AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029863.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029863.01.T01 MTR_5g093840 87.795 254 21 2 74 327 182 425 1.09e-155 443
MsG0580029863.01.T01 MTR_5g093840 91.597 119 10 0 1 119 1 119 6.69e-71 226
MsG0580029863.01.T01 MTR_2g025550 67.742 248 70 2 74 321 200 437 7.80e-119 350
MsG0580029863.01.T01 MTR_2g025550 62.931 116 41 2 19 133 19 133 6.32e-37 137
MsG0580029863.01.T01 MTR_2g025550 67.742 248 70 2 74 321 239 476 3.57e-118 349
MsG0580029863.01.T01 MTR_2g025550 65.455 110 36 2 19 126 75 184 1.06e-36 137
MsG0580029863.01.T01 MTR_2g025550 67.742 248 70 2 74 321 326 563 5.61e-117 349
MsG0580029863.01.T01 MTR_2g025550 65.455 110 36 2 19 126 162 271 1.95e-36 138
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029863.01.T01 AT4G26770 68.675 249 68 2 74 322 228 466 1.60e-118 350
MsG0580029863.01.T01 AT4G26770 59.130 115 44 1 8 119 51 165 3.95e-32 125
MsG0580029863.01.T01 AT4G22340 67.068 249 72 2 74 322 123 361 1.06e-117 344
MsG0580029863.01.T01 AT4G22340 38.525 122 65 3 60 179 1 114 9.68e-16 77.4
MsG0580029863.01.T01 AT4G22340 67.068 249 72 2 74 322 181 419 6.59e-117 344
MsG0580029863.01.T01 AT4G22340 41.176 170 90 3 12 179 11 172 8.64e-32 123
MsG0580029863.01.T01 AT4G22340 67.068 249 72 2 74 322 205 443 1.04e-116 345
MsG0580029863.01.T01 AT4G22340 41.176 170 90 3 12 179 35 196 1.11e-31 123
MsG0580029863.01.T01 AT1G62430 66.667 249 73 2 74 322 181 419 1.09e-116 343
MsG0580029863.01.T01 AT1G62430 57.627 118 47 2 4 118 1 118 4.34e-33 127

Find 73 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATCTTTGGTTTCTTCTT+TGG 0.119723 5:-103085656 MsG0580029863.01.T01:CDS
CCATTTGATTTGCTTATTTC+AGG 0.133757 5:+103086574 None:intergenic
TGTCTCACTTATCATATATA+TGG 0.178132 5:-103086470 MsG0580029863.01.T01:CDS
TCCTCCAAATGGTGCTATTA+TGG 0.225386 5:+103085038 None:intergenic
TTTATCATTTACAAGTAAAA+TGG 0.230481 5:+103086549 None:intergenic
CTATTCCATTGATGTGCTTT+TGG 0.238095 5:-103084623 MsG0580029863.01.T01:CDS
GCTCACTAGCCATAAATATT+TGG 0.263279 5:+103086413 None:intergenic
AACTATGATTGCGGCATTTA+CGG 0.265505 5:-103085567 MsG0580029863.01.T01:intron
GGTTGTGATCCAAATATTTA+TGG 0.272297 5:-103086422 MsG0580029863.01.T01:CDS
ATCAAAATTGTTACCTTCCT+TGG 0.277401 5:+103085401 None:intergenic
ATATCTTTGGTTTCTTCTTT+GGG 0.282779 5:-103085655 MsG0580029863.01.T01:CDS
GATGTTGCTGCATATATCTT+TGG 0.294827 5:-103085668 MsG0580029863.01.T01:CDS
CGTCTTCTGTGCCGAAAATT+TGG 0.313617 5:+103086756 None:intergenic
TGCCAGGATTTGTTTCTCAT+TGG 0.360407 5:-103085230 MsG0580029863.01.T01:CDS
TAAATTCAGGATTTATCAAC+TGG 0.366607 5:-103085303 MsG0580029863.01.T01:intron
GTCAGTAAATCCGCCATGTC+CGG 0.371687 5:+103084855 None:intergenic
CAATTCAAGAGCTTAAACTT+AGG 0.381017 5:+103086349 None:intergenic
ATATGGGTCATCTTTACATC+TGG 0.383139 5:-103086453 MsG0580029863.01.T01:CDS
GCCAGGATTTGTTTCTCATT+GGG 0.385327 5:-103085229 MsG0580029863.01.T01:intron
