATTGCGAAT+CGG + Chr5:102941766-102941785 MsG0580029848.01.T01:intron 35.0%
CTATTAAGGAGGCAAATATG+TGG + Chr5:102941501-102941520 MsG0580029848.01.T01:CDS 35.0%
GAGTACGGAGAAAAAATTAC+GGG + Chr5:102941434-102941453 MsG0580029848.01.T01:CDS 35.0%
GGAGTACGGAGAAAAAATTA+CGG + Chr5:102941433-102941452 MsG0580029848.01.T01:CDS 35.0%
GGATAAGGAGCTTCAAAATT+TGG + Chr5:102940897-102940916 MsG0580029848.01.T01:CDS 35.0%
GTATACCAGCTATGAAATGT+GGG + Chr5:102942520-102942539 MsG0580029848.01.T01:intron 35.0%
TATACCAGCTATGAAATGTG+GGG + Chr5:102942521-102942540 MsG0580029848.01.T01:intron 35.0%
TATCCACATTCTCTTCCATA+GGG - Chr5:102942662-102942681 None:intergenic 35.0%
TCAAGATACACATGTATCGT+AGG + Chr5:102942339-102942358 MsG0580029848.01.T01:intron 35.0%
TCTTTCAGGATGAATCAAGT+AGG + Chr5:102944101-102944120 MsG0580029848.01.T01:intron 35.0%
TGTATACCAGCTATGAAATG+TGG + Chr5:102942519-102942538 MsG0580029848.01.T01:intron 35.0%
TTAACAACATTAGCTAAGGG+TGG - Chr5:102941177-102941196 None:intergenic 35.0%
TTATCCACATTCTCTTCCAT+AGG - Chr5:102942663-102942682 None:intergenic 35.0%
TTGTCAATTGCGGAAAATAG+CGG - Chr5:102941331-102941350 None:intergenic 35.0%
TTTGTTGCTGGAAGAAGAAA+TGG - Chr5:102943338-102943357 None:intergenic 35.0%
! ACGAAAGTGTACTTTCTTTC+AGG + Chr5:102944087-102944106 MsG0580029848.01.T01:intron 35.0%
! TCTAAGATGTTGGGATCTTT+GGG - Chr5:102943425-102943444 None:intergenic 35.0%
! TGCTAAAAGCACAACTTCAA+AGG + Chr5:102941697-102941716 MsG0580029848.01.T01:intron 35.0%
! TTTGCTATCTGGTACATGTT+TGG - Chr5:102942954-102942973 None:intergenic 35.0%
!! CGTTTCTTCTTGTTGTTTCA+GGG + Chr5:102943369-102943388 MsG0580029848.01.T01:intron 35.0%
!! GCTTGAAGCTTTGTTAATCA+CGG + Chr5:102941746-102941765 MsG0580029848.01.T01:intron 35.0%
!! TCGTTTCTTCTTGTTGTTTC+AGG + Chr5:102943368-102943387 MsG0580029848.01.T01:intron 35.0%
!!! ATTTTTTCTCCGTACTCCTT+TGG - Chr5:102941431-102941450 None:intergenic 35.0%
AAATATGTGGCGTACTGAAC+TGG + Chr5:102941514-102941533 MsG0580029848.01.T01:CDS 40.0%
AAGATCCCAACATCTTAGAC+AGG + Chr5:102943426-102943445 MsG0580029848.01.T01:intron 40.0%
AAGCTGCTTCAATCAGTTTC+TGG - Chr5:102942846-102942865 None:intergenic 40.0%
AAGGTATGTGGCCATAATGA+AGG - Chr5:102943815-102943834 None:intergenic 40.0%
AGAAACTGATTGAAGCAGCT+TGG + Chr5:102942845-102942864 MsG0580029848.01.T01:intron 40.0%
AGAAGCAACTGTAGTAAGAG+CGG + Chr5:102941565-102941584 MsG0580029848.01.T01:CDS 40.0%