TACGTGCATATTCATCTCTA+TGG 0.390411 5:-103086504 MsG0580029863.01.T01:CDS
AGAGATTTGAACGCGGATAA+TGG 0.391421 5:-103086798 MsG0580029863.01.T01:CDS
CTAAGTTTAAGCTCTTGAAT+TGG 0.396460 5:-103086348 MsG0580029863.01.T01:intron
GTCTCACTTATCATATATAT+GGG 0.407801 5:-103086469 MsG0580029863.01.T01:CDS
TTCATAGCAATTAGAGATGC+AGG 0.414438 5:+103085692 None:intergenic
CTGGCTCTTTATACAAGACT+TGG 0.421763 5:-103084265 MsG0580029863.01.T01:CDS
GCATCCATAATAGCACCATT+TGG 0.424487 5:-103085042 MsG0580029863.01.T01:CDS
AATTCAAGAGCTTAAACTTA+GGG 0.425473 5:+103086350 None:intergenic
TATTTATCGTGTAGATAATG+AGG 0.475038 5:-103084309 MsG0580029863.01.T01:intron
CACAAGGCATGCCACTGTAC+TGG 0.476069 5:+103085078 None:intergenic
TGAGAAACAAATCCTGGCAT+TGG 0.478243 5:+103085234 None:intergenic
CTGGTCCAAAAGCACATCAA+TGG 0.489153 5:+103084618 None:intergenic
AAAACTGCTATCTCTTTCTC+AGG 0.492920 5:+103085102 None:intergenic
TTCAGGATTTATCAACTGGT+TGG 0.495032 5:-103085299 MsG0580029863.01.T01:intron
TACTGACAGAATGGACTGCC+AGG 0.495311 5:-103084839 MsG0580029863.01.T01:intron
TCACAATGAATCCAGGACTT+TGG 0.497441 5:-103084889 MsG0580029863.01.T01:intron
CCTGAAATAAGCAAATCAAA+TGG 0.501072 5:-103086574 MsG0580029863.01.T01:CDS
CAGTGGCATGCCTTGTGGCT+AGG 0.503564 5:-103085072 MsG0580029863.01.T01:CDS
TCAGTAAATCCGCCATGTCC+GGG 0.510367 5:+103084856 None:intergenic
GCACATCAATGGAATAGTCA+TGG 0.530908 5:+103084629 None:intergenic
CCAGAGTACATTCCAATGCC+AGG 0.534734 5:-103085246 MsG0580029863.01.T01:CDS
GACTTTGGTGACAGTATACC+CGG 0.535621 5:-103084874 MsG0580029863.01.T01:CDS
ACCCAATGAGAAACAAATCC+TGG 0.538297 5:+103085228 None:intergenic
TCATCTTTACATCTGGGCCA+TGG 0.540803 5:-103086446 MsG0580029863.01.T01:CDS
CCTGGCATTGGAATGTACTC+TGG 0.544800 5:+103085246 None:intergenic
TATGGGTCATCTTTACATCT+GGG 0.546500 5:-103086452 MsG0580029863.01.T01:CDS
CACATCAATGGAATAGTCAT+GGG 0.546612 5:+103084630 None:intergenic
TCCATAATAGCACCATTTGG+AGG 0.552514 5:-103085039 MsG0580029863.01.T01:CDS
AGTTATCTCCAAAGAAAACA+TGG 0.555418 5:-103085616 MsG0580029863.01.T01:CDS
TGGCTCTTTATACAAGACTT+GGG 0.563969 5:-103084264 MsG0580029863.01.T01:CDS
TGGCGGATTTACTGACAGAA+TGG 0.565482 5:-103084848 MsG0580029863.01.T01:CDS
TTTGATTTGCTTATTTCAGG+AGG 0.569134 5:+103086577 None:intergenic
TGCAAATAGTCCTAGCCACA+AGG 0.575245 5:+103085062 None:intergenic
TTTGGAGATAACTTGATCAG+AGG 0.582561 5:+103085626 None:intergenic
TTGGGCAGATATTACATGAA+AGG 0.587460 5:-103084246 MsG0580029863.01.T01:CDS
GCACAGAAGACGCTCAAATG+AGG 0.591299 5:-103086745 MsG0580029863.01.T01:intron
TTGGTTAACATGTCCAAGGA+AGG 0.592587 5:-103085414 MsG0580029863.01.T01:intron
TCAATTGGTTAACATGTCCA+AGG 0.594919 5:-103085418 MsG0580029863.01.T01:CDS
CAGTACAGTGGCATGCCTTG+TGG 0.598019 5:-103085077 MsG0580029863.01.T01:CDS
TCTCCAAAGAAAACATGGGA+AGG 0.598493 5:-103085611 MsG0580029863.01.T01:CDS
ATCTGTTGCAACTATGATTG+CGG 0.605028 5:-103085576 MsG0580029863.01.T01:CDS
ATTTATCGTGTAGATAATGA+GGG 0.606351 5:-103084308 MsG0580029863.01.T01:intron
GTGTAGATAATGAGGGACCT+TGG 0.610857 5:-103084301 MsG0580029863.01.T01:intron
TCATAGCAATTAGAGATGCA+GGG 0.627899 5:+103085693 None:intergenic
GTTATCTCCAAAGAAAACAT+GGG 0.639983 5:-103085615 MsG0580029863.01.T01:CDS
ACATCAATGGAATAGTCATG+GGG 0.665523 5:+103084631 None:intergenic
CCAGCTGCTCCTCAAAACCA+AGG 0.668117 5:+103084284 None:intergenic
GGTGACAGTATACCCGGACA+TGG 0.671646 5:-103084868 MsG0580029863.01.T01:CDS
AATATAAATACAGATCAATG+TGG 0.671994 5:-103086528 MsG0580029863.01.T01:CDS
TCTTTACATCTGGGCCATGG+TGG 0.672770 5:-103086443 MsG0580029863.01.T01:CDS
TATTTGGATCACAACCACCA+TGG 0.676321 5:+103086429 None:intergenic
GACAGTATACCCGGACATGG+CGG 0.710387 5:-103084865 MsG0580029863.01.T01:CDS
CATCAATGGAATAGTCATGG+GGG 0.748679 5:+103084632 None:intergenic
AACAATGAGAGATTTGAACG+CGG 0.749923 5:-103086805 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGAATTTATTATACTAT+AGG + Chr5:103085007-103085026 None:intergenic 10.0%
!! AATGAATTTATTATACTATA+GGG + Chr5:103085006-103085025 None:intergenic 10.0%
!! CACTGATAATAATTTAAAAA+TGG - Chr5:103086590-103086609 MsG0580029863.01.T01:intron 15.0%
!! TTCAATCATGTAAAAATTAA+AGG - Chr5:103086470-103086489 MsG0580029863.01.T01:CDS 15.0%
!! TTTATCATTTACAAGTAAAA+TGG + Chr5:103084483-103084502 None:intergenic 15.0%
!! AATATAAATACAGATCAATG+TGG - Chr5:103084501-103084520 MsG0580029863.01.T01:intron 20.0%
!! AGATACTACAAATATCAATT+TGG - Chr5:103085089-103085108 MsG0580029863.01.T01:CDS 20.0%
!! ATAGATTATCAACAAACATT+AGG + Chr5:103085699-103085718 None:intergenic 20.0%
!! CAAACTATTTGATAAGATAT+TGG - Chr5:103085522-103085541 MsG0580029863.01.T01:intron 20.0%
!! TTGAAAACTGTACAATAAAT+TGG + Chr5:103086455-103086474 None:intergenic 20.0%
!!! ACATGTTAACATTATTTTGA+AGG - Chr5:103085305-103085324 MsG0580029863.01.T01:intron 20.0%
!!! ATATATTTCAAGGAATTTTC+TGG - Chr5:103085177-103085196 MsG0580029863.01.T01:intron 20.0%
!!! GTTTAATTTTGGTATTTTGA+TGG - Chr5:103084402-103084421 MsG0580029863.01.T01:intron 20.0%
!!! TAAGTGAAGATGTTTAATTT+TGG - Chr5:103084391-103084410 MsG0580029863.01.T01:intron 20.0%
!!! TAATGTTTGTTGATAATCTA+TGG - Chr5:103085698-103085717 MsG0580029863.01.T01:CDS 20.0%
! AACAGGAAATGATTTAAATC+AGG - Chr5:103086266-103086285 MsG0580029863.01.T01:intron 25.0%
! AAGATATTGGAATAACAAAC+TGG - Chr5:103085535-103085554 MsG0580029863.01.T01:intron 25.0%
! AATATATTCATATGTACGAG+AGG - Chr5:103084347-103084366 MsG0580029863.01.T01:intron 25.0%
! AATTCAAGAGCTTAAACTTA+GGG + Chr5:103084682-103084701 None:intergenic 25.0%
! ATGATTTACATTCAATTTCC+AGG + Chr5:103086660-103086679 None:intergenic 25.0%
! ATTTATCGTGTAGATAATGA+GGG - Chr5:103086721-103086740 MsG0580029863.01.T01:intron 25.0%
! CAACTTAACATTTGATTGTT+TGG + Chr5:103086538-103086557 None:intergenic 25.0%
! CTCGTACATATGAATATATT+TGG + Chr5:103084347-103084366 None:intergenic 25.0%
! GTCTCACTTATCATATATAT+GGG - Chr5:103084560-103084579 MsG0580029863.01.T01:intron 25.0%