AGAGCAGAACATTCAGTGTT+TGG - Chr5:102943703-102943722 None:intergenic 40.0%
ATGCTCAGTTAGAATCGTTG+AGG + Chr5:102944164-102944183 MsG0580029848.01.T01:CDS 40.0%
ATGTCTTGGCAAGTTGTGAT+TGG - Chr5:102943893-102943912 None:intergenic 40.0%
ATGTGAACTACATTCTCTGC+GGG - Chr5:102942720-102942739 None:intergenic 40.0%
CAACTTCAAAGGTCAGCATT+TGG + Chr5:102941708-102941727 MsG0580029848.01.T01:intron 40.0%
CAGGATGAATCAAGTAGGAA+TGG + Chr5:102944106-102944125 MsG0580029848.01.T01:intron 40.0%
CATAATGAAGGCCGCAATAT+CGG - Chr5:102943803-102943822 None:intergenic 40.0%
CATGTGAACTACATTCTCTG+CGG - Chr5:102942721-102942740 None:intergenic 40.0%
CGACTCATGATTCCAAAAGT+TGG - Chr5:102941796-102941815 None:intergenic 40.0%
GTAAACAACATTCAGCCAGT+TGG + Chr5:102942753-102942772 MsG0580029848.01.T01:CDS 40.0%
GTTATTATCATCAGGGCTGA+TGG - Chr5:102942932-102942951 None:intergenic 40.0%
GTTGAGGAAAAAACTAGCTG+AGG + Chr5:102944180-102944199 MsG0580029848.01.T01:CDS 40.0%
TCCCACTAGGAAGAATCATT+CGG + Chr5:102942032-102942051 MsG0580029848.01.T01:intron 40.0%
TTGTTGTAGCCAAAGGAGTA+CGG + Chr5:102941419-102941438 MsG0580029848.01.T01:intron 40.0%
TTTGGCAAATGAAAACCTCG+AGG - Chr5:102943685-102943704 None:intergenic 40.0%
! AAAATTTGGCTCGAGACCTT+CGG + Chr5:102940911-102940930 MsG0580029848.01.T01:CDS 40.0%
! AACAGATTCTGAGAAGCAGT+AGG + Chr5:102941069-102941088 MsG0580029848.01.T01:intron 40.0%
! AGCATCTGCTGCTTATACTA+TGG + Chr5:102941002-102941021 MsG0580029848.01.T01:intron 40.0%
! CGAATCGGAATACCAACTTT+TGG + Chr5:102941781-102941800 MsG0580029848.01.T01:intron 40.0%
! GTCTAAGATGTTGGGATCTT+TGG - Chr5:102943426-102943445 None:intergenic 40.0%
! GTTGTCTTCTGAGTTCGTTT+TGG + Chr5:102942489-102942508 MsG0580029848.01.T01:intron 40.0%
! TGTTGCTACTTCCCTTACAT+CGG - Chr5:102942823-102942842 None:intergenic 40.0%
!! AGAAAAAGGTACTCCCTTTC+AGG - Chr5:102943083-102943102 None:intergenic 40.0%
!! GAAAAAGGTACTCCCTTTCA+GGG - Chr5:102943082-102943101 None:intergenic 40.0%
AAGAGCGGAAGAGAAGGTTA+GGG + Chr5:102941580-102941599 MsG0580029848.01.T01:CDS 45.0%
AAGCAGCTTGGATATTCCAG+TGG + Chr5:102942857-102942876 MsG0580029848.01.T01:intron 45.0%
AATGAATGTGCTGTCAGGCT+GGG + Chr5:102944287-102944306 MsG0580029848.01.T01:intron 45.0%
AGAGTTGCGAAAAATGTGGC+AGG + Chr5:102941978-102941997 MsG0580029848.01.T01:intron 45.0%
AGATGTTGGGATCTTTGGGT+AGG - Chr5:102943421-102943440 None:intergenic 45.0%
ATGGAGCGATATTCAGGCTA+CGG + Chr5:102942785-102942804 MsG0580029848.01.T01:CDS 45.0%