! TAAATTCAGGATTTATCAAC+TGG - Chr5:103085726-103085745 MsG0580029863.01.T01:intron 25.0%
! TATTTATCGTGTAGATAATG+AGG - Chr5:103086720-103086739 MsG0580029863.01.T01:intron 25.0%
! TGAATGCATGAAGAATATAA+TGG + Chr5:103085265-103085284 None:intergenic 25.0%
! TGATTTACATTCAATTTCCA+GGG + Chr5:103086659-103086678 None:intergenic 25.0%
! TGTCTCACTTATCATATATA+TGG - Chr5:103084559-103084578 MsG0580029863.01.T01:intron 25.0%
!! ATATCTTTGGTTTCTTCTTT+GGG - Chr5:103085374-103085393 MsG0580029863.01.T01:intron 25.0%
!! ATCTTTTCATGTATGATTTC+AGG - Chr5:103085035-103085054 MsG0580029863.01.T01:CDS 25.0%
!! GTTTTACTTGTATGATTTCA+GGG - Chr5:103084976-103084995 MsG0580029863.01.T01:intron 25.0%
!! TATATCTTTGGTTTCTTCTT+TGG - Chr5:103085373-103085392 MsG0580029863.01.T01:intron 25.0%
!! TGTTACTTCTTATATATTGC+AGG - Chr5:103084936-103084955 MsG0580029863.01.T01:intron 25.0%
!! TGTTTTACTTGTATGATTTC+AGG - Chr5:103084975-103084994 MsG0580029863.01.T01:intron 25.0%
!! TTTTACACTAGAATAATCCT+TGG - Chr5:103086233-103086252 MsG0580029863.01.T01:intron 25.0%
!!! CAAAAGAGCTTTTAAAATCA+AGG - Chr5:103086031-103086050 MsG0580029863.01.T01:intron 25.0%
!!! TATCAAATAGTTTGCTTTCA+TGG + Chr5:103085516-103085535 None:intergenic 25.0%
!!! TGTTATGCATATTTTTCAGA+TGG - Chr5:103086331-103086350 MsG0580029863.01.T01:intron 25.0%
!!! TTTTGGAGTTTTAAAGTGAA+AGG + Chr5:103086105-103086124 None:intergenic 25.0%
AAATGTATATGTGTCAGTCT+CGG - Chr5:103086621-103086640 MsG0580029863.01.T01:intron 30.0%
AATATATCTATGTGCAAACC+TGG + Chr5:103086211-103086230 None:intergenic 30.0%
ACGGTAGCTAATATATTTCA+AGG - Chr5:103085167-103085186 MsG0580029863.01.T01:intron 30.0%
AGTTATCTCCAAAGAAAACA+TGG - Chr5:103085413-103085432 MsG0580029863.01.T01:intron 30.0%
ATCAAAATTGTTACCTTCCT+TGG + Chr5:103085631-103085650 None:intergenic 30.0%
ATCTATGGTGCAATAAATTC+AGG - Chr5:103085713-103085732 MsG0580029863.01.T01:intron 30.0%
ATTTGAAAACAACAATGTCC+AGG - Chr5:103084784-103084803 MsG0580029863.01.T01:intron 30.0%
CAATTCAAGAGCTTAAACTT+AGG + Chr5:103084683-103084702 None:intergenic 30.0%
CATAAGTGTATGTGTTACAT+AGG - Chr5:103086677-103086696 MsG0580029863.01.T01:intron 30.0%
CCTGAAATAAGCAAATCAAA+TGG - Chr5:103084455-103084474 MsG0580029863.01.T01:intron 30.0%
CTAAGTTTAAGCTCTTGAAT+TGG - Chr5:103084681-103084700 MsG0580029863.01.T01:CDS 30.0%
GGTTGTGATCCAAATATTTA+TGG - Chr5:103084607-103084626 MsG0580029863.01.T01:intron 30.0%
GTATGTTCTTGATCATAGTA+GGG - Chr5:103086053-103086072 MsG0580029863.01.T01:intron 30.0%
GTTAAACAAAAAAACTCACC+TGG + Chr5:103086433-103086452 None:intergenic 30.0%
GTTATCTCCAAAGAAAACAT+GGG - Chr5:103085414-103085433 MsG0580029863.01.T01:intron 30.0%
TGAAGTCACATAAGATTAAG+AGG - Chr5:103085655-103085674 MsG0580029863.01.T01:CDS 30.0%
TTGCAAACTGCACAAATAAT+GGG + Chr5:103085576-103085595 None:intergenic 30.0%
TTTGCAAACTGCACAAATAA+TGG + Chr5:103085577-103085596 None:intergenic 30.0%
! ATGTACTCTGGCTTAAAAAT+TGG + Chr5:103085774-103085793 None:intergenic 30.0%
! CACCAAAAACACCAAATTTT+CGG - Chr5:103084262-103084281 MsG0580029863.01.T01:CDS 30.0%
! TGTACTCTGGCTTAAAAATT+GGG + Chr5:103085773-103085792 None:intergenic 30.0%
!! AAAACATGGGAAGGTTTTAT+TGG - Chr5:103085427-103085446 MsG0580029863.01.T01:CDS 30.0%
!! CCATTTGATTTGCTTATTTC+AGG + Chr5:103084458-103084477 None:intergenic 30.0%
!! TTTGATTTGCTTATTTCAGG+AGG + Chr5:103084455-103084474 None:intergenic 30.0%
!!! GTATGATTTCAGGTTTTGTA+TGG - Chr5:103085045-103085064 MsG0580029863.01.T01:CDS 30.0%
AAAACTGCTATCTCTTTCTC+AGG + Chr5:103085930-103085949 None:intergenic 35.0%
AACTATGATTGCGGCATTTA+CGG - Chr5:103085462-103085481 MsG0580029863.01.T01:intron 35.0%
ACATCAATGGAATAGTCATG+GGG + Chr5:103086401-103086420 None:intergenic 35.0%
AGTGTATGTGTTACATAGGT+CGG - Chr5:103086681-103086700 MsG0580029863.01.T01:intron 35.0%
ATATGGGTCATCTTTACATC+TGG - Chr5:103084576-103084595 MsG0580029863.01.T01:intron 35.0%
ATCTGTTGCAACTATGATTG+CGG - Chr5:103085453-103085472 MsG0580029863.01.T01:intron 35.0%
CACATCAATGGAATAGTCAT+GGG + Chr5:103086402-103086421 None:intergenic 35.0%
GATGTTGCTGCATATATCTT+TGG - Chr5:103085361-103085380 MsG0580029863.01.T01:intron 35.0%
GCTCACTAGCCATAAATATT+TGG + Chr5:103084619-103084638 None:intergenic 35.0%
GGTATGTTCTTGATCATAGT+AGG - Chr5:103086052-103086071 MsG0580029863.01.T01:intron 35.0%
TAACCATCTGATACTTGATG+AGG + Chr5:103084914-103084933 None:intergenic 35.0%
TACGTGCATATTCATCTCTA+TGG - Chr5:103084525-103084544 MsG0580029863.01.T01:intron 35.0%
TATGGGTCATCTTTACATCT+GGG - Chr5:103084577-103084596 MsG0580029863.01.T01:intron 35.0%
TCAATTGGTTAACATGTCCA+AGG - Chr5:103085611-103085630 MsG0580029863.01.T01:CDS 35.0%
TCATAGCAATTAGAGATGCA+GGG + Chr5:103085339-103085358 None:intergenic 35.0%
TGGCTCTTTATACAAGACTT+GGG - Chr5:103086765-103086784 MsG0580029863.01.T01:CDS 35.0%
TTCAGGATTTATCAACTGGT+TGG - Chr5:103085730-103085749 MsG0580029863.01.T01:intron 35.0%
TTCATAGCAATTAGAGATGC+AGG + Chr5:103085340-103085359 None:intergenic 35.0%
TTGGGCAGATATTACATGAA+AGG - Chr5:103086783-103086802 MsG0580029863.01.T01:CDS 35.0%
TTTGGAGATAACTTGATCAG+AGG + Chr5:103085406-103085425 None:intergenic 35.0%
! AAACCTTCCCATGTTTTCTT+TGG + Chr5:103085424-103085443 None:intergenic 35.0%
! CTATTCCATTGATGTGCTTT+TGG - Chr5:103086406-103086425 MsG0580029863.01.T01:CDS 35.0%
! GAGAGATCAGTGCTATATTT+TGG + Chr5:103086122-103086141 None:intergenic 35.0%
! GTGCAGTTTGCAAACTTTTT+GGG - Chr5:103085583-103085602 MsG0580029863.01.T01:CDS 35.0%
! TGTGCAGTTTGCAAACTTTT+TGG - Chr5:103085582-103085601 MsG0580029863.01.T01:CDS 35.0%
!! GCATATTTTTCAGATGGTGA+TGG - Chr5:103086337-103086356 MsG0580029863.01.T01:intron 35.0%
!!! TGCCGAAAATTTGGTGTTTT+TGG + Chr5:103084267-103084286 None:intergenic 35.0%
ACCCAATGAGAAACAAATCC+TGG + Chr5:103085804-103085823 None:intergenic 40.0%
AGAGATTTGAACGCGGATAA+TGG - Chr5:103084231-103084250 MsG0580029863.01.T01:CDS 40.0%
ATCAATTTGGCCAGTATGCA+TGG - Chr5:103085102-103085121 MsG0580029863.01.T01:CDS 40.0%