CAAGAAGAAACGAAAGGGGT+TGG - Chr5:102943361-102943380 None:intergenic 45.0%
CCAGAGAGATGCTGCTATTA+AGG + Chr5:102941487-102941506 MsG0580029848.01.T01:CDS 45.0%
CCAGGTATCAATCATCACCA+TGG + Chr5:102942888-102942907 MsG0580029848.01.T01:intron 45.0%
CCCACTAGGAAGAATCATTC+GGG + Chr5:102942033-102942052 MsG0580029848.01.T01:intron 45.0%
CCCGAATGATTCTTCCTAGT+GGG - Chr5:102942036-102942055 None:intergenic 45.0%
CCTTAATAGCAGCATCTCTC+TGG - Chr5:102941490-102941509 None:intergenic 45.0%
CGATATTGCGGCCTTCATTA+TGG + Chr5:102943801-102943820 MsG0580029848.01.T01:intron 45.0%
CGCAGAGAATGTAGTTCACA+TGG + Chr5:102942719-102942738 MsG0580029848.01.T01:CDS 45.0%
CTTGGAATGAATGTGCTGTC+AGG + Chr5:102944282-102944301 MsG0580029848.01.T01:intron 45.0%
GAAGCTGTACAGAGAATCAG+CGG + Chr5:102941635-102941654 MsG0580029848.01.T01:CDS 45.0%
GAGAGATGCTGCTATTAAGG+AGG + Chr5:102941490-102941509 MsG0580029848.01.T01:CDS 45.0%
GATACCCCACATTTCATAGC+TGG - Chr5:102942528-102942547 None:intergenic 45.0%
GATCAAAAGCTCGCTGCTTA+GGG + Chr5:102943628-102943647 MsG0580029848.01.T01:intron 45.0%
GATGCTATCTTGGGCCTTTA+TGG + Chr5:102940809-102940828 MsG0580029848.01.T01:intron 45.0%
GCTATAGTGCTATACCGTAG+CGG + Chr5:102941205-102941224 MsG0580029848.01.T01:intron 45.0%
TAAGAGCGGAAGAGAAGGTT+AGG + Chr5:102941579-102941598 MsG0580029848.01.T01:CDS 45.0%
TAGTTGAATCATGTGCCCGA+AGG - Chr5:102940930-102940949 None:intergenic 45.0%
TCCCGAATGATTCTTCCTAG+TGG - Chr5:102942037-102942056 None:intergenic 45.0%
TGACCCTATGGAAGAGAATG+TGG + Chr5:102942656-102942675 MsG0580029848.01.T01:CDS 45.0%
TGCAAAGCATGTTGACCCTA+TGG + Chr5:102942644-102942663 MsG0580029848.01.T01:CDS 45.0%
TGTAGTAAGAGCGGAAGAGA+AGG + Chr5:102941574-102941593 MsG0580029848.01.T01:CDS 45.0%
TGTGAACTACATTCTCTGCG+GGG - Chr5:102942719-102942738 None:intergenic 45.0%
TGTTAACCCTCCAGTTCCTA+GGG - Chr5:102942147-102942166 None:intergenic 45.0%
TTGGGATCTTTGGGTAGGTT+CGG - Chr5:102943416-102943435 None:intergenic 45.0%
! AAATTTGGCTCGAGACCTTC+GGG + Chr5:102940912-102940931 MsG0580029848.01.T01:CDS 45.0%
! AGATTCTGAGAAGCAGTAGG+AGG + Chr5:102941072-102941091 MsG0580029848.01.T01:intron 45.0%
! CACAGTTTTTCTCTTCCTCG+AGG + Chr5:102943667-102943686 MsG0580029848.01.T01:intron 45.0%
! CCATGGTGATGATTGATACC+TGG - Chr5:102942891-102942910 None:intergenic 45.0%
! CTGGCTGAATGTTGTTTACC+TGG - Chr5:102942752-102942771 None:intergenic 45.0%
! GGCATTGAATCTAGTGGCAA+AGG + Chr5:102940712-102940731 MsG0580029848.01.T01:CDS 45.0%