CAACCTCATCAAGTATCAGA+TGG - Chr5:103084908-103084927 MsG0580029863.01.T01:intron 40.0%
CATCAATGGAATAGTCATGG+GGG + Chr5:103086400-103086419 None:intergenic 40.0%
CTAGCGAAAAATCCTCCAAA+TGG + Chr5:103086005-103086024 None:intergenic 40.0%
CTGATGTCACTGTATTCACA+AGG + Chr5:103084863-103084882 None:intergenic 40.0%
CTGGCTTAAAAATTGGGTCA+GGG + Chr5:103085767-103085786 None:intergenic 40.0%
GCACATCAATGGAATAGTCA+TGG + Chr5:103086403-103086422 None:intergenic 40.0%
GCATCCATAATAGCACCATT+TGG - Chr5:103085987-103086006 MsG0580029863.01.T01:intron 40.0%
GTGTATGTGTTACATAGGTC+GGG - Chr5:103086682-103086701 MsG0580029863.01.T01:intron 40.0%
GTTTACACAGTCTGCATTCA+CGG - Chr5:103085148-103085167 MsG0580029863.01.T01:intron 40.0%
TATTTGGATCACAACCACCA+TGG + Chr5:103084603-103084622 None:intergenic 40.0%
TCACAATGAATCCAGGACTT+TGG - Chr5:103086140-103086159 MsG0580029863.01.T01:intron 40.0%
TCATATGTGTCCATGCATAC+TGG + Chr5:103085115-103085134 None:intergenic 40.0%
TCCATAATAGCACCATTTGG+AGG - Chr5:103085990-103086009 MsG0580029863.01.T01:intron 40.0%
TCCTGTTAAGATACAGACCA+AGG + Chr5:103086253-103086272 None:intergenic 40.0%
TCCTTGGTCTGTATCTTAAC+AGG - Chr5:103086249-103086268 MsG0580029863.01.T01:intron 40.0%
TCTCCAAAGAAAACATGGGA+AGG - Chr5:103085418-103085437 MsG0580029863.01.T01:CDS 40.0%
TGAGAAACAAATCCTGGCAT+TGG + Chr5:103085798-103085817 None:intergenic 40.0%
TGATCTCTCACAATGAATCC+AGG - Chr5:103086133-103086152 MsG0580029863.01.T01:intron 40.0%
TGATTGTTTGGTCATGTCCA+GGG + Chr5:103086526-103086545 None:intergenic 40.0%
TTCAATTTCCAGGGTGTGTT+TGG + Chr5:103086650-103086669 None:intergenic 40.0%
TTGATTGTTTGGTCATGTCC+AGG + Chr5:103086527-103086546 None:intergenic 40.0%
TTGGTTAACATGTCCAAGGA+AGG - Chr5:103085615-103085634 MsG0580029863.01.T01:CDS 40.0%
! CTGGCTCTTTATACAAGACT+TGG - Chr5:103086764-103086783 MsG0580029863.01.T01:CDS 40.0%
! GCCAGGATTTGTTTCTCATT+GGG - Chr5:103085800-103085819 MsG0580029863.01.T01:intron 40.0%
! TCTGGCTTAAAAATTGGGTC+AGG + Chr5:103085768-103085787 None:intergenic 40.0%
! TGCCAGGATTTGTTTCTCAT+TGG - Chr5:103085799-103085818 MsG0580029863.01.T01:intron 40.0%
! TTTGGAGGATTTTTCGCTAG+CGG - Chr5:103086005-103086024 MsG0580029863.01.T01:intron 40.0%
!! CAAGGTGTTGACTGAGAATA+CGG + Chr5:103084845-103084864 None:intergenic 40.0%
!! TCCTCCAAATGGTGCTATTA+TGG + Chr5:103085994-103086013 None:intergenic 40.0%
!!! ACTTTTTGGGACGCTTCAAT+TGG - Chr5:103085596-103085615 MsG0580029863.01.T01:CDS 40.0%
!!! GTCCAGGCATTTTTTCTTCA+CGG - Chr5:103084800-103084819 MsG0580029863.01.T01:intron 40.0%
ACGCTCAAATGAGGTTAGTG+TGG - Chr5:103084293-103084312 MsG0580029863.01.T01:CDS 45.0%
ACGGCGATGCTATACGTATA+CGG - Chr5:103084819-103084838 MsG0580029863.01.T01:intron 45.0%
CGTCTTCTGTGCCGAAAATT+TGG + Chr5:103084276-103084295 None:intergenic 45.0%
GGGGGACAATAAATGACTGA+TGG + Chr5:103086382-103086401 None:intergenic 45.0%
GTATACTGTCACCAAAGTCC+TGG + Chr5:103086154-103086173 None:intergenic 45.0%
GTGTAGATAATGAGGGACCT+TGG - Chr5:103086728-103086747 MsG0580029863.01.T01:intron 45.0%
TCATCTTTACATCTGGGCCA+TGG - Chr5:103084583-103084602 MsG0580029863.01.T01:intron 45.0%
TGCAAATAGTCCTAGCCACA+AGG + Chr5:103085970-103085989 None:intergenic 45.0%
! CATTGATGTGCTTTTGGACC+AGG - Chr5:103086412-103086431 MsG0580029863.01.T01:CDS 45.0%
! CTGGTCCAAAAGCACATCAA+TGG + Chr5:103086414-103086433 None:intergenic 45.0%
! GACTTTGGTGACAGTATACC+CGG - Chr5:103086155-103086174 MsG0580029863.01.T01:intron 45.0%
! TAGCAGTTTTGCCAGTACAG+TGG - Chr5:103085940-103085959 MsG0580029863.01.T01:intron 45.0%
!! TGGCGGATTTACTGACAGAA+TGG - Chr5:103086181-103086200 MsG0580029863.01.T01:intron 45.0%
!!! AATGAGGGACCTTGGTTTTG+AGG - Chr5:103086736-103086755 MsG0580029863.01.T01:intron 45.0%
CCAGAGTACATTCCAATGCC+AGG - Chr5:103085783-103085802 MsG0580029863.01.T01:intron 50.0%
CGCCGTGAAGAAAAAATGCC+TGG + Chr5:103084805-103084824 None:intergenic 50.0%
GCACAGAAGACGCTCAAATG+AGG - Chr5:103084284-103084303 MsG0580029863.01.T01:CDS 50.0%
GTCAGTAAATCCGCCATGTC+CGG + Chr5:103086177-103086196 None:intergenic 50.0%
GTGATACTCTTCGTTCACCC+TGG - Chr5:103086506-103086525 MsG0580029863.01.T01:CDS 50.0%
TCAGTAAATCCGCCATGTCC+GGG + Chr5:103086176-103086195 None:intergenic 50.0%
TCTTTACATCTGGGCCATGG+TGG - Chr5:103084586-103084605 MsG0580029863.01.T01:intron 50.0%
! CCTGGCATTGGAATGTACTC+TGG + Chr5:103085786-103085805 None:intergenic 50.0%
!! CAGTGTCGACGTGTATGTGT+TGG + Chr5:103086575-103086594 None:intergenic 50.0%
!! GGTGAACGAAGAGTATCACG+TGG + Chr5:103086505-103086524 None:intergenic 50.0%
!! TACTGACAGAATGGACTGCC+AGG - Chr5:103086190-103086209 MsG0580029863.01.T01:intron 50.0%
CACAAGGCATGCCACTGTAC+TGG + Chr5:103085954-103085973 None:intergenic 55.0%
CAGTACAGTGGCATGCCTTG+TGG - Chr5:103085952-103085971 MsG0580029863.01.T01:intron 55.0%
CCAGCTGCTCCTCAAAACCA+AGG + Chr5:103086748-103086767 None:intergenic 55.0%
GACAGTATACCCGGACATGG+CGG - Chr5:103086164-103086183 MsG0580029863.01.T01:intron 55.0%
GGTGACAGTATACCCGGACA+TGG - Chr5:103086161-103086180 MsG0580029863.01.T01:intron 55.0%
!!! CCTTGGTTTTGAGGAGCAGC+TGG - Chr5:103086745-103086764 MsG0580029863.01.T01:intron 55.0%
CAGTGGCATGCCTTGTGGCT+AGG - Chr5:103085957-103085976 MsG0580029863.01.T01:intron 60.0%
CTCGGACACCAAACACACCC+TGG - Chr5:103086639-103086658 MsG0580029863.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 103084228 103086823 103084228 ID=MsG0580029863.01;Name=MsG0580029863.01
Chr5 mRNA 103084228 103086823 103084228 ID=MsG0580029863.01.T01;Parent=MsG0580029863.01;Name=MsG0580029863.01.T01;_AED=0.38;_eAED=0.38;_QI=0|0|0|1|1|1|9|0|327
Chr5 exon 103086746 103086823 103086746 ID=MsG0580029863.01.T01:exon:8892;Parent=MsG0580029863.01.T01
Chr5 exon 103086349 103086602 103086349 ID=MsG0580029863.01.T01:exon:8891;Parent=MsG0580029863.01.T01
Chr5 exon 103085568 103085724 103085568 ID=MsG0580029863.01.T01:exon:8890;Parent=MsG0580029863.01.T01