!! GGTTTGCTCTAGGAACACTT+AGG - Chr5:102942692-102942711 None:intergenic 45.0%
!! AATTTAAATTAATCTAATTA+GGG + Chr5:102943519-102943538 MsG0580029848.01.T01:intron 5.0%
!! TAATTTAAATTAATCTAATT+AGG + Chr5:102943518-102943537 MsG0580029848.01.T01:intron 5.0%
!!! TTTTTTTTTTAATTTTTAAC+AGG + Chr5:102942576-102942595 MsG0580029848.01.T01:intron 5.0%
ACTACATTCTCTGCGGGGAT+AGG - Chr5:102942714-102942733 None:intergenic 50.0%
AGCGGCAACAAAAGAGAAGC+AGG + Chr5:102941653-102941672 MsG0580029848.01.T01:CDS 50.0%
AGGCAAGGATAGCCGATGTA+AGG + Chr5:102942808-102942827 MsG0580029848.01.T01:intron 50.0%
AGTTCACATGGCAACAGACC+AGG + Chr5:102942731-102942750 MsG0580029848.01.T01:CDS 50.0%
ATATTCAGGCTACGGAGGCA+AGG + Chr5:102942793-102942812 MsG0580029848.01.T01:CDS 50.0%
CAGCGAATGGAGCGATATTC+AGG + Chr5:102942779-102942798 MsG0580029848.01.T01:CDS 50.0%
CCCAGACTTTACTTACCTCC+CGG + Chr5:102942093-102942112 MsG0580029848.01.T01:intron 50.0%
CCGGGAGGTAAGTAAAGTCT+GGG - Chr5:102942096-102942115 None:intergenic 50.0%
CTACATTCTCTGCGGGGATA+GGG - Chr5:102942713-102942732 None:intergenic 50.0%
CTGACGCAAATGCTGATGCT+AGG + Chr5:102941606-102941625 MsG0580029848.01.T01:CDS 50.0%
GAATGAATGTGCTGTCAGGC+TGG + Chr5:102944286-102944305 MsG0580029848.01.T01:intron 50.0%
GCGATTAATGAGCTCCCACT+AGG + Chr5:102942019-102942038 MsG0580029848.01.T01:intron 50.0%
GGATCAAAAGCTCGCTGCTT+AGG + Chr5:102943627-102943646 MsG0580029848.01.T01:intron 50.0%
GGCAAGGATAGCCGATGTAA+GGG + Chr5:102942809-102942828 MsG0580029848.01.T01:intron 50.0%
GGTGATGATTGATACCTGGC+TGG - Chr5:102942887-102942906 None:intergenic 50.0%
GTGTTAACCCTCCAGTTCCT+AGG - Chr5:102942148-102942167 None:intergenic 50.0%
GTTAACCCTCCAGTTCCTAG+GGG - Chr5:102942146-102942165 None:intergenic 50.0%
TTCCCACCAGGAATCGAACT+CGG - Chr5:102942064-102942083 None:intergenic 50.0%
! AGCAGTAGGAGGTGTATGCA+CGG + Chr5:102941083-102941102 MsG0580029848.01.T01:intron 50.0%
!! GAAAGGGGTTGGTTTGTTGC+TGG - Chr5:102943350-102943369 None:intergenic 50.0%
AACCCGAGTTCGATTCCTGG+TGG + Chr5:102942058-102942077 MsG0580029848.01.T01:intron 55.0%
ACCCGAGTTCGATTCCTGGT+GGG + Chr5:102942059-102942078 MsG0580029848.01.T01:intron 55.0%
AGCAGATGCTGCTACCTCGA+CGG - Chr5:102940992-102941011 None:intergenic 55.0%
AGGTTCGGCAATGAGCTTGG+TGG - Chr5:102943401-102943420 None:intergenic 55.0%
CTCCATTCGCTGTCACCAAC+TGG - Chr5:102942771-102942790 None:intergenic 55.0%
GAGAACCCGAGTTCGATTCC+TGG + Chr5:102942055-102942074 MsG0580029848.01.T01:intron 55.0%
GAGCGATATTCAGGCTACGG+AGG + Chr5:102942788-102942807 MsG0580029848.01.T01:CDS 55.0%
GCCGGGAGGTAAGTAAAGTC+TGG - Chr5:102942097-102942116 None:intergenic 55.0%
GGGCAAGAATTGTTCCCACC+AGG - Chr5:102942076-102942095 None:intergenic 55.0%
GGTAGGTTCGGCAATGAGCT+TGG - Chr5:102943404-102943423 None:intergenic 55.0%
TCCCACCAGGAATCGAACTC+GGG - Chr5:102942063-102942082 None:intergenic 55.0%
! ATACCTGGCTGGCTAACCAC+TGG - Chr5:102942876-102942895 None:intergenic 55.0%
! ATTCCAGTGGTTAGCCAGCC+AGG + Chr5:102942870-102942889 MsG0580029848.01.T01:intron 55.0%
! GTAGGAGGTGTATGCACGGA+AGG + Chr5:102941087-102941106 MsG0580029848.01.T01:intron 55.0%
!! AGCCAGTTGGTGACAGCGAA+TGG + Chr5:102942766-102942785 MsG0580029848.01.T01:CDS 55.0%
!! GGTGGGGGCATTGAATCTAG+TGG + Chr5:102940706-102940725 MsG0580029848.01.T01:CDS 55.0%
ACCCTCCAGTTCCTAGGGGA+AGG - Chr5:102942142-102942161 None:intergenic 60.0%
CCCTCCAGTTCCTAGGGGAA+GGG - Chr5:102942141-102942160 None:intergenic 60.0%
CCCTTCCCCTAGGAACTGGA+GGG + Chr5:102942138-102942157 MsG0580029848.01.T01:intron 60.0%
CCTCCAGTTCCTAGGGGAAG+GGG - Chr5:102942140-102942159 None:intergenic 60.0%
CTAGTGATCCGGAGTTCGGC+CGG - Chr5:102942115-102942134 None:intergenic 60.0%
GGCCCTAGTGATCCGGAGTT+CGG - Chr5:102942119-102942138 None:intergenic 60.0%
GGCCGAACTCCGGATCACTA+GGG + Chr5:102942114-102942133 MsG0580029848.01.T01:intron 60.0%
TAGTGATCCGGAGTTCGGCC+GGG - Chr5:102942114-102942133 None:intergenic 60.0%
TGAGACTGCAGAAGCCGTCG+AGG + Chr5:102940975-102940994 MsG0580029848.01.T01:CDS 60.0%
! GCGGGGATAGGGTTTGCTCT+AGG - Chr5:102942702-102942721 None:intergenic 60.0%
CCCCTTCCCCTAGGAACTGG+AGG + Chr5:102942137-102942156 MsG0580029848.01.T01:intron 65.0%
CGGCCGAACTCCGGATCACT+AGG + Chr5:102942113-102942132 MsG0580029848.01.T01:intron 65.0%
CTTACCTCCCGGCCGAACTC+CGG + Chr5:102942104-102942123 MsG0580029848.01.T01:intron 65.0%
GGGAAGGGGCCCTAGTGATC+CGG - Chr5:102942126-102942145 None:intergenic 65.0%
TCACTAGGGCCCCTTCCCCT+AGG + Chr5:102942128-102942147 MsG0580029848.01.T01:intron 65.0%
GGGCCCCTTCCCCTAGGAAC+TGG + Chr5:102942134-102942153 MsG0580029848.01.T01:intron 70.0%
TGATCCGGAGTTCGGCCGGG+AGG - Chr5:102942111-102942130 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 102940698 102944354 102940698 ID=MsG0580029848.01;Name=MsG0580029848.01