Chr5 exon 103085415 103085462 103085415 ID=MsG0580029863.01.T01:exon:8889;Parent=MsG0580029863.01.T01
Chr5 exon 103085230 103085316 103085230 ID=MsG0580029863.01.T01:exon:8888;Parent=MsG0580029863.01.T01
Chr5 exon 103084999 103085127 103084999 ID=MsG0580029863.01.T01:exon:8887;Parent=MsG0580029863.01.T01
Chr5 exon 103084840 103084896 103084840 ID=MsG0580029863.01.T01:exon:8886;Parent=MsG0580029863.01.T01
Chr5 exon 103084618 103084701 103084618 ID=MsG0580029863.01.T01:exon:8885;Parent=MsG0580029863.01.T01
Chr5 exon 103084228 103084317 103084228 ID=MsG0580029863.01.T01:exon:8884;Parent=MsG0580029863.01.T01
Chr5 CDS 103086746 103086823 103086746 ID=MsG0580029863.01.T01:cds;Parent=MsG0580029863.01.T01
Chr5 CDS 103086349 103086602 103086349 ID=MsG0580029863.01.T01:cds;Parent=MsG0580029863.01.T01
Chr5 CDS 103085568 103085724 103085568 ID=MsG0580029863.01.T01:cds;Parent=MsG0580029863.01.T01
Chr5 CDS 103085415 103085462 103085415 ID=MsG0580029863.01.T01:cds;Parent=MsG0580029863.01.T01
Chr5 CDS 103085230 103085316 103085230 ID=MsG0580029863.01.T01:cds;Parent=MsG0580029863.01.T01
Chr5 CDS 103084999 103085127 103084999 ID=MsG0580029863.01.T01:cds;Parent=MsG0580029863.01.T01
Chr5 CDS 103084840 103084896 103084840 ID=MsG0580029863.01.T01:cds;Parent=MsG0580029863.01.T01
Chr5 CDS 103084618 103084701 103084618 ID=MsG0580029863.01.T01:cds;Parent=MsG0580029863.01.T01
Chr5 CDS 103084228 103084317 103084228 ID=MsG0580029863.01.T01:cds;Parent=MsG0580029863.01.T01
Gene Sequence

>MsG0580029863.01.T01

ATGAGAGATTTGAACGCGGATAATGGCTGTATTTCACCAAAAACACCAAATTTTCGGCACAGAAGACGCTCAAATGAGTTTCCTCCTGAAATAAGCAAATCAAATGGAGCCATTTTACTTGTAAATGATAAATATAAATACAGATCAATGTGGATACGTGCATATTCATCTCTATGGATGCTAGCATTTGTCTCACTTATCATATATATGGGTCATCTTTACATCTGGGCCATGGTGGTTGTGATCCAAATATTTATGGCTAGTGAGCTCTTTAATCTATTGAGAATAGCTAGTCAAGATAAACGTCTCCCTAAGTTTAAGCTCTTGAATTGGTTTCTTTTCCCTGCATCTCTAATTGCTATGAATGATGTTGCTGCATATATCTTTGGTTTCTTCTTTGGGAAAACACCTCTGATCAAGTTATCTCCAAAGAAAACATGGGAAGGTTTTATTGGAGCATCTGTTGCAACTATGATTGCGGCATTTACGTTTGCAAACTTTTTGGGACGCTTCAATTGGTTAACATGTCCAAGGAAGGATTTATCAACTGGTTGGCTTGAGTGTGACCCTGACCCAATTTTTAAGCCAGAGTACATTCCAATGCCAGGATTTGTTTCTCATTGGATTCCTGAGAAAGAGATAGCAGTTTTGCCAGTACAGTGGCATGCCTTGTGGCTAGGACTATTTGCATCCATAATAGCACCATTTGGAGGATTTTTCGCTAGCGGTTTCAAAAGAGCTTTTAAAATCAAGGACTTTGGTGACAGTATACCCGGACATGGCGGATTTACTGACAGAATGGACTGCCAGATGGTGATGGCAGTTTTTGTTTACATTTACCATCAGTCATTTATTGTCCCCCATGACTATTCCATTGATGTGCTTTTGGACCAGATAATGAGGGACCTTGGTTTTGAGGAGCAGCTGGCTCTTTATACAAGACTTGGGCAGATATTACATGAAAGGCAATTAATGCATACATGA
Protein sequence

>MsG0580029863.01.T01

MRDLNADNGCISPKTPNFRHRRRSNEFPPEISKSNGAILLVNDKYKYRSMWIRAYSSLWMLAFVSLIIYMGHLYIWAMVVVIQIFMASELFNLLRIASQDKRLPKFKLLNWFLFPASLIAMNDVAAYIFGFFFGKTPLIKLSPKKTWEGFIGASVATMIAAFTFANFLGRFNWLTCPRKDLSTGWLECDPDPIFKPEYIPMPGFVSHWIPEKEIAVLPVQWHALWLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGFTDRMDCQMVMAVFVYIYHQSFIVPHDYSIDVLLDQIMRDLGFEEQLALYTRLGQILHERQLMHT*