Chr5 mRNA 102940698 102944354 102940698 ID=MsG0580029848.01.T01;Parent=MsG0580029848.01;Name=MsG0580029848.01.T01;_AED=0.42;_eAED=0.45;_QI=0|0|0|1|1|1|6|0|261
Chr5 exon 102940698 102940733 102940698 ID=MsG0580029848.01.T01:exon:6999;Parent=MsG0580029848.01.T01
Chr5 exon 102940880 102940996 102940880 ID=MsG0580029848.01.T01:exon:7000;Parent=MsG0580029848.01.T01
Chr5 exon 102941428 102941689 102941428 ID=MsG0580029848.01.T01:exon:7001;Parent=MsG0580029848.01.T01
Chr5 exon 102942598 102942824 102942598 ID=MsG0580029848.01.T01:exon:7002;Parent=MsG0580029848.01.T01
Chr5 exon 102944109 102944201 102944109 ID=MsG0580029848.01.T01:exon:7003;Parent=MsG0580029848.01.T01
Chr5 exon 102944304 102944354 102944304 ID=MsG0580029848.01.T01:exon:7004;Parent=MsG0580029848.01.T01
Chr5 CDS 102940698 102940733 102940698 ID=MsG0580029848.01.T01:cds;Parent=MsG0580029848.01.T01
Chr5 CDS 102940880 102940996 102940880 ID=MsG0580029848.01.T01:cds;Parent=MsG0580029848.01.T01
Chr5 CDS 102941428 102941689 102941428 ID=MsG0580029848.01.T01:cds;Parent=MsG0580029848.01.T01
Chr5 CDS 102942598 102942824 102942598 ID=MsG0580029848.01.T01:cds;Parent=MsG0580029848.01.T01
Chr5 CDS 102944109 102944201 102944109 ID=MsG0580029848.01.T01:cds;Parent=MsG0580029848.01.T01
Chr5 CDS 102944304 102944354 102944304 ID=MsG0580029848.01.T01:cds;Parent=MsG0580029848.01.T01
Gene Sequence

>MsG0580029848.01.T01

ATGGGGCAGGTGGGGGCATTGAATCTAGTGGCAAAGGAAACACTAAGATTTAAGGATAAGGAGCTTCAAAATTTGGCTCGAGACCTTCGGGCACATGATTCAACTATAAGAGAAATAGTGGATAAATCATCTGAGACTGCAGAAGCCGTCGAGCCAAAGGAGTACGGAGAAAAAATTACGGGCTTAAGCAAAGAAAGAGAGCAATTAACTGACCAGAGAGATGCTGCTATTAAGGAGGCAAATATGTGGCGTACTGAACTGGCAAAAGCTAGAGAGCATGATGTGATCTTAGAAGCAACTGTAGTAAGAGCGGAAGAGAAGGTTAGGGTTGCTGACGCAAATGCTGATGCTAGGATAAAGGAAGCTGTACAGAGAATCAGCGGCAACAAAAGAGAAGCAGGAACTGCTTGCATATGCAACACATTGATGCAACTCAAGTTGAGAAGAGAGTCATGCTCAGATGCAAAGCATGTTGACCCTATGGAAGAGAATGTGGATAAAGCGTGCCTAAGTGTTCCTAGAGCAAACCCTATCCCCGCAGAGAATGTAGTTCACATGGCAACAGACCAGGTAAACAACATTCAGCCAGTTGGTGACAGCGAATGGAGCGATATTCAGGCTACGGAGGCAAGGATAGCCGATGATGAATCAAGTAGGAATGGCATCAATCATGTTGCTACTTCTGATTCAGAACTCGATGCTCAGTTAGAATCGTTGAGGAAAAAACTAGCTGAGGCTGGGAAAGAGTCAGAAATGCTGAATCAAGACATTCATGTAATATCATAG
Protein sequence

>MsG0580029848.01.T01

MGQVGALNLVAKETLRFKDKELQNLARDLRAHDSTIREIVDKSSETAEAVEPKEYGEKITGLSKEREQLTDQRDAAIKEANMWRTELAKAREHDVILEATVVRAEEKVRVADANADARIKEAVQRISGNKREAGTACICNTLMQLKLRRESCSDAKHVDPMEENVDKACLSVPRANPIPAENVVHMATDQVNNIQPVGDSEWSDIQATEARIADDESSRNGINHVATSDSELDAQLESLRKKLAEAGKESEMLNQDIHVIS*